Animal-Genome cDNA 20110601C-007443


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007443
         (1079 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001039609.1| PHD finger protein 11 [Bos taurus].               371   e-103
Alignment   gi|NP_001069237.1| PHD finger protein 6 [Bos taurus].                108   1e-23
Alignment   gi|XP_002693122.1| PREDICTED: myeloid/lymphoid or mixed-lineage...    78   1e-14
Alignment   gi|XP_585092.4| PREDICTED: myeloid/lymphoid or mixed-lineage le...    78   1e-14
Alignment   gi|NP_001033760.2| G2/M phase-specific E3 ubiquitin-protein lig...    74   2e-13
Alignment   gi|XP_002696740.1| PREDICTED: G2/M-phase specific E3 ubiquitin ...    74   2e-13
Alignment   gi|XP_001790307.1| PREDICTED: G2/M-phase specific E3 ubiquitin ...    74   2e-13
Alignment   gi|XP_002697069.1| PREDICTED: PHD finger protein 7-like [Bos ta...    62   9e-10

>ref|NP_001039609.1| PHD finger protein 11 [Bos taurus].
          Length = 337

 Score =  371 bits (952), Expect = e-103
 Identities = 199/325 (61%), Positives = 225/325 (69%), Gaps = 34/325 (10%)
 Frame = +1

Query: 40  MDAAWPSDPXXXXXXXXXXX----DGVPLPTGVFHVAEKLQKRTCALCPEDLDYSVLYFS 207
           MD A PS P               D VPLPTGVF VAE+LQKR CALCP+DL+ SVLYF+
Sbjct: 1   MDTAGPSAPESTRGASWSEAQAARDIVPLPTGVFQVAERLQKRICALCPKDLECSVLYFA 60

Query: 208 QSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESVKKEIKRGRKLKCTFCGKKGATV 387
           QSE++AAHENCLLYSS LVECE  +PS+++RNFDVESVKKEIKRGRKLKCTFCGKKGATV
Sbjct: 61  QSENIAAHENCLLYSSALVECEDYDPSNNDRNFDVESVKKEIKRGRKLKCTFCGKKGATV 120

Query: 388 GCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTHHAGTQKAGPENGP--------- 540
           GCDLKSC KNYHFFCAK DHAVLQ D   G Y+VFC  HA  Q   P   P         
Sbjct: 121 GCDLKSCFKNYHFFCAKNDHAVLQADGRTGIYKVFCQQHADPQNDLPSVKPLSGVFHSHY 180

Query: 541 ---------------RKRGRKRLSSTGNHAQPSESMALNR------PDVLLKVAFLKQCK 657
                          RKRGR    S  +H QP E MAL +       D ++K AFLK+CK
Sbjct: 181 SEQTKPRHACFSGVKRKRGR----SKRHHVQPPERMALKKEKDGRHTDAIVKAAFLKKCK 236

Query: 658 EAGLLDALFQEILDKFAWIQHRLMGEPTSESDYEEIGASLFDCSLLEGTFLTFRAEIENK 837
           EAGLLDALF+EILDK   IQ RLM E T+ESDYEEIG SLFDC L E T + F+A IEN+
Sbjct: 237 EAGLLDALFEEILDKLHLIQERLMDETTAESDYEEIGTSLFDCRLFEDTLVNFQAAIENQ 296

Query: 838 IHQSEQRRQQLDKEIKLLQDIKDTL 912
           IHQSE+RR+QL +EI+LLQD+K TL
Sbjct: 297 IHQSEERRRQLKEEIELLQDLKQTL 321


>ref|NP_001069237.1| PHD finger protein 6 [Bos taurus].
          Length = 365

 Score =  108 bits (269), Expect = 1e-23
 Identities = 53/124 (42%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
 Frame = +1

Query: 148 QKRTCALCPEDLDYSV--LYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESV 321
           ++R C  C  + D     L  S+++ +AAH  C+L+SS LV   SDN S     F +E V
Sbjct: 13  RQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNES--LGGFSIEDV 70

Query: 322 KKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTH 501
           +KEIKRG KL C+ C   GAT+GCD+K+C + YH+ CA  D A ++    QG Y V+C  
Sbjct: 71  QKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRK 130

Query: 502 HAGT 513
           H  T
Sbjct: 131 HKKT 134



 Score =  102 bits (253), Expect = 8e-22
 Identities = 42/117 (35%), Positives = 78/117 (66%)
 Frame = +1

Query: 196 LYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESVKKEIKRGRKLKCTFCGKK 375
           L+   ++  AAH  C+L+SSG V+  + + ++   +FD+++V +EIKRG+++KCT C + 
Sbjct: 228 LHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFG-DFDIKTVLQEIKRGKRMKCTLCSQP 286

Query: 376 GATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTHHAGTQKAGPENGPRK 546
           GAT+GC++K+C+K YH+ C  +D A    +  +G Y+++C +H+G  +   E+  R+
Sbjct: 287 GATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEEDEERE 343


>ref|XP_002693122.1| PREDICTED: myeloid/lymphoid or mixed-lineage leukemia (trithorax
            homolog, Drosophila)-like, partial [Bos taurus].
          Length = 3821

 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 50/136 (36%), Positives = 69/136 (50%), Gaps = 8/136 (5%)
 Frame = +1

Query: 154  RTCALCPEDLDYS------VLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVE 315
            R CALC    D S      +LY  Q+E    H NC L+S+ + E +  +         ++
Sbjct: 1727 RQCALCLTYGDDSANDAGRLLYIGQNE--WTHVNCALWSAEVFEDDDGS---------LK 1775

Query: 316  SVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFC 495
            +V   + RG++L+C FC K GATVGC L SC  NYHF C++  + V   DK     +V+C
Sbjct: 1776 NVHMAVIRGKQLRCEFCQKPGATVGCCLTSCTSNYHFMCSRAKNCVFLDDK-----KVYC 1830

Query: 496  THHAGTQKAG--PENG 537
              H    K    PENG
Sbjct: 1831 QRHRDLIKGEVVPENG 1846


>ref|XP_585092.4| PREDICTED: myeloid/lymphoid or mixed-lineage leukemia protein [Bos
            taurus].
          Length = 3826

 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 50/136 (36%), Positives = 69/136 (50%), Gaps = 8/136 (5%)
 Frame = +1

Query: 154  RTCALCPEDLDYS------VLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVE 315
            R CALC    D S      +LY  Q+E    H NC L+S+ + E +  +         ++
Sbjct: 1732 RQCALCLTYGDDSANDAGRLLYIGQNE--WTHVNCALWSAEVFEDDDGS---------LK 1780

Query: 316  SVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFC 495
            +V   + RG++L+C FC K GATVGC L SC  NYHF C++  + V   DK     +V+C
Sbjct: 1781 NVHMAVIRGKQLRCEFCQKPGATVGCCLTSCTSNYHFMCSRAKNCVFLDDK-----KVYC 1835

Query: 496  THHAGTQKAG--PENG 537
              H    K    PENG
Sbjct: 1836 QRHRDLIKGEVVPENG 1851


>ref|NP_001033760.2| G2/M phase-specific E3 ubiquitin-protein ligase [Bos taurus].
          Length = 703

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 4/127 (3%)
 Frame = +1

Query: 148 QKRTCALCPEDLDYSVLY----FSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVE 315
           Q  TC  C ++ D  + Y     ++  +L  H  CLL SSG+ +   +    +   F +E
Sbjct: 10  QNSTCVFCRKNDDCPIKYGEKKTNEKWNLTVHYYCLLMSSGIWQRGKEEEGVY--GFLIE 67

Query: 316 SVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFC 495
            ++KE+ R  KLKC+ C K GA++GC    C ++YHF C  +   + Q     G +  FC
Sbjct: 68  DIRKEVTRASKLKCSVCKKTGASIGCVAPRCKRSYHFPCGLQRECIFQ---FTGNFASFC 124

Query: 496 THHAGTQ 516
             H   Q
Sbjct: 125 WKHRPVQ 131


>ref|XP_002696740.1| PREDICTED: G2/M-phase specific E3 ubiquitin ligase [Bos taurus].
          Length = 728

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 4/127 (3%)
 Frame = +1

Query: 148 QKRTCALCPEDLDYSVLY----FSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVE 315
           Q  TC  C ++ D  + Y     ++  +L  H  CLL SSG+ +   +    +   F +E
Sbjct: 35  QNSTCVFCRKNDDCPIKYGEKKTNEKWNLTVHYYCLLMSSGIWQRGKEEEGVY--GFLIE 92

Query: 316 SVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFC 495
            ++KE+ R  KLKC+ C K GA++GC    C ++YHF C  +   + Q     G +  FC
Sbjct: 93  DIRKEVTRASKLKCSVCKKTGASIGCVAPRCKRSYHFPCGLQRECIFQ---FTGNFASFC 149

