Animal-Genome cDNA 20110601C-007604


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007604
         (2204 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001039811.1| WD repeat-containing protein 1 [Bos taurus].     1226   0.0  
Alignment   gi|NP_001098945.1| WD repeat-containing protein 5 [Bos taurus].       92   1e-18
Alignment   gi|XP_001788325.2| PREDICTED: WD repeat domain 5 [Bos taurus].        91   3e-18
Alignment   gi|NP_001014887.1| notchless protein homolog 1 [Bos taurus].          90   9e-18
Alignment   gi|NP_001092501.1| WD repeat-containing protein 51B [Bos taurus].     84   7e-16
Alignment   gi|XP_001251626.3| PREDICTED: WD repeat domain 51B-like, partia...    84   7e-16
Alignment   gi|NP_001033186.1| WD repeat-containing protein 61 [Bos taurus].      81   3e-15
Alignment   gi|NP_001157418.1| WD repeat-containing protein 38 [Bos taurus].      79   2e-14
Alignment   gi|NP_001178436.1| apoptotic peptidase activating factor 1 [Bos...    76   1e-13
Alignment   gi|NP_001033649.1| POC1 centriolar protein homolog A [Bos tauru...    76   1e-13

>ref|NP_001039811.1| WD repeat-containing protein 1 [Bos taurus].
          Length = 606

 Score = 1226 bits (3172), Expect = 0.0
 Identities = 588/606 (97%), Positives = 602/606 (99%)
 Frame = +3

Query: 189  MPYEIKKVFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVILRNIDNPAVADIYTEHAHQ 368
            MPYEIKKVFASLPQVERGVSKI+GGDPKGN+FLYTNGKCVILRNIDNPA+ADIYTEHAHQ
Sbjct: 1    MPYEIKKVFASLPQVERGVSKIVGGDPKGNSFLYTNGKCVILRNIDNPAIADIYTEHAHQ 60

Query: 369  VVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV 548
            VVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV
Sbjct: 61   VVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV 120

Query: 549  GEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFK 728
            GEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRL TGSDDNCAAFFEGPPFK
Sbjct: 121  GEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLVTGSDDNCAAFFEGPPFK 180

Query: 729  FKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAI 908
            FKFTI DH RFVNCVRFSPDGNRFATASADGQI+IYDGKTGEKVC+LGGSKAHDGGIYAI
Sbjct: 181  FKFTISDHGRFVNCVRFSPDGNRFATASADGQIFIYDGKTGEKVCALGGSKAHDGGIYAI 240

Query: 909  SWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLSGY 1088
            SWSPDSTHLLSASGDKTSK+WDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLSGY
Sbjct: 241  SWSPDSTHLLSASGDKTSKIWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLSGY 300

Query: 1089 INYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFA 1268
            INYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFA
Sbjct: 301  INYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFA 360

Query: 1269 GKGHTNQVSRMTVDESGQLVSCSMDDTVRYTSLSLRDYSGQGVVKLEVQPKCVAVGPGGY 1448
            GKGHTNQVSRMTVDE GQLVSCSMDDTVRYT+L+LRDYSGQGVVKL+VQPKC+AVGPGGY
Sbjct: 361  GKGHTNQVSRMTVDEHGQLVSCSMDDTVRYTNLTLRDYSGQGVVKLDVQPKCLAVGPGGY 420

Query: 1449 TVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGSTLK 1628
            TVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILG+TLK
Sbjct: 421  TVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGTTLK 480

Query: 1629 DEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAW 1808
            DEGKLLEAKGPVTD+A+SHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAW
Sbjct: 481  DEGKLLEAKGPVTDLAFSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAW 540

Query: 1809 SPDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVK 1988
            SPDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVK
Sbjct: 541  SPDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVK 600

Query: 1989 EWTISY 2006
            EWTI+Y
Sbjct: 601  EWTIAY 606


>ref|NP_001098945.1| WD repeat-containing protein 5 [Bos taurus].
          Length = 334

 Score = 92.4 bits (228), Expect = 1e-18
 Identities = 75/234 (32%), Positives = 116/234 (49%), Gaps = 10/234 (4%)
 Frame = +3

Query: 717  PPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYI---YDGKTGEKVCSLGGSKAH 887
            P +  KFT+  H++ V+ V+FSP+G   A++SAD  I I   YDGK  EK  S      H
Sbjct: 33   PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTIS-----GH 86

Query: 888  DGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLW--QKDH 1061
              GI  ++WS DS  L+SAS DKT K+WDV+    + T    SN +     C +  Q + 
Sbjct: 87   KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV---FCCNFNPQSNL 143

Query: 1062 LLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDS 1241
            ++S S    +   D     K L+ +  HS  +    VH N   S I S S+DG    WD+
Sbjct: 144  IVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVS--AVHFNRDGSLIVSSSYDGLCRIWDT 200

Query: 1242 ETGENDSFAGKGHTNQVSRMTVDESGQ-LVSCSMDDTVRYTSLS----LRDYSG 1388
             +G+            VS +    +G+ +++ ++D+T++    S    L+ Y+G
Sbjct: 201  ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 254



 Score = 73.2 bits (178), Expect = 9e-13
 Identities = 73/316 (23%), Positives = 128/316 (40%), Gaps = 4/316 (1%)
 Frame = +3

Query: 357  HAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGK--IKDIAWTEDS 530
            H   V   K++P+G ++AS      ++IW         K+E      K  I D+AW+ DS
Sbjct: 44   HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDS 99

Query: 531  KRIAVVGEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFF 710
                                           N ++++ D K  + + +++G         
Sbjct: 100  -------------------------------NLLVSASDDKTLKIWDVSSG--------- 119

Query: 711  EGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHD 890
                 K   T+  HS +V C  F+P  N   + S D  + I+D KTG+ + +L    AH 
Sbjct: 120  -----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL---PAHS 171

Query: 891  GGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLS 1070
              + A+ ++ D + ++S+S D   ++WD      + T     N     +       ++L+
Sbjct: 172  DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 231

Query: 1071 ISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVH--KNGGKSYIYSGSHDGHINYWDSE 1244
             +L   +   D +   K L+   GH     C+  +    GGK +I SGS D  +  W+ +
Sbjct: 232  ATLDNTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQ 289

Query: 1245 TGENDSFAGKGHTNQV 1292
            T E      +GHT+ V
Sbjct: 290  TKEIVQKL-QGHTDVV 304



 Score = 67.4 bits (163), Expect = 5e-11
 Identities = 63/262 (24%), Positives = 113/262 (43%), Gaps = 6/262 (2%)
 Frame = +3

Query: 612  ITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDG 791
            + GH K ++SV    +  + LA+ S D     +     KF+ TI  H   ++ V +S D 
Sbjct: 41   LAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99

Query: 792  NRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVW 971
            N   +AS D  + I+D  +G+ + +L   K H   ++  +++P S  ++S S D++ ++W
Sbjct: 100  NLLVSASDDKTLKIWDVSSGKCLKTL---KGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156

Query: 972  DVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLS--GYINYLDKNNPSKPLRVIKGH 1145
            DV     + T    S   D      + +D  L +S S  G     D  +      +I   
Sbjct: 157  DVKTGKCLKTLPAHS---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 213

Query: 1146 SKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFAGKGHTNQ----VSRMTVDE 1313
            +  +  +    NG   YI + + D  +  WD   G+       GH N+     +  +V  
Sbjct: 214  NPPVSFVKFSPNG--KYILAATLDNTLKLWDYSKGKCLK-TYTGHKNEKYCIFANFSVTG 270

Query: 1314 SGQLVSCSMDDTVRYTSLSLRD 1379
               +VS S D+ V   +L  ++
Sbjct: 271  GKWIVSGSEDNLVYIWNLQTKE 292



 Score = 50.8 bits (120), Expect = 5e-06
 Identities = 73/316 (23%), Positives = 126/316 (39%), Gaps = 19/316 (6%)
 Frame = +3

Query: 1104 KNNPSKPLRVIK----GHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFAG 1271
            K  P KP   +K    GH+K++  +    NG   ++ S S D  I  W +  G+ +    
Sbjct: 27   KPTPVKPNYALKFTLAGHTKAVSSVKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTIS 84

Query: 1272 KGHTNQVSRMT-VDESGQLVSCSMDDTVRYTSLS----LRDYSGQG--VVKLEVQPKCVA 1430
             GH   +S +    +S  LVS S D T++   +S    L+   G    V      P+   
Sbjct: 85   -GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 143

Query: 1431 VGPGGYTVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVH--PGGETVAVGGADGNVRLY 1604
            +  G +   V I  +       KC     P +   V AVH    G  +     DG  R++
Sbjct: 144  IVSGSFDESVRIWDV----KTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198

Query: 1605 SIL-GSTLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGH 1781
                G  LK    + +   PV+ V +S +G ++        + ++  + G      + GH
Sbjct: 199  DTASGQCLKT--LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGH 255

Query: 1782 HAKIVCLAWS---PDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEH 1952
              +  C+  +      +   SG  D +VY+W L   E   K+Q  H    +S+     E+
Sbjct: 256  KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISTACHPTEN 314

Query: 1953 TLVTTS--HDASVKEW 1994
             + + +  +D ++K W
Sbjct: 315  IIASAALENDKTIKLW 330


>ref|XP_001788325.2| PREDICTED: WD repeat domain 5 [Bos taurus].
          Length = 330

 Score = 91.3 bits (225), Expect = 3e-18
 Identities = 74/235 (31%), Positives = 115/235 (48%), Gaps = 9/235 (3%)
 Frame = +3

Query: 711  EGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYI---YDGKTGEKVCSLGGSK 881
            E P +  KFT+  H+  V+ V+FSP+G   A++SAD  I I   YDGK  + +      K
Sbjct: 27   EKPNYALKFTLEGHTEAVSSVKFSPNGEWLASSSADKVIIIWGAYDGKYEKTL------K 80

Query: 882  AHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDH 1061
             H+  I  ++WS DS+ L+SAS DKT K+WDV     + T    SN +     C +    
Sbjct: 81   GHNLEISDVAWSSDSSRLVSASDDKTLKIWDVRSGKCLKTLKGHSNYV---FCCNFNPPS 137

Query: 1062 LLSISLSGYINY-LDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWD 1238
             L IS S   +  + +    K L+ +  HS  +    VH N   S I SGS+DG    WD
Sbjct: 138  NLIISGSFDESVKIWEVKTGKCLKTLSAHSDPVS--AVHFNCSGSLIVSGSYDGVCRIWD 195

Query: 1239 SETGENDSFAGKGHTNQVSRMTVDESGQ-LVSCSMDDTVRYTSLS----LRDYSG 1388
            + +G+            VS +    +G+ ++  ++D+T++    S    L+ Y+G
Sbjct: 196  AASGQCLKALVDDDNPPVSFVKFSPNGKYILIATLDNTLKLWDYSRGRCLKTYTG 250



 Score = 72.8 bits (177), Expect = 1e-12
 Identities = 57/230 (24%), Positives = 100/230 (43%), Gaps = 9/230 (3%)
 Frame = +3

Query: 357  HAHQVVVAKYAPSGFYIASGDVSGKLRIW-------DTTQKEHLLKYEYQPFAGKIKDIA 515
            H   V   K++P+G ++AS      + IW       + T K H L         +I D+A
Sbjct: 40   HTEAVSSVKFSPNGEWLASSSADKVIIIWGAYDGKYEKTLKGHNL---------EISDVA 90

Query: 516  WTEDSKRIAVVGEGREKFGAVFLWD--SGSSVGEITGHNKVINSVDIKQSRPYRLATGSD 689
            W+ DS R+    + +     + +WD  SG  +  + GH+  +   +        + +GS 
Sbjct: 91   WSSDSSRLVSASDDK----TLKIWDVRSGKCLKTLKGHSNYVFCCNFNPPSNL-IISGSF 145

Query: 690  DNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSL 869
            D     +E    K   T+  HS  V+ V F+  G+   + S DG   I+D  +G+  C  
Sbjct: 146  DESVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGVCRIWDAASGQ--CLK 203

Query: 870  GGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSN 1019
                  +  +  + +SP+  ++L A+ D T K+WD +    + T+T   N
Sbjct: 204  ALVDDDNPPVSFVKFSPNGKYILIATLDNTLKLWDYSRGRCLKTYTGHKN 253



 Score = 67.0 bits (162), Expect = 7e-11
 Identities = 60/243 (24%), Positives = 104/243 (42%), Gaps = 4/243 (1%)
 Frame = +3

Query: 576  VFLWDS--GSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGD 749
            + +W +  G     + GHN  I+ V    S   RL + SDD     ++    K   T+  
Sbjct: 65   IIIWGAYDGKYEKTLKGHNLEISDV-AWSSDSSRLVSASDDKTLKIWDVRSGKCLKTLKG 123

Query: 750  HSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDST 929
            HS +V C  F+P  N   + S D  + I++ KTG+ + +L    AH   + A+ ++   +
Sbjct: 124  HSNYVFCCNFNPPSNLIISGSFDESVKIWEVKTGKCLKTL---SAHSDPVSAVHFNCSGS 180

Query: 930  HLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLSGYINYLDKN 1109
             ++S S D   ++WD      +       N     +       ++L  +L   +   D +
Sbjct: 181  LIVSGSYDGVCRIWDAASGQCLKALVDDDNPPVSFVKFSPNGKYILIATLDNTLKLWDYS 240

Query: 1110 NPSKPLRVIKGHSKSIQCL--TVHKNGGKSYIYSGSHDGHINYWDSETGENDSFAGKGHT 1283
               + L+   GH     C+  +    GGK +I SGS D  +  W+ +T E      +GHT
Sbjct: 241  R-GRCLKTYTGHKNEKYCVFASFSVTGGK-WIVSGSEDNLVYIWNLQTKEIVQKL-QGHT 297

Query: 1284 NQV 1292
            + V
Sbjct: 298  DVV 300



 Score = 57.4 bits (137), Expect = 5e-08
 Identities = 76/323 (23%), Positives = 135/323 (41%), Gaps = 24/323 (7%)
 Frame = +3

Query: 1110 NPSKPLR---------VIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDS 1262
            N SKP+           ++GH++++  +    NG   ++ S S D  I  W +  G+ + 
Sbjct: 20   NQSKPVSEKPNYALKFTLEGHTEAVSSVKFSPNG--EWLASSSADKVIIIWGAYDGKYEK 77

Query: 1263 FAGKGHTNQVSRMT-VDESGQLVSCSMDDTVRYTSLS----LRDYSGQG--VVKLEVQPK 1421
               KGH  ++S +    +S +LVS S D T++   +     L+   G    V      P 
Sbjct: 78   TL-KGHNLEISDVAWSSDSSRLVSASDDKTLKIWDVRSGKCLKTLKGHSNYVFCCNFNPP 136

