Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007486
(1065 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069420.1| asialoglycoprotein receptor 2 [Bos taurus]. 306 2e-83
Alignment gi|NP_001032679.1| asialoglycoprotein receptor 1 [Bos taurus]. 213 3e-55
Alignment gi|XP_002695844.1| PREDICTED: macrophage lectin 2-like [Bos tau... 143 2e-34
Alignment gi|XP_002702184.1| PREDICTED: C-type lectin, superfamily member... 143 2e-34
Alignment gi|NP_001178439.1| C-type lectin domain family 4 member A [Bos ... 62 1e-09
Alignment gi|XP_002687867.1| PREDICTED: C-type lectin domain family 4, me... 62 1e-09
Alignment gi|XP_002687866.1| PREDICTED: C-type lectin domain family 4, me... 62 1e-09
Alignment gi|XP_873855.2| PREDICTED: C-type lectin domain family 4, membe... 62 1e-09
Alignment gi|NP_001192535.1| C-type lectin domain family 4 member G [Bos ... 61 1e-09
Alignment gi|XP_002688906.1| PREDICTED: C-type lectin domain family 4, me... 61 1e-09
>ref|NP_001069420.1| asialoglycoprotein receptor 2 [Bos taurus].
Length = 301
Score = 306 bits (785), Expect = 2e-83
Identities = 154/218 (70%), Positives = 165/218 (75%), Gaps = 1/218 (0%)
Frame = +2
Query: 410 MARDFQDIQQLDSEENDHQLGRGEGPGA-GYRPKREDPVWKGTPLPQPLVXXXXXXXXXX 586
MARDFQDIQQLDSEENDHQLGRGEGPG G+ P+RE P WKG P QPLV
Sbjct: 1 MARDFQDIQQLDSEENDHQLGRGEGPGTCGHSPRRE-PFWKGMPPHQPLVLQRLCSKFRL 59
Query: 587 XXXXXGFNVLMLVAVCVVGSQRTQLQMELQTLKETFSNFXXXXXXXXXXXXXRGGSAGDK 766
FNVL+LVA+CV GSQR QLQ ELQTL+E FSNF GG AGDK
Sbjct: 60 SLLVLVFNVLLLVAICVTGSQRAQLQGELQTLQEAFSNFSSGTLMDILNLSSHGGFAGDK 119
Query: 767 VTSLEAKMEKQQQDLKADHATLRLHLKHFPRDVRTLTCRLVFLQSNGTECCPVNWVDYEG 946
V LEAK+ KQQQDLKADHATLRLHLKHFP D+RTLTC++ QSNGTECCPVNWVD++G
Sbjct: 120 VRLLEAKLGKQQQDLKADHATLRLHLKHFPMDLRTLTCQMAHFQSNGTECCPVNWVDHDG 179
Query: 947 SCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQKFI 1060
SCYWFSRSGK W EAEKYCQLENAHLVVIN REEQKFI
Sbjct: 180 SCYWFSRSGKPWLEAEKYCQLENAHLVVINSREEQKFI 217
>ref|NP_001032679.1| asialoglycoprotein receptor 1 [Bos taurus].
Length = 286
Score = 213 bits (541), Expect = 3e-55
Identities = 107/219 (48%), Positives = 138/219 (63%), Gaps = 2/219 (0%)
Frame = +2
Query: 410 MARDFQDIQQLDSEENDHQLGRGEGPGAGYRPKREDPVWKGTPLPQPLVXXXXXXXXXXX 589
M +++QD+Q LD+EENDHQ + PLP
Sbjct: 1 MTKEYQDLQHLDNEENDHQ-------------------HRKRPLPPHSFSRRLCTGPSLL 41
Query: 590 XXXXGFNVLMLVAVCVVGSQRTQLQMELQTLKETFSNFXXXXXXXXXXXXXRGGSAGDKV 769
G ++L+LV +CV+GSQ ++LQ EL L+ETFSN +GG+ G KV
Sbjct: 42 LVSMGLSLLLLVVLCVIGSQNSKLQEELSALRETFSNLTVSTEAKVKALSVQGGNVGRKV 101
Query: 770 TSLEAKMEKQQQDLKADHATLRLHLKHFPRDVRTLTCRLVFLQSNGTE--CCPVNWVDYE 943
SLE+++EKQQQ+L ADH++L LH+K F D+R+L+C++ LQ NG+E CCPVNW+DYE
Sbjct: 102 KSLESQLEKQQQELNADHSSLLLHVKQFVSDLRSLSCQMAVLQGNGSEKACCPVNWIDYE 161
Query: 944 GSCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQKFI 1060
GSCYWFSRSGK W EAEKYCQLENAHLVV+ EEQKFI
Sbjct: 162 GSCYWFSRSGKPWPEAEKYCQLENAHLVVVGSWEEQKFI 200
>ref|XP_002695844.1| PREDICTED: macrophage lectin 2-like [Bos taurus].
Length = 366
Score = 143 bits (361), Expect = 2e-34
Identities = 70/152 (46%), Positives = 99/152 (65%), Gaps = 3/152 (1%)
Frame = +2
Query: 614 LMLVAVCVVGSQRTQLQMELQTLKETFSNFXXXXXXXXXXXXXRGGSAGDKVTSLEAKME 793
L+L ++CV+G Q + Q +LQTL+ +FSNF + S DKV SLE ++E
Sbjct: 131 LLLASICVMGYQNFKFQSDLQTLRTSFSNFTSNSMAEVQALNSQARSLNDKVLSLENRLE 190
Query: 794 KQQQDLKADHATLRLHLKHFPRDVRTLTCRLVFLQSNG---TECCPVNWVDYEGSCYWFS 964
KQ ++LKA + + L ++ +++ +LTC++ L+SNG T CCP NW+++EG CYWFS
Sbjct: 191 KQLEELKAGDSEMLLRVQQLVKNLNSLTCKMDALKSNGSQNTACCPANWLEHEGHCYWFS 250
Query: 965 RSGKAWAEAEKYCQLENAHLVVINFREEQKFI 1060
K W EAEK CQL+NA LVVIN R+EQ FI
Sbjct: 251 SLRKPWPEAEKDCQLKNAQLVVINSRDEQDFI 282
>ref|XP_002702184.1| PREDICTED: C-type lectin, superfamily member 14 [Bos taurus].
Length = 284
Score = 143 bits (361), Expect = 2e-34
Identities = 70/152 (46%), Positives = 99/152 (65%), Gaps = 3/152 (1%)
Frame = +2
Query: 614 LMLVAVCVVGSQRTQLQMELQTLKETFSNFXXXXXXXXXXXXXRGGSAGDKVTSLEAKME 793
L+L ++CV+G Q + Q +LQTL+ +FSNF + S DKV SLE ++E
Sbjct: 49 LLLASICVMGYQNFKFQSDLQTLRTSFSNFTSNSMAEVQALNSQARSLNDKVLSLENRLE 108
Query: 794 KQQQDLKADHATLRLHLKHFPRDVRTLTCRLVFLQSNG---TECCPVNWVDYEGSCYWFS 964
KQ ++LKA + + L ++ +++ +LTC++ L+SNG T CCP NW+++EG CYWFS
Sbjct: 109 KQLEELKAGDSEMLLRVQQLVKNLNSLTCKMDALKSNGSQNTACCPANWLEHEGHCYWFS 168
Query: 965 RSGKAWAEAEKYCQLENAHLVVINFREEQKFI 1060
K W EAEK CQL+NA LVVIN R+EQ FI
Sbjct: 169 SLRKPWPEAEKDCQLKNAQLVVINSRDEQDFI 200
>ref|NP_001178439.1| C-type lectin domain family 4 member A [Bos taurus].
Length = 237
Score = 61.6 bits (148), Expect = 1e-09
Identities = 25/56 (44%), Positives = 34/56 (60%)
Frame = +2
Query: 893 LQSNGTECCPVNWVDYEGSCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQKFI 1060
L+ CCP NW + +CY+ S K+W ++EK C NAHL+VIN + EQ FI
Sbjct: 97 LEGKDWSCCPKNWGPFSSNCYFISNGAKSWNDSEKECLRMNAHLLVINTKAEQDFI 152
>ref|XP_002687867.1| PREDICTED: C-type lectin domain family 4, member A-like isoform 2
[Bos taurus].
Length = 237
Score = 61.6 bits (148), Expect = 1e-09
Identities = 25/56 (44%), Positives = 34/56 (60%)
Frame = +2
Query: 893 LQSNGTECCPVNWVDYEGSCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQKFI 1060
L+ CCP NW + +CY+ S K+W ++EK C NAHL+VIN + EQ FI
Sbjct: 97 LEGKDWSCCPKNWGPFSSNCYFISNGAKSWNDSEKECLRMNAHLLVINTKAEQDFI 152
>ref|XP_002687866.1| PREDICTED: C-type lectin domain family 4, member A-like isoform 1
[Bos taurus].
Length = 199
Score = 61.6 bits (148), Expect = 1e-09
Identities = 25/56 (44%), Positives = 34/56 (60%)
Frame = +2
Query: 893 LQSNGTECCPVNWVDYEGSCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQKFI 1060
L+ CCP NW + +CY+ S K+W ++EK C NAHL+VIN + EQ FI
Sbjct: 59 LEGKDWSCCPKNWGPFSSNCYFISNGAKSWNDSEKECLRMNAHLLVINTKAEQDFI 114
>ref|XP_873855.2| PREDICTED: C-type lectin domain family 4, member A isoform 2 [Bos
taurus].
