Animal-Genome cDNA 20110601C-007501


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007501
         (1777 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001011679.1| betaine--homocysteine S-methyltransferase 1 ...   731   0.0  

>ref|NP_001011679.1| betaine--homocysteine S-methyltransferase 1 [Bos taurus].
          Length = 407

 Score =  731 bits (1886), Expect = 0.0
 Identities = 354/378 (93%), Positives = 361/378 (95%)
 Frame = +2

Query: 611  MAPVGDKKAKKGILERLNSGEVVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 790
            MAP G K  KKGILERLNSGEV+IGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH
Sbjct: 1    MAPAGGKNVKKGILERLNSGEVIIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 60

Query: 791  REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG 970
            REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG
Sbjct: 61   REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG 120

Query: 971  GVSQTPSYLSCKSETEVKKVFRQQLEVFMKKNVDFLIAEYFEHXXXXXXXXXXLKASGKP 1150
            GVSQTPSYLSCKSETEVKKVF+QQLEVF+KKNVDFLIAEYFEH          LKASGKP
Sbjct: 121  GVSQTPSYLSCKSETEVKKVFQQQLEVFVKKNVDFLIAEYFEHVEEAVWAVEALKASGKP 180

Query: 1151 VAATMCIGPEGDLHGVTPGQCAVRLVKAGASIVGVNCHFDPTISLQTVKLMKEGLQAAGL 1330
            VAATMCIGPEGDLH VTPG+CAVRLVKAGASIVGVNCHFDPTISLQTVKLMKEGL+AAGL
Sbjct: 181  VAATMCIGPEGDLHSVTPGECAVRLVKAGASIVGVNCHFDPTISLQTVKLMKEGLEAAGL 240

Query: 1331 KAHLMSQPLAYHTPDCGKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 1510
            KAHLMSQPLAYHTPDCGKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC
Sbjct: 241  KAHLMSQPLAYHTPDCGKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 300

Query: 1511 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSALDMHTKPWVRARARKEYWENLRIASG 1690
            GFEPYHIRAIAEELAPERGFLP ASEKHGSWGS LDMHTKPW+RARARKEYWENL+IASG
Sbjct: 301  GFEPYHIRAIAEELAPERGFLPLASEKHGSWGSGLDMHTKPWIRARARKEYWENLQIASG 360

Query: 1691 RPYNPSMSKPDAWGVTKG 1744
            RPYNPSMSKPDAWGVTKG
Sbjct: 361  RPYNPSMSKPDAWGVTKG 378


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 76,767,165
Number of extensions: 2393728
Number of successful extensions: 9200
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9160
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 484
Effective length of database: 14,107,870
Effective search space: 6828209080
Effective search space used: 6828209080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007501
         (1777 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_536313.2| PREDICTED: similar to Betaine--homocysteine S-m...   733   0.0  
Alignment   gi|XP_546051.2| PREDICTED: similar to betaine-homocysteine meth...   568   e-162

>ref|XP_536313.2| PREDICTED: similar to Betaine--homocysteine S-methyltransferase
            [Canis familiaris].
          Length = 407

 Score =  733 bits (1891), Expect = 0.0
 Identities = 355/378 (93%), Positives = 363/378 (96%)
 Frame = +2

Query: 611  MAPVGDKKAKKGILERLNSGEVVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 790
            MAPVG +KA++GILERLNSGEVVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH
Sbjct: 1    MAPVGGRKARRGILERLNSGEVVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 60

Query: 791  REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG 970
            REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG
Sbjct: 61   REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG 120

Query: 971  GVSQTPSYLSCKSETEVKKVFRQQLEVFMKKNVDFLIAEYFEHXXXXXXXXXXLKASGKP 1150
            GVSQTPSYLSCKSETEVKKVF+QQLEVF+KKNVDFLIAEYFEH          LKASGKP
Sbjct: 121  GVSQTPSYLSCKSETEVKKVFQQQLEVFVKKNVDFLIAEYFEHVEEAVWAVEALKASGKP 180

Query: 1151 VAATMCIGPEGDLHGVTPGQCAVRLVKAGASIVGVNCHFDPTISLQTVKLMKEGLQAAGL 1330
            VAATMCIGPEGDLHGV+PG+CAVRLVKAGASIVGVNCHFDPTISLQTVKLMKEGL AA L
Sbjct: 181  VAATMCIGPEGDLHGVSPGECAVRLVKAGASIVGVNCHFDPTISLQTVKLMKEGLDAARL 240

Query: 1331 KAHLMSQPLAYHTPDCGKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 1510
            KAHLMSQPLAYHTPDC KQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC
Sbjct: 241  KAHLMSQPLAYHTPDCNKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 300

Query: 1511 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSALDMHTKPWVRARARKEYWENLRIASG 1690
            GFEPYHIRAIAEELAPERGFLPPASEKHGSWGS LDMHTKPW+RARARKEYWENLRIASG
Sbjct: 301  GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLDMHTKPWIRARARKEYWENLRIASG 360

Query: 1691 RPYNPSMSKPDAWGVTKG 1744
            RPYNPSMSKPDAWGVTKG
Sbjct: 361  RPYNPSMSKPDAWGVTKG 378


>ref|XP_546051.2| PREDICTED: similar to betaine-homocysteine methyltransferase 2 [Canis
            familiaris].
          Length = 363

 Score =  568 bits (1463), Expect = e-162
 Identities = 276/372 (74%), Positives = 312/372 (83%)
 Frame = +2

Query: 611  MAPVGDKKAKKGILERLNSGEVVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 790
            MAPVG   AKKGILERL+SGEVV+GDG F+  LEKRGYVKAG WTPEA V+HP+AVRQLH
Sbjct: 1    MAPVGGPGAKKGILERLDSGEVVVGDGSFLITLEKRGYVKAGLWTPEAIVDHPDAVRQLH 60

Query: 791  REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG 970
             EFLRAGSNVMQTFTF ASED + ++          + VN AACD+AR+VA +GDALVAG
Sbjct: 61   MEFLRAGSNVMQTFTFSASEDNMGSKW---------EDVNAAACDLAREVAGKGDALVAG 111

Query: 971  GVSQTPSYLSCKSETEVKKVFRQQLEVFMKKNVDFLIAEYFEHXXXXXXXXXXLKASGKP 1150
            G+SQT  Y   K E  VKK+F+ QLEVF++KNVDFLIAEYFEH          LK SGKP
Sbjct: 112  GISQTSVYRHHKDEARVKKLFQLQLEVFIRKNVDFLIAEYFEHAEEAVWAVEVLKESGKP 171