Query: 496 THHAGTQ 516
             H   Q
Sbjct: 150 WKHRPVQ 156


>ref|XP_001790307.1| PREDICTED: G2/M-phase specific E3 ubiquitin ligase [Bos taurus].
          Length = 703

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 4/127 (3%)
 Frame = +1

Query: 148 QKRTCALCPEDLDYSVLY----FSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVE 315
           Q  TC  C ++ D  + Y     ++  +L  H  CLL SSG+ +   +    +   F +E
Sbjct: 10  QNSTCVFCRKNDDCPIKYGEKKTNEKWNLTVHYYCLLMSSGIWQRGKEEEGVY--GFLIE 67

Query: 316 SVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFC 495
            ++KE+ R  KLKC+ C K GA++GC    C ++YHF C  +   + Q     G +  FC
Sbjct: 68  DIRKEVTRASKLKCSVCKKTGASIGCVAPRCKRSYHFPCGLQRECIFQ---FTGNFASFC 124

Query: 496 THHAGTQ 516
             H   Q
Sbjct: 125 WKHRPVQ 131


>ref|XP_002697069.1| PREDICTED: PHD finger protein 7-like [Bos taurus].
          Length = 344

 Score = 62.0 bits (149), Expect = 9e-10
 Identities = 41/131 (31%), Positives = 56/131 (42%), Gaps = 6/131 (4%)
 Frame = +1

Query: 160 CALC------PEDLDYSVLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESV 321
           C LC      PE L      F Q ++L+ H  CL+ SS L +    N   H   F  E +
Sbjct: 34  CRLCLQEPGDPEKLGE----FLQKDNLSVHYFCLILSSKLPQRGQSNRGFH--GFLPEDI 87

Query: 322 KKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTH 501
           +KE  R  +  C  C +KGA + C    C +N+H  C  +   + Q     G Y+ FC  
Sbjct: 88  RKEAARASRKICFVCKRKGAAINCQKDQCARNFHLPCGLERGCLSQ---FFGEYKSFCGE 144

Query: 502 HAGTQKAGPEN 534
           H  TQ     N
Sbjct: 145 HRPTQNIRRRN 155


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,544,358
Number of extensions: 1018655
Number of successful extensions: 3083
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3071
Number of HSP's successfully gapped: 9
Length of query: 359
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 256
Effective length of database: 14,273,310
Effective search space: 3653967360
Effective search space used: 3653967360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007443
         (1079 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_850073.1| PREDICTED: similar to PHD finger protein 11 (BR...   298   5e-81
Alignment   gi|XP_866100.1| PREDICTED: similar to PHD finger protein 6 isof...   108   1e-23
Alignment   gi|XP_866088.1| PREDICTED: similar to PHD finger protein 6 isof...   108   1e-23
Alignment   gi|XP_866071.1| PREDICTED: similar to PHD finger protein 6 isof...   108   1e-23
Alignment   gi|XP_852628.1| PREDICTED: similar to PHD finger protein 6 isof...   108   1e-23
Alignment   gi|XP_536554.2| PREDICTED: similar to myeloid/lymphoid or mixed...    78   1e-14
Alignment   gi|XP_547761.2| PREDICTED: similar to PHD finger protein 7 (pre...    70   3e-12
Alignment   gi|XP_859383.1| PREDICTED: similar to PHD finger protein 7 isof...    67   3e-11
Alignment   gi|XP_533800.2| PREDICTED: similar to PHD finger protein 7 isof...    67   3e-11
Alignment   gi|XP_853798.1| PREDICTED: similar to myeloid/lymphoid or mixed...    58   1e-08

>ref|XP_850073.1| PREDICTED: similar to PHD finger protein 11 (BRCA1-C terminus
           associated protein) (NY-REN-34 antigen) [Canis
           familiaris].
          Length = 255

 Score =  298 bits (764), Expect = 5e-81
 Identities = 144/252 (57%), Positives = 181/252 (71%)
 Frame = +1

Query: 145 LQKRTCALCPEDLDYSVLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESVK 324
           ++KRTCALCP+D++YSVLYF+QSE++AAHENCLLYSS LVECE  +P + +RNFDVESVK
Sbjct: 1   MEKRTCALCPKDIEYSVLYFAQSENIAAHENCLLYSSALVECEDHDPRNQDRNFDVESVK 60

Query: 325 KEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTHH 504
           KEI RGRKL C FC ++GATVGCD+K+C ++YHFFCAK DHAVLQTD L+G Y+VFC  H
Sbjct: 61  KEIHRGRKLTCAFCNRRGATVGCDVKACNRSYHFFCAKNDHAVLQTDGLRGIYKVFCQQH 120

Query: 505 AGTQKAGPENGPRKRGRKRLSSTGNHAQPSESMALNRPDVLLKVAFLKQCKEAGLLDALF 684
           A    A                                D  +K+ FLK+CKEAGLL+ LF
Sbjct: 121 APGSSAN-------------------------------DATVKIDFLKKCKEAGLLNDLF 149

Query: 685 QEILDKFAWIQHRLMGEPTSESDYEEIGASLFDCSLLEGTFLTFRAEIENKIHQSEQRRQ 864
           +EILDK   IQ RLMG+  S+SDYEEIG SLFDC L + TF+ F+A I+ KIH+ E+R+Q
Sbjct: 150 EEILDKLHLIQERLMGDTASDSDYEEIGTSLFDCRLFDDTFVNFQAAIQRKIHRCEERQQ 209

Query: 865 QLDKEIKLLQDI 900
           QL +E++ LQD+
Sbjct: 210 QLKEELEALQDL 221


>ref|XP_866100.1| PREDICTED: similar to PHD finger protein 6 isoform 1 isoform 4
           [Canis familiaris].
          Length = 366

 Score =  108 bits (269), Expect = 1e-23
 Identities = 53/124 (42%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
 Frame = +1

Query: 148 QKRTCALCPEDLDYSV--LYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESV 321
           ++R C  C  + D     L  S+++ +AAH  C+L+SS LV   SDN S     F +E V
Sbjct: 13  RQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNES--LGGFSIEDV 70

Query: 322 KKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTH 501
           +KEIKRG KL C+ C   GAT+GCD+K+C + YH+ CA  D A ++    QG Y V+C  
Sbjct: 71  QKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRK 130

Query: 502 HAGT 513
           H  T
Sbjct: 131 HKKT 134



 Score =  102 bits (253), Expect = 8e-22
 Identities = 42/117 (35%), Positives = 78/117 (66%)
 Frame = +1

Query: 196 LYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESVKKEIKRGRKLKCTFCGKK 375
           L+   ++  AAH  C+L+SSG V+  + + ++   +FD+++V +EIKRG+++KCT C + 
Sbjct: 229 LHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFG-DFDIKTVLQEIKRGKRMKCTLCSQP 287

Query: 376 GATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTHHAGTQKAGPENGPRK 546
           GAT+GC++K+C+K YH+ C  +D A    +  +G Y+++C +H+G  +   E+  R+
Sbjct: 288 GATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEEDEERE 344


>ref|XP_866088.1| PREDICTED: similar to PHD finger protein 6 isoform 1 isoform 3
           [Canis familiaris].
          Length = 361

 Score =  108 bits (269), Expect = 1e-23
 Identities = 53/124 (42%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
 Frame = +1

Query: 148 QKRTCALCPEDLDYSV--LYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESV 321
           ++R C  C  + D     L  S+++ +AAH  C+L+SS LV   SDN S     F +E V
Sbjct: 13  RQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNES--LGGFSIEDV 70

Query: 322 KKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTH 501
           +KEIKRG KL C+ C   GAT+GCD+K+C + YH+ CA  D A ++    QG Y V+C  
Sbjct: 71  QKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRK 130

Query: 502 HAGT 513
           H  T
Sbjct: 131 HKKT 134



 Score =  102 bits (253), Expect = 8e-22
 Identities = 42/117 (35%), Positives = 78/117 (66%)
 Frame = +1

Query: 196 LYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESVKKEIKRGRKLKCTFCGKK 375
           L+   ++  AAH  C+L+SSG V+  + + ++   +FD+++V +EIKRG+++KCT C + 
Sbjct: 224 LHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFG-DFDIKTVLQEIKRGKRMKCTLCSQP 282

Query: 376 GATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTHHAGTQKAGPENGPRK 546
           GAT+GC++K+C+K YH+ C  +D A    +  +G Y+++C +H+G  +   E+  R+
Sbjct: 283 GATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEEDEERE 339


>ref|XP_866071.1| PREDICTED: similar to PHD finger protein 6 isoform 2 isoform 2
           [Canis familiaris].
          Length = 325

 Score =  108 bits (269), Expect = 1e-23
 Identities = 53/124 (42%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
 Frame = +1

Query: 148 QKRTCALCPEDLDYSV--LYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESV 321
           ++R C  C  + D     L  S+++ +AAH  C+L+SS LV   SDN S     F +E V
Sbjct: 13  RQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNES--LGGFSIEDV 70