Length = 199
Score = 61.6 bits (148), Expect = 1e-09
Identities = 25/56 (44%), Positives = 34/56 (60%)
Frame = +2
Query: 893 LQSNGTECCPVNWVDYEGSCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQKFI 1060
L+ CCP NW + +CY+ S K+W ++EK C NAHL+VIN + EQ FI
Sbjct: 59 LEGKDWSCCPKNWGPFSSNCYFISNGAKSWNDSEKECLRMNAHLLVINTKAEQDFI 114
>ref|NP_001192535.1| C-type lectin domain family 4 member G [Bos taurus].
Length = 290
Score = 61.2 bits (147), Expect = 1e-09
Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Frame = +2
Query: 764 KVTSLEAKMEKQQQDLKADHATLRLHLKHFPRDVRTLTCRL------VFLQSNGTECCPV 925
++T +K+ +Q+ LK + +L RD + L L ++ + CP
Sbjct: 105 ELTEARSKLLQQESALKELSERVTQNLAEAGRDRENIRTELFRALEQARLGNSSCKECPE 164
Query: 926 NWVDYEGSCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQKFIA 1063
+W+ ++GSCY+FS W EA+++C+ AHLV++ EEQ F++
Sbjct: 165 SWLPFQGSCYFFSTLRATWVEAQQHCERSGAHLVIVGGLEEQGFLS 210
>ref|XP_002688906.1| PREDICTED: C-type lectin domain family 4, member G-like [Bos taurus].
Length = 290
Score = 61.2 bits (147), Expect = 1e-09
Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Frame = +2
Query: 764 KVTSLEAKMEKQQQDLKADHATLRLHLKHFPRDVRTLTCRL------VFLQSNGTECCPV 925
++T +K+ +Q+ LK + +L RD + L L ++ + CP
Sbjct: 105 ELTEARSKLLQQESALKELSERVTQNLAEAGRDRENIRTELFRALEQARLGNSSCKECPE 164
Query: 926 NWVDYEGSCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQKFIA 1063
+W+ ++GSCY+FS W EA+++C+ AHLV++ EEQ F++
Sbjct: 165 SWLPFQGSCYFFSTLRATWVEAQQHCERSGAHLVIVGGLEEQGFLS 210
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,666,456
Number of extensions: 1363406
Number of successful extensions: 7325
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 7308
Number of HSP's successfully gapped: 22
Length of query: 355
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 252
Effective length of database: 14,273,310
Effective search space: 3596874120
Effective search space used: 3596874120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007486
(1065 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546579.2| PREDICTED: similar to Asialoglycoprotein recept... 213 2e-55
Alignment gi|XP_856943.1| PREDICTED: similar to C-type lectin, superfamil... 160 1e-39
Alignment gi|XP_848725.1| PREDICTED: similar to C-type lectin, superfamil... 157 2e-38
Alignment gi|XP_856984.1| PREDICTED: similar to C-type lectin, superfamil... 152 4e-37
Alignment gi|XP_856860.1| PREDICTED: similar to C-type lectin, superfamil... 132 6e-31
Alignment gi|XP_854311.1| PREDICTED: similar to C-type lectin superfamily... 59 6e-09
Alignment gi|XP_853402.1| PREDICTED: similar to CD209d antigen [Canis fam... 57 2e-08
Alignment gi|XP_542117.2| PREDICTED: similar to C-type lectin superfamily... 53 6e-07
Alignment gi|XP_541981.2| PREDICTED: similar to C-type lectin superfamily... 53 6e-07
Alignment gi|NP_001124304.1| CD209 molecule [Canis lupus familiaris]. 52 7e-07
>ref|XP_546579.2| PREDICTED: similar to Asialoglycoprotein receptor 1 (ASGPR 1) (ASGP-R
1) (Hepatic lectin H1) [Canis familiaris].
Length = 284
Score = 213 bits (542), Expect = 2e-55
Identities = 109/219 (49%), Positives = 143/219 (65%), Gaps = 2/219 (0%)
Frame = +2
Query: 410 MARDFQDIQQLDSEENDHQLGRGEGPGAGYRPKREDPVWKGTPLPQPLVXXXXXXXXXXX 589
M D+QD+Q LD+E+NDH L R+ P P PQPL+
Sbjct: 1 MTNDYQDLQHLDNEDNDHHL-------------RQVP-----PAPQPLLRRLCSGPCLLL 42
Query: 590 XXXXGFNVLMLVAVCVVGSQRTQLQMELQTLKETFSNFXXXXXXXXXXXXXRGGSAGDKV 769
G +VL+LV VCV+GSQ ++L+ ELQ L+ETFSNF +GG+ G K+
Sbjct: 43 LSL-GLSVLLLVVVCVIGSQNSKLRGELQALRETFSNFTASTEVEVKALSSQGGNVGRKM 101
Query: 770 TSLEAKMEKQQQDLKADHATLRLHLKHFPRDVRTLTCRLVFLQSNGT--ECCPVNWVDYE 943
SLE+++EKQQ+DL DH+ L LH+K F D+R+L+C++ L NG+ CCPVNW++YE
Sbjct: 102 KSLESQLEKQQKDLSEDHSDLLLHVKQFVSDLRSLSCQIAALHGNGSTLTCCPVNWLEYE 161
Query: 944 GSCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQKFI 1060
GSCYWFSRSGK+W EA+KYCQLE+AHLVV+N REEQKFI
Sbjct: 162 GSCYWFSRSGKSWPEADKYCQLESAHLVVVNSREEQKFI 200
>ref|XP_856943.1| PREDICTED: similar to C-type lectin, superfamily member 14 isoform 2
isoform 3 [Canis familiaris].
Length = 287
Score = 160 bits (406), Expect = 1e-39
Identities = 75/158 (47%), Positives = 109/158 (68%), Gaps = 5/158 (3%)
Frame = +2
Query: 602 GFNVLMLVAVCVVGSQRTQLQMELQTLKETFSNFXXXXXXXXXXXXX---RGGSAGDKVT 772
G ++L+LV +CV+GSQ +Q Q +L TL+ TFSN +GG + VT
Sbjct: 46 GLSLLLLVGICVIGSQNSQFQRDLATLRATFSNLTSNNVAAMAEVQALKAQGGLLQEMVT 105
Query: 773 SLEAKMEKQQQDLKADHATLRLHLKHFPRDVRTLTCRLVFLQSNGTE--CCPVNWVDYEG 946
SL++++E +QDL+A H+ L ++ +D++ L+C++ LQ+NG+ CC NW++YEG
Sbjct: 106 SLKSEVENHKQDLQAGHSDTVLRVQQLAKDLKALSCQMATLQNNGSRNTCCAPNWLEYEG 165
Query: 947 SCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQKFI 1060
SCYWFSRSGK+W EA+KYCQLE+AHLVV+N REEQ F+
Sbjct: 166 SCYWFSRSGKSWPEADKYCQLESAHLVVVNSREEQTFV 203
>ref|XP_848725.1| PREDICTED: similar to C-type lectin, superfamily member 14 isoform 2
isoform 1 [Canis familiaris].
Length = 295
Score = 157 bits (396), Expect = 2e-38
Identities = 75/166 (45%), Positives = 108/166 (65%), Gaps = 13/166 (7%)
Frame = +2
Query: 602 GFNVLMLVAVCVVGSQRTQLQMELQTLKETFSNFXXXXXXXXXXXXX---RGGSAGDKVT 772
G ++L+LV +CV+GSQ +Q Q +L TL+ TFSN +GG + VT
Sbjct: 46 GLSLLLLVGICVIGSQNSQFQRDLATLRATFSNLTSNNVAAMAEVQALKAQGGLLQEMVT 105
Query: 773 SLEAKMEKQQQDLKADHATLRLHLKHFPRDVRTLTCRLVFLQSNG----------TECCP 922
SL++++E +QDL+A H+ L ++ +D++ L+C++ LQ+NG CC
Sbjct: 106 SLKSEVENHKQDLQAGHSDTVLRVQQLAKDLKALSCQMATLQNNGEGWVAAGGSRNTCCA 165
Query: 923 VNWVDYEGSCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQKFI 1060
NW++YEGSCYWFSRSGK+W EA+KYCQLE+AHLVV+N REEQ F+
Sbjct: 166 PNWLEYEGSCYWFSRSGKSWPEADKYCQLESAHLVVVNSREEQTFV 211
>ref|XP_856984.1| PREDICTED: similar to C-type lectin, superfamily member 14 isoform 2
isoform 4 [Canis familiaris].
Length = 311
Score = 152 bits (385), Expect = 4e-37
Identities = 78/182 (42%), Positives = 110/182 (60%), Gaps = 29/182 (15%)
Frame = +2
Query: 602 GFNVLMLVAVCVVGSQRTQLQMELQTLKETFSNF---XXXXXXXXXXXXXRGG------- 751
G ++L+LV +CV+GSQ +Q Q +L TL+ TFSN +GG
Sbjct: 46 GLSLLLLVGICVIGSQNSQFQRDLATLRATFSNLTSNNVAAMAEVQALKAQGGLLQEMVT 105
Query: 752 -----------------SAGDKVTSLEAKMEKQQQDLKADHATLRLHLKHFPRDVRTLTC 880
S DKV LE+K+EK+ Q+L+A H+ L ++ +D++ L+C
Sbjct: 106 SLKSEVENHKQDLQAARSLNDKVFFLESKLEKELQELQAGHSDTVLRVQQLAKDLKALSC 165
Query: 881 RLVFLQSNGTE--CCPVNWVDYEGSCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQK 1054
++ LQ+NG+ CC NW++YEGSCYWFSRSGK+W EA+KYCQLE+AHLVV+N REEQ
Sbjct: 166 QMATLQNNGSRNTCCAPNWLEYEGSCYWFSRSGKSWPEADKYCQLESAHLVVVNSREEQT 225
Query: 1055 FI 1060
F+
Sbjct: 226 FV 227
>ref|XP_856860.1| PREDICTED: similar to C-type lectin, superfamily member 14 isoform 2
isoform 2 [Canis familiaris].