Query: 1151 VAATMCIGPEGDLHGVTPGQCAVRLVKAGASIVGVNCHFDPTISLQTVKLMKEGLQAAGL 1330
            VA TMCIGP+GD+ GV PG+CAV+LVKAGA+IVGVNC F P+ SL+T+KLMKEGLQAAGL
Sbjct: 172  VAVTMCIGPDGDMCGVKPGECAVKLVKAGAAIVGVNCRFGPSTSLKTMKLMKEGLQAAGL 231

Query: 1331 KAHLMSQPLAYHTPDCGKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 1510
            +AHL+ Q L +HTPDCGK G +DLPE+PFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC
Sbjct: 232  QAHLIVQSLGFHTPDCGKGGVVDLPEYPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 291

Query: 1511 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSALDMHTKPWVRARARKEYWENLRIASG 1690
            GFEPYHIRAIAEELAPERGFLPPASEKHGSWGS L+MHTKPW+RARAR+EYWENL  ASG
Sbjct: 292  GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLNMHTKPWIRARARREYWENLLPASG 351

Query: 1691 RPYNPSMSKPDA 1726
            RP+ PS+S+PDA
Sbjct: 352  RPFCPSLSQPDA 363


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 80,093,306
Number of extensions: 2456819
Number of successful extensions: 9354
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9240
Number of HSP's successfully gapped: 2
Length of query: 592
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 484
Effective length of database: 15,274,216
Effective search space: 7392720544
Effective search space used: 7392720544
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007501
         (1777 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001704.2| betaine--homocysteine S-methyltransferase 1 [Ho...   723   0.0  
Alignment   gi|NP_060084.2| betaine--homocysteine S-methyltransferase 2 iso...   573   e-163
Alignment   gi|NP_001171476.1| betaine--homocysteine S-methyltransferase 2 ...   369   e-102

>ref|NP_001704.2| betaine--homocysteine S-methyltransferase 1 [Homo sapiens].
          Length = 406

 Score =  723 bits (1867), Expect(2) = 0.0
 Identities = 351/378 (92%), Positives = 358/378 (94%)
 Frame = +2

Query: 611  MAPVGDKKAKKGILERLNSGEVVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 790
            M PVG KKAKKGILERLN+GE+VIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH
Sbjct: 1    MPPVGGKKAKKGILERLNAGEIVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 60

Query: 791  REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG 970
            REFLRAGSNVMQTFTFYASEDKLENRGNYV EKISGQ+VNEAACDIARQVADEGDALVAG
Sbjct: 61   REFLRAGSNVMQTFTFYASEDKLENRGNYVLEKISGQEVNEAACDIARQVADEGDALVAG 120

Query: 971  GVSQTPSYLSCKSETEVKKVFRQQLEVFMKKNVDFLIAEYFEHXXXXXXXXXXLKASGKP 1150
            GVSQTPSYLSCKSETEVKKVF QQLEVFMKKNVDFLIAEYFEH          L ASGKP
Sbjct: 121  GVSQTPSYLSCKSETEVKKVFLQQLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIASGKP 180

Query: 1151 VAATMCIGPEGDLHGVTPGQCAVRLVKAGASIVGVNCHFDPTISLQTVKLMKEGLQAAGL 1330
            VAATMCIGPEGDLHGV PG+CAVRLVKAGASI+GVNCHFDPTISL+TVKLMKEGL+AA L
Sbjct: 181  VAATMCIGPEGDLHGVPPGECAVRLVKAGASIIGVNCHFDPTISLKTVKLMKEGLEAARL 240

Query: 1331 KAHLMSQPLAYHTPDCGKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 1510
            KAHLMSQPLAYHTPDC KQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC
Sbjct: 241  KAHLMSQPLAYHTPDCNKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 300

Query: 1511 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSALDMHTKPWVRARARKEYWENLRIASG 1690
            GFEPYHIRAIAEELAPERGFLPPASEKHGSWGS LDMHTKPWVRARARKEYWENLRIASG
Sbjct: 301  GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLDMHTKPWVRARARKEYWENLRIASG 360

Query: 1691 RPYNPSMSKPDAWGVTKG 1744
            RPYNPSMSKPD WGVTKG
Sbjct: 361  RPYNPSMSKPDGWGVTKG 378



 Score = 25.4 bits (54), Expect(2) = 0.0
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +1

Query: 1729 GSDQRTAELMQQKEAT 1776
            G  + TAELMQQKEAT
Sbjct: 374  GVTKGTAELMQQKEAT 389


>ref|NP_060084.2| betaine--homocysteine S-methyltransferase 2 isoform 1 [Homo sapiens].
          Length = 363

 Score =  573 bits (1476), Expect = e-163
 Identities = 278/371 (74%), Positives = 307/371 (82%)
 Frame = +2

Query: 611  MAPVGDKKAKKGILERLNSGEVVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 790
            MAP G   AKKGILERL SGEVVIGDG F+  LEKRGYVKAG WTPEA +EHP+AVRQLH
Sbjct: 1    MAPAGRPGAKKGILERLESGEVVIGDGSFLITLEKRGYVKAGLWTPEAVIEHPDAVRQLH 60

Query: 791  REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG 970
             EFLRAGSNVMQTFTF ASED +E++          + VN AACD+AR+VA +GDALVAG
Sbjct: 61   MEFLRAGSNVMQTFTFSASEDNMESKW---------EDVNAAACDLAREVAGKGDALVAG 111

Query: 971  GVSQTPSYLSCKSETEVKKVFRQQLEVFMKKNVDFLIAEYFEHXXXXXXXXXXLKASGKP 1150
            G+ QT  Y   K E  +KK+FRQQLEVF  KNVDFLIAEYFEH          LK S +P
Sbjct: 112  GICQTSIYKYQKDEARIKKLFRQQLEVFAWKNVDFLIAEYFEHVEEAVWAVEVLKESDRP 171

Query: 1151 VAATMCIGPEGDLHGVTPGQCAVRLVKAGASIVGVNCHFDPTISLQTVKLMKEGLQAAGL 1330
            VA TMCIGPEGD+H +TPG+CAVRLVKAGASIVGVNC F P  SL+T++LMKEGL+ AGL
Sbjct: 172  VAVTMCIGPEGDMHDITPGECAVRLVKAGASIVGVNCRFGPDTSLKTMELMKEGLEWAGL 231