Query: 322 KKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTH 501
           +KEIKRG KL C+ C   GAT+GCD+K+C + YH+ CA  D A ++    QG Y V+C  
Sbjct: 71  QKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRK 130

Query: 502 HAGT 513
           H  T
Sbjct: 131 HKKT 134


>ref|XP_852628.1| PREDICTED: similar to PHD finger protein 6 isoform 1 isoform 1
           [Canis familiaris].
          Length = 365

 Score =  108 bits (269), Expect = 1e-23
 Identities = 53/124 (42%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
 Frame = +1

Query: 148 QKRTCALCPEDLDYSV--LYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESV 321
           ++R C  C  + D     L  S+++ +AAH  C+L+SS LV   SDN S     F +E V
Sbjct: 13  RQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNES--LGGFSIEDV 70

Query: 322 KKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTH 501
           +KEIKRG KL C+ C   GAT+GCD+K+C + YH+ CA  D A ++    QG Y V+C  
Sbjct: 71  QKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRK 130

Query: 502 HAGT 513
           H  T
Sbjct: 131 HKKT 134



 Score =  102 bits (253), Expect = 8e-22
 Identities = 42/117 (35%), Positives = 78/117 (66%)
 Frame = +1

Query: 196 LYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESVKKEIKRGRKLKCTFCGKK 375
           L+   ++  AAH  C+L+SSG V+  + + ++   +FD+++V +EIKRG+++KCT C + 
Sbjct: 228 LHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFG-DFDIKTVLQEIKRGKRMKCTLCSQP 286

Query: 376 GATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTHHAGTQKAGPENGPRK 546
           GAT+GC++K+C+K YH+ C  +D A    +  +G Y+++C +H+G  +   E+  R+
Sbjct: 287 GATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEEDEERE 343


>ref|XP_536554.2| PREDICTED: similar to myeloid/lymphoid or mixed-lineage leukemia
            (trithorax homolog, Drosophila) [Canis familiaris].
          Length = 3923

 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 50/136 (36%), Positives = 69/136 (50%), Gaps = 8/136 (5%)
 Frame = +1

Query: 154  RTCALCPEDLDYS------VLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVE 315
            R CALC    D S      +LY  Q+E    H NC L+S+ + E +  +         ++
Sbjct: 1832 RQCALCLTYGDDSANDAGRLLYIGQNE--WTHVNCALWSAEVFEDDDGS---------LK 1880

Query: 316  SVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFC 495
            +V   + RG++L+C FC K GATVGC L SC  NYHF C++  + V   DK     +V+C
Sbjct: 1881 NVHMAVIRGKQLRCEFCQKPGATVGCCLTSCTSNYHFMCSRAKNCVFLDDK-----KVYC 1935

Query: 496  THHAGTQKAG--PENG 537
              H    K    PENG
Sbjct: 1936 QRHRDLIKGEVVPENG 1951


>ref|XP_547761.2| PREDICTED: similar to PHD finger protein 7 (predicted) [Canis
           familiaris].
          Length = 718

 Score = 70.5 bits (171), Expect = 3e-12
 Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 4/127 (3%)
 Frame = +1

Query: 148 QKRTCALCPEDLD----YSVLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVE 315
           Q   C  C ++ D    Y     ++  ++  H  CLL SSG+ +   +    +   F +E
Sbjct: 22  QNLACVFCRKNDDCPNKYGEKKTNEKWNITVHYYCLLMSSGIWQRGKEEEGVY--GFLIE 79

Query: 316 SVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFC 495
            ++KE+ R  KLKC+ C K GA++GC    C ++YHF C  +   + Q     G +  FC
Sbjct: 80  DIRKEVNRASKLKCSICKKTGASIGCVAPRCKRSYHFPCGLQRECIFQ---FTGNFASFC 136

Query: 496 THHAGTQ 516
             H   Q
Sbjct: 137 WKHRPVQ 143


>ref|XP_859383.1| PREDICTED: similar to PHD finger protein 7 isoform 2 isoform 2
           [Canis familiaris].
          Length = 344

 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 46/136 (33%), Positives = 62/136 (45%), Gaps = 11/136 (8%)
 Frame = +1

Query: 160 CALC------PEDLDYSVLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESV 321
           C LC      PE L      F Q ++L+ H  CL+ SS L +    N   H   F  E +
Sbjct: 34  CRLCLREPGDPEKLGE----FLQKDNLSVHYFCLILSSKLPQRGQSNRGFH--GFLPEDI 87

Query: 322 KKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTH 501
           KKE  R  +  C  C KKGA + C    C++N+H  C ++   + Q     G Y+ FC  
Sbjct: 88  KKEAARASRKICFVCKKKGAAINCQKDQCVRNFHLPCGQERGCLSQ---FFGEYKSFCGK 144

Query: 502 HAGTQ-----KAGPEN 534
           H  TQ     KAG E+
Sbjct: 145 HRPTQDIQRGKAGEES 160


>ref|XP_533800.2| PREDICTED: similar to PHD finger protein 7 isoform 1 isoform 1
           [Canis familiaris].
          Length = 383

 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 46/136 (33%), Positives = 62/136 (45%), Gaps = 11/136 (8%)
 Frame = +1

Query: 160 CALC------PEDLDYSVLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESV 321
           C LC      PE L      F Q ++L+ H  CL+ SS L +    N   H   F  E +
Sbjct: 34  CRLCLREPGDPEKLGE----FLQKDNLSVHYFCLILSSKLPQRGQSNRGFH--GFLPEDI 87

Query: 322 KKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTH 501
           KKE  R  +  C  C KKGA + C    C++N+H  C ++   + Q     G Y+ FC  
Sbjct: 88  KKEAARASRKICFVCKKKGAAINCQKDQCVRNFHLPCGQERGCLSQ---FFGEYKSFCGK 144

Query: 502 HAGTQ-----KAGPEN 534
           H  TQ     KAG E+
Sbjct: 145 HRPTQDIQRGKAGEES 160


>ref|XP_853798.1| PREDICTED: similar to myeloid/lymphoid or mixed-lineage leukemia 3
           isoform 1 [Canis familiaris].
          Length = 1041

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 35/109 (32%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
 Frame = +1

Query: 154 RTCALCPED----LDYSVLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESV 321
           R C  C E+     D      +   DL  H NC L+S+ + E ++           + +V
Sbjct: 534 RKCCFCHEEGDGLTDGPARLLNLDLDLWVHLNCALWSTEVYETQAGA---------LINV 584

Query: 322 KKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDK 468
           +  ++RG ++KC FC K GAT GC    C   YHF CA K   +   DK
Sbjct: 585 ELALRRGLQMKCVFCHKMGATSGCHRFRCTNIYHFTCAIKAQCMFFKDK 633


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,145,802
Number of extensions: 1029803
Number of successful extensions: 3188
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 3172
Number of HSP's successfully gapped: 14
Length of query: 359
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 255
Effective length of database: 15,407,560
Effective search space: 3928927800
Effective search space used: 3928927800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007443
         (1079 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001035533.1| PHD finger protein 11 isoform a [Homo sapien...   343   2e-94
Alignment   gi|NP_001035534.1| PHD finger protein 11 isoform b [Homo sapien...   324   1e-88
Alignment   gi|NP_115834.1| PHD finger protein 6 isoform 1 [Homo sapiens].       108   1e-23
Alignment   gi|NP_001015877.1| PHD finger protein 6 isoform 1 [Homo sapiens].    108   1e-23
Alignment   gi|NP_115711.2| PHD finger protein 6 isoform 2 [Homo sapiens].       108   1e-23
Alignment   gi|NP_055542.1| histone-lysine N-methyltransferase MLL4 [Homo s...    80   4e-15
Alignment   gi|NP_001184033.1| histone-lysine N-methyltransferase MLL isofo...    78   1e-14
Alignment   gi|NP_005924.2| histone-lysine N-methyltransferase MLL isoform ...    78   1e-14
Alignment   gi|NP_060239.2| G2/M phase-specific E3 ubiquitin-protein ligase...    69   6e-12
Alignment   gi|NP_057567.3| PHD finger protein 7 isoform 1 [Homo sapiens].        66   6e-11

>ref|NP_001035533.1| PHD finger protein 11 isoform a [Homo sapiens].
          Length = 331

 Score =  343 bits (880), Expect = 2e-94
 Identities = 176/283 (62%), Positives = 212/283 (74%), Gaps = 16/283 (5%)
 Frame = +1

Query: 112 LPTGVFHVAEKLQKRTCALCPEDLDYSVLYFSQSEDLAAHENCLLYSSGLVECESDNPSD 291
           LPTGVF VAEK++KRTCALCP+D++Y+VLYF+QSE++AAHENCLLYSSGLVECE  +P +
Sbjct: 29  LPTGVFQVAEKMEKRTCALCPKDVEYNVLYFAQSENIAAHENCLLYSSGLVECEDQDPLN 88