Length = 272
Score = 132 bits (332), Expect = 6e-31
Identities = 58/105 (55%), Positives = 81/105 (77%), Gaps = 2/105 (1%)
Frame = +2
Query: 752 SAGDKVTSLEAKMEKQQQDLKADHATLRLHLKHFPRDVRTLTCRLVFLQSNGTE--CCPV 925
S DKV LE+K+EK+ Q+L+A H+ L ++ +D++ L+C++ LQ+NG+ CC
Sbjct: 84 SLNDKVFFLESKLEKELQELQAGHSDTVLRVQQLAKDLKALSCQMATLQNNGSRNTCCAP 143
Query: 926 NWVDYEGSCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQKFI 1060
NW++YEGSCYWFSRSGK+W EA+KYCQLE+AHLVV+N REEQ F+
Sbjct: 144 NWLEYEGSCYWFSRSGKSWPEADKYCQLESAHLVVVNSREEQTFV 188
>ref|XP_854311.1| PREDICTED: similar to C-type lectin superfamily member 9
(Macrophage-inducible C-type lectin) [Canis familiaris].
Length = 226
Score = 59.3 bits (142), Expect = 6e-09
Identities = 24/49 (48%), Positives = 33/49 (67%)
Frame = +2
Query: 914 CCPVNWVDYEGSCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQKFI 1060
CCP +WV ++ SCY FS + +W + K C AHLVVIN +EEQ+F+
Sbjct: 79 CCPSDWVHFQSSCYLFSTNTMSWTSSLKNCSNMGAHLVVINTQEEQEFL 127
>ref|XP_853402.1| PREDICTED: similar to CD209d antigen [Canis familiaris].
Length = 336
Score = 57.4 bits (137), Expect = 2e-08
Identities = 23/45 (51%), Positives = 31/45 (68%)
Frame = +2
Query: 917 CPVNWVDYEGSCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQ 1051
CP W+ +EG CY+FS S K+W EA K+CQ +HLV+I+ EQ
Sbjct: 183 CPEGWLPFEGKCYYFSPSTKSWDEARKFCQENYSHLVIISSFAEQ 227
>ref|XP_542117.2| PREDICTED: similar to C-type lectin superfamily 4, member G [Canis
familiaris].
Length = 293
Score = 52.8 bits (125), Expect = 6e-07
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Frame = +2
Query: 779 EAKMEKQQQDLKADHATLRLHLKHFPRD---VRTLTCR-LVFLQSNGTEC--CPVNWVDY 940
+AK+ +Q+ LK + L RD +RT R L ++ + C CP +W+ +
Sbjct: 113 QAKLIQQESALKELSDRVTQSLAEASRDREGIRTELFRALEAVRQGNSSCEECPESWLPF 172
Query: 941 EGSCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQKFIA 1063
+GSCY FS W +++ C AHLV++ EEQ F++
Sbjct: 173 QGSCYLFSVQRATWEASQQNCAGAGAHLVIVGDLEEQGFLS 213
>ref|XP_541981.2| PREDICTED: similar to C-type lectin superfamily 4, member G [Canis
familiaris].
Length = 183
Score = 52.8 bits (125), Expect = 6e-07
Identities = 23/51 (45%), Positives = 34/51 (66%)
Frame = +2
Query: 911 ECCPVNWVDYEGSCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQKFIA 1063
E C NW+ ++GSCY FS W +A+ C ++AHLV+IN + EQKF++
Sbjct: 102 EPCLENWMAFQGSCYQFSTQLLDWFKAKDDCAEKDAHLVIINSQAEQKFLS 152
>ref|NP_001124304.1| CD209 molecule [Canis lupus familiaris].
Length = 246
Score = 52.4 bits (124), Expect = 7e-07
Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Frame = +2
Query: 764 KVTSLEAKMEKQQQDLKADHATLRLHLKHFPRDVRTLTCRLVFLQSNGTECC---PVNWV 934
+V+ + ++K+ D + + + + + K D+ + +L ++ + C P W
Sbjct: 64 QVSRIRQSLQKETWDHQENPSQVDVSQKRTRSDLDEILQQLTWMNATLAGLCRPCPWKWE 123
Query: 935 DYEGSCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQKFI 1060
++ SCY+FS++ W E+ CQ A LV+IN EEQKF+
Sbjct: 124 LFQESCYFFSQTQNTWKESISACQNLRAQLVIINSTEEQKFL 165
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,611,731
Number of extensions: 1404876
Number of successful extensions: 7613
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 7583
Number of HSP's successfully gapped: 14
Length of query: 355
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 251
Effective length of database: 15,407,560
Effective search space: 3867297560
Effective search space used: 3867297560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007486
(1065 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001188281.1| asialoglycoprotein receptor 2 isoform d [Hom... 258 8e-69
Alignment gi|NP_550434.1| asialoglycoprotein receptor 2 isoform a [Homo s... 251 6e-67
Alignment gi|NP_001172.1| asialoglycoprotein receptor 2 isoform a [Homo s... 251 6e-67
Alignment gi|NP_550435.1| asialoglycoprotein receptor 2 isoform b [Homo s... 235 6e-62
Alignment gi|NP_550436.1| asialoglycoprotein receptor 2 isoform c [Homo s... 229 4e-60
Alignment gi|NP_001662.1| asialoglycoprotein receptor 1 isoform a [Homo s... 207 2e-53
Alignment gi|NP_001184145.1| asialoglycoprotein receptor 1 isoform b [Hom... 166 3e-41
Alignment gi|NP_006335.2| C-type lectin domain family 10 member A isoform... 155 8e-38
Alignment gi|NP_878910.1| C-type lectin domain family 10 member A isoform... 144 1e-34
Alignment gi|NP_940894.1| C-type lectin domain family 4 member G [Homo sa... 64 2e-10
>ref|NP_001188281.1| asialoglycoprotein receptor 2 isoform d [Homo sapiens].
Length = 306
Score = 258 bits (658), Expect = 8e-69
Identities = 131/220 (59%), Positives = 151/220 (68%), Gaps = 3/220 (1%)
Frame = +2
Query: 410 MARDFQDIQQLDSEENDHQLGRGEGPGAG-YRPKREDPVWKGTPLPQPLVXXXXXXXXXX 586
MA+DFQDIQQL SEENDH +GEGPG P+R +P KG P QPL
Sbjct: 1 MAKDFQDIQQLSSEENDHPFHQGEGPGTRRLNPRRGNPFLKGPPPAQPLAQRLCSMVCFS 60
Query: 587 XXXXXGFNVLMLVAVCVVGSQRTQLQMELQTLKETFSNFXXXXXXXXXXXXXRGGSAGDK 766
FN+L+LV +CV GSQ QLQ EL++LKE FSNF GGS GDK
Sbjct: 61 LLAL-SFNILLLVVICVTGSQSAQLQAELRSLKEAFSNFSSSTLTEVQAISTHGGSVGDK 119
Query: 767 VTSLEAKMEKQQQDLKADHATLRLHLKHFPRDVRTLTCRLVFLQSNGTE--CCPVNWVDY 940
+TSL AK+EKQQQDLKADH L HLKHFP D+R + C++ L SNG++ CCPVNWV++
Sbjct: 120 ITSLGAKLEKQQQDLKADHDALLFHLKHFPVDLRFVACQMELLHSNGSQRTCCPVNWVEH 179
Query: 941 EGSCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQKFI 1060
+GSCYWFS SGKAWAEAEKYCQLENAHLVVIN EEQKFI
Sbjct: 180 QGSCYWFSHSGKAWAEAEKYCQLENAHLVVINSWEEQKFI 219
>ref|NP_550434.1| asialoglycoprotein receptor 2 isoform a [Homo sapiens].
Length = 311
Score = 251 bits (642), Expect = 6e-67
Identities = 131/225 (58%), Positives = 151/225 (67%), Gaps = 8/225 (3%)
Frame = +2
Query: 410 MARDFQDIQQLDSEENDHQLGRGEGPGAG-YRPKREDPVWKGTPLPQPLVXXXXXXXXXX 586
MA+DFQDIQQL SEENDH +GEGPG P+R +P KG P QPL
Sbjct: 1 MAKDFQDIQQLSSEENDHPFHQGEGPGTRRLNPRRGNPFLKGPPPAQPLAQRLCSMVCFS 60
Query: 587 XXXXXGFNVLMLVAVCVVGSQR-----TQLQMELQTLKETFSNFXXXXXXXXXXXXXRGG 751
FN+L+LV +CV GSQ QLQ EL++LKE FSNF GG
Sbjct: 61 LLAL-SFNILLLVVICVTGSQSEGHRGAQLQAELRSLKEAFSNFSSSTLTEVQAISTHGG 119
Query: 752 SAGDKVTSLEAKMEKQQQDLKADHATLRLHLKHFPRDVRTLTCRLVFLQSNGTE--CCPV 925
S GDK+TSL AK+EKQQQDLKADH L HLKHFP D+R + C++ L SNG++ CCPV
Sbjct: 120 SVGDKITSLGAKLEKQQQDLKADHDALLFHLKHFPVDLRFVACQMELLHSNGSQRTCCPV 179
Query: 926 NWVDYEGSCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQKFI 1060
NWV+++GSCYWFS SGKAWAEAEKYCQLENAHLVVIN EEQKFI
Sbjct: 180 NWVEHQGSCYWFSHSGKAWAEAEKYCQLENAHLVVINSWEEQKFI 224
>ref|NP_001172.1| asialoglycoprotein receptor 2 isoform a [Homo sapiens].