Query: 1422 CVAVGPGGYTVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVH--PGGETVAVGGADGNV 1595
               +  G +   V I ++       KC    +   +P V AVH    G  +  G  DG  
Sbjct: 137  SNLIISGSFDESVKIWEV----KTGKCLKTLSAHSDP-VSAVHFNCSGSLIVSGSYDGVC 191

Query: 1596 RLYSIL-GSTLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVF 1772
            R++    G  LK    + +   PV+ V +S +G ++ +      + ++  + G      +
Sbjct: 192  RIWDAASGQCLK--ALVDDDNPPVSFVKFSPNGKYILIATLDNTLKLWDYSRGRCLKT-Y 248

Query: 1773 YGHHAKIVCLAWS---PDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWL 1943
             GH  +  C+  S      +   SG  D +VY+W L   E   K+Q  H    +S+    
Sbjct: 249  TGHKNEKYCVFASFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISAACHP 307

Query: 1944 DEHTLVTTS--HDASVKEWTISY 2006
             E+ + + +  +D +VK WT +Y
Sbjct: 308  TENIIASAALGNDKTVKLWTSTY 330


>ref|NP_001014887.1| notchless protein homolog 1 [Bos taurus].
          Length = 486

 Score = 89.7 bits (221), Expect = 9e-18
 Identities = 98/432 (22%), Positives = 163/432 (37%), Gaps = 14/432 (3%)
 Frame = +3

Query: 612  ITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDG 791
            + GH++ + SV    +  Y LA+GS D    F++       FT   H  +V  + +SPDG
Sbjct: 111  LEGHSEAVISVAFSPTGKY-LASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 169

Query: 792  NRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISW-----SPDSTHLLSASGDK 956
             + A+   +GQI ++D  TG++V        H   I A+SW     +P+  ++ S+S D 
Sbjct: 170  KKLASGCKNGQILLWDPSTGKQVGR--ALTGHSKWITALSWEPLHANPECRYVASSSKDG 227

Query: 957  TSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLSGYINYLDKNNPSKPLRVI 1136
            + +VWD        T T                                           
Sbjct: 228  SVRVWDTTAGRCERTLT------------------------------------------- 244

Query: 1137 KGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGE-NDSFAGKGH--------TNQ 1289
             GH++S+ CL   + GG   +YS S D  I  W +  G    +  G GH        T+ 
Sbjct: 245  -GHAQSVTCL---RWGGDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDY 300

Query: 1290 VSRMTVDESGQLVSCSMDDTVRYTSLSLRDYSGQGVVKLEVQPKCVAVGPGGYTVVVCIG 1469
              R    E  +    + D       L  R  S   +V+ +  P+ +  G   +T+ +   
Sbjct: 301  ALRTGAFEPAEASVNAQDLRGSLQELKERALSRYNLVRGQ-GPERLVSGSDDFTLFLWSP 359

Query: 1470 QIVLLKDQRKCFSIDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGSTLKDEGKLLE 1649
                 +D++    +         V   P    +A    D +++L+   G T K    L  
Sbjct: 360  ----AEDKKPLARMTGHQALINQVVFSPDSRVIASASFDKSIKLWD--GRTGKYLASLRG 413

Query: 1650 AKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHF 1829
                V  +A+S D   L    +   + V+ V      +    GH  ++  + WSPD +  
Sbjct: 414  HVAAVYQIAWSADSRLLVSGSSDSTLKVWDV-KAQKLSTDLPGHADEVYAVDWSPDGQRV 472

Query: 1830 ASGGMDMMVYVW 1865
            ASGG D  + +W
Sbjct: 473  ASGGKDKCLRIW 484



 Score = 70.5 bits (171), Expect = 6e-12
 Identities = 101/429 (23%), Positives = 172/429 (40%), Gaps = 13/429 (3%)
 Frame = +3

Query: 357  HAHQVVVAKYAPSGFYIASGDVSGKLRIWD-TTQKEHLLKYEYQPFAGKIKDIAWTEDSK 533
            H+  V+   ++P+G Y+ASG     +R WD +T+  H   +  Q     +  I+W+ D K
Sbjct: 114  HSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPH---FTCQGHRHWVLSISWSPDGK 170

Query: 534  RIAVVGEGREKFGAVFLWD--SGSSVGE-ITGHNKVINSVDIK--QSRP--YRLATGSDD 692
            ++A       K G + LWD  +G  VG  +TGH+K I ++  +   + P    +A+ S D
Sbjct: 171  KLA----SGCKNGQILLWDPSTGKQVGRALTGHSKWITALSWEPLHANPECRYVASSSKD 226

Query: 693  NCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLG 872
                 ++    + + T+  H++ V C+R+  DG  + +AS D  I ++    G    +L 
Sbjct: 227  GSVRVWDTTAGRCERTLTGHAQSVTCLRWGGDGLLY-SASQDRTIKVWRAHDGVLCRTLQ 285

Query: 873  GSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTF-TMGSNVLDQQLGCLW 1049
            G   H   +  ++ S D  + L     + ++   VN   +  +   +    L +      
Sbjct: 286  G---HGHWVNTMALSTD--YALRTGAFEPAEA-SVNAQDLRGSLQELKERALSRYNLVRG 339

Query: 1050 QKDHLLSISLSGYINYL-DKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHI 1226
            Q    L      +  +L       KPL  + GH   I  +    +     I S S D  I
Sbjct: 340  QGPERLVSGSDDFTLFLWSPAEDKKPLARMTGHQALINQVVFSPD--SRVIASASFDKSI 397

Query: 1227 NYWDSETGENDSFAGKGHTNQVSRMTVD-ESGQLVSCSMDDTVRYTSLSLRDYSGQGVVK 1403
              WD  TG+  + + +GH   V ++    +S  LVS S D T++   +  +         
Sbjct: 398  KLWDGRTGKYLA-SLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQK-------- 448

Query: 1404 LEVQPKCVAVGPGGYTVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAV--HPGGETVAVG 1577
                                              S D PG+  EV AV   P G+ VA G
Sbjct: 449  ---------------------------------LSTDLPGHADEVYAVDWSPDGQRVASG 475

Query: 1578 GADGNVRLY 1604
            G D  +R++
Sbjct: 476  GKDKCLRIW 484


>ref|NP_001092501.1| WD repeat-containing protein 51B [Bos taurus].
          Length = 478

 Score = 83.6 bits (205), Expect = 7e-16
 Identities = 69/315 (21%), Positives = 131/315 (41%), Gaps = 5/315 (1%)
 Frame = +3

Query: 324  DNPAVADIYTEHAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKI 503
            ++P +   +  H   +    ++P+G  +A+G     L +W    +    +Y         
Sbjct: 6    EDPVLERYFKGHKAAITSVDFSPNGKQLATGSWDTFLMLWSLRPQARAFRYVGH------ 59

Query: 504  KDIAWTEDSKRIAVVGEGREKFGAVFLW--DSGSSVGEITGHNKVINSVDIKQSRPYRLA 677
            KD+  +     +  +     +   + LW  D      E   H   + SVD      + LA
Sbjct: 60   KDVITSVQFSPLGNLLASASRDRTIRLWIPDKRGKSSEFKAHTAPVRSVDFSADGQF-LA 118

Query: 678  TGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEK 857
            + S+D     +     +F +++  H+ +V C +FSPDG    + S D  I I+D  T  K
Sbjct: 119  SASEDKSIKVWNMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWD--TTNK 176

Query: 858  VCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQL 1037
             C +       G    ++++P+ T + SA  D T K+WD+ VN ++  + + S      +
Sbjct: 177  QC-VNNFSDFVGFANFVAFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVHSG----GV 231

Query: 1038 GCLW---QKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSG 1208
             C+      ++L++ S  G +  LD     + +  ++GH+  +   TV  + G     SG
Sbjct: 232  NCVSFHPSGNYLITASSDGTLKILDLLE-GRLIYTLQGHTGPV--FTVSFSKGGELFTSG 288

Query: 1209 SHDGHINYWDSETGE 1253
              D  +  W +   E
Sbjct: 289  GADAQVLLWRTNFDE 303



 Score = 65.1 bits (157), Expect = 2e-10
 Identities = 55/212 (25%), Positives = 80/212 (37%)
 Frame = +3

Query: 357 HAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKR 536
           H H V  AK++P G  I S      ++IWDTT K+ +    +  F G    +A+  +   
Sbjct: 143 HTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCV--NNFSDFVGFANFVAFNPNGTC 200

Query: 537 IAVVGEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEG 716
           IA  G        V +WD    V ++  H +V                            
Sbjct: 201 IASAGSDH----TVKIWDI--RVNKLLQHYQV---------------------------- 226

Query: 717 PPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGG 896
                      HS  VNCV F P GN   TAS+DG + I D   G  + +L G   H G 
Sbjct: 227 -----------HSGGVNCVSFHPSGNYLITASSDGTLKILDLLEGRLIYTLQG---HTGP 272

Query: 897 IYAISWSPDSTHLLSASGDKTSKVWDVNVNSV 992
           ++ +S+S       S   D    +W  N + +
Sbjct: 273 VFTVSFSKGGELFTSGGADAQVLLWRTNFDEL 304



 Score = 55.5 bits (132), Expect = 2e-07
 Identities = 62/271 (22%), Positives = 113/271 (41%), Gaps = 10/271 (3%)
 Frame = +3

Query: 1203 SGSHDGHINYW-DSETGENDSFAGKGHTNQVSRMTVDESGQ-LVSCSMDDTVRYTSLSLR 1376
            S S D  I  W   + G++  F  K HT  V  +     GQ L S S D +++  ++  +
Sbjct: 77   SASRDRTIRLWIPDKRGKSSEF--KAHTAPVRSVDFSADGQFLASASEDKSIKVWNMYRQ 134

Query: 1377 DYSGQGVVKLEVQPKCVAVGPGGYTVVVCI-GQIVLLKD--QRKCFS--IDNPGYEPEVV 1541
             +    + +     +C    P G  +V C   + + + D   ++C +   D  G+    V
Sbjct: 135  RFL-YSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDFVGFA-NFV 192

Query: 1542 AVHPGGETVAVGGADGNVRLYSILGSTLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASK 1721
            A +P G  +A  G+D  V+++ I  + L    ++    G V  V++   G +L    +  
Sbjct: 193  AFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQV--HSGGVNCVSFHPSGNYLITASSDG 250

Query: 1722 VVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHFASGGMDMMVYVWTLSDPETR---V 1892
             + +  + +G     +  GH   +  +++S   E F SGG D  V +W  +  E     V
Sbjct: 251  TLKILDLLEGRLIYTL-QGHTGPVFTVSFSKGGELFTSGGADAQVLLWRTNFDELNYKDV 309

Query: 1893 KIQDAHRLHHVSSLAWLDEHTLVTTSHDASV 1985
              ++  RLH  S    LD +      H+  +
Sbjct: 310  SKRNLKRLHFDSPPHLLDIYPRTPHPHEGRI 340


>ref|XP_001251626.3| PREDICTED: WD repeat domain 51B-like, partial [Bos taurus].
          Length = 371

 Score = 83.6 bits (205), Expect = 7e-16
 Identities = 69/315 (21%), Positives = 131/315 (41%), Gaps = 5/315 (1%)
 Frame = +3

Query: 324  DNPAVADIYTEHAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKI 503
            ++P +   +  H   +    ++P+G  +A+G     L +W    +    +Y         
Sbjct: 6    EDPVLERYFKGHKAAITSVDFSPNGKQLATGSWDTFLMLWSLRPQARAFRYVGH------ 59

Query: 504  KDIAWTEDSKRIAVVGEGREKFGAVFLW--DSGSSVGEITGHNKVINSVDIKQSRPYRLA 677
            KD+  +     +  +     +   + LW  D      E   H   + SVD      + LA
Sbjct: 60   KDVITSVQFSPLGNLLASASRDRTIRLWIPDKRGKSSEFKAHTAPVRSVDFSADGQF-LA 118

Query: 678  TGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEK 857
            + S+D     +     +F +++  H+ +V C +FSPDG    + S D  I I+D  T  K
Sbjct: 119  SASEDKSIKVWNMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWD--TTNK 176

Query: 858  VCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQL 1037
             C +       G    ++++P+ T + SA  D T K+WD+ VN ++  + + S      +
Sbjct: 177  QC-VNNFSDFVGFANFVAFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVHSG----GV 231

Query: 1038 GCLW---QKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSG 1208
             C+      ++L++ S  G +  LD     + +  ++GH+  +   TV  + G     SG
Sbjct: 232  NCVSFHPSGNYLITASSDGTLKILDLLE-GRLIYTLQGHTGPV--FTVSFSKGGELFTSG 288

Query: 1209 SHDGHINYWDSETGE 1253
              D  +  W +   E
Sbjct: 289  GADAQVLLWRTNFDE 303



 Score = 65.1 bits (157), Expect = 2e-10
 Identities = 55/212 (25%), Positives = 80/212 (37%)
 Frame = +3

Query: 357 HAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKR 536
           H H V  AK++P G  I S      ++IWDTT K+ +    +  F G    +A+  +   
Sbjct: 143 HTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCV--NNFSDFVGFANFVAFNPNGTC 200

Query: 537 IAVVGEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEG 716
           IA  G        V +WD    V ++  H +V                            
Sbjct: 201 IASAGSDH----TVKIWDI--RVNKLLQHYQV---------------------------- 226

Query: 717 PPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGG 896
                      HS  VNCV F P GN   TAS+DG + I D   G  + +L G   H G 
Sbjct: 227 -----------HSGGVNCVSFHPSGNYLITASSDGTLKILDLLEGRLIYTLQG---HTGP 272

Query: 897 IYAISWSPDSTHLLSASGDKTSKVWDVNVNSV 992
           ++ +S+S       S   D    +W  N + +
Sbjct: 273 VFTVSFSKGGELFTSGGADAQVLLWRTNFDEL 304



 Score = 55.5 bits (132), Expect = 2e-07
 Identities = 62/271 (22%), Positives = 113/271 (41%), Gaps = 10/271 (3%)
 Frame = +3

Query: 1203 SGSHDGHINYW-DSETGENDSFAGKGHTNQVSRMTVDESGQ-LVSCSMDDTVRYTSLSLR 1376
            S S D  I  W   + G++  F  K HT  V  +     GQ L S S D +++  ++  +
Sbjct: 77   SASRDRTIRLWIPDKRGKSSEF--KAHTAPVRSVDFSADGQFLASASEDKSIKVWNMYRQ 134

Query: 1377 DYSGQGVVKLEVQPKCVAVGPGGYTVVVCI-GQIVLLKD--QRKCFS--IDNPGYEPEVV 1541
             +    + +     +C    P G  +V C   + + + D   ++C +   D  G+    V
Sbjct: 135  RFL-YSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDFVGFA-NFV 192