Query: 292 HERNFDVESVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKL 471
            +R+FDVESVKKEI+RGRKLKC FC K+GATVGCDLK+C KNYHFFCAKKD AV Q+D +
Sbjct: 89  PDRSFDVESVKKEIQRGRKLKCKFCHKRGATVGCDLKNCNKNYHFFCAKKDDAVPQSDGV 148

Query: 472 QGTYRVFCTHHAG----TQKAGPENGPRKRGRKRLSSTGNHAQPSESMALN--------- 612
           +G Y++ C  HA      Q A      RKRGRK+  S GNH QP E+M  N         
Sbjct: 149 RGIYKLLCQQHAQFPIIAQSAKFSGVKRKRGRKKPLS-GNHVQPPETMKCNTFIRQVKEE 207

Query: 613 ---RPDVLLKVAFLKQCKEAGLLDALFQEILDKFAWIQHRLMGEPTSESDYEEIGASLFD 783
                D  +KV FLK+CKEAGLL+ L +EILDK   I  +LM E TSESDYEEIG++LFD
Sbjct: 208 HGRHTDATVKVPFLKKCKEAGLLNYLLEEILDKVHSIPEKLMDETTSESDYEEIGSALFD 267

Query: 784 CSLLEGTFLTFRAEIENKIHQSEQRRQQLDKEIKLLQDIKDTL 912
           C L E TF+ F+A IE KIH S+QR QQL +EI+LLQD+K TL
Sbjct: 268 CRLFEDTFVNFQAAIEKKIHASQQRWQQLKEEIELLQDLKQTL 310


>ref|NP_001035534.1| PHD finger protein 11 isoform b [Homo sapiens].
          Length = 292

 Score =  324 bits (830), Expect = 1e-88
 Identities = 166/272 (61%), Positives = 202/272 (74%), Gaps = 16/272 (5%)
 Frame = +1

Query: 145 LQKRTCALCPEDLDYSVLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESVK 324
           ++KRTCALCP+D++Y+VLYF+QSE++AAHENCLLYSSGLVECE  +P + +R+FDVESVK
Sbjct: 1   MEKRTCALCPKDVEYNVLYFAQSENIAAHENCLLYSSGLVECEDQDPLNPDRSFDVESVK 60

Query: 325 KEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTHH 504
           KEI+RGRKLKC FC K+GATVGCDLK+C KNYHFFCAKKD AV Q+D ++G Y++ C  H
Sbjct: 61  KEIQRGRKLKCKFCHKRGATVGCDLKNCNKNYHFFCAKKDDAVPQSDGVRGIYKLLCQQH 120

Query: 505 AG----TQKAGPENGPRKRGRKRLSSTGNHAQPSESMALN------------RPDVLLKV 636
           A      Q A      RKRGRK+  S GNH QP E+M  N              D  +KV
Sbjct: 121 AQFPIIAQSAKFSGVKRKRGRKKPLS-GNHVQPPETMKCNTFIRQVKEEHGRHTDATVKV 179

Query: 637 AFLKQCKEAGLLDALFQEILDKFAWIQHRLMGEPTSESDYEEIGASLFDCSLLEGTFLTF 816
            FLK+CKEAGLL+ L +EILDK   I  +LM E TSESDYEEIG++LFDC L E TF+ F
Sbjct: 180 PFLKKCKEAGLLNYLLEEILDKVHSIPEKLMDETTSESDYEEIGSALFDCRLFEDTFVNF 239

Query: 817 RAEIENKIHQSEQRRQQLDKEIKLLQDIKDTL 912
           +A IE KIH S+QR QQL +EI+LLQD+K TL
Sbjct: 240 QAAIEKKIHASQQRWQQLKEEIELLQDLKQTL 271


>ref|NP_115834.1| PHD finger protein 6 isoform 1 [Homo sapiens].
          Length = 365

 Score =  108 bits (269), Expect = 1e-23
 Identities = 53/124 (42%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
 Frame = +1

Query: 148 QKRTCALCPEDLDYSV--LYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESV 321
           ++R C  C  + D     L  S+++ +AAH  C+L+SS LV   SDN S     F +E V
Sbjct: 13  RQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNES--LGGFSIEDV 70

Query: 322 KKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTH 501
           +KEIKRG KL C+ C   GAT+GCD+K+C + YH+ CA  D A ++    QG Y V+C  
Sbjct: 71  QKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRK 130

Query: 502 HAGT 513
           H  T
Sbjct: 131 HKKT 134



 Score =  102 bits (253), Expect = 8e-22
 Identities = 42/117 (35%), Positives = 78/117 (66%)
 Frame = +1

Query: 196 LYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESVKKEIKRGRKLKCTFCGKK 375
           L+   ++  AAH  C+L+SSG V+  + + ++   +FD+++V +EIKRG+++KCT C + 
Sbjct: 228 LHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFG-DFDIKTVLQEIKRGKRMKCTLCSQP 286

Query: 376 GATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTHHAGTQKAGPENGPRK 546
           GAT+GC++K+C+K YH+ C  +D A    +  +G Y+++C +H+G  +   E+  R+
Sbjct: 287 GATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEEDEERE 343


>ref|NP_001015877.1| PHD finger protein 6 isoform 1 [Homo sapiens].
          Length = 365

 Score =  108 bits (269), Expect = 1e-23
 Identities = 53/124 (42%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
 Frame = +1

Query: 148 QKRTCALCPEDLDYSV--LYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESV 321
           ++R C  C  + D     L  S+++ +AAH  C+L+SS LV   SDN S     F +E V
Sbjct: 13  RQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNES--LGGFSIEDV 70

Query: 322 KKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTH 501
           +KEIKRG KL C+ C   GAT+GCD+K+C + YH+ CA  D A ++    QG Y V+C  
Sbjct: 71  QKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRK 130

Query: 502 HAGT 513
           H  T
Sbjct: 131 HKKT 134



 Score =  102 bits (253), Expect = 8e-22
 Identities = 42/117 (35%), Positives = 78/117 (66%)
 Frame = +1

Query: 196 LYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESVKKEIKRGRKLKCTFCGKK 375
           L+   ++  AAH  C+L+SSG V+  + + ++   +FD+++V +EIKRG+++KCT C + 
Sbjct: 228 LHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFG-DFDIKTVLQEIKRGKRMKCTLCSQP 286

Query: 376 GATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTHHAGTQKAGPENGPRK 546
           GAT+GC++K+C+K YH+ C  +D A    +  +G Y+++C +H+G  +   E+  R+
Sbjct: 287 GATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEEDEERE 343


>ref|NP_115711.2| PHD finger protein 6 isoform 2 [Homo sapiens].
          Length = 312

 Score =  108 bits (269), Expect = 1e-23
 Identities = 53/124 (42%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
 Frame = +1

Query: 148 QKRTCALCPEDLDYSV--LYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESV 321
           ++R C  C  + D     L  S+++ +AAH  C+L+SS LV   SDN S     F +E V
Sbjct: 13  RQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNES--LGGFSIEDV 70

Query: 322 KKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTH 501
           +KEIKRG KL C+ C   GAT+GCD+K+C + YH+ CA  D A ++    QG Y V+C  
Sbjct: 71  QKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRK 130

Query: 502 HAGT 513
           H  T
Sbjct: 131 HKKT 134


>ref|NP_055542.1| histone-lysine N-methyltransferase MLL4 [Homo sapiens].
          Length = 2715

 Score = 79.7 bits (195), Expect = 4e-15
 Identities = 46/123 (37%), Positives = 66/123 (53%), Gaps = 6/123 (4%)
 Frame = +1

Query: 154  RTCALCPE--DLDYS----VLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVE 315
            R CALC +  D D      +LY  Q+E    H NC ++S+ + E         E +  ++
Sbjct: 1579 RQCALCLKYGDADSKEAGRLLYIGQNE--WTHVNCAIWSAEVFE---------ENDGSLK 1627

Query: 316  SVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFC 495
            +V   + RGR+++C  C K GATVGC L SCL N+HF CA+  + + Q DK     +VFC
Sbjct: 1628 NVHAAVARGRQMRCELCLKPGATVGCCLSSCLSNFHFMCARASYCIFQDDK-----KVFC 1682

Query: 496  THH 504
              H
Sbjct: 1683 QKH 1685


>ref|NP_001184033.1| histone-lysine N-methyltransferase MLL isoform 1 precursor [Homo
            sapiens].
          Length = 3972

 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 50/136 (36%), Positives = 69/136 (50%), Gaps = 8/136 (5%)
 Frame = +1

Query: 154  RTCALCPEDLDYS------VLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVE 315
            R CALC    D S      +LY  Q+E    H NC L+S+ + E +  +         ++
Sbjct: 1874 RQCALCLTYGDDSANDAGRLLYIGQNE--WTHVNCALWSAEVFEDDDGS---------LK 1922