Length = 311
Score = 251 bits (642), Expect = 6e-67
Identities = 131/225 (58%), Positives = 151/225 (67%), Gaps = 8/225 (3%)
Frame = +2
Query: 410 MARDFQDIQQLDSEENDHQLGRGEGPGAG-YRPKREDPVWKGTPLPQPLVXXXXXXXXXX 586
MA+DFQDIQQL SEENDH +GEGPG P+R +P KG P QPL
Sbjct: 1 MAKDFQDIQQLSSEENDHPFHQGEGPGTRRLNPRRGNPFLKGPPPAQPLAQRLCSMVCFS 60
Query: 587 XXXXXGFNVLMLVAVCVVGSQR-----TQLQMELQTLKETFSNFXXXXXXXXXXXXXRGG 751
FN+L+LV +CV GSQ QLQ EL++LKE FSNF GG
Sbjct: 61 LLAL-SFNILLLVVICVTGSQSEGHRGAQLQAELRSLKEAFSNFSSSTLTEVQAISTHGG 119
Query: 752 SAGDKVTSLEAKMEKQQQDLKADHATLRLHLKHFPRDVRTLTCRLVFLQSNGTE--CCPV 925
S GDK+TSL AK+EKQQQDLKADH L HLKHFP D+R + C++ L SNG++ CCPV
Sbjct: 120 SVGDKITSLGAKLEKQQQDLKADHDALLFHLKHFPVDLRFVACQMELLHSNGSQRTCCPV 179
Query: 926 NWVDYEGSCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQKFI 1060
NWV+++GSCYWFS SGKAWAEAEKYCQLENAHLVVIN EEQKFI
Sbjct: 180 NWVEHQGSCYWFSHSGKAWAEAEKYCQLENAHLVVINSWEEQKFI 224
>ref|NP_550435.1| asialoglycoprotein receptor 2 isoform b [Homo sapiens].
Length = 287
Score = 235 bits (599), Expect = 6e-62
Identities = 123/219 (56%), Positives = 141/219 (64%), Gaps = 2/219 (0%)
Frame = +2
Query: 410 MARDFQDIQQLDSEENDHQLGRGEGPGAGYRPKREDPVWKGTPLPQPLVXXXXXXXXXXX 589
MA+DFQDIQQL SEENDH P +G P QPL
Sbjct: 1 MAKDFQDIQQLSSEENDH------------------PFHQGPPPAQPLAQRLCSMVCFSL 42
Query: 590 XXXXGFNVLMLVAVCVVGSQRTQLQMELQTLKETFSNFXXXXXXXXXXXXXRGGSAGDKV 769
FN+L+LV +CV GSQ QLQ EL++LKE FSNF GGS GDK+
Sbjct: 43 LAL-SFNILLLVVICVTGSQSAQLQAELRSLKEAFSNFSSSTLTEVQAISTHGGSVGDKI 101
Query: 770 TSLEAKMEKQQQDLKADHATLRLHLKHFPRDVRTLTCRLVFLQSNGTE--CCPVNWVDYE 943
TSL AK+EKQQQDLKADH L HLKHFP D+R + C++ L SNG++ CCPVNWV+++
Sbjct: 102 TSLGAKLEKQQQDLKADHDALLFHLKHFPVDLRFVACQMELLHSNGSQRTCCPVNWVEHQ 161
Query: 944 GSCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQKFI 1060
GSCYWFS SGKAWAEAEKYCQLENAHLVVIN EEQKFI
Sbjct: 162 GSCYWFSHSGKAWAEAEKYCQLENAHLVVINSWEEQKFI 200
>ref|NP_550436.1| asialoglycoprotein receptor 2 isoform c [Homo sapiens].
Length = 292
Score = 229 bits (583), Expect = 4e-60
Identities = 123/224 (54%), Positives = 141/224 (62%), Gaps = 7/224 (3%)
Frame = +2
Query: 410 MARDFQDIQQLDSEENDHQLGRGEGPGAGYRPKREDPVWKGTPLPQPLVXXXXXXXXXXX 589
MA+DFQDIQQL SEENDH P +G P QPL
Sbjct: 1 MAKDFQDIQQLSSEENDH------------------PFHQGPPPAQPLAQRLCSMVCFSL 42
Query: 590 XXXXGFNVLMLVAVCVVGSQR-----TQLQMELQTLKETFSNFXXXXXXXXXXXXXRGGS 754
FN+L+LV +CV GSQ QLQ EL++LKE FSNF GGS
Sbjct: 43 LAL-SFNILLLVVICVTGSQSEGHRGAQLQAELRSLKEAFSNFSSSTLTEVQAISTHGGS 101
Query: 755 AGDKVTSLEAKMEKQQQDLKADHATLRLHLKHFPRDVRTLTCRLVFLQSNGTE--CCPVN 928
GDK+TSL AK+EKQQQDLKADH L HLKHFP D+R + C++ L SNG++ CCPVN
Sbjct: 102 VGDKITSLGAKLEKQQQDLKADHDALLFHLKHFPVDLRFVACQMELLHSNGSQRTCCPVN 161
Query: 929 WVDYEGSCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQKFI 1060
WV+++GSCYWFS SGKAWAEAEKYCQLENAHLVVIN EEQKFI
Sbjct: 162 WVEHQGSCYWFSHSGKAWAEAEKYCQLENAHLVVINSWEEQKFI 205
>ref|NP_001662.1| asialoglycoprotein receptor 1 isoform a [Homo sapiens].
Length = 291
Score = 207 bits (526), Expect = 2e-53
Identities = 105/219 (47%), Positives = 143/219 (65%), Gaps = 2/219 (0%)
Frame = +2
Query: 410 MARDFQDIQQLDSEENDHQLGRGEGPGAGYRPKREDPVWKGTPLPQPLVXXXXXXXXXXX 589
M +++QD+Q LD+EE+DH R KG P PQPL+
Sbjct: 1 MTKEYQDLQHLDNEESDHHQLR-----------------KGPPPPQPLLQRLCSGPRLLL 43
Query: 590 XXXXGFNVLMLVAVCVVGSQRTQLQMELQTLKETFSNFXXXXXXXXXXXXXRGGSAGDKV 769
G ++L+LV VCV+GSQ +QLQ EL+ L+ETFSNF +GG+ G K+
Sbjct: 44 LSL-GLSLLLLVVVCVIGSQNSQLQEELRGLRETFSNFTASTEAQVKGLSTQGGNVGRKM 102
Query: 770 TSLEAKMEKQQQDLKADHATLRLHLKHFPRDVRTLTCRLVFLQSNGTE--CCPVNWVDYE 943
SLE+++EKQQ+DL DH++L LH+K F D+R+L+C++ LQ NG+E CCPVNWV++E
Sbjct: 103 KSLESQLEKQQKDLSEDHSSLLLHVKQFVSDLRSLSCQMAALQGNGSERTCCPVNWVEHE 162
Query: 944 GSCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQKFI 1060
SCYWFSRSGKAWA+A+ YC+LE+AHLVV+ EEQKF+
Sbjct: 163 RSCYWFSRSGKAWADADNYCRLEDAHLVVVTSWEEQKFV 201
>ref|NP_001184145.1| asialoglycoprotein receptor 1 isoform b [Homo sapiens].
Length = 252
Score = 166 bits (420), Expect = 3e-41
Identities = 77/138 (55%), Positives = 104/138 (75%), Gaps = 2/138 (1%)
Frame = +2
Query: 653 TQLQMELQTLKETFSNFXXXXXXXXXXXXXRGGSAGDKVTSLEAKMEKQQQDLKADHATL 832
+QLQ EL+ L+ETFSNF +GG+ G K+ SLE+++EKQQ+DL DH++L
Sbjct: 25 SQLQEELRGLRETFSNFTASTEAQVKGLSTQGGNVGRKMKSLESQLEKQQKDLSEDHSSL 84
Query: 833 RLHLKHFPRDVRTLTCRLVFLQSNGTE--CCPVNWVDYEGSCYWFSRSGKAWAEAEKYCQ 1006
LH+K F D+R+L+C++ LQ NG+E CCPVNWV++E SCYWFSRSGKAWA+A+ YC+
Sbjct: 85 LLHVKQFVSDLRSLSCQMAALQGNGSERTCCPVNWVEHERSCYWFSRSGKAWADADNYCR 144
Query: 1007 LENAHLVVINFREEQKFI 1060
LE+AHLVV+ EEQKF+
Sbjct: 145 LEDAHLVVVTSWEEQKFV 162
>ref|NP_006335.2| C-type lectin domain family 10 member A isoform 2 [Homo sapiens].