Query: 1542 AVHPGGETVAVGGADGNVRLYSILGSTLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASK 1721
            A +P G  +A  G+D  V+++ I  + L    ++    G V  V++   G +L    +  
Sbjct: 193  AFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQV--HSGGVNCVSFHPSGNYLITASSDG 250

Query: 1722 VVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHFASGGMDMMVYVWTLSDPETR---V 1892
             + +  + +G     +  GH   +  +++S   E F SGG D  V +W  +  E     V
Sbjct: 251  TLKILDLLEGRLIYTL-QGHTGPVFTVSFSKGGELFTSGGADAQVLLWRTNFDELNYKDV 309

Query: 1893 KIQDAHRLHHVSSLAWLDEHTLVTTSHDASV 1985
              ++  RLH  S    LD +      H+  +
Sbjct: 310  SKRNLKRLHFDSPPHLLDIYPRTPHPHEGRI 340


>ref|NP_001033186.1| WD repeat-containing protein 61 [Bos taurus].
          Length = 305

 Score = 81.3 bits (199), Expect = 3e-15
 Identities = 59/199 (29%), Positives = 92/199 (46%)
 Frame = +3

Query: 408  ASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKFGAVFLW 587
            AS  +   +R+WD    + +   +  P       +A++ DS+ +A  G    K   +F  
Sbjct: 80   ASSSLDAHIRLWDLENGKQIKSIDAGPVDAWT--LAFSPDSQYLAT-GTHVGKVN-IFGV 135

Query: 588  DSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVN 767
            +SG     +    K I S+       Y LA+G+ D     F+    K   T+  H+  + 
Sbjct: 136  ESGKKEYSLDTRGKFILSIAYSPDGKY-LASGAIDGIINIFDIATGKLLHTLEGHAMPIR 194

Query: 768  CVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDSTHLLSAS 947
             + FSPD     TAS DG I IYD +      +L G   H   +  +++ PD TH +S+S
Sbjct: 195  SLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG---HASWVLNVAFCPDDTHFVSSS 251

Query: 948  GDKTSKVWDVNVNSVVNTF 1004
             DK+ KVWDV   + V+TF
Sbjct: 252  SDKSVKVWDVGTRTCVHTF 270



 Score = 56.6 bits (135), Expect = 9e-08
 Identities = 35/112 (31%), Positives = 61/112 (54%)
 Frame = +3

Query: 672  LATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTG 851
            LATG+       F     K ++++    +F+  + +SPDG   A+ + DG I I+D  TG
Sbjct: 121  LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 180

Query: 852  EKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFT 1007
            + + +L G   H   I ++++SPDS  L++AS D   K++DV   ++  T +
Sbjct: 181  KLLHTLEG---HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS 229



 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 56/246 (22%), Positives = 104/246 (42%), Gaps = 15/246 (6%)
 Frame = +3

Query: 1173 HKNGGKSYIYSGSHDGHINYWDSETGEND-SFAGKGHTNQVSRMTVDESGQL---VSCSM 1340
            +K      + +GS D  +  W     + D  ++ +GH  Q+  ++VD S  L    S S+
Sbjct: 27   NKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGH--QLGVVSVDISHTLPIAASSSL 84

Query: 1341 DDTVRYTSLSLRDYSGQGVVKLEVQPK---CVAVGPGGYTVVVC--IGQIVL--LKDQRK 1499
            D  +R   L     +G+ +  ++  P     +A  P    +     +G++ +  ++  +K
Sbjct: 85   DAHIRLWDLE----NGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 140

Query: 1500 CFSIDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGSTLKDEGKLLEAKG----PVT 1667
             +S+D  G     +A  P G+ +A G  DG + ++ I        GKLL        P+ 
Sbjct: 141  EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIA------TGKLLHTLEGHAMPIR 194

Query: 1668 DVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHFASGGMD 1847
             + +S D   L        + ++ V        +  GH + ++ +A+ PD+ HF S   D
Sbjct: 195  SLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS-GHASWVLNVAFCPDDTHFVSSSSD 253

Query: 1848 MMVYVW 1865
              V VW
Sbjct: 254  KSVKVW 259


>ref|NP_001157418.1| WD repeat-containing protein 38 [Bos taurus].
          Length = 296

 Score = 78.6 bits (192), Expect = 2e-14
 Identities = 70/248 (28%), Positives = 107/248 (43%), Gaps = 8/248 (3%)
 Frame = +3

Query: 357  HAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAG---KIKDIAWTED 527
            H   V   +++P G   AS      +R+WD T  + L     Q   G    ++ ++++ D
Sbjct: 62   HKGPVRFCRFSPDGRLFASTSCDRTIRLWDATDAKCL-----QVLKGHQRSVETVSFSHD 116

Query: 528  SKRIAVVGEGREKFGAVFLWD--SGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCA 701
            SK++A  G  +     V LW+  SG  +    GH   + S D   S    LATGS D+  
Sbjct: 117  SKQLASGGWDKR----VMLWEVQSGQVLRHFVGHRDSVQSSDFAPSSDC-LATGSWDSTI 171

Query: 702  AFFE---GPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLG 872
              ++   G P  F   +  H   ++C+ +SP G   A+ S D  I+I+   T   +  L 
Sbjct: 172  RMWDLRAGTPGIFHQELEGHRGNISCLCYSPSG-LLASGSWDKTIHIWKPSTRSLLIQL- 229

Query: 873  GSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQ 1052
              K H   + +I++SPD   L SA      KVWD N      T      VL+    C + 
Sbjct: 230  --KGHITWVKSIAFSPDGQQLASAGYSHMVKVWDCNTGKCTETL---KGVLNVAHACAFM 284

Query: 1053 KDHLLSIS 1076
             D  L +S
Sbjct: 285  PDGKLLVS 292



 Score = 71.6 bits (174), Expect = 3e-12
 Identities = 63/220 (28%), Positives = 90/220 (40%), Gaps = 2/220 (0%)
 Frame = +3

Query: 669  RLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKT 848
            RL T S+D C   +E    +  + +  H   V   RFSPDG  FA+ S D  I ++D   
Sbjct: 35   RLLTASEDGCVYGWETQSGRLLWRLRGHKGPVRFCRFSPDGRLFASTSCDRTIRLWDATD 94

Query: 849  GEKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLD 1028
             + +  L   K H   +  +S+S DS  L S   DK   +W+V    V+  F +G     
Sbjct: 95   AKCLQVL---KGHQRSVETVSFSHDSKQLASGGWDKRVMLWEVQSGQVLRHF-VGHRDSV 150

Query: 1029 QQLGCLWQKDHLLSISLSGYINYLD--KNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIY 1202
            Q        D L + S    I   D     P    + ++GH  +I CL    +G    + 
Sbjct: 151  QSSDFAPSSDCLATGSWDSTIRMWDLRAGTPGIFHQELEGHRGNISCLCYSPSG---LLA 207

Query: 1203 SGSHDGHINYWDSETGENDSFAGKGHTNQVSRMTVDESGQ 1322
            SGS D  I+ W   T  +     KGH   V  +     GQ
Sbjct: 208  SGSWDKTIHIWKPST-RSLLIQLKGHITWVKSIAFSPDGQ 246



 Score = 68.9 bits (167), Expect = 2e-11
 Identities = 64/222 (28%), Positives = 89/222 (40%), Gaps = 11/222 (4%)
 Frame = +3

Query: 744  GDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPD 923
            G H   VN   FSPDG R  TAS DG +Y ++ ++G  +  L G   H G +    +SPD
Sbjct: 18   GRHRGEVNSSAFSPDGQRLLTASEDGCVYGWETQSGRLLWRLRG---HKGPVRFCRFSPD 74

Query: 924  STHLLSASGDKTSKVWDVNVNSVVNTF--------TMGSNVLDQQLGC-LWQKDHLLSIS 1076
                 S S D+T ++WD      +           T+  +   +QL    W K  +L   
Sbjct: 75   GRLFASTSCDRTIRLWDATDAKCLQVLKGHQRSVETVSFSHDSKQLASGGWDKRVMLWEV 134

Query: 1077 LSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGEN 1256
             SG +           LR   GH  S+Q      +     + +GS D  I  WD   G  
Sbjct: 135  QSGQV-----------LRHFVGHRDSVQSSDFAPS--SDCLATGSWDSTIRMWDLRAGTP 181

Query: 1257 DSFAG--KGHTNQVSRMTVDESGQLVSCSMDDTVRYTSLSLR 1376
              F    +GH   +S +    SG L S S D T+     S R
Sbjct: 182  GIFHQELEGHRGNISCLCYSPSGLLASGSWDKTIHIWKPSTR 223


>ref|NP_001178436.1| apoptotic peptidase activating factor 1 [Bos taurus].
          Length = 1238

 Score = 75.9 bits (185), Expect = 1e-13
 Identities = 111/488 (22%), Positives = 182/488 (37%), Gaps = 67/488 (13%)
 Frame = +3

Query: 732  KFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAIS 911
            +  +  H+  V    FS DG R A+  AD  + ++  +TGEK+  +   KAH+  +   +
Sbjct: 597  RLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEI---KAHEDEVLCCA 653

Query: 912  WSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLSGYI 1091
            +S D   + + S DK  K+W+                                 S++G +
Sbjct: 654  FSADDKFIATCSVDKKVKIWN---------------------------------SMTGEL 680

Query: 1092 NYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWD--SETGENDSF 1265
                       +R+   HS+ + C     N     + +GS+D  +  WD   E   N  F
Sbjct: 681  -----------VRIYDEHSEQVNCCHFTNNSNHLLLATGSNDYFLKLWDLNQEECRNTMF 729

Query: 1266 AGKGHTNQVSRMTVDESGQ-LVSCSMDDTVRY---------TSLSLRDY---SGQGVVKL 1406
               GHTN VS        Q L SCS D T++           S++++ +   S +    L
Sbjct: 730  ---GHTNSVSHCRFSPDDQVLASCSADGTLKLWDVKSANERKSINVKQFFLNSEEPQEDL 786

Query: 1407 EVQPKCVAVGPGGYTVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVH----------PG 1556
            EV  KC +    G  ++V     V L      F I + G   E+   H          P 
Sbjct: 787  EVIVKCCSWSADGAKIMVAAKNKVFL------FDIHSSGLLAEMHMGHHSAVQYCDFSPH 840

Query: 1557 GETVAVGGADGNVRLYSILGSTLKDEG-KLLEAKGP---VTDVAYSHDG-AFLA------ 1703
                 V  +   V L+S+      D G K+ + +G    V  V +S DG +FL       
Sbjct: 841  NHLAVVALSQYCVELWSM------DSGLKVADCRGHLSWVHCVMFSPDGSSFLTSSDDQT 894

Query: 1704 --------VCDASKVVTVFSVADGYSENNVF---------------------YGHHAKIV 1796
                    VC  S  V    +   + EN V                      Y   A++ 
Sbjct: 895  IRLWETKKVCKNSATVLKQEIDVVFQENEVTVLAVDNIRRLQLINGNTGQIDYLTEAQVS 954

Query: 1797 CLAWSPDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHR--LHHVSSLAWLDEHTLVTTS 1970
            C   SP  ++ A GG D  + +  L +     + ++ H+  + H+   A  D  TL+++S
Sbjct: 955  CCCLSPHLQYLAFGGEDGAIQILELLNNRI-FQSRNGHKTTVRHIQFTA--DGKTLISSS 1011

Query: 1971 HDASVKEW 1994
             D++V+ W
Sbjct: 1012 DDSAVQIW 1019



 Score = 65.9 bits (159), Expect = 1e-10
 Identities = 120/569 (21%), Positives = 222/569 (39%), Gaps = 60/569 (10%)
 Frame = +3

Query: 357  HAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKR 536
            H   V  A ++  G  IAS      L+++     E LL  E +    ++   A++ D K 
Sbjct: 603  HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLL--EIKAHEDEVLCCAFSADDKF 660

Query: 537  IAVVGEGREKFGAVFLWDS--GSSVGEITGHNKVINSVDI-KQSRPYRLATGSDDNCAAF 707
            IA     ++    V +W+S  G  V     H++ +N       S    LATGS+D     
Sbjct: 661  IATCSVDKK----VKIWNSMTGELVRIYDEHSEQVNCCHFTNNSNHLLLATGSNDYFLKL 716

Query: 708  FEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLG----- 872
            ++    + + T+  H+  V+  RFSPD    A+ SADG + ++D K+  +  S+      
Sbjct: 717  WDLNQEECRNTMFGHTNSVSHCRFSPDDQVLASCSADGTLKLWDVKSANERKSINVKQFF 776

Query: 873  -GSKAHDGGIYAI----SWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQL 1037
              S+     +  I    SWS D   ++ A+ +K   ++D++ + ++    MG +   Q  
Sbjct: 777  LNSEEPQEDLEVIVKCCSWSADGAKIMVAAKNKVF-LFDIHSSGLLAEMHMGHHSAVQYC 835

Query: 1038 GCLWQKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHD 1217
                  +HL  ++LS Y   L   +    +   +GH   + C+    +G  S   + S D
Sbjct: 836  D-FSPHNHLAVVALSQYCVELWSMDSGLKVADCRGHLSWVHCVMFSPDG--SSFLTSSDD 892

Query: 1218 GHINYWDS-ETGENDSFAGK---------------------------GHTNQVSRMTVDE 1313
              I  W++ +  +N +   K                           G+T Q+  +T   
Sbjct: 893  QTIRLWETKKVCKNSATVLKQEIDVVFQENEVTVLAVDNIRRLQLINGNTGQIDYLT--- 949

Query: 1314 SGQLVSCSMDDTVRYTSLSLRDYSGQGVVK-LEVQPKCVAVGPGGYTVVV------CIGQ 1472
              Q+  C +   ++Y +    D    G ++ LE+    +     G+   V        G+
Sbjct: 950  EAQVSCCCLSPHLQYLAFGGED----GAIQILELLNNRIFQSRNGHKTTVRHIQFTADGK 1005

Query: 1473 IVLLKDQRKCFSIDN-PGYEPEVVAVHPGGETV-----------AVGGADGNVRLYSILG 1616
             ++         I N    +P  +  H   ETV                DG V++++I+ 
Sbjct: 1006 TLISSSDDSAVQIWNWQSEDPFFLQAHQ--ETVKDFRLLKNSRLLSWSFDGTVKVWNII- 1062

Query: 1617 STLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIV 1796
             T + E   +  +  V     S D    +   A K   ++S  +  S  +   GH   + 
Sbjct: 1063 -TRRIEKDFVCHQDTVLSCDISSDATKFSSTSADKTAKIWSF-ELLSPLHELRGHKGCVR 1120