Query: 316  SVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFC 495
            +V   + RG++L+C FC K GATVGC L SC  NYHF C++  + V   DK     +V+C
Sbjct: 1923 NVHMAVIRGKQLRCEFCQKPGATVGCCLTSCTSNYHFMCSRAKNCVFLDDK-----KVYC 1977

Query: 496  THHAGTQKAG--PENG 537
              H    K    PENG
Sbjct: 1978 QRHRDLIKGEVVPENG 1993


>ref|NP_005924.2| histone-lysine N-methyltransferase MLL isoform 2 precursor [Homo
            sapiens].
          Length = 3969

 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 50/136 (36%), Positives = 69/136 (50%), Gaps = 8/136 (5%)
 Frame = +1

Query: 154  RTCALCPEDLDYS------VLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVE 315
            R CALC    D S      +LY  Q+E    H NC L+S+ + E +  +         ++
Sbjct: 1871 RQCALCLTYGDDSANDAGRLLYIGQNE--WTHVNCALWSAEVFEDDDGS---------LK 1919

Query: 316  SVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFC 495
            +V   + RG++L+C FC K GATVGC L SC  NYHF C++  + V   DK     +V+C
Sbjct: 1920 NVHMAVIRGKQLRCEFCQKPGATVGCCLTSCTSNYHFMCSRAKNCVFLDDK-----KVYC 1974

Query: 496  THHAGTQKAG--PENG 537
              H    K    PENG
Sbjct: 1975 QRHRDLIKGEVVPENG 1990


>ref|NP_060239.2| G2/M phase-specific E3 ubiquitin-protein ligase [Homo sapiens].
          Length = 706

 Score = 69.3 bits (168), Expect = 6e-12
 Identities = 39/127 (30%), Positives = 57/127 (44%), Gaps = 4/127 (3%)
 Frame = +1

Query: 148 QKRTCALCPEDLD----YSVLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVE 315
           Q   C  C +  D    Y      +  +L  H  CLL SSG+ +   +    +   F +E
Sbjct: 10  QNLACVFCRKHDDCPNKYGEKKTKEKWNLTVHYYCLLMSSGIWQRGKEEEGVY--GFLIE 67

Query: 316 SVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFC 495
            ++KE+ R  KLKC  C K GA++GC    C ++YHF C  +   + Q     G +  FC
Sbjct: 68  DIRKEVNRASKLKCCVCKKNGASIGCVAPRCKRSYHFPCGLQRECIFQ---FTGNFASFC 124

Query: 496 THHAGTQ 516
             H   Q
Sbjct: 125 WDHRPVQ 131


>ref|NP_057567.3| PHD finger protein 7 isoform 1 [Homo sapiens].
          Length = 381

 Score = 65.9 bits (159), Expect = 6e-11
 Identities = 36/105 (34%), Positives = 51/105 (48%)
 Frame = +1

Query: 202 FSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESVKKEIKRGRKLKCTFCGKKGA 381
           F Q ++++ H  CL+ SS L +    N   H   F  E +KKE  R  +  C  C KKGA
Sbjct: 49  FLQKDNISVHYFCLILSSKLPQRGQSNRGFH--GFLPEDIKKEAARASRKICFVCKKKGA 106

Query: 382 TVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTHHAGTQ 516
            + C    CL+N+H  C ++   + Q     G Y+ FC  H  TQ
Sbjct: 107 AINCQKDQCLRNFHLPCGQERGCLSQ---FFGEYKSFCDKHRPTQ 148


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,397,375
Number of extensions: 1016446
Number of successful extensions: 3068
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 3052
Number of HSP's successfully gapped: 14
Length of query: 359
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 255
Effective length of database: 14,868,908
Effective search space: 3791571540
Effective search space used: 3791571540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007443
         (1079 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_950180.3| PHD finger protein 11 family member [Mus muscul...   254   6e-68
Alignment   gi|NP_001157799.1| PHD finger protein 11 family member [Mus mus...   238   5e-63
Alignment   gi|NP_766191.1| PHD finger protein 11-like [Mus musculus].           237   1e-62
Alignment   gi|NP_001157761.1| PHD finger protein 11 family member [Mus mus...   233   3e-61
Alignment   gi|NP_001157801.1| PHD finger protein 11 family member [Mus mus...   203   2e-52
Alignment   gi|NP_081918.1| PHD finger protein 6 [Mus musculus].                 108   9e-24
Alignment   gi|NP_083550.2| histone-lysine N-methyltransferase MLL4 [Mus mu...    80   4e-15
Alignment   gi|NP_001074518.1| histone-lysine N-methyltransferase MLL [Mus ...    78   1e-14
Alignment   gi|NP_001161436.1| G2/M phase-specific E3 ubiquitin-protein lig...    68   1e-11
Alignment   gi|NP_001161435.1| G2/M phase-specific E3 ubiquitin-protein lig...    68   1e-11

>ref|NP_950180.3| PHD finger protein 11 family member [Mus musculus].
          Length = 320

 Score =  254 bits (650), Expect = 6e-68
 Identities = 132/284 (46%), Positives = 182/284 (64%), Gaps = 16/284 (5%)
 Frame = +1

Query: 109 PLPTGVFHVAEKLQKRTCALCPEDLDYSVLYFSQSEDLAAHENCLLYSSGLVECESDNPS 288
           P+  G   + EK++KRTCALCPE  ++S +YFS S ++ AHENCLLYSSGLVECE+ +  
Sbjct: 11  PVSRGDSPIIEKMEKRTCALCPEGHEWSQIYFSPSGNIVAHENCLLYSSGLVECETLDLR 70

Query: 289 DHERNFDVESVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDK 468
           +  RNFDV+SVKKEI RGR+LKC+FC K GATVGCDL  C K+YH+ CAKKD A+LQ D 
Sbjct: 71  NTIRNFDVKSVKKEIWRGRRLKCSFCNKGGATVGCDLWFCKKSYHYVCAKKDQAILQVDG 130

Query: 469 LQGTYRVFCTHHAGTQKAGPENG-----PRKRGRKRLSSTGNHAQPSESMALN------- 612
             GTY++FC  H+  Q+   E+       +KRG+ +  S+G  AQP      N       
Sbjct: 131 NHGTYKLFCPEHSPEQEEATESADDPSMKKKRGKNKRLSSGPPAQPKTMKCSNAKRHMTE 190

Query: 613 ----RPDVLLKVAFLKQCKEAGLLDALFQEILDKFAWIQHRLMGEPTSESDYEEIGASLF 780
                 D  +K  FLK+C+EAGLL  LF+ IL+    +  RL+ E  SESDYE I   LF
Sbjct: 191 EPHGHTDAAVKSPFLKKCQEAGLLTELFEHILENMDSVHGRLVDETASESDYEGIETLLF 250

Query: 781 DCSLLEGTFLTFRAEIENKIHQSEQRRQQLDKEIKLLQDIKDTL 912
           DC L + T   F+  I++K  + E+R++Q+ ++++ L D++ +L
Sbjct: 251 DCGLFKDTLRKFQEVIKSKACEWEERQRQMKQQLEALADLQQSL 294


>ref|NP_001157799.1| PHD finger protein 11 family member [Mus musculus].
          Length = 276

 Score =  238 bits (608), Expect = 5e-63
 Identities = 122/268 (45%), Positives = 170/268 (63%)
 Frame = +1

Query: 109 PLPTGVFHVAEKLQKRTCALCPEDLDYSVLYFSQSEDLAAHENCLLYSSGLVECESDNPS 288
           P+P G   + EK++KRTCALCPE  ++S +YFS S ++ AHENCLLYSSGLVE E+ +  
Sbjct: 11  PVPNGDCPIIEKMEKRTCALCPEGHEWSQIYFSPSGNIVAHENCLLYSSGLVESEAPDLP 70

Query: 289 DHERNFDVESVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDK 468
           +  RNFDV+SVKKEI RGR+LKC+FC  KGAT+GCDL+SC KNYH  CA +DHA+LQ D+
Sbjct: 71  NTIRNFDVKSVKKEIGRGRRLKCSFCKNKGATMGCDLQSCTKNYHLSCAMEDHAILQVDE 130

Query: 469 LQGTYRVFCTHHAGTQKAGPENGPRKRGRKRLSSTGNHAQPSESMALNRPDVLLKVAFLK 648
             GTY++FC  HA                             E+    + D  +K  FLK
Sbjct: 131 DHGTYKLFCQKHA----------------------------PEAQEPTQRDATVKAPFLK 162

Query: 649 QCKEAGLLDALFQEILDKFAWIQHRLMGEPTSESDYEEIGASLFDCSLLEGTFLTFRAEI 828
           +C+EAGLL+ L + IL+K   I  RL+ E  SESDYE I   LF+  L E T + F+  I
Sbjct: 163 KCQEAGLLNVLLEYILEKMDLIHGRLLDETASESDYEGIETLLFESGLFEDTLIQFQEVI 222