Length = 292
Score = 155 bits (391), Expect = 8e-38
Identities = 77/185 (41%), Positives = 111/185 (60%), Gaps = 6/185 (3%)
Frame = +2
Query: 524 WKGTPLPQPLVXXXXXXXXXXXXXXXGFNVLMLVAVCVVGSQRTQLQMELQTLKETFSNF 703
+K PLP + G +L+LV +CVVG Q ++ Q +L TL+ FSNF
Sbjct: 20 FKNGPLPLQSLLQRLCSGPCHLLLSLGLGLLLLVIICVVGFQNSKFQRDLVTLRTDFSNF 79
Query: 704 XXXXXXXXXXXXXRGGSAGDKVTSLEAKMEKQQQDLKADHATLRLHLKHFPRDVRTLTCR 883
+G S + + SL+A++E +Q+ +A H+ + L ++ +D++ LTC+
Sbjct: 80 TSNTVAEIQALTSQGSSLEETIASLKAEVEGFKQERQAVHSEMLLRVQQLVQDLKKLTCQ 139
Query: 884 LVFLQSNGTE------CCPVNWVDYEGSCYWFSRSGKAWAEAEKYCQLENAHLVVINFRE 1045
+ L +NG E CCPVNWV+++ SCYWFS SG +WAEAEKYCQL+NAHLVVIN RE
Sbjct: 140 VATLNNNGEEASTEGTCCPVNWVEHQDSCYWFSHSGMSWAEAEKYCQLKNAHLVVINSRE 199
Query: 1046 EQKFI 1060
EQ F+
Sbjct: 200 EQNFV 204
>ref|NP_878910.1| C-type lectin domain family 10 member A isoform 1 [Homo sapiens].
Length = 316
Score = 144 bits (363), Expect = 1e-34
Identities = 79/209 (37%), Positives = 112/209 (53%), Gaps = 30/209 (14%)
Frame = +2
Query: 524 WKGTPLPQPLVXXXXXXXXXXXXXXXGFNVLMLVAVCVVGSQRTQLQMELQTLKETFSNF 703
+K PLP + G +L+LV +CVVG Q ++ Q +L TL+ FSNF
Sbjct: 20 FKNGPLPLQSLLQRLCSGPCHLLLSLGLGLLLLVIICVVGFQNSKFQRDLVTLRTDFSNF 79
Query: 704 XXXXXXXXXXXXXRGGSAGDKVTSLEAKMEKQQQDLKA------DHATLRLHLKHFP--- 856
+G S + + SL+A++E +Q+ +A +H T + HL H P
Sbjct: 80 TSNTVAEIQALTSQGSSLEETIASLKAEVEGFKQERQAGVSELQEHTTQKAHLGHCPHCP 139
Query: 857 ------------------RDVRTLTCRLVFLQSNGTE---CCPVNWVDYEGSCYWFSRSG 973
+D++ LTC++ L +N + CCPVNWV+++ SCYWFS SG
Sbjct: 140 SVCVPVHSEMLLRVQQLVQDLKKLTCQVATLNNNASTEGTCCPVNWVEHQDSCYWFSHSG 199
Query: 974 KAWAEAEKYCQLENAHLVVINFREEQKFI 1060
+WAEAEKYCQL+NAHLVVIN REEQ F+
Sbjct: 200 MSWAEAEKYCQLKNAHLVVINSREEQNFV 228
>ref|NP_940894.1| C-type lectin domain family 4 member G [Homo sapiens].
Length = 293
Score = 64.3 bits (155), Expect = 2e-10
Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 6/100 (6%)
Frame = +2
Query: 779 EAKMEKQQQDLKADHATLRLHLKHFPR---DVRTLTCRL---VFLQSNGTECCPVNWVDY 940
+AK+ +Q+ L+ + L R DVRT R V LQ+N E CP +W+ +
Sbjct: 113 QAKLMEQESALRELRERVTQGLAEAGRGREDVRTELFRALEAVRLQNNSCEPCPTSWLSF 172
Query: 941 EGSCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQKFI 1060
EGSCY+FS WA A+ +C +AHLV++ +EQ F+
Sbjct: 173 EGSCYFFSVPKTTWAAAQDHCADASAHLVIVGGLDEQGFL 212
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,567,668
Number of extensions: 1363218
Number of successful extensions: 6988
Number of sequences better than 1.0e-05: 30
Number of HSP's gapped: 6942
Number of HSP's successfully gapped: 30
Length of query: 355
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 251
Effective length of database: 14,868,908
Effective search space: 3732095908
Effective search space used: 3732095908
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007486
(1065 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031519.1| asialoglycoprotein receptor 2 [Mus musculus]. 244 6e-65
Alignment gi|NP_033844.1| asialoglycoprotein receptor 1 [Mus musculus]. 184 1e-46
Alignment gi|NP_660119.1| macrophage galactose N-acetyl-galactosamine spe... 143 3e-34
Alignment gi|NP_001191181.1| macrophage asialoglycoprotein-binding protei... 140 1e-33
Alignment gi|NP_034926.1| macrophage asialoglycoprotein-binding protein 1... 140 1e-33
Alignment gi|NP_064332.1| C-type lectin domain family 4 member E [Mus mus... 64 3e-10
Alignment gi|NP_083741.1| C-type lectin domain family 4 member G [Mus mus... 62 8e-10
Alignment gi|NP_955015.1| C-type lectin domain family 4, member a1 [Mus m... 59 5e-09
Alignment gi|NP_780735.2| C-type lectin domain family 1 member A [Mus mus... 53 4e-07
Alignment gi|NP_058031.2| C-type lectin domain family 4 member F [Mus mus... 52 6e-07
>ref|NP_031519.1| asialoglycoprotein receptor 2 [Mus musculus].
Length = 301
Score = 244 bits (624), Expect = 6e-65
Identities = 122/218 (55%), Positives = 148/218 (67%), Gaps = 1/218 (0%)
Frame = +2
Query: 410 MARDFQDIQQLDSEENDHQLGRGEGPGAGYR-PKREDPVWKGTPLPQPLVXXXXXXXXXX 586
M +D QDIQQLDSEENDHQL + G+ + P+ E+P WKG PL +P
Sbjct: 1 MEKDCQDIQQLDSEENDHQLSGDDEHGSHVQDPRIENPHWKGQPLSRPF-PQRLCSTFRL 59
Query: 587 XXXXXGFNVLMLVAVCVVGSQRTQLQMELQTLKETFSNFXXXXXXXXXXXXXRGGSAGDK 766
FN+L+LV +CVV SQ QLQ E +TLKETFSNF GGS
Sbjct: 60 SLLALAFNILLLVVICVVSSQSIQLQEEFRTLKETFSNFSSSTLMEFGALDTLGGSTNAI 119
Query: 767 VTSLEAKMEKQQQDLKADHATLRLHLKHFPRDVRTLTCRLVFLQSNGTECCPVNWVDYEG 946
+TS A++E++QQ LKADH+TL HLKHFP D+RTLTC+L + QSNGTECCPVNWV++ G
Sbjct: 120 LTSWLAQLEEKQQQLKADHSTLLFHLKHFPMDLRTLTCQLAYFQSNGTECCPVNWVEFGG 179
Query: 947 SCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQKFI 1060
SCYWFSR G WAEA++YCQLENAHL+VIN REEQ F+
Sbjct: 180 SCYWFSRDGLTWAEADQYCQLENAHLLVINSREEQDFV 217
>ref|NP_033844.1| asialoglycoprotein receptor 1 [Mus musculus].
Length = 284
Score = 184 bits (466), Expect = 1e-46
Identities = 91/219 (41%), Positives = 128/219 (58%), Gaps = 2/219 (0%)
Frame = +2
Query: 410 MARDFQDIQQLDSEENDHQLGRGEGPGAGYRPKREDPVWKGTPLPQPLVXXXXXXXXXXX 589
M +D+QD Q LD++ + HQL RG P P P +
Sbjct: 1 MTKDYQDFQHLDNDNDHHQLRRG-------------------PPPTPRLLQRLCSGSRLL 41
Query: 590 XXXXGFNVLMLVAVCVVGSQRTQLQMELQTLKETFSNFXXXXXXXXXXXXXRGGSAGDKV 769
++L+LV VCV+ SQ +QL+ +L L++ FSN +G S G K+
Sbjct: 42 LLSSSLSILLLVVVCVITSQNSQLREDLLALRQNFSNLTVSTEDQVKALSTQGSSVGRKM 101
Query: 770 TSLEAKMEKQQQDLKADHATLRLHLKHFPRDVRTLTCRLVFLQSNGTE--CCPVNWVDYE 943
+E+K+EKQQ+DL DH++L LH+K DVR+L+C++ + NG+E CCP+NWV+YE
Sbjct: 102 KLVESKLEKQQKDLTEDHSSLLLHVKQLVSDVRSLSCQMAAFRGNGSERTCCPINWVEYE 161
Query: 944 GSCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQKFI 1060
GSCYWFS S + W EA+KYCQLENAHLVV+ R+EQ F+
Sbjct: 162 GSCYWFSSSVRPWTEADKYCQLENAHLVVVTSRDEQNFL 200
>ref|NP_660119.1| macrophage galactose N-acetyl-galactosamine specific lectin 2 [Mus
musculus].
Length = 332
Score = 143 bits (360), Expect = 3e-34
Identities = 81/243 (33%), Positives = 122/243 (50%), Gaps = 26/243 (10%)
Frame = +2
Query: 410 MARDFQDIQQLDSEENDHQLGRGEGPGAGYRPKREDPVWKGTPLPQPLVXXXXXXXXXXX 589
M +++ Q L+ EE + ++ G+ G PK +P
Sbjct: 1 MTMRYENFQNLEREEKNQEMRNGDKKGGMESPKF-------ALIPSQSFLWRILSWTHLL 53
Query: 590 XXXXGFNVLMLVAVCVVGSQRTQLQMELQTLKETFSNFXXXXXXXXXXXXXR-------- 745
G ++L+LV + V+GSQ +QL+ +L TL+ N R
Sbjct: 54 LFSLGLSLLLLVVISVIGSQNSQLRRDLGTLRAILDNTTSKIKAEFQSLDSRADNFEKGI 113
Query: 746 ----------------GGSAGDKVTSLEAKMEKQQQDLKADHATLRLHLKHFPRDVRTLT 877
G KVTSLE+ +EK++Q LK D + L H++ D++ LT
Sbjct: 114 SSLKVDVEDHRQELQAGRDLSQKVTSLESTLEKREQALKTDLSDLTDHVQQLETDLKALT 173
Query: 878 CRLVFLQSNGTE--CCPVNWVDYEGSCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQ 1051
C+L L++NG+E CCP++W ++EGSCYWFS S K+W EA+KYC+LEN+HLVV+N EEQ
Sbjct: 174 CQLANLKNNGSEVACCPLHWTEHEGSCYWFSESEKSWPEADKYCRLENSHLVVVNSLEEQ 233
Query: 1052 KFI 1060
F+
Sbjct: 234 NFL 236
>ref|NP_001191181.1| macrophage asialoglycoprotein-binding protein 1 isoform 1 [Mus
musculus].