Query: 1797 CLAWSPDNEHFASGGMDMMVYVWTLSDPE 1883
            C ++S +N   A+G  +  + +W +S+ E
Sbjct: 1121 CSSFSVNNTLLATGDDNGEIRIWNVSNGE 1149


>ref|NP_001033649.1| POC1 centriolar protein homolog A [Bos taurus].
          Length = 407

 Score = 75.9 bits (185), Expect = 1e-13
 Identities = 69/307 (22%), Positives = 123/307 (40%), Gaps = 1/307 (0%)
 Frame = +3

Query: 324  DNPAVADIYTEHAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKI 503
            ++P++   +  H   V    ++ +   +ASG +   L +W    +    +     FAG  
Sbjct: 7    EDPSLERHFKGHRDAVTSVDFSLNTKQLASGSMDSCLMVWHMKPQTRAYR-----FAGHK 61

Query: 504  KDIAWTEDSKRIAVVGEG-REKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLAT 680
              +     S    ++  G R+K   +++ +          H   + SV    S      T
Sbjct: 62   DAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFC-SDGQSFVT 120

Query: 681  GSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKV 860
             SDD     +     KF F++  H  +V C +FSPDG    +AS D  + ++D  + E V
Sbjct: 121  ASDDKTVKVWSTHRQKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECV 180

Query: 861  CSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLG 1040
             S      H G +  + + P  T + +A  D T KVWDV  + ++  + + S  ++  L 
Sbjct: 181  HSY---CEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVN-ALS 236

Query: 1041 CLWQKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDG 1220
                 ++L++ S    +  LD     + L  + GH      +   + G   Y  SG  D 
Sbjct: 237  FHPSGNYLVTASSDSTLKILDLME-GRLLYTLHGHQGPATTVAFSRTG--EYFASGGSDE 293

Query: 1221 HINYWDS 1241
             +  W S
Sbjct: 294  QVMVWKS 300



 Score = 62.8 bits (151), Expect = 1e-09
 Identities = 61/248 (24%), Positives = 100/248 (40%), Gaps = 6/248 (2%)
 Frame = +3

Query: 1140 GHSKSIQCLTVHKNGGKSYIYSGSHDGHINYW-DSETGENDSFAGKGHTNQVSRMTVDES 1316
            GH  ++ C+    +G    + SGS D  +  W  +  GE+  F  + HT  V  +     
Sbjct: 59   GHKDAVTCVNFSPSG--HLLASGSRDKTVRIWVPNVKGESTVF--RAHTATVRSVHFCSD 114

Query: 1317 GQ-LVSCSMDDTVRYTSLSLRDYSGQGVVKLEVQPKCVAVGPGGYTVVVCIGQIVLL--- 1484
            GQ  V+ S D TV+  S   + +       +    +C    P G  +V       +    
Sbjct: 115  GQSFVTASDDKTVKVWSTHRQKFLFSLSQHIN-WVRCAKFSPDGRLIVSASDDKTVKLWD 173

Query: 1485 KDQRKCF-SIDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGSTLKDEGKLLEAKGP 1661
            K  R+C  S    G     V  HP G  +A  G D  V+++ +    L    +L  A   
Sbjct: 174  KTSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAA-- 231

Query: 1662 VTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHFASGG 1841
            V  +++   G +L    +   + +  + +G     + +GH      +A+S   E+FASGG
Sbjct: 232  VNALSFHPSGNYLVTASSDSTLKILDLMEGRLLYTL-HGHQGPATTVAFSRTGEYFASGG 290

Query: 1842 MDMMVYVW 1865
             D  V VW
Sbjct: 291  SDEQVMVW 298



 Score = 62.0 bits (149), Expect = 2e-09
 Identities = 53/234 (22%), Positives = 91/234 (38%), Gaps = 9/234 (3%)
 Frame = +3

Query: 303 CVILRNIDNPAVADIYTEHAHQVVVAKYAPSGFYIASGDVSGKLRIW-------DTTQKE 461
           C+++ ++     A  +  H   V    ++PSG  +ASG     +RIW        T  + 
Sbjct: 42  CLMVWHMKPQTRAYRFAGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRA 101

Query: 462 HLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKFGAVFLWDSGSSVGEITGHNKVINS 641
           H        F    +      D K + V    R+KF              +   ++ IN 
Sbjct: 102 HTATVRSVHFCSDGQSFVTASDDKTVKVWSTHRQKF--------------LFSLSQHINW 147

Query: 642 VDIKQSRP--YRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASA 815
           V   +  P    + + SDD     ++    +   +  +H  FV  V F P G   A A  
Sbjct: 148 VRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGM 207

Query: 816 DGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDV 977
           D  + ++D +T      L   + H   + A+S+ P   +L++AS D T K+ D+
Sbjct: 208 DNTVKVWDVRTHR---LLQHYQLHSAAVNALSFHPSGNYLVTASSDSTLKILDL 258


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 79,258,206
Number of extensions: 2201016
Number of successful extensions: 11563
Number of sequences better than 1.0e-05: 96
Number of HSP's gapped: 10723
Number of HSP's successfully gapped: 181
Length of query: 734
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 624
Effective length of database: 14,041,694
Effective search space: 8762017056
Effective search space used: 8762017056
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007604
         (2204 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001124309.1| WD repeat domain 1 [Canis lupus familiaris].     1221   0.0  
Alignment   gi|XP_532646.2| PREDICTED: similar to WD repeat domain 51B [Can...    87   9e-17
Alignment   gi|XP_850117.1| PREDICTED: similar to WD repeat domain 5 [Canis...    82   2e-15
Alignment   gi|XP_541857.2| PREDICTED: similar to WD repeat domain 51A isof...    82   3e-15
Alignment   gi|XP_548262.2| PREDICTED: similar to Notchless homolog 1 (WD-r...    82   3e-15
Alignment   gi|XP_536215.2| PREDICTED: similar to WD repeat domain 61 isofo...    81   4e-15
Alignment   gi|XP_866627.1| PREDICTED: similar to F-box/WD-repeat protein 1...    73   1e-12
Alignment   gi|XP_852961.1| PREDICTED: similar to F-box and WD-40 domain pr...    73   1e-12
Alignment   gi|XP_866601.1| PREDICTED: similar to F-box and WD-40 domain pr...    73   1e-12
Alignment   gi|XP_536431.2| PREDICTED: similar to F-box and WD-40 domain pr...    73   1e-12

>ref|NP_001124309.1| WD repeat domain 1 [Canis lupus familiaris].
          Length = 606

 Score = 1221 bits (3159), Expect = 0.0
 Identities = 585/606 (96%), Positives = 600/606 (99%)
 Frame = +3

Query: 189  MPYEIKKVFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVILRNIDNPAVADIYTEHAHQ 368
            MPYEIKKVFASLPQVERGVSKI+GGDPKGNNFLYTNGKCVILRNIDNPA+ADIYTEHAHQ
Sbjct: 1    MPYEIKKVFASLPQVERGVSKILGGDPKGNNFLYTNGKCVILRNIDNPALADIYTEHAHQ 60

Query: 369  VVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV 548
            VVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV
Sbjct: 61   VVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV 120

Query: 549  GEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFK 728
            GEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFK
Sbjct: 121  GEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFK 180

Query: 729  FKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAI 908
            FKFTIGDH+RFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVC+LGG KAHDGGIYAI
Sbjct: 181  FKFTIGDHNRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCALGGDKAHDGGIYAI 240

Query: 909  SWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLSGY 1088
            SWSPDSTHLLSASGDKTSK+WDVNVNSVVNTFTMGS VLDQQLGCLWQKDHLLSISLSGY
Sbjct: 241  SWSPDSTHLLSASGDKTSKIWDVNVNSVVNTFTMGSTVLDQQLGCLWQKDHLLSISLSGY 300

Query: 1089 INYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFA 1268
            INYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFA
Sbjct: 301  INYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFA 360

Query: 1269 GKGHTNQVSRMTVDESGQLVSCSMDDTVRYTSLSLRDYSGQGVVKLEVQPKCVAVGPGGY 1448
            GKGHTNQVSRMTVDESGQLVSCSMDDTVRYT+L+LRDYSGQGVVK+++QPKCVAVGPGGY
Sbjct: 361  GKGHTNQVSRMTVDESGQLVSCSMDDTVRYTNLTLRDYSGQGVVKMDMQPKCVAVGPGGY 420

Query: 1449 TVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGSTLK 1628
             VVVCIGQIVLLKDQ+KCFSIDNPGYEPEVVAVHP G+ VAVGG DGNVRLYSILG+TLK
Sbjct: 421  AVVVCIGQIVLLKDQKKCFSIDNPGYEPEVVAVHPSGDMVAVGGTDGNVRLYSILGTTLK 480

Query: 1629 DEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAW 1808
            DEG++LEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAW
Sbjct: 481  DEGRVLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAW 540

Query: 1809 SPDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVK 1988
            SPDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVK
Sbjct: 541  SPDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVK 600

Query: 1989 EWTISY 2006
            EWTISY
Sbjct: 601  EWTISY 606


>ref|XP_532646.2| PREDICTED: similar to WD repeat domain 51B [Canis familiaris].
          Length = 833

 Score = 86.7 bits (213), Expect = 9e-17
 Identities = 76/349 (21%), Positives = 133/349 (38%), Gaps = 2/349 (0%)
 Frame = +3

Query: 309  ILRNIDNPAVADIYTEHAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQP 488
            + R  ++P +   +  H   +    ++PSG  +A+      L +W+   +    +Y    
Sbjct: 356  VTRISEDPVLERYFKGHKAAITSVDFSPSGKQLATASWDTFLMLWNCKPQARAFRYVGH- 414

Query: 489  FAGKIKDIAWTEDSKRIAVVGEGREKFGAVFLW--DSGSSVGEITGHNKVINSVDIKQSR 662
                 KD+  +     +  +     +   V LW  D      E   H   + SVD     
Sbjct: 415  -----KDVVTSVQFSPLGNLLASASRDRTVRLWIPDKRGKSSEFKAHTAPVRSVDFSADG 469

Query: 663  PYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDG 842
             + LAT S+D     +     +F +++  H+ +V C +FSPDG    + S D  I I+D 
Sbjct: 470  QF-LATASEDKSIKVWNMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWD- 527

Query: 843  KTGEKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNV 1022
             T  K C +       G    + ++P+ T + SA  D T K+WD+ VN ++  + +    
Sbjct: 528  -TTNKQC-VNNFSDSVGFANFVDFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQV---- 581

Query: 1023 LDQQLGCLWQKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIY 1202
                                                    HS  + C++ H +G  +YI 
Sbjct: 582  ----------------------------------------HSGGVNCVSFHPSG--NYII 599

Query: 1203 SGSHDGHINYWDSETGENDSFAGKGHTNQVSRMTVDESGQLVSCSMDDT 1349
            + S DG +   D   G    +  +GHT  V  ++  + G+L S    DT
Sbjct: 600  TASSDGTLKILDLLEGRL-IYTLQGHTGPVFTVSFSKGGELFSSGGADT 647



 Score = 51.6 bits (122), Expect = 3e-06
 Identities = 56/271 (20%), Positives = 110/271 (40%), Gaps = 9/271 (3%)
 Frame = +3

Query: 1203 SGSHDGHINYW-DSETGENDSFAGKGHTNQVSRMTVDESGQLVSCSMDDTVRYTSLSLRD 1379
            S S D  +  W   + G++  F  K HT  V  +     GQ ++ + +D         R 
Sbjct: 432  SASRDRTVRLWIPDKRGKSSEF--KAHTAPVRSVDFSADGQFLATASEDKSIKVWNMYRQ 489

Query: 1380 YSGQGVVKLEVQPKCVAVGPGGYTVVVCI-GQIVLLKD--QRKCFS--IDNPGYEPEVVA 1544
                 + +     +C    P G  +V C   + + + D   ++C +   D+ G+    V 
Sbjct: 490  RFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFA-NFVD 548

Query: 1545 VHPGGETVAVGGADGNVRLYSILGSTLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASKV 1724
             +P G  +A  G+D  V+++ I  + L    ++    G V  V++   G ++    +   
Sbjct: 549  FNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQV--HSGGVNCVSFHPSGNYIITASSDGT 606

Query: 1725 VTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHFASGGMDMMVYVWTLSDPETRVK--- 1895
            + +  + +G     +  GH   +  +++S   E F+SGG D  V +W  +      K   
Sbjct: 607  LKILDLLEGRLIYTL-QGHTGPVFTVSFSKGGELFSSGGADTQVLLWRTNFDYLNCKDMI 665

Query: 1896 IQDAHRLHHVSSLAWLDEHTLVTTSHDASVK 1988
             ++  RLH  SS   +D +      H+  ++
Sbjct: 666  KRNLKRLHFDSSPHLVDIYPRTPHPHEGKIE 696


>ref|XP_850117.1| PREDICTED: similar to WD repeat domain 5 [Canis familiaris].
          Length = 334

 Score = 82.4 bits (202), Expect = 2e-15
 Identities = 63/173 (36%), Positives = 88/173 (50%), Gaps = 5/173 (2%)
 Frame = +3

Query: 717  PPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYI---YDGKTGEKVCSLGGSKAH 887
            P +  KFT+  H++ V+ V+FSP+G   A++SAD  I I   YDGK  EK  S      H
Sbjct: 33   PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTIS-----GH 86

Query: 888  DGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLW--QKDH 1061
              GI  ++WS DS  L+SAS DKT K+WDV+    + T    SN +     C +  Q + 
Sbjct: 87   KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV---FCCNFNPQSNL 143

Query: 1062 LLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDG 1220
            ++S S    +   D     K L+ +  HS  +    VH N   S I S S+DG
Sbjct: 144  IVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVS--AVHFNRDGSLIVSSSYDG 193



 Score = 68.6 bits (166), Expect = 2e-11
 Identities = 56/227 (24%), Positives = 99/227 (43%), Gaps = 6/227 (2%)
 Frame = +3

Query: 357  HAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGK--IKDIAWTEDS 530
            H   V   K++P+G ++AS      ++IW         K+E      K  I D+AW+ DS
Sbjct: 44   HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDS 99

Query: 531  KRIAVVGEGREKFGAVFLWD--SGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAA 704
              +    + +     + +WD  SG  +  + GH+  +   +    +   + +GS D    
Sbjct: 100  NLLVSASDDK----TLKIWDVSSGKCLKTLKGHSNYVFCCNF-NPQSNLIVSGSFDESVR 154

Query: 705  FFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKA 884
             ++    K   T+  HS  V+ V F+ DG+   ++S DG      GKTG           
Sbjct: 155  IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC----GKTGNAASRCMKLIL 210