Query: 1331 KAHLMSQPLAYHTPDCGKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 1510
            KAHLM QPL +H PDCGK+GF+DLPE+PFGLE RVATRWDIQKYAREAYNLGVRYIGGCC
Sbjct: 232  KAHLMVQPLGFHAPDCGKEGFVDLPEYPFGLESRVATRWDIQKYAREAYNLGVRYIGGCC 291

Query: 1511 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSALDMHTKPWVRARARKEYWENLRIASG 1690
            GFEPYHIRAIAEELAPERGFLPPASEKHGSWGS LDMHTKPW+RARAR+EYWENL  ASG
Sbjct: 292  GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLDMHTKPWIRARARREYWENLLPASG 351

Query: 1691 RPYNPSMSKPD 1723
            RP+ PS+SKPD
Sbjct: 352  RPFCPSLSKPD 362


>ref|NP_001171476.1| betaine--homocysteine S-methyltransferase 2 isoform 2 [Homo sapiens].
          Length = 299

 Score =  369 bits (947), Expect = e-102
 Identities = 170/218 (77%), Positives = 189/218 (86%)
 Frame = +2

Query: 1070 DFLIAEYFEHXXXXXXXXXXLKASGKPVAATMCIGPEGDLHGVTPGQCAVRLVKAGASIV 1249
            D + ++YFEH          LK S +PVA TMCIGPEGD+H +TPG+CAVRLVKAGASIV
Sbjct: 81   DNMESKYFEHVEEAVWAVEVLKESDRPVAVTMCIGPEGDMHDITPGECAVRLVKAGASIV 140

Query: 1250 GVNCHFDPTISLQTVKLMKEGLQAAGLKAHLMSQPLAYHTPDCGKQGFIDLPEFPFGLEP 1429
            GVNC F P  SL+T++LMKEGL+ AGLKAHLM QPL +H PDCGK+GF+DLPE+PFGLE 
Sbjct: 141  GVNCRFGPDTSLKTMELMKEGLEWAGLKAHLMVQPLGFHAPDCGKEGFVDLPEYPFGLES 200

Query: 1430 RVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPPASEKHGSWGS 1609
            RVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPPASEKHGSWGS
Sbjct: 201  RVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPPASEKHGSWGS 260

Query: 1610 ALDMHTKPWVRARARKEYWENLRIASGRPYNPSMSKPD 1723
             LDMHTKPW+RARAR+EYWENL  ASGRP+ PS+SKPD
Sbjct: 261  GLDMHTKPWIRARARREYWENLLPASGRPFCPSLSKPD 298


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 78,508,075
Number of extensions: 2406507
Number of successful extensions: 8895
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8831
Number of HSP's successfully gapped: 5
Length of query: 592
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 484
Effective length of database: 14,737,052
Effective search space: 7132733168
Effective search space used: 7132733168
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007501
         (1777 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_057877.1| betaine--homocysteine S-methyltransferase 1 [Mu...   729   0.0  
Alignment   gi|NP_075022.2| betaine--homocysteine S-methyltransferase 2 [Mu...   553   e-157

>ref|NP_057877.1| betaine--homocysteine S-methyltransferase 1 [Mus musculus].
          Length = 407

 Score =  729 bits (1882), Expect = 0.0
 Identities = 352/378 (93%), Positives = 362/378 (95%)
 Frame = +2

Query: 611  MAPVGDKKAKKGILERLNSGEVVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 790
            MAPV  KKAKKGILERLN+GEVVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH
Sbjct: 1    MAPVAGKKAKKGILERLNAGEVVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 60

Query: 791  REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG 970
            REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG
Sbjct: 61   REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG 120

Query: 971  GVSQTPSYLSCKSETEVKKVFRQQLEVFMKKNVDFLIAEYFEHXXXXXXXXXXLKASGKP 1150
            GVSQTPSYLSCKSE EVKK+FRQQLEVFMKKNVDFLIAEYFEH          LKASGKP
Sbjct: 121  GVSQTPSYLSCKSEVEVKKIFRQQLEVFMKKNVDFLIAEYFEHVEEAVWAVEALKASGKP 180

Query: 1151 VAATMCIGPEGDLHGVTPGQCAVRLVKAGASIVGVNCHFDPTISLQTVKLMKEGLQAAGL 1330
            VAATMCIGPEGDLHGV PG+CAVRLVKAGASIVGVNCHFDP++SLQTVKLMKEGL+AA L
Sbjct: 181  VAATMCIGPEGDLHGVPPGECAVRLVKAGASIVGVNCHFDPSVSLQTVKLMKEGLEAARL 240

Query: 1331 KAHLMSQPLAYHTPDCGKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 1510
            KA+LMSQPLAYHTPDCGKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC
Sbjct: 241  KAYLMSQPLAYHTPDCGKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 300

Query: 1511 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSALDMHTKPWVRARARKEYWENLRIASG 1690
            GFEPYHIRAIAEELAPERGFLPPASEKHGSWGS LDMHTKPW+RARARKEYW+NLRIASG
Sbjct: 301  GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLDMHTKPWIRARARKEYWQNLRIASG 360

Query: 1691 RPYNPSMSKPDAWGVTKG 1744
            RPYNPSMS+PDAWGVTKG
Sbjct: 361  RPYNPSMSRPDAWGVTKG 378


>ref|NP_075022.2| betaine--homocysteine S-methyltransferase 2 [Mus musculus].
          Length = 363

 Score =  553 bits (1424), Expect = e-157
 Identities = 265/372 (71%), Positives = 303/372 (81%)
 Frame = +2

Query: 611  MAPVGDKKAKKGILERLNSGEVVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 790
            MAP G  +AKKGILERL+SGEVV+GD GF+F LEKRG+VKAG WTPEA VEHP AVRQLH
Sbjct: 1    MAPAGSTRAKKGILERLDSGEVVVGDSGFLFTLEKRGFVKAGLWTPEAVVEHPSAVRQLH 60

Query: 791  REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG 970
             EFLRAG++V+QTFTF A+ED + ++          + VN AACD+A++VA  G ALVAG
Sbjct: 61   TEFLRAGADVLQTFTFSATEDNMASKW---------EAVNAAACDLAQEVAGGGGALVAG 111