Length = 305
Score = 140 bits (354), Expect = 1e-33
Identities = 73/179 (40%), Positives = 105/179 (58%), Gaps = 26/179 (14%)
Frame = +2
Query: 602 GFNVLMLVAVCVVGSQRTQLQMELQTLKETFSNFXXXXXXXXXXXXXR------------ 745
G ++L+LV V V+GSQ +QL+ +L TL+ T N R
Sbjct: 43 GLSLLLLVVVSVIGSQNSQLRRDLGTLRATLDNTTSKIKAEFQSLDSRADSFEKGISSLK 102
Query: 746 ------------GGSAGDKVTSLEAKMEKQQQDLKADHATLRLHLKHFPRDVRTLTCRLV 889
G KVTSLE+ +EK++Q LK D + L H++ +D++ LTC+L
Sbjct: 103 VDVEDHRQELQAGRDLSQKVTSLESTVEKREQALKTDLSDLTDHVQQLRKDLKALTCQLA 162
Query: 890 FLQSNGTE--CCPVNWVDYEGSCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQKFI 1060
L++NG+E CCP++W ++EGSCYWFS S K+W EA+KYC+LEN+HLVV+N EEQ F+
Sbjct: 163 NLKNNGSEVACCPLHWTEHEGSCYWFSESEKSWPEADKYCRLENSHLVVVNSLEEQNFL 221
>ref|NP_034926.1| macrophage asialoglycoprotein-binding protein 1 isoform 2 [Mus
musculus].
Length = 304
Score = 140 bits (354), Expect = 1e-33
Identities = 73/179 (40%), Positives = 105/179 (58%), Gaps = 26/179 (14%)
Frame = +2
Query: 602 GFNVLMLVAVCVVGSQRTQLQMELQTLKETFSNFXXXXXXXXXXXXXR------------ 745
G ++L+LV V V+GSQ +QL+ +L TL+ T N R
Sbjct: 42 GLSLLLLVVVSVIGSQNSQLRRDLGTLRATLDNTTSKIKAEFQSLDSRADSFEKGISSLK 101
Query: 746 ------------GGSAGDKVTSLEAKMEKQQQDLKADHATLRLHLKHFPRDVRTLTCRLV 889
G KVTSLE+ +EK++Q LK D + L H++ +D++ LTC+L
Sbjct: 102 VDVEDHRQELQAGRDLSQKVTSLESTVEKREQALKTDLSDLTDHVQQLRKDLKALTCQLA 161
Query: 890 FLQSNGTE--CCPVNWVDYEGSCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQKFI 1060
L++NG+E CCP++W ++EGSCYWFS S K+W EA+KYC+LEN+HLVV+N EEQ F+
Sbjct: 162 NLKNNGSEVACCPLHWTEHEGSCYWFSESEKSWPEADKYCRLENSHLVVVNSLEEQNFL 220
>ref|NP_064332.1| C-type lectin domain family 4 member E [Mus musculus].
Length = 214
Score = 63.5 bits (153), Expect = 3e-10
Identities = 28/70 (40%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
Frame = +2
Query: 857 RDVRTLTCRLVFLQSNGT--ECCPVNWVDYEGSCYWFSRSGKAWAEAEKYCQLENAHLVV 1030
R+++ L+C + +++G+ CCP+NW Y+ SCY+FS + W+ + K C AHLVV
Sbjct: 61 RNIKELSC---YSEASGSVKNCCPLNWKHYQSSCYFFSTTTLTWSSSLKNCSDMGAHLVV 117
Query: 1031 INFREEQKFI 1060
I+ +EEQ+F+
Sbjct: 118 IDTQEEQEFL 127
>ref|NP_083741.1| C-type lectin domain family 4 member G [Mus musculus].
Length = 294
Score = 62.0 bits (149), Expect = 8e-10
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Frame = +2
Query: 776 LEAKMEKQQQDLKADHATLRLHLKHFPRDVRTLTCRL------VFLQSNGTECCPVNWVD 937
++AK+ +Q+ LK + L RD + L V Q++ E CP +W+
Sbjct: 112 IQAKLMEQESILKELQERVTQDLAKASRDRENIRSELFQALEAVKRQNSSCEQCPPSWLP 171
Query: 938 YEGSCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQKFIA 1063
++GSCY+FS + W A+ YC + AHLV++ EQ F++
Sbjct: 172 FQGSCYYFSETQATWDTAQSYCGGQGAHLVIVRGLNEQGFLS 213
>ref|NP_955015.1| C-type lectin domain family 4, member a1 [Mus musculus].
Length = 245
Score = 59.3 bits (142), Expect = 5e-09
Identities = 23/49 (46%), Positives = 33/49 (67%)
Frame = +2
Query: 914 CCPVNWVDYEGSCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQKFI 1060
CCP NW ++ CY+ SR +W+++E+ C L AHL+VI +EEQ FI
Sbjct: 113 CCPKNWKPFDSHCYFTSRDTASWSKSEEKCSLRGAHLLVIQSQEEQDFI 161
>ref|NP_780735.2| C-type lectin domain family 1 member A [Mus musculus].
Length = 269
Score = 53.1 bits (126), Expect = 4e-07
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Frame = +2
Query: 761 DKVTSLEAK---MEKQQQDLKADHATLRLHLKHFPRDVRTLTCRLVFLQSNGTEC--CPV 925
D +T + K M +Q Q L+A + L L+ V CR ++ +S G C CP
Sbjct: 83 DSITEKDEKLGNMSRQLQSLQAQNRKLIETLQQ----VAVKLCRELYNKSGGHRCSPCPE 138
Query: 926 NWVDYEGSCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQKF 1057
W Y CY F + K W E +C +NA ++ I+ +EE F
Sbjct: 139 KWKWYGDKCYQFYKESKNWQSCEYFCLADNATMLKISTQEELDF 182
>ref|NP_058031.2| C-type lectin domain family 4 member F [Mus musculus].
Length = 548
Score = 52.4 bits (124), Expect = 6e-07
Identities = 21/45 (46%), Positives = 29/45 (64%)
Frame = +2
Query: 926 NWVDYEGSCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQKFI 1060
NW + G+ Y+FSR K W EAEK+C + AHL + +EEQ F+
Sbjct: 415 NWKYFNGNFYYFSRDKKPWREAEKFCTSQGAHLASVTSQEEQAFL 459
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,220,969
Number of extensions: 1121159
Number of successful extensions: 5781
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 5749
Number of HSP's successfully gapped: 28
Length of query: 355
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 253
Effective length of database: 12,553,887
Effective search space: 3176133411
Effective search space used: 3176133411
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007486
(1065 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358278.1| PREDICTED: arachidonate 12-lipoxygenase, 12S... 468 e-132
Alignment gi|XP_003131990.2| PREDICTED: asialoglycoprotein receptor 2-lik... 468 e-132
Alignment gi|XP_003354992.1| PREDICTED: asialoglycoprotein receptor 1-lik... 214 5e-56
Alignment gi|XP_003354993.1| PREDICTED: asialoglycoprotein receptor 1-lik... 177 9e-45
Alignment gi|XP_003358279.1| PREDICTED: LOW QUALITY PROTEIN: c-type lecti... 134 1e-31
Alignment gi|NP_001137589.1| C-type lectin domain family 4 member G [Sus ... 66 3e-11
Alignment gi|XP_003123415.1| PREDICTED: c-type lectin domain family 17, m... 58 8e-09
Alignment gi|XP_003126538.1| PREDICTED: killer cell lectin-like receptor ... 54 2e-07
Alignment gi|NP_001138689.1| low affinity immunoglobulin epsilon Fc recep... 53 3e-07
Alignment gi|XP_003126539.1| PREDICTED: c-type lectin domain family 2 mem... 52 4e-07
>ref|XP_003358278.1| PREDICTED: arachidonate 12-lipoxygenase, 12S-type-like [Sus scrofa].