Query: 885  HDGG--IYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSN 1019
             D    +  + +SP+  ++L+A+ D T K+WD +    + T+T   N
Sbjct: 211  DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 257



 Score = 68.2 bits (165), Expect = 3e-11
 Identities = 65/262 (24%), Positives = 114/262 (43%), Gaps = 6/262 (2%)
 Frame = +3

Query: 612  ITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDG 791
            + GH K ++SV    +  + LA+ S D     +     KF+ TI  H   ++ V +S D 
Sbjct: 41   LAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99

Query: 792  NRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVW 971
            N   +AS D  + I+D  +G+ + +L   K H   ++  +++P S  ++S S D++ ++W
Sbjct: 100  NLLVSASDDKTLKIWDVSSGKCLKTL---KGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156

Query: 972  DVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLSGYINYLDK--NNPSKPLRVIKGH 1145
            DV     + T    S   D      + +D  L +S S Y     K  N  S+ +++I   
Sbjct: 157  DVKTGKCLKTLPAHS---DPVSAVHFNRDGSLIVS-SSYDGLCGKTGNAASRCMKLILDD 212

Query: 1146 SKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFAGKGHTNQ----VSRMTVDE 1313
                         GK YI + + D  +  WD   G+       GH N+     +  +V  
Sbjct: 213  DNPPVSFVKFSPNGK-YILAATLDNTLKLWDYSKGKCLK-TYTGHKNEKYCIFANFSVTG 270

Query: 1314 SGQLVSCSMDDTVRYTSLSLRD 1379
               +VS S D+ V   +L  ++
Sbjct: 271  GKWIVSGSEDNLVYIWNLQTKE 292


>ref|XP_541857.2| PREDICTED: similar to WD repeat domain 51A isoform 1 [Canis
            familiaris].
          Length = 406

 Score = 81.6 bits (200), Expect = 3e-15
 Identities = 72/307 (23%), Positives = 125/307 (40%), Gaps = 1/307 (0%)
 Frame = +3

Query: 324  DNPAVADIYTEHAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKI 503
            ++P++   +  H   +    ++ +   +ASG +   L +W    +    +     FAG  
Sbjct: 7    EDPSLERHFKGHRDAITSVDFSLNTKQLASGSMDSCLMVWHMKPQSRAYR-----FAGHK 61

Query: 504  KDIAWTEDSKRIAVVGEG-REKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLAT 680
              +     S    ++  G R+K   +++ +          H   + SV    S    L T
Sbjct: 62   DAVTCVNFSPSGHLLASGSRDKTVRIWIPNVKGESTVFRAHTATVRSVHFC-SDGQSLVT 120

Query: 681  GSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKV 860
             SDD     +     KF F++  H  +V C RFSPDG    +AS D  + ++D  + E V
Sbjct: 121  ASDDKTVKVWSTHRQKFLFSLSQHINWVRCARFSPDGRLIVSASDDKTVKLWDKTSRECV 180

Query: 861  CSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLG 1040
             S      H G +  + + P  T + +AS D T KVWDV  + ++  + + S  ++  L 
Sbjct: 181  HSY---CEHGGFVTYVDFHPSGTCIAAASMDNTVKVWDVRTHRLLQHYQLHSAAVN-ALS 236

Query: 1041 CLWQKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDG 1220
                 ++LL+ S    +  LD     + L  + GH      +   + G   Y  SG  D 
Sbjct: 237  FHPSGNYLLTASSDSTLKILDLME-GRLLYTLHGHQGPATTVAFSRTG--EYFASGGSDE 293

Query: 1221 HINYWDS 1241
             +  W S
Sbjct: 294  QVMVWKS 300



 Score = 65.9 bits (159), Expect = 2e-10
 Identities = 55/234 (23%), Positives = 94/234 (40%), Gaps = 9/234 (3%)
 Frame = +3

Query: 303 CVILRNIDNPAVADIYTEHAHQVVVAKYAPSGFYIASGDVSGKLRIW-------DTTQKE 461
           C+++ ++   + A  +  H   V    ++PSG  +ASG     +RIW        T  + 
Sbjct: 42  CLMVWHMKPQSRAYRFAGHKDAVTCVNFSPSGHLLASGSRDKTVRIWIPNVKGESTVFRA 101

Query: 462 HLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKFGAVFLWDSGSSVGEITGHNKVINS 641
           H        F    + +    D K + V    R+KF              +   ++ IN 
Sbjct: 102 HTATVRSVHFCSDGQSLVTASDDKTVKVWSTHRQKF--------------LFSLSQHINW 147

Query: 642 VDIKQSRP--YRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASA 815
           V   +  P    + + SDD     ++    +   +  +H  FV  V F P G   A AS 
Sbjct: 148 VRCARFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEHGGFVTYVDFHPSGTCIAAASM 207

Query: 816 DGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDV 977
           D  + ++D +T      L   + H   + A+S+ P   +LL+AS D T K+ D+
Sbjct: 208 DNTVKVWDVRTHR---LLQHYQLHSAAVNALSFHPSGNYLLTASSDSTLKILDL 258



 Score = 61.6 bits (148), Expect = 3e-09
 Identities = 61/248 (24%), Positives = 100/248 (40%), Gaps = 6/248 (2%)
 Frame = +3

Query: 1140 GHSKSIQCLTVHKNGGKSYIYSGSHDGHINYW-DSETGENDSFAGKGHTNQVSRMTVDES 1316
            GH  ++ C+    +G    + SGS D  +  W  +  GE+  F  + HT  V  +     
Sbjct: 59   GHKDAVTCVNFSPSG--HLLASGSRDKTVRIWIPNVKGESTVF--RAHTATVRSVHFCSD 114

Query: 1317 GQ-LVSCSMDDTVRYTSLSLRDYSGQGVVKLEVQPKCVAVGPGGYTVVVCIGQIVLL--- 1484
            GQ LV+ S D TV+  S   + +       +    +C    P G  +V       +    
Sbjct: 115  GQSLVTASDDKTVKVWSTHRQKFLFSLSQHIN-WVRCARFSPDGRLIVSASDDKTVKLWD 173

Query: 1485 KDQRKCF-SIDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGSTLKDEGKLLEAKGP 1661
            K  R+C  S    G     V  HP G  +A    D  V+++ +    L    +L  A   
Sbjct: 174  KTSRECVHSYCEHGGFVTYVDFHPSGTCIAAASMDNTVKVWDVRTHRLLQHYQLHSAA-- 231

Query: 1662 VTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHFASGG 1841
            V  +++   G +L    +   + +  + +G     + +GH      +A+S   E+FASGG
Sbjct: 232  VNALSFHPSGNYLLTASSDSTLKILDLMEGRLLYTL-HGHQGPATTVAFSRTGEYFASGG 290

Query: 1842 MDMMVYVW 1865
             D  V VW
Sbjct: 291  SDEQVMVW 298


>ref|XP_548262.2| PREDICTED: similar to Notchless homolog 1 (WD-repeat protein
            HUSSY-07) [Canis familiaris].
          Length = 468

 Score = 81.6 bits (200), Expect = 3e-15
 Identities = 91/425 (21%), Positives = 162/425 (38%), Gaps = 13/425 (3%)
 Frame = +3

Query: 612  ITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDG 791
            + GH++ + SV    +  Y LA+GS D    F++       FT   H  +V  + +SPDG
Sbjct: 96   LEGHSEAVISVAFSPTGKY-LASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 154

Query: 792  NRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISW-----SPDSTHLLSASGDK 956
               A+   +GQI ++D  TG++V  +     H   I  +SW     +P+  ++ S+S D 
Sbjct: 155  KTLASGCKNGQILLWDPSTGKQVGRV--LAGHSKWITGLSWEPLHANPECRYMASSSKDG 212

Query: 957  TSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLSGYINYLDKNNPSKPLRVI 1136
            + +VWD                                                +  R++
Sbjct: 213  SVRVWDTTA--------------------------------------------GRCERIL 228

Query: 1137 KGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGE-NDSFAGKGHTNQVSRMTVD- 1310
             GH++S+ CL   + GG   +YS S D  I  W +  G    +  G GH      ++ D 
Sbjct: 229  TGHTQSVTCL---RWGGDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDY 285

Query: 1311 --ESGQLVSCSMDDTVRYTSLSLRDYSGQGVVKLEV----QPKCVAVGPGGYTVVVCIGQ 1472
               +G           +    SL++   + + +  +     P+ +  G   +T+ +    
Sbjct: 286  ALRTGAFEPAEASINAQDLQGSLQELKDRALRRYNLVRGQGPERLVSGSDDFTLFMWSP- 344

Query: 1473 IVLLKDQRKCFSIDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGSTLKDEGKLLEA 1652
                +D++    +         V   P    +A    D +++L+   G T K    L   
Sbjct: 345  ---AEDKKPLARMTGHQALINQVLFSPDSRIIASASFDKSIKLWD--GRTGKYLASLRGH 399

Query: 1653 KGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHFA 1832
               V  +A+S D   L    +   + V+ V       ++  GH  ++  + WSPD +  A
Sbjct: 400  VAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLAADL-PGHADEVYAVDWSPDGQRVA 458

Query: 1833 SGGMD 1847
            SGG D
Sbjct: 459  SGGKD 463



 Score = 73.9 bits (180), Expect = 6e-13
 Identities = 92/386 (23%), Positives = 154/386 (39%), Gaps = 12/386 (3%)
 Frame = +3

Query: 879  KAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKD 1058
            + H   + ++++SP   +L S SGD T + WD++  +   T     + +   L   W  D
Sbjct: 97   EGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWV---LSISWSPD 153

Query: 1059 H--LLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLT---VHKNGGKSYIYSGSHDGH 1223
               L S   +G I   D +   +  RV+ GHSK I  L+   +H N    Y+ S S DG 
Sbjct: 154  GKTLASGCKNGQILLWDPSTGKQVGRVLAGHSKWITGLSWEPLHANPECRYMASSSKDGS 213

Query: 1224 INYWDSETGENDSFAGKGHTNQVSRMTVDESGQLVSCSMDDTVRYTSLSLRDYSGQGVVK 1403
            +  WD+  G  +     GHT  V+ +     G L S S D T++         +  GV+ 
Sbjct: 214  VRVWDTTAGRCERIL-TGHTQSVTCLRWGGDGLLYSASQDRTIKVWR------AHDGVLC 266

Query: 1404 LEVQPKCVAVGPGGYTVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVHPGGETVAVGGA 1583
              +Q      G G +     +  + L  D    +++    +EP                A
Sbjct: 267  RTLQ------GHGHW-----VNTMALSTD----YALRTGAFEP----------------A 295

Query: 1584 DGNVRLYSILGS--TLKDEG----KLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVA 1745
            + ++    + GS   LKD       L+  +GP   V+ S D              ++S A
Sbjct: 296  EASINAQDLQGSLQELKDRALRRYNLVRGQGPERLVSGSDDFTLF----------MWSPA 345

Query: 1746 DGYSENNVFYGHHAKIVCLAWSPDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHV 1925
            +         GH A I  + +SPD+   AS   D  + +W     +    ++    +  V
Sbjct: 346  EDKKPLARMTGHQALINQVLFSPDSRIIASASFDKSIKLWDGRTGKYLASLRG--HVAAV 403

Query: 1926 SSLAW-LDEHTLVTTSHDASVKEWTI 2000
              +AW  D   LV+ S D+++K W +
Sbjct: 404  YQIAWSADSRLLVSGSSDSTLKVWDV 429



 Score = 62.4 bits (150), Expect = 2e-09
 Identities = 99/430 (23%), Positives = 169/430 (39%), Gaps = 15/430 (3%)
 Frame = +3

Query: 357  HAHQVVVAKYAPSGFYIASGDVSGKLRIWD-TTQKEHLLKYEYQPFAGKIKDIAWTEDSK 533
            H+  V+   ++P+G Y+ASG     +R WD +T+  H   +  Q     +  I+W+ D K
Sbjct: 99   HSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPH---FTCQGHRHWVLSISWSPDGK 155

Query: 534  RIAVVGEGREKFGAVFLWD--SGSSVGEI-TGHNKVINSVDIK--QSRP--YRLATGSDD 692
             +A       K G + LWD  +G  VG +  GH+K I  +  +   + P    +A+ S D
Sbjct: 156  TLA----SGCKNGQILLWDPSTGKQVGRVLAGHSKWITGLSWEPLHANPECRYMASSSKD 211

Query: 693  NCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLG 872
                 ++    + +  +  H++ V C+R+  DG  + +AS D  I ++    G    +L 
Sbjct: 212  GSVRVWDTTAGRCERILTGHTQSVTCLRWGGDGLLY-SASQDRTIKVWRAHDGVLCRTLQ 270

Query: 873  GSKAHDGGIYAISWSPDSTHLLSA--SGDKTSKVWDV--NVNSVVNTFTMGSNVLDQQLG 1040
            G   H   +  ++ S D      A    + +    D+  ++  + +      N++  Q  
Sbjct: 271  G---HGHWVNTMALSTDYALRTGAFEPAEASINAQDLQGSLQELKDRALRRYNLVRGQ-- 325

Query: 1041 CLWQKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDG 1220
                 + L+S S    +         KPL  + GH   I    V  +     I S S D 
Sbjct: 326  ---GPERLVSGSDDFTLFMWSPAEDKKPLARMTGHQALIN--QVLFSPDSRIIASASFDK 380

Query: 1221 HINYWDSETGENDSFAGKGHTNQVSRMTVD-ESGQLVSCSMDDTVRYTSLSLRDYSGQGV 1397
             I  WD  TG+  + + +GH   V ++    +S  LVS S D T++   +  +       
Sbjct: 381  SIKLWDGRTGKYLA-SLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQK------ 433

Query: 1398 VKLEVQPKCVAVGPGGYTVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAV--HPGGETVA 1571
                                                + D PG+  EV AV   P G+ VA
Sbjct: 434  -----------------------------------LAADLPGHADEVYAVDWSPDGQRVA 458

Query: 1572 VGGADGNVRL 1601
             GG D  +R+
Sbjct: 459  SGGKDKCLRM 468


>ref|XP_536215.2| PREDICTED: similar to WD repeat domain 61 isoform 1 [Canis
            familiaris].
          Length = 305

 Score = 81.3 bits (199), Expect = 4e-15
 Identities = 59/199 (29%), Positives = 92/199 (46%)
 Frame = +3

Query: 408  ASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKFGAVFLW 587
            AS  +   +R+WD    + +   +  P       +A++ DS+ +A  G    K   +F  
Sbjct: 80   ASSSLDAHIRLWDLDNGKQIKSIDAGPVDAWT--LAFSPDSQYLAT-GTHVGKVN-IFGV 135