Query: 971  GVSQTPSYLSCKSETEVKKVFRQQLEVFMKKNVDFLIAEYFEHXXXXXXXXXXLKASGKP 1150
            G+ QT  Y   K ET +K +FR QLEVF +KNVDFLIAEYFEH          L+  G P
Sbjct: 112  GICQTSLYKYHKDETRIKNIFRLQLEVFARKNVDFLIAEYFEHVEEAVWAVEVLREVGAP 171

Query: 1151 VAATMCIGPEGDLHGVTPGQCAVRLVKAGASIVGVNCHFDPTISLQTVKLMKEGLQAAGL 1330
            VA TMCIGPEGD+H VTPG+CAV+L +AGA I+GVNC F P  SLQT+KLMKEGL+ A L
Sbjct: 172  VAVTMCIGPEGDMHDVTPGECAVKLARAGADIIGVNCRFGPWTSLQTMKLMKEGLRDASL 231

Query: 1331 KAHLMSQPLAYHTPDCGKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 1510
            +AHLM Q L +HTPDCGK GF+DLPE+PFGLEPRVATRWDIQKYAREAYNLG+RYIGGCC
Sbjct: 232  QAHLMVQCLGFHTPDCGKGGFVDLPEYPFGLEPRVATRWDIQKYAREAYNLGIRYIGGCC 291

Query: 1511 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSALDMHTKPWVRARARKEYWENLRIASG 1690
            GFEPYHIRAIAEELAPERGFLPPASEKHGSWGS L+MHTKPW+RARAR+EYWENL  ASG
Sbjct: 292  GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLNMHTKPWIRARARREYWENLLPASG 351

Query: 1691 RPYNPSMSKPDA 1726
            RP+ PS+SKPDA
Sbjct: 352  RPFCPSLSKPDA 363


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 66,392,922
Number of extensions: 2010640
Number of successful extensions: 7309
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7267
Number of HSP's successfully gapped: 2
Length of query: 592
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 485
Effective length of database: 12,403,707
Effective search space: 6015797895
Effective search space used: 6015797895
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007501
         (1777 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001186971.1| betaine--homocysteine S-methyltransferase 1 ...   754   0.0  
Alignment   gi|NP_001191700.1| betaine--homocysteine S-methyltransferase 2 ...   574   e-164
Alignment   gi|XP_003123783.2| PREDICTED: betaine--homocysteine S-methyltra...   369   e-102
Alignment   gi|XP_003123788.2| PREDICTED: betaine--homocysteine S-methyltra...   366   e-101

>ref|NP_001186971.1| betaine--homocysteine S-methyltransferase 1 [Sus scrofa].
          Length = 407

 Score =  754 bits (1946), Expect = 0.0
 Identities = 368/378 (97%), Positives = 368/378 (97%)
 Frame = +2

Query: 611  MAPVGDKKAKKGILERLNSGEVVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 790
            MAPVGDKKAKKGILERLNSGEVVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH
Sbjct: 1    MAPVGDKKAKKGILERLNSGEVVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 60

Query: 791  REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG 970
            REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG
Sbjct: 61   REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG 120

Query: 971  GVSQTPSYLSCKSETEVKKVFRQQLEVFMKKNVDFLIAEYFEHXXXXXXXXXXLKASGKP 1150
            GVSQTPSYLSCKSETEVKKVFRQQLEVFMKKNVDFLIAEYFEH          LKASGKP
Sbjct: 121  GVSQTPSYLSCKSETEVKKVFRQQLEVFMKKNVDFLIAEYFEHVEEAVWAVEALKASGKP 180

Query: 1151 VAATMCIGPEGDLHGVTPGQCAVRLVKAGASIVGVNCHFDPTISLQTVKLMKEGLQAAGL 1330
            VAATMCIGPEGDLHGVTPGQCAVRLVKAGASIVGVNCHFDPTISLQTVKLMKEGLQAAGL
Sbjct: 181  VAATMCIGPEGDLHGVTPGQCAVRLVKAGASIVGVNCHFDPTISLQTVKLMKEGLQAAGL 240

Query: 1331 KAHLMSQPLAYHTPDCGKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 1510
            KAHLMSQPLAYHTPDCGKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC
Sbjct: 241  KAHLMSQPLAYHTPDCGKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 300

Query: 1511 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSALDMHTKPWVRARARKEYWENLRIASG 1690
            GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSALDMHTKPWVRARARKEYWENLRIASG
Sbjct: 301  GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSALDMHTKPWVRARARKEYWENLRIASG 360

Query: 1691 RPYNPSMSKPDAWGVTKG 1744
            RPYNPSMSKPDAWGVTKG
Sbjct: 361  RPYNPSMSKPDAWGVTKG 378


>ref|NP_001191700.1| betaine--homocysteine S-methyltransferase 2 [Sus scrofa].
          Length = 363

 Score =  574 bits (1479), Expect = e-164
 Identities = 276/371 (74%), Positives = 312/371 (84%)
 Frame = +2

Query: 611  MAPVGDKKAKKGILERLNSGEVVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 790
            MAP G  +AKKGILERL++GEVV+GDGGF+  LEKRGYVKAG WTPEA VEHP AVRQLH
Sbjct: 1    MAPAGSPRAKKGILERLDAGEVVVGDGGFLLTLEKRGYVKAGLWTPEAVVEHPNAVRQLH 60

Query: 791  REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG 970
             EFLRAGSNVMQTFTF A+ED +E++          + VN AACD+A++VA +GDALVAG
Sbjct: 61   MEFLRAGSNVMQTFTFSANEDNMESQW---------EAVNAAACDLAQEVAGKGDALVAG 111

Query: 971  GVSQTPSYLSCKSETEVKKVFRQQLEVFMKKNVDFLIAEYFEHXXXXXXXXXXLKASGKP 1150
            G+ QT  Y   K E  +KK+FR QLEVF++KNVDFLIAEYFE+          LK SGKP
Sbjct: 112  GLCQTSLYKHHKDEDRIKKLFRLQLEVFVRKNVDFLIAEYFEYAEEAVWAVEVLKESGKP 171

Query: 1151 VAATMCIGPEGDLHGVTPGQCAVRLVKAGASIVGVNCHFDPTISLQTVKLMKEGLQAAGL 1330
            VAATMCIGPEGD+HGVTPG+CAV+LVKAGASI+GVNC F P  SL+T++LMKEGLQAAGL
Sbjct: 172  VAATMCIGPEGDMHGVTPGECAVKLVKAGASIIGVNCRFGPWTSLKTMRLMKEGLQAAGL 231