Query: 829 ENKIHQSEQRRQQLDKEIKLLQDIKDTL 912
           ++K  + E+R++ + ++++ L D++ +L
Sbjct: 223 KSKACEWEERQRLMKQQLEALADLQQSL 250


>ref|NP_766191.1| PHD finger protein 11-like [Mus musculus].
          Length = 293

 Score =  237 bits (604), Expect = 1e-62
 Identities = 124/268 (46%), Positives = 169/268 (63%)
 Frame = +1

Query: 109 PLPTGVFHVAEKLQKRTCALCPEDLDYSVLYFSQSEDLAAHENCLLYSSGLVECESDNPS 288
           P+P G   + EK++KRTCALCPE  ++S +YFS S ++ AHENCLLYSSGLVECE+ +  
Sbjct: 11  PVPNGDCPIIEKMEKRTCALCPEGHEWSQIYFSPSANIVAHENCLLYSSGLVECEAPDLP 70

Query: 289 DHERNFDVESVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDK 468
           +  RNFDV+SVKKEI RGR+LKC+FC  KGAT+G DL+SC KNYH  CA +DHA+LQ D+
Sbjct: 71  NTVRNFDVKSVKKEIGRGRRLKCSFCKNKGATMGYDLQSCTKNYHLSCAMEDHAILQVDE 130

Query: 469 LQGTYRVFCTHHAGTQKAGPENGPRKRGRKRLSSTGNHAQPSESMALNRPDVLLKVAFLK 648
             GTY++FC  HA      PE                  +P++       D  +K  FLK
Sbjct: 131 DHGTYKLFCQKHA------PEG----------------QEPTQR------DAAVKAPFLK 162

Query: 649 QCKEAGLLDALFQEILDKFAWIQHRLMGEPTSESDYEEIGASLFDCSLLEGTFLTFRAEI 828
           +C+EAGLL+ L + IL+K   I  RL+ E  SESDYE I   LF C L   T   F+  I
Sbjct: 163 KCQEAGLLNVLLEYILEKMDLIHGRLLNETASESDYEGIETLLFGCGLFGDTLRKFQEVI 222

Query: 829 ENKIHQSEQRRQQLDKEIKLLQDIKDTL 912
            +K  + E+R++ + ++++ L D++  L
Sbjct: 223 NSKACEWEERQRLMKQQLEALADLQQNL 250


>ref|NP_001157761.1| PHD finger protein 11 family member [Mus musculus].
          Length = 339

 Score =  233 bits (593), Expect = 3e-61
 Identities = 128/280 (45%), Positives = 173/280 (61%), Gaps = 16/280 (5%)
 Frame = +1

Query: 121 GVFHVAEKLQKRTCALCPEDLDYSVLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHER 300
           G   + EK++KRTCALCPE  D+SV+YF  S ++AAHENCLLYSSGLVECE+ NP    R
Sbjct: 35  GFCQLTEKMEKRTCALCPEGHDWSVIYFVPSANIAAHENCLLYSSGLVECEAHNPCKIAR 94

Query: 301 NFDVESVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGT 480
           N DV+SV + I RG  + C+FC  +GA V C   SC KNYH FCAK+D+AVLQ   +  T
Sbjct: 95  NVDVKSVLERIWRGSTMICSFCNNEGAIVRCGETSCAKNYHLFCAKEDYAVLQ-GGVTRT 153

Query: 481 YRVFCTHHAGTQKAGPE--NGP---RKRGRKRLSSTGNHAQPS-----------ESMALN 612
           Y++FC  H   Q+   E  +GP   RKRGRK+  S+G  AQP                L 
Sbjct: 154 YKLFCPEHPPQQEEATESADGPSMKRKRGRKKRLSSGPPAQPKVVKFMRSKRHVTGEPLG 213

Query: 613 RPDVLLKVAFLKQCKEAGLLDALFQEILDKFAWIQHRLMGEPTSESDYEEIGASLFDCSL 792
             D  +K  FLK+CK+AGLL+ L + IL+K   I  RL+ E  SESDYE I   LF C L
Sbjct: 214 HRDAAVKAPFLKKCKKAGLLNVLLEYILEKMNSIYGRLLDETASESDYEGIETLLFGCGL 273

Query: 793 LEGTFLTFRAEIENKIHQSEQRRQQLDKEIKLLQDIKDTL 912
            + T   F+  I++K  + E+R++ + ++++ L D++ +L
Sbjct: 274 FKDTLRKFQEVIKSKACEWEERQRLMKQQLEALADLQQSL 313


>ref|NP_001157801.1| PHD finger protein 11 family member [Mus musculus].
          Length = 202

 Score =  203 bits (516), Expect = 2e-52
 Identities = 107/218 (49%), Positives = 140/218 (64%), Gaps = 1/218 (0%)
 Frame = +1

Query: 109 PLPTGVFHVAEKLQKRTCALCPEDLDYSVLYFSQSEDLAAHENCLLYSSGLVECESDNPS 288
           P+P G   + EK++KRTCALCPE  +++ +YF+ S ++AAHENCLLYSSGLVECE+ +  
Sbjct: 11  PVPNGDSPIIEKMEKRTCALCPEGHEWNHIYFAPSLNIAAHENCLLYSSGLVECEAPDLP 70

Query: 289 DHERNFDVESVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDK 468
           +  RNFDV+SVKKEI RGR+LKC+FC  KGAT+GCDL+SC KNYH  CA +D+A+LQ D+
Sbjct: 71  NTVRNFDVKSVKKEIGRGRRLKCSFCKNKGATMGCDLQSCTKNYHLSCAMEDNAILQVDE 130

Query: 469 LQGTYRVFCTHHAGTQKAGPE-NGPRKRGRKRLSSTGNHAQPSESMALNRPDVLLKVAFL 645
             GTY++FC  HA      PE   P +R                       D  +K  FL
Sbjct: 131 DHGTYKLFCQKHA------PEGQDPTQR-----------------------DATVKAPFL 161

Query: 646 KQCKEAGLLDALFQEILDKFAWIQHRLMGEPTSESDYE 759
           K+C+EAGLL+ L + IL+K      RL+ E  SES  E
Sbjct: 162 KKCQEAGLLNVLLEYILEKMDSTYGRLLDETASESGTE 199


>ref|NP_081918.1| PHD finger protein 6 [Mus musculus].
          Length = 364

 Score =  108 bits (269), Expect = 9e-24
 Identities = 53/124 (42%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
 Frame = +1

Query: 148 QKRTCALCPEDLDYSV--LYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESV 321
           ++R C  C  + D     L  S+++ +AAH  C+L+SS LV   SDN S     F +E V
Sbjct: 13  RQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNES--LGGFSIEDV 70

Query: 322 KKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTH 501
           +KEIKRG KL C+ C   GAT+GCD+K+C + YH+ CA  D A ++    QG Y V+C  
Sbjct: 71  QKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRK 130

Query: 502 HAGT 513
           H  T
Sbjct: 131 HKKT 134



 Score =  102 bits (255), Expect = 4e-22
 Identities = 45/123 (36%), Positives = 81/123 (65%), Gaps = 3/123 (2%)
 Frame = +1

Query: 196 LYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESVKKEIKRGRKLKCTFCGKK 375
           L+   ++  AAH  C+L+SSG V+  + + ++   +FD+++V +EIKRG+++KCT C + 
Sbjct: 228 LHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFG-DFDIKTVLQEIKRGKRMKCTLCSQP 286

Query: 376 GATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTHHAGTQKAGPENGPRK--- 546
           GAT+GC++K+C+K YH+ C  +D A    +  +G Y+++C +H+G  +   E+  R+   
Sbjct: 287 GATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEEDEERESKS 346

Query: 547 RGR 555
           RGR
Sbjct: 347 RGR 349


>ref|NP_083550.2| histone-lysine N-methyltransferase MLL4 [Mus musculus].
          Length = 2713

 Score = 79.7 bits (195), Expect = 4e-15
 Identities = 46/123 (37%), Positives = 66/123 (53%), Gaps = 6/123 (4%)
 Frame = +1

Query: 154  RTCALCPE--DLDYS----VLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVE 315
            R CALC +  D D      +LY  Q+E    H NC ++S+ + E         E +  ++
Sbjct: 1585 RQCALCLKYGDADSKEAGRLLYIGQNE--WTHVNCAIWSAEVFE---------ENDGSLK 1633

Query: 316  SVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFC 495
            +V   + RGR+++C  C K GATVGC L SCL N+HF CA+  + + Q DK     +VFC
Sbjct: 1634 NVHAAVARGRQMRCELCLKPGATVGCCLSSCLSNFHFMCARASYCIFQDDK-----KVFC 1688

Query: 496  THH 504
              H
Sbjct: 1689 QKH 1691


>ref|NP_001074518.1| histone-lysine N-methyltransferase MLL [Mus musculus].
          Length = 3963

 Score = 77.8 bits (190), Expect = 1e-14
 Identities = 50/136 (36%), Positives = 69/136 (50%), Gaps = 8/136 (5%)
 Frame = +1