Query: 588  DSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVN 767
            +SG     +    K I S+       Y LA+G+ D     F+    K   T+  H+  + 
Sbjct: 136  ESGKKEYSLDTRGKFILSIAYSPDGKY-LASGAIDGIINIFDIATGKLLHTLEGHAMPIR 194

Query: 768  CVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDSTHLLSAS 947
             + FSPD     TAS DG I IYD +      +L G   H   +  +++ PD TH +S+S
Sbjct: 195  SLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG---HASWVLNVAFCPDDTHFVSSS 251

Query: 948  GDKTSKVWDVNVNSVVNTF 1004
             DK+ KVWDV   + V+TF
Sbjct: 252  SDKSVKVWDVGTRTCVHTF 270



 Score = 56.6 bits (135), Expect = 1e-07
 Identities = 35/112 (31%), Positives = 61/112 (54%)
 Frame = +3

Query: 672  LATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTG 851
            LATG+       F     K ++++    +F+  + +SPDG   A+ + DG I I+D  TG
Sbjct: 121  LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 180

Query: 852  EKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFT 1007
            + + +L G   H   I ++++SPDS  L++AS D   K++DV   ++  T +
Sbjct: 181  KLLHTLEG---HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS 229



 Score = 50.1 bits (118), Expect = 9e-06
 Identities = 56/246 (22%), Positives = 103/246 (41%), Gaps = 15/246 (6%)
 Frame = +3

Query: 1173 HKNGGKSYIYSGSHDGHINYWDSETGEND-SFAGKGHTNQVSRMTVDESGQL---VSCSM 1340
            +K      + +GS D  +  W       D  ++ +GH  Q+  ++VD S  L    S S+
Sbjct: 27   NKKENSETVVTGSLDDLVKVWKWCDERLDLQWSLEGH--QLGVVSVDISHTLPIAASSSL 84

Query: 1341 DDTVRYTSLSLRDYSGQGVVKLEVQPK---CVAVGPGGYTVVVC--IGQIVL--LKDQRK 1499
            D  +R   L     +G+ +  ++  P     +A  P    +     +G++ +  ++  +K
Sbjct: 85   DAHIRLWDLD----NGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 140

Query: 1500 CFSIDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGSTLKDEGKLLEAKG----PVT 1667
             +S+D  G     +A  P G+ +A G  DG + ++ I        GKLL        P+ 
Sbjct: 141  EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIA------TGKLLHTLEGHAMPIR 194

Query: 1668 DVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHFASGGMD 1847
             + +S D   L        + ++ V        +  GH + ++ +A+ PD+ HF S   D
Sbjct: 195  SLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS-GHASWVLNVAFCPDDTHFVSSSSD 253

Query: 1848 MMVYVW 1865
              V VW
Sbjct: 254  KSVKVW 259


>ref|XP_866627.1| PREDICTED: similar to F-box/WD-repeat protein 11 (F-box/WD-repeat
            protein 1B) (F-box and WD-repeats protein beta-TrCP2)
            isoform 8 [Canis familiaris].
          Length = 542

 Score = 72.8 bits (177), Expect = 1e-12
 Identities = 74/294 (25%), Positives = 123/294 (41%), Gaps = 16/294 (5%)
 Frame = +3

Query: 519  TEDSKRIAVVGEGREKF------GAVFLWDSGS--SVGEITGHNKVINSVDIKQSRPYRL 674
            +E+SK +  +    EK        ++ +WD  S   +  +TGH     SV   Q     +
Sbjct: 237  SENSKGVYCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTGHT---GSVLCLQYDERVI 293

Query: 675  ATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGE 854
             TGS D+    ++    +   T+  H+  V  +RFS       T S D  I ++D  +  
Sbjct: 294  VTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFS--NGLMVTCSKDRSIAVWDMASAT 351

Query: 855  KVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQ 1034
             +        H   +  + +  D  +++SASGD+T KVW  +    V T     N   + 
Sbjct: 352  DITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTL----NGHKRG 405

Query: 1035 LGCLWQKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSH 1214
            + CL  +D L+    S     L        LRV++GH + ++C+          I SG++
Sbjct: 406  IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR----IVSGAY 461

Query: 1215 DGHINYWDSETGENDSFAGK--------GHTNQVSRMTVDESGQLVSCSMDDTV 1352
            DG I  WD +   +               H+ +V R+  DE  Q++S S DDT+
Sbjct: 462  DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF-QIISSSHDDTI 514


>ref|XP_852961.1| PREDICTED: similar to F-box and WD-40 domain protein 11 isoform 2
            [Canis familiaris].
          Length = 563

 Score = 72.8 bits (177), Expect = 1e-12
 Identities = 74/294 (25%), Positives = 123/294 (41%), Gaps = 16/294 (5%)
 Frame = +3

Query: 519  TEDSKRIAVVGEGREKF------GAVFLWDSGS--SVGEITGHNKVINSVDIKQSRPYRL 674
            +E+SK +  +    EK        ++ +WD  S   +  +TGH     SV   Q     +
Sbjct: 258  SENSKGVYCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTGHT---GSVLCLQYDERVI 314

Query: 675  ATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGE 854
             TGS D+    ++    +   T+  H+  V  +RFS       T S D  I ++D  +  
Sbjct: 315  VTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFS--NGLMVTCSKDRSIAVWDMASAT 372

Query: 855  KVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQ 1034
             +        H   +  + +  D  +++SASGD+T KVW  +    V T     N   + 
Sbjct: 373  DITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTL----NGHKRG 426

Query: 1035 LGCLWQKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSH 1214
            + CL  +D L+    S     L        LRV++GH + ++C+          I SG++
Sbjct: 427  IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR----IVSGAY 482

Query: 1215 DGHINYWDSETGENDSFAGK--------GHTNQVSRMTVDESGQLVSCSMDDTV 1352
            DG I  WD +   +               H+ +V R+  DE  Q++S S DDT+
Sbjct: 483  DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF-QIISSSHDDTI 535


>ref|XP_866601.1| PREDICTED: similar to F-box and WD-40 domain protein 11 isoform 7
            [Canis familiaris].
          Length = 531

 Score = 72.8 bits (177), Expect = 1e-12
 Identities = 74/294 (25%), Positives = 123/294 (41%), Gaps = 16/294 (5%)
 Frame = +3

Query: 519  TEDSKRIAVVGEGREKF------GAVFLWDSGS--SVGEITGHNKVINSVDIKQSRPYRL 674
            +E+SK +  +    EK        ++ +WD  S   +  +TGH     SV   Q     +
Sbjct: 226  SENSKGVYCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTGHT---GSVLCLQYDERVI 282

Query: 675  ATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGE 854
             TGS D+    ++    +   T+  H+  V  +RFS       T S D  I ++D  +  
Sbjct: 283  VTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFS--NGLMVTCSKDRSIAVWDMASAT 340

Query: 855  KVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQ 1034
             +        H   +  + +  D  +++SASGD+T KVW  +    V T     N   + 
Sbjct: 341  DITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTL----NGHKRG 394

Query: 1035 LGCLWQKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSH 1214
            + CL  +D L+    S     L        LRV++GH + ++C+          I SG++
Sbjct: 395  IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR----IVSGAY 450

Query: 1215 DGHINYWDSETGENDSFAGK--------GHTNQVSRMTVDESGQLVSCSMDDTV 1352
            DG I  WD +   +               H+ +V R+  DE  Q++S S DDT+
Sbjct: 451  DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF-QIISSSHDDTI 503


>ref|XP_536431.2| PREDICTED: similar to F-box and WD-40 domain protein 1B isoform B
            isoform 1 [Canis familiaris].
          Length = 529

 Score = 72.8 bits (177), Expect = 1e-12
 Identities = 74/294 (25%), Positives = 123/294 (41%), Gaps = 16/294 (5%)
 Frame = +3

Query: 519  TEDSKRIAVVGEGREKF------GAVFLWDSGS--SVGEITGHNKVINSVDIKQSRPYRL 674
            +E+SK +  +    EK        ++ +WD  S   +  +TGH     SV   Q     +
Sbjct: 224  SENSKGVYCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTGHT---GSVLCLQYDERVI 280

Query: 675  ATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGE 854
             TGS D+    ++    +   T+  H+  V  +RFS       T S D  I ++D  +  
Sbjct: 281  VTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFS--NGLMVTCSKDRSIAVWDMASAT 338

Query: 855  KVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQ 1034
             +        H   +  + +  D  +++SASGD+T KVW  +    V T     N   + 
Sbjct: 339  DITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTL----NGHKRG 392

Query: 1035 LGCLWQKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSH 1214
            + CL  +D L+    S     L        LRV++GH + ++C+          I SG++
Sbjct: 393  IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR----IVSGAY 448

Query: 1215 DGHINYWDSETGENDSFAGK--------GHTNQVSRMTVDESGQLVSCSMDDTV 1352
            DG I  WD +   +               H+ +V R+  DE  Q++S S DDT+
Sbjct: 449  DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF-QIISSSHDDTI 501


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 82,797,872
Number of extensions: 2264294
Number of successful extensions: 12637
Number of sequences better than 1.0e-05: 124
Number of HSP's gapped: 11595
Number of HSP's successfully gapped: 203
Length of query: 734
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 624
Effective length of database: 15,207,544
Effective search space: 9489507456
Effective search space used: 9489507456
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007604
         (2204 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_035845.1| WD repeat-containing protein 1 [Mus musculus].      1210   0.0  
Alignment   gi|NP_543124.1| WD repeat-containing protein 5 [Mus musculus].        92   1e-18
Alignment   gi|NP_663406.2| notchless protein homolog 1 [Mus musculus].           86   2e-16
Alignment   gi|NP_081389.1| WD repeat-containing protein 5B [Mus musculus].       83   8e-16
Alignment   gi|NP_001020546.1| WD repeat-containing protein 61 isoform a [M...    82   2e-15
Alignment   gi|NP_075680.1| WD repeat-containing protein 61 isoform a [Mus ...    82   2e-15
Alignment   gi|NP_082016.1| POC1 centriolar protein homolog B [Mus musculus].     80   5e-15
Alignment   gi|NP_001020547.1| WD repeat-containing protein 61 isoform b [M...    76   1e-13
Alignment   gi|NP_081630.2| POC1 centriolar protein homolog A [Mus musculus].     76   1e-13
Alignment   gi|NP_083963.1| WD repeat-containing protein 38 [Mus musculus].       74   5e-13

>ref|NP_035845.1| WD repeat-containing protein 1 [Mus musculus].
          Length = 606

 Score = 1210 bits (3131), Expect = 0.0
 Identities = 579/606 (95%), Positives = 601/606 (99%)
 Frame = +3

Query: 189  MPYEIKKVFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVILRNIDNPAVADIYTEHAHQ 368
            MPYEIKKVFASLPQVERGVSKI+GGDPKG++FLYTNGKCVILRNIDNPA+ADIYTEHAHQ
Sbjct: 1    MPYEIKKVFASLPQVERGVSKILGGDPKGDHFLYTNGKCVILRNIDNPAIADIYTEHAHQ 60

Query: 369  VVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV 548
            VVVAKYAPSGFYIASGD+SGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV
Sbjct: 61   VVVAKYAPSGFYIASGDISGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV 120

Query: 549  GEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFK 728
            GEGREKFGAVFLWD+GSSVGEITGHNKVINSVDIKQ+RPYRLATGSDDNCAAFFEGPPFK
Sbjct: 121  GEGREKFGAVFLWDTGSSVGEITGHNKVINSVDIKQTRPYRLATGSDDNCAAFFEGPPFK 180

Query: 729  FKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAI 908
            FKFTIGDHSRFVNCVRFSPDGNRFATASADGQI+IYDGKTGEKVC+LG SKAHDGGIYAI
Sbjct: 181  FKFTIGDHSRFVNCVRFSPDGNRFATASADGQIFIYDGKTGEKVCALGESKAHDGGIYAI 240

Query: 909  SWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLSGY 1088
            SWSPDSTHLLSASGDKTSK+WDVNVNSVV+TF MGSNVLDQQLGCLWQKDHLLSISLSGY
Sbjct: 241  SWSPDSTHLLSASGDKTSKIWDVNVNSVVSTFPMGSNVLDQQLGCLWQKDHLLSISLSGY 300

Query: 1089 INYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFA 1268
            INYLDKNNPSKPLRVIKGHSKSIQCLTVH+NGGKSYIYSGSHDGHINYWDSETGENDSF+
Sbjct: 301  INYLDKNNPSKPLRVIKGHSKSIQCLTVHRNGGKSYIYSGSHDGHINYWDSETGENDSFS 360

Query: 1269 GKGHTNQVSRMTVDESGQLVSCSMDDTVRYTSLSLRDYSGQGVVKLEVQPKCVAVGPGGY 1448
            GKGHTNQVSRMTV+ES QLVSCSMDDTVRYT+L+LRDYSGQGVVKL+VQPKCVAVGPGGY
Sbjct: 361  GKGHTNQVSRMTVNESEQLVSCSMDDTVRYTNLTLRDYSGQGVVKLDVQPKCVAVGPGGY 420

Query: 1449 TVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGSTLK 1628
            TVVVCIGQIVLLKDQ+KCFSIDNPGYEPEVVAVHPGG+TVAVGG DGNVR+YSIL STLK
Sbjct: 421  TVVVCIGQIVLLKDQKKCFSIDNPGYEPEVVAVHPGGDTVAVGGTDGNVRVYSILASTLK 480

Query: 1629 DEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAW 1808
            DEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAW
Sbjct: 481  DEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAW 540

Query: 1809 SPDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVK 1988
            SPDNEHFASGGMDMMVYVWTLSDPET+VKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVK
Sbjct: 541  SPDNEHFASGGMDMMVYVWTLSDPETKVKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVK 600

Query: 1989 EWTISY 2006
            EWTI+Y
Sbjct: 601  EWTITY 606


>ref|NP_543124.1| WD repeat-containing protein 5 [Mus musculus].
          Length = 334

 Score = 92.4 bits (228), Expect = 1e-18
 Identities = 75/234 (32%), Positives = 116/234 (49%), Gaps = 10/234 (4%)
 Frame = +3

Query: 717  PPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYI---YDGKTGEKVCSLGGSKAH 887
            P +  KFT+  H++ V+ V+FSP+G   A++SAD  I I   YDGK  EK  S      H
Sbjct: 33   PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTIS-----GH 86

Query: 888  DGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLW--QKDH 1061
              GI  ++WS DS  L+SAS DKT K+WDV+    + T    SN +     C +  Q + 
Sbjct: 87   KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV---FCCNFNPQSNL 143

Query: 1062 LLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDS 1241
            ++S S    +   D     K L+ +  HS  +    VH N   S I S S+DG    WD+
Sbjct: 144  IVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVS--AVHFNRDGSLIVSSSYDGLCRIWDT 200