Length = 695
Score = 468 bits (1204), Expect = e-132
Identities = 238/290 (82%), Positives = 238/290 (82%), Gaps = 2/290 (0%)
Frame = +2
Query: 188 SKVPGAGDARIEAPGRSDARAQSPQLDWPSLPRCRSLQHHLSHFFCFLPLLSPGAWAARE 367
S PGA DARIEAPGRSDARAQSPQLDWPSLPRCRSLQHHLSHFFCFLPLLSPGAWAARE
Sbjct: 410 STFPGARDARIEAPGRSDARAQSPQLDWPSLPRCRSLQHHLSHFFCFLPLLSPGAWAARE 469
Query: 368 HDSARHTLNS--PGPSMARDFQDIQQLDSEENDHQLGRGEGPGAGYRPKREDPVWKGTPL 541
HDSARHTLNS PGPSMARDFQDIQQLDSEENDHQLGRG TPL
Sbjct: 470 HDSARHTLNSCSPGPSMARDFQDIQQLDSEENDHQLGRG------------------TPL 511
Query: 542 PQPLVXXXXXXXXXXXXXXXGFNVLMLVAVCVVGSQRTQLQMELQTLKETFSNFXXXXXX 721
PQPLV GFNVLMLVAVCVVGSQRTQLQMELQTLKETFSNF
Sbjct: 512 PQPLVLQRLCSKLRLSLLVLGFNVLMLVAVCVVGSQRTQLQMELQTLKETFSNFSSSLLM 571
Query: 722 XXXXXXXRGGSAGDKVTSLEAKMEKQQQDLKADHATLRLHLKHFPRDVRTLTCRLVFLQS 901
RGGSAGDKVTSLEAKMEKQQQDLKADHATLRLHLKHFPRDVRTLTCRLVFLQS
Sbjct: 572 EMLTLSTRGGSAGDKVTSLEAKMEKQQQDLKADHATLRLHLKHFPRDVRTLTCRLVFLQS 631
Query: 902 NGTECCPVNWVDYEGSCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQ 1051
NGTECCPVNWVDYEGSCYWFSRSGKAWAEAEKYCQLENAHLVVIN REEQ
Sbjct: 632 NGTECCPVNWVDYEGSCYWFSRSGKAWAEAEKYCQLENAHLVVINSREEQ 681
>ref|XP_003131990.2| PREDICTED: asialoglycoprotein receptor 2-like [Sus scrofa].
Length = 285
Score = 468 bits (1203), Expect = e-132
Identities = 237/288 (82%), Positives = 238/288 (82%), Gaps = 2/288 (0%)
Frame = +2
Query: 194 VPGAGDARIEAPGRSDARAQSPQLDWPSLPRCRSLQHHLSHFFCFLPLLSPGAWAAREHD 373
+PGA DARIEAPGRSDARAQSPQLDWPSLPRCRSLQHHLSHFFCFLPLLSPGAWAAREHD
Sbjct: 2 LPGARDARIEAPGRSDARAQSPQLDWPSLPRCRSLQHHLSHFFCFLPLLSPGAWAAREHD 61
Query: 374 SARHTLNS--PGPSMARDFQDIQQLDSEENDHQLGRGEGPGAGYRPKREDPVWKGTPLPQ 547
SARHTLNS PGPSMARDFQDIQQLDSEENDHQLGRG TPLPQ
Sbjct: 62 SARHTLNSCSPGPSMARDFQDIQQLDSEENDHQLGRG------------------TPLPQ 103
Query: 548 PLVXXXXXXXXXXXXXXXGFNVLMLVAVCVVGSQRTQLQMELQTLKETFSNFXXXXXXXX 727
PLV GFNVLMLVAVCVVGSQRTQLQMELQTLKETFSNF
Sbjct: 104 PLVLQRLCSKLRLSLLVLGFNVLMLVAVCVVGSQRTQLQMELQTLKETFSNFSSSLLMEM 163
Query: 728 XXXXXRGGSAGDKVTSLEAKMEKQQQDLKADHATLRLHLKHFPRDVRTLTCRLVFLQSNG 907
RGGSAGDKVTSLEAKMEKQQQDLKADHATLRLHLKHFPRDVRTLTCRLVFLQSNG
Sbjct: 164 LTLSTRGGSAGDKVTSLEAKMEKQQQDLKADHATLRLHLKHFPRDVRTLTCRLVFLQSNG 223
Query: 908 TECCPVNWVDYEGSCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQ 1051
TECCPVNWVDYEGSCYWFSRSGKAWAEAEKYCQLENAHLVVIN REEQ
Sbjct: 224 TECCPVNWVDYEGSCYWFSRSGKAWAEAEKYCQLENAHLVVINSREEQ 271
>ref|XP_003354992.1| PREDICTED: asialoglycoprotein receptor 1-like isoform 1 [Sus scrofa].
Length = 286
Score = 214 bits (546), Expect = 5e-56
Identities = 109/219 (49%), Positives = 139/219 (63%), Gaps = 2/219 (0%)
Frame = +2
Query: 410 MARDFQDIQQLDSEENDHQLGRGEGPGAGYRPKREDPVWKGTPLPQPLVXXXXXXXXXXX 589
M +++QD+Q LD+EEND Q +G P PQ +
Sbjct: 1 MTKEYQDLQHLDNEENDQQHRKG-------------------PPPQQSLFRRLCSGPCLL 41
Query: 590 XXXXGFNVLMLVAVCVVGSQRTQLQMELQTLKETFSNFXXXXXXXXXXXXXRGGSAGDKV 769
G ++L+LV VCV+GSQ ++LQ ELQ L+ETFSN +GG+ G K+
Sbjct: 42 LISMGLSLLLLVVVCVIGSQNSKLQEELQALRETFSNLTASTDAKVKTLSMQGGNVGRKM 101
Query: 770 TSLEAKMEKQQQDLKADHATLRLHLKHFPRDVRTLTCRLVFLQSNGTE--CCPVNWVDYE 943
SLE+++EKQQQDL DH++L LH+K F D+R+L+C++ LQ NG+E CCPVNWVDYE
Sbjct: 102 KSLESQLEKQQQDLSEDHSSLLLHVKQFVSDLRSLSCQMAVLQGNGSERTCCPVNWVDYE 161
Query: 944 GSCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQKFI 1060
GSCYWFSRSGK W EAEKYCQLENAHLVV+ EEQKFI
Sbjct: 162 GSCYWFSRSGKPWPEAEKYCQLENAHLVVVGSWEEQKFI 200
>ref|XP_003354993.1| PREDICTED: asialoglycoprotein receptor 1-like isoform 2 [Sus scrofa].
Length = 247
Score = 177 bits (449), Expect = 9e-45
Identities = 84/138 (60%), Positives = 103/138 (74%), Gaps = 2/138 (1%)
Frame = +2
Query: 653 TQLQMELQTLKETFSNFXXXXXXXXXXXXXRGGSAGDKVTSLEAKMEKQQQDLKADHATL 832
++LQ ELQ L+ETFSN +GG+ G K+ SLE+++EKQQQDL DH++L
Sbjct: 24 SKLQEELQALRETFSNLTASTDAKVKTLSMQGGNVGRKMKSLESQLEKQQQDLSEDHSSL 83
Query: 833 RLHLKHFPRDVRTLTCRLVFLQSNGTE--CCPVNWVDYEGSCYWFSRSGKAWAEAEKYCQ 1006
LH+K F D+R+L+C++ LQ NG+E CCPVNWVDYEGSCYWFSRSGK W EAEKYCQ
Sbjct: 84 LLHVKQFVSDLRSLSCQMAVLQGNGSERTCCPVNWVDYEGSCYWFSRSGKPWPEAEKYCQ 143
Query: 1007 LENAHLVVINFREEQKFI 1060
LENAHLVV+ EEQKFI
Sbjct: 144 LENAHLVVVGSWEEQKFI 161
>ref|XP_003358279.1| PREDICTED: LOW QUALITY PROTEIN: c-type lectin domain family 10 member
A-like [Sus scrofa].
Length = 368
Score = 134 bits (336), Expect = 1e-31
Identities = 70/178 (39%), Positives = 101/178 (56%), Gaps = 25/178 (14%)
Frame = +2
Query: 602 GFNVLMLVAVCVVGSQRTQLQMELQTLKETFSNFXXXXXXXXXXXXXRGGSAGDKVTSLE 781
G ++L+LV +C + SQ ++LQ +L TL TFSNF + S DKV SLE
Sbjct: 107 GLSLLLLVGICAIASQNSKLQRDLVTLTTTFSNFISNTSAEIRALNFQAQSLNDKVLSLE 166
Query: 782 AKMEKQQQDLKAD-----------------------HATLRLHLKHFPRDVRTLTCRLVF 892
+++EK+Q++L+ ++ + L ++ +LTCR+
Sbjct: 167 SRLEKEQKELQTGKGLKKQKPHPGHCPHCPSVCVPGYSEMLLRVQQLVETTDSLTCRMSA 226
Query: 893 LQSNGTE--CCPVNWVDYEGSCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQKFI 1060
L+S+ + CCP +W+++ GSCYWFS S K W EAEK CQLENAHL+VIN REEQ FI
Sbjct: 227 LKSHDSRDSCCPTDWLEHRGSCYWFSGSEKPWXEAEKXCQLENAHLMVINSREEQNFI 284
>ref|NP_001137589.1| C-type lectin domain family 4 member G [Sus scrofa].
Length = 290
Score = 66.2 bits (160), Expect = 3e-11
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Frame = +2
Query: 779 EAKMEKQQQDLKADHATLRLHLKHFPRDVRTLTCRL------VFLQSNGTECCPVNWVDY 940
+AK+ +Q+ LK + L RD + L V Q++ E CP +W+ +
Sbjct: 110 KAKLLEQESALKELSERVTQGLAEAGRDRENIRSELFRELERVRFQNSSCEQCPKSWLPF 169
Query: 941 EGSCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQKFIA 1063
+GSCY+FS G W EA+ +C+ AHLV++ EEQ F++
Sbjct: 170 QGSCYFFSAQGATWVEAQSHCEGAGAHLVIVGGLEEQGFLS 210
>ref|XP_003123415.1| PREDICTED: c-type lectin domain family 17, member A-like [Sus
scrofa].