Query: 154  RTCALCPEDLDYS------VLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVE 315
            R CALC    D S      +LY  Q+E    H NC L+S+ + E +  +         ++
Sbjct: 1870 RQCALCLMYGDDSANDAGRLLYIGQNE--WTHVNCALWSAEVFEDDDGS---------LK 1918

Query: 316  SVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFC 495
            +V   + RG++L+C FC K GATVGC L SC  NYHF C++  + V   DK     +V+C
Sbjct: 1919 NVHMAVIRGKQLRCEFCQKPGATVGCCLTSCTSNYHFMCSRAKNCVFLDDK-----KVYC 1973

Query: 496  THHAGTQKAG--PENG 537
              H    K    PENG
Sbjct: 1974 QRHRDLIKGEVVPENG 1989


>ref|NP_001161436.1| G2/M phase-specific E3 ubiquitin-protein ligase isoform 3 [Mus
           musculus].
          Length = 622

 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 4/127 (3%)
 Frame = +1

Query: 148 QKRTCALCPEDLDYSVLYFSQSE----DLAAHENCLLYSSGLVECESDNPSDHERNFDVE 315
           Q   C  C ++ D    Y  +      + + H  CLL SSG+ +   +    +   F +E
Sbjct: 10  QSLACVFCRKNDDCPNKYGEKKTYEKWNFSVHYYCLLMSSGIWQRGKEEEGVY--GFLIE 67

Query: 316 SVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFC 495
            ++KE++R  KLKCT C K GA++GC + +C ++YH  C  +   + Q       +  FC
Sbjct: 68  DIRKEVQRASKLKCTVCKKNGASIGCVVPTCKRSYHLPCGLQKECIFQ---FTDNFASFC 124

Query: 496 THHAGTQ 516
             H   Q
Sbjct: 125 WKHRPVQ 131


>ref|NP_001161435.1| G2/M phase-specific E3 ubiquitin-protein ligase isoform 2 [Mus
           musculus].
          Length = 739

 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 4/127 (3%)
 Frame = +1

Query: 148 QKRTCALCPEDLDYSVLYFSQSE----DLAAHENCLLYSSGLVECESDNPSDHERNFDVE 315
           Q   C  C ++ D    Y  +      + + H  CLL SSG+ +   +    +   F +E
Sbjct: 10  QSLACVFCRKNDDCPNKYGEKKTYEKWNFSVHYYCLLMSSGIWQRGKEEEGVY--GFLIE 67

Query: 316 SVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFC 495
            ++KE++R  KLKCT C K GA++GC + +C ++YH  C  +   + Q       +  FC
Sbjct: 68  DIRKEVQRASKLKCTVCKKNGASIGCVVPTCKRSYHLPCGLQKECIFQ---FTDNFASFC 124

Query: 496 THHAGTQ 516
             H   Q
Sbjct: 125 WKHRPVQ 131


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,546,202
Number of extensions: 856978
Number of successful extensions: 2723
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 2704
Number of HSP's successfully gapped: 15
Length of query: 359
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 256
Effective length of database: 12,523,851
Effective search space: 3206105856
Effective search space used: 3206105856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007443
         (1079 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001172032.1| PHD finger protein 6 [Sus scrofa].                108   7e-24
Alignment   gi|XP_003127115.2| PREDICTED: histone-lysine N-methyltransferas...    80   3e-15
Alignment   gi|XP_003357368.1| PREDICTED: histone-lysine N-methyltransferas...    78   7e-15
Alignment   gi|XP_001928248.2| PREDICTED: PHD finger protein 7 isoform 1 [S...    65   7e-11
Alignment   gi|XP_001927828.3| PREDICTED: g2/M phase-specific E3 ubiquitin-...    61   9e-10
Alignment   gi|XP_003356747.1| PREDICTED: g2/M phase-specific E3 ubiquitin-...    61   9e-10
Alignment   gi|XP_003134598.1| PREDICTED: histone-lysine N-methyltransferas...    60   2e-09

>ref|NP_001172032.1| PHD finger protein 6 [Sus scrofa].
          Length = 366

 Score =  108 bits (269), Expect = 7e-24
 Identities = 53/124 (42%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
 Frame = +1

Query: 148 QKRTCALCPEDLDYSV--LYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESV 321
           ++R C  C  + D     L  S+++ +AAH  C+L+SS LV   SDN S     F +E V
Sbjct: 13  RQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNES--LGGFSIEDV 70

Query: 322 KKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTH 501
           +KEIKRG KL C+ C   GAT+GCD+K+C + YH+ CA  D A ++    QG Y V+C  
Sbjct: 71  QKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRK 130

Query: 502 HAGT 513
           H  T
Sbjct: 131 HKKT 134



 Score =  102 bits (253), Expect = 5e-22
 Identities = 42/117 (35%), Positives = 78/117 (66%)
 Frame = +1

Query: 196 LYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESVKKEIKRGRKLKCTFCGKK 375
           L+   ++  AAH  C+L+SSG V+  + + ++   +FD+++V +EIKRG+++KCT C + 
Sbjct: 229 LHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFG-DFDIKTVLQEIKRGKRMKCTLCSQP 287

Query: 376 GATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTHHAGTQKAGPENGPRK 546
           GAT+GC++K+C+K YH+ C  +D A    +  +G Y+++C +H+G  +   E+  R+
Sbjct: 288 GATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEEDEERE 344


>ref|XP_003127115.2| PREDICTED: histone-lysine N-methyltransferase MLL4-like [Sus scrofa].
          Length = 2721

 Score = 79.7 bits (195), Expect = 3e-15
 Identities = 46/123 (37%), Positives = 66/123 (53%), Gaps = 6/123 (4%)
 Frame = +1

Query: 154  RTCALCPE--DLDYS----VLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVE 315
            R CALC +  D D      +LY  Q+E    H NC ++S+ + E         E +  ++
Sbjct: 1585 RQCALCLKYGDADSKEAGRLLYIGQNE--WTHVNCAIWSAEVFE---------ENDGSLK 1633

Query: 316  SVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFC 495
            +V   + RGR+++C  C K GATVGC L SCL N+HF CA+  + + Q DK     +VFC
Sbjct: 1634 NVHAAVARGRQMRCELCLKPGATVGCCLSSCLSNFHFMCARASYCIFQDDK-----KVFC 1688

Query: 496  THH 504
              H
Sbjct: 1689 QKH 1691


>ref|XP_003357368.1| PREDICTED: histone-lysine N-methyltransferase MLL, partial [Sus
           scrofa].
          Length = 2733

 Score = 78.2 bits (191), Expect = 7e-15
 Identities = 50/136 (36%), Positives = 69/136 (50%), Gaps = 8/136 (5%)
 Frame = +1

Query: 154 RTCALCPEDLDYS------VLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVE 315
           R CALC    D S      +LY  Q+E    H NC L+S+ + E +  +         ++
Sbjct: 637 RQCALCLTYGDDSANDAGRLLYIGQNE--WTHVNCALWSAEVFEDDDGS---------LK 685

Query: 316 SVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFC 495
           +V   + RG++L+C FC K GATVGC L SC  NYHF C++  + V   DK     +V+C
Sbjct: 686 NVHMAVIRGKQLRCEFCQKPGATVGCCLTSCTSNYHFMCSRAKNCVFLDDK-----KVYC 740

Query: 496 THHAGTQKAG--PENG 537
             H    K    PENG
Sbjct: 741 QRHRDLIKGEVVPENG 756


>ref|XP_001928248.2| PREDICTED: PHD finger protein 7 isoform 1 [Sus scrofa].
          Length = 384

 Score = 65.1 bits (157), Expect = 7e-11
 Identities = 42/125 (33%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
 Frame = +1

Query: 160 CALC------PEDLDYSVLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESV 321
           C LC      PE L      F Q ++L+ H  CL+ SS L +    N   H   F  E +
Sbjct: 34  CRLCLREPGDPEKLGE----FLQKDNLSVHYFCLILSSKLPQRGQSNRGFH--GFLPEDI 87

Query: 322 KKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTH 501
           KKE  R  +  C  C KKGA + C    C++N+H  C ++   + Q     G Y+ FC  
Sbjct: 88  KKEAARASRKICFVCKKKGAAINCQKDHCVRNFHLPCGQERGCLSQ---FFGEYKSFCGK 144

Query: 502 HAGTQ 516
           H  TQ
Sbjct: 145 HRPTQ 149


>ref|XP_001927828.3| PREDICTED: g2/M phase-specific E3 ubiquitin-protein ligase isoform
           1 [Sus scrofa].
          Length = 659

 Score = 61.2 bits (147), Expect = 9e-10
 Identities = 28/77 (36%), Positives = 39/77 (50%)
 Frame = +1

Query: 304 FDVESVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTY 483
           F +E +KKE+ R  KLKC  C K GA++GC    C ++YHF C  +   + Q     G +
Sbjct: 18  FLIEDIKKEVTRASKLKCCICKKTGASIGCVAPRCKRSYHFPCGLQRECIFQ---FTGNF 74