Query: 1242 ETGENDSFAGKGHTNQVSRMTVDESGQ-LVSCSMDDTVRYTSLS----LRDYSG 1388
             +G+            VS +    +G+ +++ ++D+T++    S    L+ Y+G
Sbjct: 201  ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 254



 Score = 73.2 bits (178), Expect = 8e-13
 Identities = 73/316 (23%), Positives = 128/316 (40%), Gaps = 4/316 (1%)
 Frame = +3

Query: 357  HAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGK--IKDIAWTEDS 530
            H   V   K++P+G ++AS      ++IW         K+E      K  I D+AW+ DS
Sbjct: 44   HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDS 99

Query: 531  KRIAVVGEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFF 710
                                           N ++++ D K  + + +++G         
Sbjct: 100  -------------------------------NLLVSASDDKTLKIWDVSSG--------- 119

Query: 711  EGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHD 890
                 K   T+  HS +V C  F+P  N   + S D  + I+D KTG+ + +L    AH 
Sbjct: 120  -----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL---PAHS 171

Query: 891  GGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLS 1070
              + A+ ++ D + ++S+S D   ++WD      + T     N     +       ++L+
Sbjct: 172  DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 231

Query: 1071 ISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVH--KNGGKSYIYSGSHDGHINYWDSE 1244
             +L   +   D +   K L+   GH     C+  +    GGK +I SGS D  +  W+ +
Sbjct: 232  ATLDNTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQ 289

Query: 1245 TGENDSFAGKGHTNQV 1292
            T E      +GHT+ V
Sbjct: 290  TKEIVQKL-QGHTDVV 304



 Score = 67.4 bits (163), Expect = 4e-11
 Identities = 63/262 (24%), Positives = 113/262 (43%), Gaps = 6/262 (2%)
 Frame = +3

Query: 612  ITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDG 791
            + GH K ++SV    +  + LA+ S D     +     KF+ TI  H   ++ V +S D 
Sbjct: 41   LAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99

Query: 792  NRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVW 971
            N   +AS D  + I+D  +G+ + +L   K H   ++  +++P S  ++S S D++ ++W
Sbjct: 100  NLLVSASDDKTLKIWDVSSGKCLKTL---KGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156

Query: 972  DVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLS--GYINYLDKNNPSKPLRVIKGH 1145
            DV     + T    S   D      + +D  L +S S  G     D  +      +I   
Sbjct: 157  DVKTGKCLKTLPAHS---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 213

Query: 1146 SKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFAGKGHTNQ----VSRMTVDE 1313
            +  +  +    NG   YI + + D  +  WD   G+       GH N+     +  +V  
Sbjct: 214  NPPVSFVKFSPNG--KYILAATLDNTLKLWDYSKGKCLK-TYTGHKNEKYCIFANFSVTG 270

Query: 1314 SGQLVSCSMDDTVRYTSLSLRD 1379
               +VS S D+ V   +L  ++
Sbjct: 271  GKWIVSGSEDNLVYIWNLQTKE 292



 Score = 50.8 bits (120), Expect = 4e-06
 Identities = 73/316 (23%), Positives = 126/316 (39%), Gaps = 19/316 (6%)
 Frame = +3

Query: 1104 KNNPSKPLRVIK----GHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFAG 1271
            K  P KP   +K    GH+K++  +    NG   ++ S S D  I  W +  G+ +    
Sbjct: 27   KPTPVKPNYALKFTLAGHTKAVSSVKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTIS 84

Query: 1272 KGHTNQVSRMT-VDESGQLVSCSMDDTVRYTSLS----LRDYSGQG--VVKLEVQPKCVA 1430
             GH   +S +    +S  LVS S D T++   +S    L+   G    V      P+   
Sbjct: 85   -GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 143

Query: 1431 VGPGGYTVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVH--PGGETVAVGGADGNVRLY 1604
            +  G +   V I  +       KC     P +   V AVH    G  +     DG  R++
Sbjct: 144  IVSGSFDESVRIWDV----KTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198

Query: 1605 SIL-GSTLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGH 1781
                G  LK    + +   PV+ V +S +G ++        + ++  + G      + GH
Sbjct: 199  DTASGQCLKT--LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGH 255

Query: 1782 HAKIVCLAWS---PDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEH 1952
              +  C+  +      +   SG  D +VY+W L   E   K+Q  H    +S+     E+
Sbjct: 256  KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISTACHPTEN 314

Query: 1953 TLVTTS--HDASVKEW 1994
             + + +  +D ++K W
Sbjct: 315  IIASAALENDKTIKLW 330


>ref|NP_663406.2| notchless protein homolog 1 [Mus musculus].
          Length = 485

 Score = 85.5 bits (210), Expect = 2e-16
 Identities = 98/433 (22%), Positives = 167/433 (38%), Gaps = 15/433 (3%)
 Frame = +3

Query: 612  ITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDG 791
            + GH++ + SV    +  Y LA+GS D    F++       FT   H  +V  + +SPDG
Sbjct: 110  LEGHSEAVISVAFSPTGKY-LASGSGDTTVRFWDLSTETPHFTCKGHRHWVLSISWSPDG 168

Query: 792  NRFATASADGQIYIYDGKTGEKV-CSLGGSKAHDGGIYAISW-----SPDSTHLLSASGD 953
             + A+   +GQ+ ++D  TG +V  +L G   H   I  +SW     +P+  ++ S+S D
Sbjct: 169  KKLASGCKNGQVLLWDPSTGLQVGRTLTG---HSKWITGLSWEPLHMNPECRYVASSSKD 225

Query: 954  KTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLSGYINYLDKNNPSKPLRV 1133
             + +VWD                                                +  R+
Sbjct: 226  GSVRVWDTTA--------------------------------------------GRCERI 241

Query: 1134 IKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGE-NDSFAGKGH--------TN 1286
            + GH++S+ CL   + GG   +YS S D  I  W +  G    +  G GH        T+
Sbjct: 242  LTGHTQSVTCL---RWGGDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTD 298

Query: 1287 QVSRMTVDESGQLVSCSMDDTVRYTSLSLRDYSGQGVVKLEVQPKCVAVGPGGYTVVVCI 1466
               R    E  +    + D       L  R  S   +V+ +  P+ +  G   +T+ +  
Sbjct: 299  YALRTGAFEPAEATVNAQDLQGSLKELKERASSRYNLVRGQ-GPERLVSGSDDFTLFLWS 357

Query: 1467 GQIVLLKDQRKCFSIDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGSTLKDEGKLL 1646
                  +D++    +         V   P    VA    D +++L+   G T K    L 
Sbjct: 358  P----AEDKKPLARMTGHQALINQVLFSPDSRIVASASFDKSIKLWD--GRTGKYLASLR 411

Query: 1647 EAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEH 1826
                 V  +A+S D   L    +   + V+ V       ++  GH  ++  + WSPD + 
Sbjct: 412  GHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLATDL-PGHADEVYAVDWSPDGQR 470

Query: 1827 FASGGMDMMVYVW 1865
             ASGG D  + +W
Sbjct: 471  VASGGKDKCLRIW 483



 Score = 65.9 bits (159), Expect = 1e-10
 Identities = 100/431 (23%), Positives = 173/431 (40%), Gaps = 15/431 (3%)
 Frame = +3

Query: 357  HAHQVVVAKYAPSGFYIASGDVSGKLRIWD-TTQKEHLLKYEYQPFAGKIKDIAWTEDSK 533
            H+  V+   ++P+G Y+ASG     +R WD +T+  H     ++ +   +  I+W+ D K
Sbjct: 113  HSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCKGHRHW---VLSISWSPDGK 169

Query: 534  RIAVVGEGREKFGAVFLWD--SGSSVGE-ITGHNKVINSVD---IKQSRPYR-LATGSDD 692
            ++A       K G V LWD  +G  VG  +TGH+K I  +    +  +   R +A+ S D
Sbjct: 170  KLA----SGCKNGQVLLWDPSTGLQVGRTLTGHSKWITGLSWEPLHMNPECRYVASSSKD 225

Query: 693  NCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLG 872
                 ++    + +  +  H++ V C+R+  DG  + +AS D  I ++    G    +L 
Sbjct: 226  GSVRVWDTTAGRCERILTGHTQSVTCLRWGGDGLLY-SASQDRTIKVWRAHDGVLCRTLQ 284

Query: 873  GSKAHDGGIYAISWSPDSTHLLSA--SGDKTSKVWDV--NVNSVVNTFTMGSNVLDQQLG 1040
            G   H   +  ++ S D      A    + T    D+  ++  +    +   N++  Q  
Sbjct: 285  G---HGHWVNTMALSTDYALRTGAFEPAEATVNAQDLQGSLKELKERASSRYNLVRGQ-- 339

Query: 1041 CLWQKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDG 1220
                 + L+S S    +         KPL  + GH   I    V  +     + S S D 
Sbjct: 340  ---GPERLVSGSDDFTLFLWSPAEDKKPLARMTGHQALIN--QVLFSPDSRIVASASFDK 394

Query: 1221 HINYWDSETGENDSFAGKGHTNQVSRMTVD-ESGQLVSCSMDDTVRYTSLSLRDYSGQGV 1397
             I  WD  TG+  + + +GH   V ++    +S  LVS S D T++   +  +       
Sbjct: 395  SIKLWDGRTGKYLA-SLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQK------ 447

Query: 1398 VKLEVQPKCVAVGPGGYTVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAV--HPGGETVA 1571
                                                + D PG+  EV AV   P G+ VA
Sbjct: 448  -----------------------------------LATDLPGHADEVYAVDWSPDGQRVA 472

Query: 1572 VGGADGNVRLY 1604
             GG D  +R++
Sbjct: 473  SGGKDKCLRIW 483


>ref|NP_081389.1| WD repeat-containing protein 5B [Mus musculus].
          Length = 328

 Score = 83.2 bits (204), Expect = 8e-16
 Identities = 67/230 (29%), Positives = 111/230 (48%), Gaps = 6/230 (2%)
 Frame = +3

Query: 717  PPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGG 896
            P +  + T+  HS  ++ V+FSP+G   A+++AD  I I+    G    +L G   H   
Sbjct: 27   PNYALRLTLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGNCKKTLYG---HSLE 83

Query: 897  IYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSIS 1076
            I  ++WS DS+ L+SAS DKT KVWD+     + T    S   D    C +     L +S
Sbjct: 84   ISDVAWSSDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHS---DFVFCCDFNPPSNLIVS 140

Query: 1077 LSGYINY-LDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGE 1253
             S   +  + +    K L+ +  HS  I  +  + NG  S I SGS+DG    WD+ +G+
Sbjct: 141  GSFDESVKIWEVKTGKCLKTLSAHSDPISAVNFNCNG--SLIVSGSYDGLCRIWDAASGQ 198

Query: 1254 NDSFAGKGHTNQVSRMTVDESGQ-LVSCSMDDTVRYTSLS----LRDYSG 1388
                        VS +    +G+ +++ ++D+T++    S    L+ Y+G
Sbjct: 199  CLRTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTG 248



 Score = 76.3 bits (186), Expect = 1e-13
 Identities = 57/228 (25%), Positives = 107/228 (46%), Gaps = 7/228 (3%)
 Frame = +3

Query: 357  HAHQVVVAKYAPSGFYIASGDVSGKLRIW---DTTQKEHLLKYEYQPFAGKIKDIAWTED 527
            H+  +   K++P+G ++AS      + IW   D   K+ L  +  +     I D+AW+ D
Sbjct: 38   HSAAISSVKFSPNGEWLASSAADALIIIWGAYDGNCKKTLYGHSLE-----ISDVAWSSD 92

Query: 528  SKRIAVVGEGREKFGAVFLWD--SGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCA 701
            S R+    + +     + +WD  SG  +  + GH+  +   D        + +GS D   
Sbjct: 93   SSRLVSASDDK----TLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNL-IVSGSFDESV 147

Query: 702  AFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSK 881
              +E    K   T+  HS  ++ V F+ +G+   + S DG   I+D  +G+ + +L    
Sbjct: 148  KIWEVKTGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLRTL---- 203

Query: 882  AHDGG--IYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSN 1019
            A +G   +  + +SP+  ++L+A+ D T K+WD +    + T+T   N
Sbjct: 204  ADEGNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKN 251



 Score = 53.5 bits (127), Expect = 7e-07
 Identities = 74/319 (23%), Positives = 130/319 (40%), Gaps = 21/319 (6%)
 Frame = +3

Query: 1104 KNNPSKP---LRV-IKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFAG 1271
            +  P KP   LR+ + GHS +I  +    NG   ++ S + D  I  W +  G N     
Sbjct: 21   EEEPQKPNYALRLTLAGHSAAISSVKFSPNG--EWLASSAADALIIIWGAYDG-NCKKTL 77

Query: 1272 KGHTNQVSRMT-VDESGQLVSCSMDDTVRYTSLS----LRDYSGQG--VVKLEVQPKCVA 1430
             GH+ ++S +    +S +LVS S D T++   +     L+   G    V   +  P    
Sbjct: 78   YGHSLEISDVAWSSDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNL 137

Query: 1431 VGPGGYTVVVCIGQIVLLKDQRKCFSIDNPGYEP-EVVAVHPGGETVAVGGADGNVRLYS 1607
            +  G +   V I ++       KC    +   +P   V  +  G  +  G  DG  R++ 
Sbjct: 138  IVSGSFDESVKIWEV----KTGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWD 193

Query: 1608 ILGS----TLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFY 1775
                    TL DEG       PV+ V +S +G ++        + ++  + G      + 
Sbjct: 194  AASGQCLRTLADEGN-----PPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKT-YT 247

Query: 1776 GHHAKIVCLAWS---PDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLD 1946
            GH  +  CL  S      +   SG  D MVY+W L   E   ++Q  H    +S+     
Sbjct: 248  GHKNEKYCLFASFSVTGRKWVVSGSEDNMVYIWNLQTKEIVQRLQ-GHTDVVISAACHPT 306

Query: 1947 EHTLVTTS--HDASVKEWT 1997
            ++ + + +  +D ++K W+
Sbjct: 307  KNIIASAALENDKTIKVWS 325


>ref|NP_001020546.1| WD repeat-containing protein 61 isoform a [Mus musculus].
          Length = 305

 Score = 81.6 bits (200), Expect = 2e-15
 Identities = 58/199 (29%), Positives = 92/199 (46%)
 Frame = +3

Query: 408  ASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKFGAVFLW 587
            AS  +   +R+WD    + +   +  P       +A++ DS+ +A  G    K   +F  
Sbjct: 80   ASSSLDAHIRLWDLENGKQMKSIDAGPVDAWT--LAFSPDSQYLAT-GTHMGKVN-IFGV 135