Length = 327
Score = 58.2 bits (139), Expect = 8e-09
Identities = 22/49 (44%), Positives = 34/49 (69%)
Frame = +2
Query: 917 CPVNWVDYEGSCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQKFIA 1063
CP W+ ++G CY+FS + K+W EA ++CQ +HLV+I+ EQ F+A
Sbjct: 203 CPEGWLPFQGKCYYFSPNTKSWDEARQFCQENYSHLVIISNFAEQNFVA 251
>ref|XP_003126538.1| PREDICTED: killer cell lectin-like receptor subfamily F member 1 [Sus
scrofa].
Length = 233
Score = 53.5 bits (127), Expect = 2e-07
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +2
Query: 917 CPVNWVDYEGSCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQKFI 1060
CP W+ Y+ CYWFS K+W+++ YC +HL++I + E FI
Sbjct: 116 CPSEWLKYQEKCYWFSNEMKSWSDSHGYCLRRKSHLLIIQDQLEMAFI 163
>ref|NP_001138689.1| low affinity immunoglobulin epsilon Fc receptor [Sus scrofa].
Length = 289
Score = 53.1 bits (126), Expect = 3e-07
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Frame = +2
Query: 764 KVTSLEAKMEKQQQDLKADHATLR----------LH-LKHFPRDVRTLTCRLVFLQSNGT 910
++ S E+++ + L+AD + L+ LH L +V L L +SNG+
Sbjct: 103 RMVSQESELFRNLDGLRADLSNLKSYSLNERHRALHSLGRLQEEVEKLWLELH--ESNGS 160
Query: 911 EC--CPVNWVDYEGSCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQKFI 1060
C CP WV ++ CY+F + K W +A+ C LV I+ +EEQ F+
Sbjct: 161 VCNTCPEEWVHFQRKCYYFGETAKKWIQAKYACSSLQGRLVSIHSQEEQDFL 212
>ref|XP_003126539.1| PREDICTED: c-type lectin domain family 2 member B-like [Sus scrofa].
Length = 182
Score = 52.4 bits (124), Expect = 4e-07
Identities = 21/53 (39%), Positives = 32/53 (60%)
Frame = +2
Query: 902 NGTECCPVNWVDYEGSCYWFSRSGKAWAEAEKYCQLENAHLVVINFREEQKFI 1060
N CP NW+ ++ CY+FS+ K W ++ C ENA LV+I+ EE +F+
Sbjct: 66 NAPYFCPDNWIGFQDKCYYFSKEEKNWNSSKDSCLSENADLVLISTPEEMQFL 118
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,922,111
Number of extensions: 888484
Number of successful extensions: 4801
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 4776
Number of HSP's successfully gapped: 13
Length of query: 355
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 255
Effective length of database: 8,854,232
Effective search space: 2257829160
Effective search space used: 2257829160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007486
(1065 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 720 0.0
Sscrofa_Chr03 182 3e-43
>Sscrofa_Chr12
|| Length = 63588571
Score = 720 bits (363), Expect = 0.0
Identities = 386/396 (97%)
Strand = Plus / Minus
Query: 1 aacctcacccgggctcctcctgtnnnnnnnaccttgccacgtgccatgaggagtggggtg 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 54787840 aacctcacccgggctcctcctgtcccccccaccttgccacgtgccatgaggagtggggtg 54787781
Query: 61 actggcttgcgggggtgagggggacagaccaggagtccccttctctgtgaaggacagaga 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 54787780 actggcttgcgggggtgagggggacagaccaggagtcaccttctctgtgaaggacagaga 54787721
Query: 121 cagtcctgccccctgcccccaccacaattcgcctgagttccacctcggtttccactccta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54787720 cagtcctgccccctgcccccaccacaattcgcctgagttccacctcggtttccactccta 54787661
Query: 181 ttgactgtccaaagtcccaggggcaggagatgccaggatagaagcgccgggacgctcaga 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 54787660 ttgactgtccaaagtcccaggggcaagagatgccaggatagaagcgccgggacgctcaga 54787601
Query: 241 tgcacgggctcagagccctcagctggactggccctcgctgccgcgctgccgcagcctcca 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54787600 cgcacgggctcagagccctcagctggactggccctcgctgccgcgctgccgcagcctcca 54787541
Query: 301 gcaccacctgtcccacttcttctgcttcttgcccctccttagccctggggcctgggctgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54787540 gcaccacctgtcccacttcttctgcttcttgcccctccttagccctggggcctgggctgc 54787481
Query: 361 ccgagaacacgactcagcccgccatacccttaacag 396
||||||||||||||||||||||||||||||||||||
Sbjct: 54787480 ccgagaacacgactcagcccgccatacccttaacag 54787445
Score = 276 bits (139), Expect = 2e-71
Identities = 145/147 (98%)
Strand = Plus / Minus
Query: 905 ggcacggaatgctgcccggttaactgggtggactatgaaggcagctgctactggttctct 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54779523 ggcacggaatgctgcccggttaactgggtggactatgaaggcagctgctactggttctct 54779464
Query: 965 cgctctgggaaggcctgggccgaggctgagaagtactgccagctagagaacgcccacctc 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54779463 cgctctgggaaggcctgggccgaggctgagaagtactgccagctagagaacgcccacctc 54779404
Query: 1025 gtggtcatcaacttccgagaggagcag 1051
||||||||||||| | |||||||||||
Sbjct: 54779403 gtggtcatcaactccagagaggagcag 54779377
Score = 262 bits (132), Expect = 4e-67
Identities = 138/140 (98%)
Strand = Plus / Minus
Query: 394 cagcccaggacccagcatggcgagggacttccaggacatccagcagctggactccgagga 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54787134 cagcccaggacccagcatggcgagggacttccaggacatccagcagctggactccgagga 54787075
Query: 454 gaacgaccaccagctgggcagaggtgagggcccaggcgctgggtaccgtcccaagagaga 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54787074 gaacgaccaccagctgggcagaggtgagggcccaggcgctgggtaccgtcccaagagaga 54787015
Query: 514 agacccggtctggaaaggca 533
|||||| ||||||||||||
Sbjct: 54787014 agacccaatctggaaaggca 54786995
Score = 236 bits (119), Expect = 2e-59
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 533 acacctcttccccagcctcttgtgctgcaacgtctctgctccaagctccgcctcagtctg 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54780927 acacctcttccccagcctcttgtgctgcaacgtctctgctccaagctccgcctcagtctg 54780868
Query: 593 cttgtcctgggcttcaacgtcctgatgctggtggctgtctgtgtggtggggtcccaaag 651
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54780867 cttgtcctgggcttcaacgtcctgatgctggtggctgtctgtgtggtggggtcccaaag 54780809
Score = 184 bits (93), Expect = 7e-44
Identities = 96/97 (98%)
Strand = Plus / Minus
Query: 651 gaacacagctgcaaatggaactgcagaccctaaaggaaacgttcagcaacttctcctcca 710
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54780616 gaacacaactgcaaatggaactgcagaccctaaaggaaacgttcagcaacttctcctcca 54780557
Query: 711 gcctcctgatggagatgctgacgctaagcacccgtgg 747
|||||||||||||||||||||||||||||||||||||
Sbjct: 54780556 gcctcctgatggagatgctgacgctaagcacccgtgg 54780520
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 816 cagatcatgccaccttgcgccttcatctgaagcacttcccgagggatgtgcgcacgctga 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54779694 cagatcatgccaccttgcgccttcatctgaagcacttcccgagggatgtgcgcacgctga 54779635
Query: 876 cttgtcggttggtgttcctccagagcaacgg 906
|||||||||||||||||||||||||||||||
Sbjct: 54779634 cttgtcggttggtgttcctccagagcaacgg 54779604
Score = 145 bits (73), Expect = 6e-32
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 746 ggaggcagcgcaggtgacaaggtgacatctctggaagccaagatggaaaaacagcagcaa 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54779919 ggaggcagcgcaggtgacaaggtgacatctctggaagccaagatggaaaaacagcagcaa 54779860
Query: 806 gacctgaaggcag 818
|||||||||||||
Sbjct: 54779859 gacctgaaggcag 54779847
Score = 121 bits (61), Expect = 8e-25
Identities = 98/109 (89%), Gaps = 1/109 (0%)
Strand = Plus / Minus
Query: 943 aggcagctgctactggttctctcgctctgggaaggcctgggccgaggctgagaagtactg 1002
|||||||||||||||||||||| |||||| |||| ||||| | |||||||||||||| ||
Sbjct: 54752566 aggcagctgctactggttctctggctctgagaagccctgg-ctgaggctgagaagtagtg 54752508
Query: 1003 ccagctagagaacgcccacctcgtggtcatcaacttccgagaggagcag 1051
|||||| ||||| ||||||||| |||||||||||| | |||||||||||
Sbjct: 54752507 ccagctggagaatgcccacctcatggtcatcaactccagagaggagcag 54752459
>Sscrofa_Chr03
|| Length = 144787322
Score = 182 bits (92), Expect = 3e-43
Identities = 110/116 (94%)
Strand = Plus / Minus
Query: 914 tgctgcccggttaactgggtggactatgaaggcagctgctactggttctctcgctctggg 973
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 139812080 tgctgcccggttaactgggtggactatgaaggcagctgctactggttctcccgctctggg 139812021
Query: 974 aaggcctgggccgaggctgagaagtactgccagctagagaacgcccacctcgtggt 1029
||| ||||| | ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 139812020 aagccctggccggaggccgagaagtactgccagctggagaacgcccacctcgtggt 139811965
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,001,759
Number of extensions: 304
Number of successful extensions: 304
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 302
Number of HSP's successfully gapped: 9
Length of query: 1065
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1044
Effective length of database: 2,808,413,156
Effective search space: 2931983334864
Effective search space used: 2931983334864
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)