Query: 484 RVFCTHHAGTQKAGPEN 534
             FC +H   Q     N
Sbjct: 75  ASFCWNHRPVQMITSNN 91


>ref|XP_003356747.1| PREDICTED: g2/M phase-specific E3 ubiquitin-protein ligase isoform
           2 [Sus scrofa].
          Length = 659

 Score = 61.2 bits (147), Expect = 9e-10
 Identities = 28/77 (36%), Positives = 39/77 (50%)
 Frame = +1

Query: 304 FDVESVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTY 483
           F +E +KKE+ R  KLKC  C K GA++GC    C ++YHF C  +   + Q     G +
Sbjct: 18  FLIEDIKKEVTRASKLKCCICKKTGASIGCVAPRCKRSYHFPCGLQRECIFQ---FTGNF 74

Query: 484 RVFCTHHAGTQKAGPEN 534
             FC +H   Q     N
Sbjct: 75  ASFCWNHRPVQMITSNN 91


>ref|XP_003134598.1| PREDICTED: histone-lysine N-methyltransferase MLL3-like [Sus
           scrofa].
          Length = 626

 Score = 60.1 bits (144), Expect = 2e-09
 Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
 Frame = +1

Query: 154 RTCALCPED----LDYSVLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESV 321
           R C  C E+     D      +   DL  H NC L+S+ + E ++           + +V
Sbjct: 273 RKCCFCHEEGDGLTDGPARLLNLDLDLWVHLNCALWSTEVYETQAGA---------LINV 323

Query: 322 KKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDK 468
           +  ++RG ++KC FC K GAT GC    C  +YHF CA K   +   DK
Sbjct: 324 ELALRRGLQMKCVFCHKMGATSGCHRFRCTNSYHFTCAVKAQCMFFRDK 372


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,000,649
Number of extensions: 685928
Number of successful extensions: 1833
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1826
Number of HSP's successfully gapped: 8
Length of query: 359
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 259
Effective length of database: 8,854,232
Effective search space: 2293246088
Effective search space used: 2293246088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007443
         (1079 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr11                                                         446   e-122

>Sscrofa_Chr11 
||          Length = 87690581

 Score =  446 bits (225), Expect = e-122
 Identities = 255/261 (97%), Gaps = 3/261 (1%)
 Strand = Plus / Minus

                                                                            
Query: 821      cagagatagagaataaaatccatcaatctgaacaaaggaggcagcagctggacaaagaga 880
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18520752 cagagatagagaataaaatccatcaatctgaacaaaggaggcagcagctggacaaagaga 18520693

                                                                            
Query: 881      ttaagctacttcaggacataaaggacaccctgggctccctctttccatcaagttctcctt 940
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18520692 ttaagctacttcaggacataaaggacaccctgggctccctctttccatcaagttctcctt 18520633

                                                                            
Query: 941      cgaattcttctctgtcttcttaagaataaccgttttcctaaaccaggaatcaagccgtca 1000
                |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 18520632 cgaattcttctctgtcttcttaagaataaccg-tttcctaaaccaggaatcaagccgtca 18520574

                                                                            
Query: 1001     ggctgaatgctggagaccggcctgggaaa-acacacatctttaggacca-gcctgccctg 1058
                ||||||||||||||||| |||||||||||  |||||||||||||||||| ||||||||||
Sbjct: 18520573 ggctgaatgctggagacgggcctgggaaagccacacatctttaggaccaggcctgccctg 18520514

                                     
Query: 1059     tctctctgggcctcaaggtcg 1079
                |||||||||||||||| ||||
Sbjct: 18520513 tctctctgggcctcaaagtcg 18520493



 Score =  268 bits (135), Expect = 6e-69
 Identities = 135/135 (100%)
 Strand = Plus / Minus

                                                                            
Query: 351      gaaatgcacattttgcggtaaaaagggagccaccgtgggatgtgatttaaaatcctgctt 410
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18540094 gaaatgcacattttgcggtaaaaagggagccaccgtgggatgtgatttaaaatcctgctt 18540035

                                                                            
Query: 411      gaagaattaccactttttctgtgccaagaaagaccacgcagttctacaaactgataaact 470
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18540034 gaagaattaccactttttctgtgccaagaaagaccacgcagttctacaaactgataaact 18539975

                               
Query: 471      tcaaggaacttatag 485
                |||||||||||||||
Sbjct: 18539974 tcaaggaacttatag 18539960



 Score =  266 bits (134), Expect = 2e-68
 Identities = 134/134 (100%)
 Strand = Plus / Minus

                                                                            
Query: 618      agatgtgcttctgaaagttgcttttcttaagcaatgtaaagaagcaggacttcttgatgc 677
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18532137 agatgtgcttctgaaagttgcttttcttaagcaatgtaaagaagcaggacttcttgatgc 18532078

                                                                            
Query: 678      tttatttcaagaaattctagacaaatttgcttggattcaacacagactcatgggtgaacc 737
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18532077 tttatttcaagaaattctagacaaatttgcttggattcaacacagactcatgggtgaacc 18532018

                              
Query: 738      cacttcagaatcag 751
                ||||||||||||||
Sbjct: 18532017 cacttcagaatcag 18532004



 Score =  244 bits (123), Expect = 8e-62
 Identities = 123/123 (100%)
 Strand = Plus / Minus

                                                                            
Query: 121      ggtgtctttcacgtcgcagagaaattgcaaaaaaggacatgtgcgctctgccccgaagac 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18556737 ggtgtctttcacgtcgcagagaaattgcaaaaaaggacatgtgcgctctgccccgaagac 18556678

                                                                            
Query: 181      cttgactatagcgtcctgtacttttcacagtcggaggacctagctgctcatgaaaactgt 240
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18556677 cttgactatagcgtcctgtacttttcacagtcggaggacctagctgctcatgaaaactgt 18556618

                   
Query: 241      ttg 243
                |||
Sbjct: 18556617 ttg 18556615



 Score =  216 bits (109), Expect = 2e-53
 Identities = 109/109 (100%)
 Strand = Plus / Minus

                                                                            
Query: 243      gctgtattcttcaggacttgtggaatgtgagagtgacaatccaagtgaccacgagagaaa 302
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18544484 gctgtattcttcaggacttgtggaatgtgagagtgacaatccaagtgaccacgagagaaa 18544425

                                                                 
Query: 303      ttttgacgtggaatcagtaaagaaagaaatcaagagaggaaggaagttg 351
                |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18544424 ttttgacgtggaatcagtaaagaaagaaatcaagagaggaaggaagttg 18544376



 Score =  149 bits (75), Expect = 4e-33
 Identities = 75/75 (100%)
 Strand = Plus / Minus

                                                                            
Query: 749      cagactatgaagaaattggggcctcactttttgactgtagcttgttggaaggcacatttt 808
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18529334 cagactatgaagaaattggggcctcactttttgactgtagcttgttggaaggcacatttt 18529275

                               
Query: 809      taacatttcgagcag 823
                |||||||||||||||
Sbjct: 18529274 taacatttcgagcag 18529260



 Score =  133 bits (67), Expect = 2e-28
 Identities = 67/67 (100%)
 Strand = Plus / Minus

                                                                            
Query: 2        aaaaggaacttccgtcggcgcgggcgcagggcgcagccatggacgcggcttggccctccg 61
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18566735 aaaaggaacttccgtcggcgcgggcgcagggcgcagccatggacgcggcttggccctccg 18566676

                       
Query: 62       atcccaa 68
                |||||||
Sbjct: 18566675 atcccaa 18566669



 Score =  107 bits (54), Expect = 1e-20
 Identities = 54/54 (100%)
 Strand = Plus / Minus

                                                                      
Query: 535      ggaccaagaaaaagagggaggaaaagactttcctcaacaggcaatcatgcacag 588
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18534309 ggaccaagaaaaagagggaggaaaagactttcctcaacaggcaatcatgcacag 18534256



 Score =  105 bits (53), Expect = 5e-20
 Identities = 53/53 (100%)
 Strand = Plus / Minus

                                                                     
Query: 484      agagtgttttgcacacaccatgctggaacgcaaaaggctggacctgaaaatgg 536
                |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18536350 agagtgttttgcacacaccatgctggaacgcaaaaggctggacctgaaaatgg 18536298



 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 33/33 (100%)
 Strand = Plus / Minus

                                                 
Query: 587      agccatctgaaagtatggcattgaatagaccag 619
                |||||||||||||||||||||||||||||||||
Sbjct: 18533018 agccatctgaaagtatggcattgaatagaccag 18532986


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,233,588
Number of extensions: 330
Number of successful extensions: 330
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 327
Number of HSP's successfully gapped: 10
Length of query: 1079
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1058
Effective length of database: 2,808,413,156
Effective search space: 2971301119048
Effective search space used: 2971301119048
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)