Query: 1331 KAHLMSQPLAYHTPDCGKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 1510
            KAHLM Q L +H PDCGK GF+DLPE+PF LEPRVATRWDIQKYAREAYNLG+RYIGGCC
Sbjct: 232  KAHLMVQSLVFHMPDCGKGGFVDLPEYPFALEPRVATRWDIQKYAREAYNLGIRYIGGCC 291

Query: 1511 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSALDMHTKPWVRARARKEYWENLRIASG 1690
            GFEPYHIRAIAEELAPERGFLPPASEKHGSWGS L+MHTKPW+RARAR+EYWENL  ASG
Sbjct: 292  GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLNMHTKPWIRARARREYWENLLPASG 351

Query: 1691 RPYNPSMSKPD 1723
            RP+ PS+SKPD
Sbjct: 352  RPFCPSLSKPD 362


>ref|XP_003123783.2| PREDICTED: betaine--homocysteine S-methyltransferase 1-like, partial
            [Sus scrofa].
          Length = 264

 Score =  369 bits (946), Expect = e-102
 Identities = 173/175 (98%), Positives = 173/175 (98%)
 Frame = +2

Query: 1220 RLVKAGASIVGVNCHFDPTISLQTVKLMKEGLQAAGLKAHLMSQPLAYHTPDCGKQGFID 1399
            RL K GASIVGVNCHFDPTISLQTVKLMKEGLQAAGLKAHLMSQPLAYHTPDCGKQGFID
Sbjct: 61   RLQKKGASIVGVNCHFDPTISLQTVKLMKEGLQAAGLKAHLMSQPLAYHTPDCGKQGFID 120

Query: 1400 LPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPP 1579
            LPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPP
Sbjct: 121  LPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPP 180

Query: 1580 ASEKHGSWGSALDMHTKPWVRARARKEYWENLRIASGRPYNPSMSKPDAWGVTKG 1744
            ASEKHGSWGSALDMHTKPWVRARARKEYWENLRIASGRPYNPSMSKPDAWGVTKG
Sbjct: 181  ASEKHGSWGSALDMHTKPWVRARARKEYWENLRIASGRPYNPSMSKPDAWGVTKG 235


>ref|XP_003123788.2| PREDICTED: betaine--homocysteine S-methyltransferase 1-like [Sus
            scrofa].
          Length = 205

 Score =  366 bits (939), Expect = e-101
 Identities = 171/171 (100%), Positives = 171/171 (100%)
 Frame = +2

Query: 1232 AGASIVGVNCHFDPTISLQTVKLMKEGLQAAGLKAHLMSQPLAYHTPDCGKQGFIDLPEF 1411
            AGASIVGVNCHFDPTISLQTVKLMKEGLQAAGLKAHLMSQPLAYHTPDCGKQGFIDLPEF
Sbjct: 6    AGASIVGVNCHFDPTISLQTVKLMKEGLQAAGLKAHLMSQPLAYHTPDCGKQGFIDLPEF 65

Query: 1412 PFGLEPRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPPASEK 1591
            PFGLEPRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPPASEK
Sbjct: 66   PFGLEPRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPPASEK 125

Query: 1592 HGSWGSALDMHTKPWVRARARKEYWENLRIASGRPYNPSMSKPDAWGVTKG 1744
            HGSWGSALDMHTKPWVRARARKEYWENLRIASGRPYNPSMSKPDAWGVTKG
Sbjct: 126  HGSWGSALDMHTKPWVRARARKEYWENLRIASGRPYNPSMSKPDAWGVTKG 176


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 49,542,302
Number of extensions: 1540209
Number of successful extensions: 5846
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5822
Number of HSP's successfully gapped: 4
Length of query: 592
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 487
Effective length of database: 8,729,747
Effective search space: 4251386789
Effective search space used: 4251386789
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007501
         (1777 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr02                                                        1152   0.0  
gb|JH118568.1| Sus scrofa unplaced genomic scaffold ChrUScaf1048     1144   0.0  

>Sscrofa_Chr02 
||          Length = 162569375

 Score = 1152 bits (581), Expect = 0.0
 Identities = 633/655 (96%), Gaps = 12/655 (1%)
 Strand = Plus / Minus

                                                                            
Query: 2        ttttgaacacatgcactaatgcagggtcagtatcagacttttctgtaaaggccatatttt 61
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89431635 ttttgaacacatgcactaatgcagggtcagtatcagacttttctgtaaaggccatatttt 89431576

                                                                            
Query: 62       gtttggatacataaccactggacgtataatcacagagg------------ctgaagttct 109
                ||| | || |||||||||||||||||||||||||||||            ||||||||||
Sbjct: 89431575 gttcgaatccataaccactggacgtataatcacagaggtcacactttaggctgaagttct 89431516

                                                                            
Query: 110      tccagggcatggcctcctcgttcaagaatcttgtatcctcggcctttgacaaatatttgg 169
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89431515 tccagggcatggcctcctcgttcaagaatcttgtatcctcggcctttgacaaatatttgg 89431456

                                                                            
Query: 170      gcattggatggcgtttttaggggcctggtctggcaacctaagtaatggtaacaggatccc 229
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89431455 gcattggatggcgtttttaggggcctggtctggcaacctaagtaatggtaacaggatccc 89431396

                                                                            
Query: 230      aggcaaggaggagtacatcaggatttctcctcgagaagaaaagagggggtgggcacaggt 289
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89431395 aggcaaggaggagtacatcaggatttctcctcgagaagaaaagagggggtgggcacaggt 89431336

                                                                            
Query: 290      agagctgaaacccgagcagatggcaacctacttgnnnnnnncttcttaacttacttctgg 349
                ||||||||||||||||||||||||||||||||||       |||||||||||||||||||
Sbjct: 89431335 agagctgaaacccgagcagatggcaacctacttgtttttttcttcttaacttacttctgg 89431276

                                                                            
Query: 350      acgagttcacctatttgcaagaataatctcgatcactccctcaggaggccgattccagag 409
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89431275 acgagttcacctatttgcaagaataatctcgatcactccctcaggaggccgattccagag 89431216

                                                                            
Query: 410      gagccaggataaaaggctggggggcgtgttccctgccggaggcccgcgttggaccgcggg 469
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89431215 gagccaggataaaaggctggggggcgtgttccctgccggaggcccgcgttggaccgcggg 89431156

                                                                            
Query: 470      gaggctggggaaacctaccgcgtgagagctgcaggtataaagagctccgctgccgccgct 529
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89431155 gaggctggggaaacctaccgcgtgagagctgcaggtataaagagctccgctgccgccgct 89431096

                                                                            
Query: 530      gggcagctgcaggcttcgaaagggaaacctcgtcggttccaatccaaatccgttttcgag 589
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89431095 gggcagctgcaggcttcgaaagggaaacctcgtcggttccaatccaaatccgttttcgag 89431036

                                                                       
Query: 590      taccatccggacacctcgaatatggctccggttggggacaaaaaggccaagaagg 644
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89431035 taccatccggacacctcgaatatggctccggttggggacaaaaaggccaagaagg 89430981



 Score =  450 bits (227), Expect = e-123
 Identities = 230/231 (99%)
 Strand = Plus / Minus

                                                                            
Query: 1418     ggactggagcccagagttgcaaccagatgggacattcaaaaatacgccagagaggcctac 1477
                |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 89411035 ggactggagcccagagttgcaaccagatgggatattcaaaaatacgccagagaggcctac 89410976

                                                                            
Query: 1478     aacctgggggtcaggtacataggcgggtgctgtggatttgagccctaccacatcagggcc 1537
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89410975 aacctgggggtcaggtacataggcgggtgctgtggatttgagccctaccacatcagggcc 89410916

                                                                            
Query: 1538     attgcagaggagctggccccagaaaggggatttttgcctccagcttcagagaaacatggc 1597
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89410915 attgcagaggagctggccccagaaaggggatttttgcctccagcttcagagaaacatggc 89410856

                                                                   
Query: 1598     agctggggaagtgctttggacatgcacaccaagccctgggttagagccagg 1648
                |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89410855 agctggggaagtgctttggacatgcacaccaagccctgggttagagccagg 89410805



 Score =  381 bits (192), Expect = e-103
 Identities = 192/192 (100%)
 Strand = Plus / Minus

                                                                            
Query: 896      gggcagaaagtcaatgaagctgcttgtgacattgcccggcaagtggctgatgagggagat 955
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89417805 gggcagaaagtcaatgaagctgcttgtgacattgcccggcaagtggctgatgagggagat 89417746

                                                                            
Query: 956      gctttggtggcaggaggtgtgagccagacaccttcgtacctcagctgcaagagcgaaacg 1015
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89417745 gctttggtggcaggaggtgtgagccagacaccttcgtacctcagctgcaagagcgaaacg 89417686

                                                                            
Query: 1016     gaagtcaaaaaagtgtttcggcagcagttagaggtctttatgaagaagaacgttgacttc 1075
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89417685 gaagtcaaaaaagtgtttcggcagcagttagaggtctttatgaagaagaacgttgacttc 89417626

                            
Query: 1076     ttgattgcagag 1087
                ||||||||||||
Sbjct: 89417625 ttgattgcagag 89417614



 Score =  375 bits (189), Expect = e-101
 Identities = 219/229 (95%)
 Strand = Plus / Minus

                                                                            
Query: 1420     actggagcccagagttgcaaccagatgggacattcaaaaatacgccagagaggcctacaa 1479
                |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 89464646 actggagcccagagttgcaaccagatgggacattcaaaaatatgccagagaagcctacaa 89464587

                                                                            
Query: 1480     cctgggggtcaggtacataggcgggtgctgtggatttgagccctaccacatcagggccat 1539
                ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 89464586 cctggggatcaggtacataggagggtgctgtggatttgagccctaccacatcagggccat 89464527

                                                                            
Query: 1540     tgcagaggagctggccccagaaaggggatttttgcctccagcttcagagaaacatggcag 1599
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89464526 tgcagaggagctggccccagaaaggggatttttgcctccagcttcagagaaacatggcag 89464467

                                                                 
Query: 1600     ctggggaagtgctttggacatgcacaccaagccctgggttagagccagg 1648
                ||||||||||| | |  | |||||||||||||||||| |||||||||||
Sbjct: 89464466 ctggggaagtggtctcaatatgcacaccaagccctggattagagccagg 89464418



 Score =  373 bits (188), Expect = e-100
 Identities = 188/188 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1232     gcaggagcatccattgttggcgtgaattgccattttgaccccacaattagtttgcaaaca 1291
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89412858 gcaggagcatccattgttggcgtgaattgccattttgaccccacaattagtttgcaaaca 89412799

                                                                            
Query: 1292     gtgaagctcatgaaagaaggcttgcaggccgctggattgaaagcccacctgatgagtcag 1351
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89412798 gtgaagctcatgaaagaaggcttgcaggccgctggattgaaagcccacctgatgagtcag 89412739

                                                                            
Query: 1352     cccttggcctaccacactccggactgcggcaagcaggggttcatcgacctgccagaattc 1411
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89412738 cccttggcctaccacactccggactgcggcaagcaggggttcatcgacctgccagaattc 89412679

                        
Query: 1412     ccctttgg 1419
                ||||||||
Sbjct: 89412678 ccctttgg 89412671



 Score =  299 bits (151), Expect = 3e-78
 Identities = 151/151 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1086     agtattttgaacatgttgaagaggctgtgtgggcagttgaagccttgaaagcatctggga 1145
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89416744 agtattttgaacatgttgaagaggctgtgtgggcagttgaagccttgaaagcatctggga 89416685

                                                                            
Query: 1146     agcctgtggcagcgaccatgtgcatcggcccagagggagacctgcacggcgtgaccccag 1205
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89416684 agcctgtggcagcgaccatgtgcatcggcccagagggagacctgcacggcgtgaccccag 89416625

                                               
Query: 1206     gccagtgtgcagtgcgtctggtaaaggcagg 1236
                |||||||||||||||||||||||||||||||
Sbjct: 89416624 gccagtgtgcagtgcgtctggtaaaggcagg 89416594



 Score =  268 bits (135), Expect = 1e-68
 Identities = 135/135 (100%)
 Strand = Plus / Minus

                                                                            
Query: 642      agggcatcctggaacggttaaactctggagaggttgtgattggagacggagggtttgtct 701
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89426214 agggcatcctggaacggttaaactctggagaggttgtgattggagacggagggtttgtct 89426155

                                                                            
Query: 702      ttgctctggagaagaggggctatgtgaaagccgggccctggaccccagaagctgccgtgg 761
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89426154 ttgctctggagaagaggggctatgtgaaagccgggccctggaccccagaagctgccgtgg 89426095

                               
Query: 762      aacacccagaagcag 776
                |||||||||||||||
Sbjct: 89426094 aacacccagaagcag 89426080



 Score =  244 bits (123), Expect = 1e-61
 Identities = 123/123 (100%)
 Strand = Plus / Minus

                                                                            
Query: 774      cagttcgccagcttcatcgggagttcctcagagccggatcgaatgtcatgcagaccttca 833
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89419252 cagttcgccagcttcatcgggagttcctcagagccggatcgaatgtcatgcagaccttca 89419193

                                                                            
Query: 834      ccttctatgccagtgaggacaagctggagaacaggggaaactacgttgcagagaaaatat 893
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89419192 ccttctatgccagtgaggacaagctggagaacaggggaaactacgttgcagagaaaatat 89419133

                   
Query: 894      ccg 896
                |||
Sbjct: 89419132 ccg 89419130



 Score =  224 bits (113), Expect = 1e-55
 Identities = 129/133 (96%), Gaps = 1/133 (0%)
 Strand = Plus / Minus

                                                                            
Query: 1646     agggccaggaaggaatactgggagaatcttcggatagcctccggcaggccgtacaaccct 1705
                |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 89408033 agggccaggaaggaatactgggagaatcttcggatagcctccggcaggccatacaaccct 89407974

                                                                            
Query: 1706     tccatgtcaaagccggatgcctggggagtgaccaaagg-acagctgaactgatgcagcaa 1764
                |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| 
Sbjct: 89407973 tccatgtcaaagccggatgcctggggagtgaccaaaggcacagctgagctgatgcagcag 89407914

                             
Query: 1765     aaagaagctacta 1777
                |||||||||||||
Sbjct: 89407913 aaagaagctacta 89407901



 Score =  107 bits (54), Expect = 2e-20
 Identities = 102/118 (86%)
 Strand = Plus / Minus

                                                                            
Query: 1086     agtattttgaacatgttgaagaggctgtgtgggcagttgaagccttgaaagcatctggga 1145
                ||||||||||| ||| ||| || ||||||||||| || |||| ||| |||| |||||| |
Sbjct: 89466600 agtattttgaatatgctgaggaagctgtgtgggctgtggaagtcttaaaagaatctggaa 89466541

                                                                          
Query: 1146     agcctgtggcagcgaccatgtgcatcggcccagagggagacctgcacggcgtgacccc 1203
                | || |||||||| ||||||||||| ||||||||||||||| |||| |||||||||||
Sbjct: 89466540 aacccgtggcagccaccatgtgcataggcccagagggagacatgcatggcgtgacccc 89466483



 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                     
Query: 803      agagccggatcgaatgtcatgcagaccttcaccttctatgccagtgaggacaa 855
                ||||| |||||||||||||||||||| |||||||| | ||||| |||||||||
Sbjct: 89469866 agagcgggatcgaatgtcatgcagactttcaccttttctgccaatgaggacaa 89469814


>gb|JH118568.1| Sus scrofa unplaced genomic scaffold ChrUScaf1048
          Length = 105113

 Score = 1144 bits (577), Expect = 0.0
 Identities = 632/655 (96%), Gaps = 12/655 (1%)
 Strand = Plus / Plus

                                                                         
Query: 2     ttttgaacacatgcactaatgcagggtcagtatcagacttttctgtaaaggccatatttt 61
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23027 ttttgaacacatgcactaatgcagggtcagtatcagacttttctgtaaaggccatatttt 23086

                                                                         
Query: 62    gtttggatacataaccactggacgtataatcacagagg------------ctgaagttct 109
             ||| | || |||||||||||||||||||||||||||||            ||||||||||
Sbjct: 23087 gttcgaatccataaccactggacgtataatcacagaggtcacactttaggctgaagttct 23146

                                                                         
Query: 110   tccagggcatggcctcctcgttcaagaatcttgtatcctcggcctttgacaaatatttgg 169
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23147 tccagggcatggcctcctcgttcaagaatcttgtatcctcggcctttgacaaatatttgg 23206

                                                                         
Query: 170   gcattggatggcgtttttaggggcctggtctggcaacctaagtaatggtaacaggatccc 229
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23207 gcattggatggcgtttttaggggcctggtctggcaacctaagtaatggtaacaggatccc 23266

                                                                         
Query: 230   aggcaaggaggagtacatcaggatttctcctcgagaagaaaagagggggtgggcacaggt 289
             |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 23267 aggcaaggaggagtacatcaggatttctcctcgagaagaaaagaggaggtgggcacaggt 23326

                                                                         
Query: 290   agagctgaaacccgagcagatggcaacctacttgnnnnnnncttcttaacttacttctgg 349
             ||||||||||||||||||||||||||||||||||       |||||||||||||||||||
Sbjct: 23327 agagctgaaacccgagcagatggcaacctacttgtttttttcttcttaacttacttctgg 23386

                                                                         
Query: 350   acgagttcacctatttgcaagaataatctcgatcactccctcaggaggccgattccagag 409
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23387 acgagttcacctatttgcaagaataatctcgatcactccctcaggaggccgattccagag 23446

                                                                         
Query: 410   gagccaggataaaaggctggggggcgtgttccctgccggaggcccgcgttggaccgcggg 469
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23447 gagccaggataaaaggctggggggcgtgttccctgccggaggcccgcgttggaccgcggg 23506

                                                                         
Query: 470   gaggctggggaaacctaccgcgtgagagctgcaggtataaagagctccgctgccgccgct 529
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23507 gaggctggggaaacctaccgcgtgagagctgcaggtataaagagctccgctgccgccgct 23566

                                                                         
Query: 530   gggcagctgcaggcttcgaaagggaaacctcgtcggttccaatccaaatccgttttcgag 589
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23567 gggcagctgcaggcttcgaaagggaaacctcgtcggttccaatccaaatccgttttcgag 23626

                                                                    
Query: 590   taccatccggacacctcgaatatggctccggttggggacaaaaaggccaagaagg 644
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23627 taccatccggacacctcgaatatggctccggttggggacaaaaaggccaagaagg 23681



 Score =  450 bits (227), Expect = e-123
 Identities = 230/231 (99%)
 Strand = Plus / Plus

                                                                         
Query: 1418  ggactggagcccagagttgcaaccagatgggacattcaaaaatacgccagagaggcctac 1477
             |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 40256 ggactggagcccagagttgcaaccagatgggatattcaaaaatacgccagagaggcctac 40315

                                                                         
Query: 1478  aacctgggggtcaggtacataggcgggtgctgtggatttgagccctaccacatcagggcc 1537
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40316 aacctgggggtcaggtacataggcgggtgctgtggatttgagccctaccacatcagggcc 40375

                                                                         
Query: 1538  attgcagaggagctggccccagaaaggggatttttgcctccagcttcagagaaacatggc 1597
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40376 attgcagaggagctggccccagaaaggggatttttgcctccagcttcagagaaacatggc 40435

                                                                
Query: 1598  agctggggaagtgctttggacatgcacaccaagccctgggttagagccagg 1648
             |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40436 agctggggaagtgctttggacatgcacaccaagccctgggttagagccagg 40486



 Score =  381 bits (192), Expect = e-103
 Identities = 192/192 (100%)
 Strand = Plus / Plus

                                                                         
Query: 896   gggcagaaagtcaatgaagctgcttgtgacattgcccggcaagtggctgatgagggagat 955
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33686 gggcagaaagtcaatgaagctgcttgtgacattgcccggcaagtggctgatgagggagat 33745

                                                                         
Query: 956   gctttggtggcaggaggtgtgagccagacaccttcgtacctcagctgcaagagcgaaacg 1015
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33746 gctttggtggcaggaggtgtgagccagacaccttcgtacctcagctgcaagagcgaaacg 33805

                                                                         
Query: 1016  gaagtcaaaaaagtgtttcggcagcagttagaggtctttatgaagaagaacgttgacttc 1075
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33806 gaagtcaaaaaagtgtttcggcagcagttagaggtctttatgaagaagaacgttgacttc 33865

                         
Query: 1076  ttgattgcagag 1087
             ||||||||||||
Sbjct: 33866 ttgattgcagag 33877



 Score =  373 bits (188), Expect = e-100
 Identities = 188/188 (100%)
 Strand = Plus / Plus

                                                                         
Query: 1232  gcaggagcatccattgttggcgtgaattgccattttgaccccacaattagtttgcaaaca 1291
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38490 gcaggagcatccattgttggcgtgaattgccattttgaccccacaattagtttgcaaaca 38549

                                                                         
Query: 1292  gtgaagctcatgaaagaaggcttgcaggccgctggattgaaagcccacctgatgagtcag 1351
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38550 gtgaagctcatgaaagaaggcttgcaggccgctggattgaaagcccacctgatgagtcag 38609

                                                                         
Query: 1352  cccttggcctaccacactccggactgcggcaagcaggggttcatcgacctgccagaattc 1411
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38610 cccttggcctaccacactccggactgcggcaagcaggggttcatcgacctgccagaattc 38669

                     
Query: 1412  ccctttgg 1419
             ||||||||
Sbjct: 38670 ccctttgg 38677



 Score =  299 bits (151), Expect = 3e-78
 Identities = 151/151 (100%)
 Strand = Plus / Plus

                                                                         
Query: 1086  agtattttgaacatgttgaagaggctgtgtgggcagttgaagccttgaaagcatctggga 1145
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34747 agtattttgaacatgttgaagaggctgtgtgggcagttgaagccttgaaagcatctggga 34806

                                                                         
Query: 1146  agcctgtggcagcgaccatgtgcatcggcccagagggagacctgcacggcgtgaccccag 1205
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34807 agcctgtggcagcgaccatgtgcatcggcccagagggagacctgcacggcgtgaccccag 34866

                                            
Query: 1206  gccagtgtgcagtgcgtctggtaaaggcagg 1236
             |||||||||||||||||||||||||||||||
Sbjct: 34867 gccagtgtgcagtgcgtctggtaaaggcagg 34897



 Score =  268 bits (135), Expect = 1e-68
 Identities = 135/135 (100%)
 Strand = Plus / Plus

                                                                         
Query: 642   agggcatcctggaacggttaaactctggagaggttgtgattggagacggagggtttgtct 701
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28194 agggcatcctggaacggttaaactctggagaggttgtgattggagacggagggtttgtct 28253

                                                                         
Query: 702   ttgctctggagaagaggggctatgtgaaagccgggccctggaccccagaagctgccgtgg 761
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28254 ttgctctggagaagaggggctatgtgaaagccgggccctggaccccagaagctgccgtgg 28313

                            
Query: 762   aacacccagaagcag 776
             |||||||||||||||
Sbjct: 28314 aacacccagaagcag 28328



 Score =  244 bits (123), Expect = 1e-61
 Identities = 123/123 (100%)
 Strand = Plus / Plus

                                                                         
Query: 774   cagttcgccagcttcatcgggagttcctcagagccggatcgaatgtcatgcagaccttca 833
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32316 cagttcgccagcttcatcgggagttcctcagagccggatcgaatgtcatgcagaccttca 32375

                                                                         
Query: 834   ccttctatgccagtgaggacaagctggagaacaggggaaactacgttgcagagaaaatat 893
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32376 ccttctatgccagtgaggacaagctggagaacaggggaaactacgttgcagagaaaatat 32435

                
Query: 894   ccg 896
             |||
Sbjct: 32436 ccg 32438



 Score =  224 bits (113), Expect = 1e-55
 Identities = 129/133 (96%), Gaps = 1/133 (0%)
 Strand = Plus / Plus

                                                                         
Query: 1646  agggccaggaaggaatactgggagaatcttcggatagcctccggcaggccgtacaaccct 1705
             |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 43053 agggccaggaaggaatactgggagaatcttcggatagcctccggcaggccatacaaccct 43112

                                                                         
Query: 1706  tccatgtcaaagccggatgcctggggagtgaccaaagg-acagctgaactgatgcagcaa 1764
             |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| 
Sbjct: 43113 tccatgtcaaagccggatgcctggggagtgaccaaaggcacagctgagctgatgcagcag 43172

                          
Query: 1765  aaagaagctacta 1777
             |||||||||||||
Sbjct: 43173 aaagaagctacta 43185


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 50,876,624
Number of extensions: 257
Number of successful extensions: 257
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 21
Length of query: 1777
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1755
Effective length of database: 2,808,408,574
Effective search space: 4928757047370
Effective search space used: 4928757047370
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)