Query: 588  DSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVN 767
            +SG     +    K I S+       Y LA+G+ D     F+    K   T+  H+  + 
Sbjct: 136  ESGKKEYSLDTRGKFILSIAYSPDGKY-LASGAIDGIINIFDIATGKLLHTLEGHAMPIR 194

Query: 768  CVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDSTHLLSAS 947
             + FSPD     TAS DG I IYD +      +L G   H   +  +++ PD TH +S+S
Sbjct: 195  SLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG---HASWVLNVAFCPDDTHFVSSS 251

Query: 948  GDKTSKVWDVNVNSVVNTF 1004
             DK+ KVWDV   + ++TF
Sbjct: 252  SDKSVKVWDVGTRTCIHTF 270



 Score = 56.6 bits (135), Expect = 8e-08
 Identities = 35/112 (31%), Positives = 61/112 (54%)
 Frame = +3

Query: 672  LATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTG 851
            LATG+       F     K ++++    +F+  + +SPDG   A+ + DG I I+D  TG
Sbjct: 121  LATGTHMGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 180

Query: 852  EKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFT 1007
            + + +L G   H   I ++++SPDS  L++AS D   K++DV   ++  T +
Sbjct: 181  KLLHTLEG---HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS 229


>ref|NP_075680.1| WD repeat-containing protein 61 isoform a [Mus musculus].
          Length = 305

 Score = 81.6 bits (200), Expect = 2e-15
 Identities = 58/199 (29%), Positives = 92/199 (46%)
 Frame = +3

Query: 408  ASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKFGAVFLW 587
            AS  +   +R+WD    + +   +  P       +A++ DS+ +A  G    K   +F  
Sbjct: 80   ASSSLDAHIRLWDLENGKQMKSIDAGPVDAWT--LAFSPDSQYLAT-GTHMGKVN-IFGV 135

Query: 588  DSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVN 767
            +SG     +    K I S+       Y LA+G+ D     F+    K   T+  H+  + 
Sbjct: 136  ESGKKEYSLDTRGKFILSIAYSPDGKY-LASGAIDGIINIFDIATGKLLHTLEGHAMPIR 194

Query: 768  CVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDSTHLLSAS 947
             + FSPD     TAS DG I IYD +      +L G   H   +  +++ PD TH +S+S
Sbjct: 195  SLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG---HASWVLNVAFCPDDTHFVSSS 251

Query: 948  GDKTSKVWDVNVNSVVNTF 1004
             DK+ KVWDV   + ++TF
Sbjct: 252  SDKSVKVWDVGTRTCIHTF 270



 Score = 56.6 bits (135), Expect = 8e-08
 Identities = 35/112 (31%), Positives = 61/112 (54%)
 Frame = +3

Query: 672  LATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTG 851
            LATG+       F     K ++++    +F+  + +SPDG   A+ + DG I I+D  TG
Sbjct: 121  LATGTHMGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 180

Query: 852  EKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFT 1007
            + + +L G   H   I ++++SPDS  L++AS D   K++DV   ++  T +
Sbjct: 181  KLLHTLEG---HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS 229


>ref|NP_082016.1| POC1 centriolar protein homolog B [Mus musculus].
          Length = 476

 Score = 80.5 bits (197), Expect = 5e-15
 Identities = 72/311 (23%), Positives = 128/311 (41%), Gaps = 6/311 (1%)
 Frame = +3

Query: 321  IDNPAVADIYTEHAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGK 500
            +++P +   +  H   +  A ++P+   IA+      L +W    K H   Y Y      
Sbjct: 5    LEDPILERSFKGHKAAITSADFSPNCKQIATASWDTFLMLWSL--KPHARAYRYVGHKDV 62

Query: 501  IKDIAWTEDSKRIAVVGEGREKFGAVFLW--DSGSSVGEITGHNKVINSVDIKQSRPYRL 674
            +  + ++     +A     R     V LW  D      E   H   + SVD        L
Sbjct: 63   VTSLQFSPQGNLLASASRDR----TVRLWVLDRKGKSSEFKAHTAPVRSVDFSADGQL-L 117

Query: 675  ATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGE 854
             T S+D     +     +F +++  H+ +V C +FSPDG    + S D  I I+D  T  
Sbjct: 118  VTASEDKSIKVWSMFRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWD--TTN 175

Query: 855  KVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTF---TMGSNVL 1025
            K C +       G    + ++P+ T + SA  D   K+WD+ +N ++  +   + G N L
Sbjct: 176  KQC-VNNFSDSVGFANFVDFNPNGTCIASAGSDHAVKIWDIRMNKLLQHYQVHSCGVNCL 234

Query: 1026 D-QQLGCLWQKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIY 1202
                LG     + L++ S  G +  LD     + +  ++GH+  +  ++  K+G    + 
Sbjct: 235  SFHPLG-----NSLVTASSDGTVKMLDLIE-GRLIYTLQGHTGPVFTVSFSKDG--ELLT 286

Query: 1203 SGSHDGHINYW 1235
            SG  D  +  W
Sbjct: 287  SGGADAQVLIW 297



 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 53/208 (25%), Positives = 78/208 (37%)
 Frame = +3

Query: 357 HAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKR 536
           H H V  AK++P G  I S      ++IWDTT K+ +    +    G    + +  +   
Sbjct: 143 HTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCV--NNFSDSVGFANFVDFNPNGTC 200

Query: 537 IAVVGEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEG 716
           IA  G       AV +WD           NK++    +                      
Sbjct: 201 IASAGSDH----AVKIWDIRM--------NKLLQHYQV---------------------- 226

Query: 717 PPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGG 896
                      HS  VNC+ F P GN   TAS+DG + + D   G  + +L G   H G 
Sbjct: 227 -----------HSCGVNCLSFHPLGNSLVTASSDGTVKMLDLIEGRLIYTLQG---HTGP 272

Query: 897 IYAISWSPDSTHLLSASGDKTSKVWDVN 980
           ++ +S+S D   L S   D    +W  N
Sbjct: 273 VFTVSFSKDGELLTSGGADAQVLIWRTN 300



 Score = 51.6 bits (122), Expect = 3e-06
 Identities = 67/293 (22%), Positives = 120/293 (40%), Gaps = 14/293 (4%)
 Frame = +3

Query: 1140 GHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSET-GENDSFAGKGHTNQVSRMTVDES 1316
            GH   +  L     G  + + S S D  +  W  +  G++  F  K HT  V  +     
Sbjct: 58   GHKDVVTSLQFSPQG--NLLASASRDRTVRLWVLDRKGKSSEF--KAHTAPVRSVDFSAD 113

Query: 1317 GQL-VSCSMDDTVRYTSLSLRDYSGQGVVKLEVQPKCVAVGPGGYTVVVCI-GQIVLLKD 1490
            GQL V+ S D +++  S+  R      + +     +C    P G  +V C   + + + D
Sbjct: 114  GQLLVTASEDKSIKVWSM-FRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWD 172

Query: 1491 --QRKCFS--IDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGSTLKDEGKLLEAKG 1658
               ++C +   D+ G+    V  +P G  +A  G+D  V+++ I  + L    ++     
Sbjct: 173  TTNKQCVNNFSDSVGFA-NFVDFNPNGTCIASAGSDHAVKIWDIRMNKLLQHYQVHSCG- 230

Query: 1659 PVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHFASG 1838
             V  +++   G  L    +   V +  + +G     +  GH   +  +++S D E   SG
Sbjct: 231  -VNCLSFHPLGNSLVTASSDGTVKMLDLIEGRLIYTL-QGHTGPVFTVSFSKDGELLTSG 288

Query: 1839 GMDMMVYVWTLS-------DPETRVKIQDAHRLHHVSSLAWLDEHTLVTTSHD 1976
            G D  V +W  +       DP+  +K     RLH  +S   LD +     SH+
Sbjct: 289  GADAQVLIWRTNFIHLHCKDPKRNLK-----RLHFEASPHLLDIYPRSPHSHE 336


>ref|NP_001020547.1| WD repeat-containing protein 61 isoform b [Mus musculus].
          Length = 207

 Score = 75.9 bits (185), Expect = 1e-13
 Identities = 52/165 (31%), Positives = 80/165 (48%)
 Frame = +3

Query: 510  IAWTEDSKRIAVVGEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSD 689
            +A++ DS+ +A  G    K   +F  +SG     +    K I S+       Y LA+G+ 
Sbjct: 14   LAFSPDSQYLAT-GTHMGKVN-IFGVESGKKEYSLDTRGKFILSIAYSPDGKY-LASGAI 70

Query: 690  DNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSL 869
            D     F+    K   T+  H+  +  + FSPD     TAS DG I IYD +      +L
Sbjct: 71   DGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL 130

Query: 870  GGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTF 1004
             G   H   +  +++ PD TH +S+S DK+ KVWDV   + ++TF
Sbjct: 131  SG---HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCIHTF 172



 Score = 56.6 bits (135), Expect = 8e-08
 Identities = 35/112 (31%), Positives = 61/112 (54%)
 Frame = +3

Query: 672  LATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTG 851
            LATG+       F     K ++++    +F+  + +SPDG   A+ + DG I I+D  TG
Sbjct: 23   LATGTHMGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 82

Query: 852  EKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFT 1007
            + + +L G   H   I ++++SPDS  L++AS D   K++DV   ++  T +
Sbjct: 83   KLLHTLEG---HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS 131


>ref|NP_081630.2| POC1 centriolar protein homolog A [Mus musculus].
          Length = 405

 Score = 75.9 bits (185), Expect = 1e-13
 Identities = 66/306 (21%), Positives = 123/306 (40%)
 Frame = +3

Query: 324  DNPAVADIYTEHAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKI 503
            ++P++   +  H   V    ++ +  ++ASG +   L IW    K     Y +      +
Sbjct: 7    EDPSLERHFKGHRDAVTCVDFSLNTKHLASGSMDSTLMIWH--MKPQSRAYRFTGHKDAV 64

Query: 504  KDIAWTEDSKRIAVVGEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATG 683
              + ++     +A     R+K   +++ +          H   + SV    S    L T 
Sbjct: 65   TCVNFSPSGHLLA--SGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFC-SDGQSLVTA 121

Query: 684  SDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVC 863
            SDD     +     +F F++  H  +V C +FSPDG    +AS D  + ++D  + E + 
Sbjct: 122  SDDKTVKVWSTHRQRFLFSLTQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECIH 181

Query: 864  SLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGC 1043
            S      H G +  + + P  T + +A  D T KVWD   + ++  + + S  ++  L  
Sbjct: 182  SY---CEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDARTHRLLQHYQLHSAAVN-ALSF 237

Query: 1044 LWQKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGH 1223
                ++L++ S    +  LD     + L  + GH      +   + G   Y  SG  D  
Sbjct: 238  HPSGNYLITASSDSTLKILDLME-GRLLYTLHGHQGPATTVAFSRTG--EYFASGGSDEQ 294

Query: 1224 INYWDS 1241
            +  W S
Sbjct: 295  VMVWKS 300



 Score = 65.9 bits (159), Expect = 1e-10
 Identities = 75/335 (22%), Positives = 120/335 (35%), Gaps = 6/335 (1%)
 Frame = +3

Query: 879  KAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKD 1058
            K H   +  + +S ++ HL S S D T  +W +   S    FT                 
Sbjct: 16   KGHRDAVTCVDFSLNTKHLASGSMDSTLMIWHMKPQSRAYRFT----------------- 58

Query: 1059 HLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYW- 1235
                                       GH  ++ C+    +G    + SGS D  +  W 
Sbjct: 59   ---------------------------GHKDAVTCVNFSPSG--HLLASGSRDKTVRIWV 89

Query: 1236 DSETGENDSFAGKGHTNQVSRMTVDESGQ-LVSCSMDDTVRYTSLSLRDYSGQGVVKLEV 1412
             +  GE+  F  + HT  V  +     GQ LV+ S D TV+  S   + +       +  
Sbjct: 90   PNVKGESTVF--RAHTATVRSVHFCSDGQSLVTASDDKTVKVWSTHRQRFLFSLTQHIN- 146

Query: 1413 QPKCVAVGPGGYTVVVCIGQIVLL---KDQRKCF-SIDNPGYEPEVVAVHPGGETVAVGG 1580
              +C    P G  +V       +    K  R+C  S    G     V  HP G  +A  G
Sbjct: 147  WVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECIHSYCEHGGFVTYVDFHPSGTCIAAAG 206

Query: 1581 ADGNVRLYSILGSTLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSE 1760
             D  V+++      L    +L  A   V  +++   G +L    +   + +  + +G   
Sbjct: 207  MDNTVKVWDARTHRLLQHYQLHSAA--VNALSFHPSGNYLITASSDSTLKILDLMEGRLL 264

Query: 1761 NNVFYGHHAKIVCLAWSPDNEHFASGGMDMMVYVW 1865
              + +GH      +A+S   E+FASGG D  V VW
Sbjct: 265  YTL-HGHQGPATTVAFSRTGEYFASGGSDEQVMVW 298



 Score = 59.7 bits (143), Expect = 9e-09
 Identities = 59/253 (23%), Positives = 86/253 (33%), Gaps = 38/253 (15%)
 Frame = +3

Query: 348 YTEHAHQVVVAKYAPSGFYIASGDVSGKLRIW-------DTTQKEHLLKYEYQPFAGKIK 506
           +T H   V    ++PSG  +ASG     +RIW        T  + H        F    +
Sbjct: 57  FTGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQ 116

Query: 507 DIAWTEDSKRIAVVGEGREKF-----------------------------GAVFLWDSGS 599
            +    D K + V    R++F                               V LWD  S
Sbjct: 117 SLVTASDDKTVKVWSTHRQRFLFSLTQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTS 176

Query: 600 S--VGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCV 773
              +     H   +  VD   S     A G D N    ++    +       HS  VN +
Sbjct: 177 RECIHSYCEHGGFVTYVDFHPSGTCIAAAGMD-NTVKVWDARTHRLLQHYQLHSAAVNAL 235

Query: 774 RFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGD 953
            F P GN   TAS+D  + I D   G  + +L G   H G    +++S    +  S   D
Sbjct: 236 SFHPSGNYLITASSDSTLKILDLMEGRLLYTLHG---HQGPATTVAFSRTGEYFASGGSD 292

Query: 954 KTSKVWDVNVNSV 992
           +   VW  N + V
Sbjct: 293 EQVMVWKSNFDIV 305


>ref|NP_083963.1| WD repeat-containing protein 38 [Mus musculus].
          Length = 303

 Score = 73.9 bits (180), Expect = 5e-13
 Identities = 60/214 (28%), Positives = 94/214 (43%), Gaps = 11/214 (5%)
 Frame = +3

Query: 744  GDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPD 923
            G H   VNC  FSPDG    TAS DG +Y++  K+G  +  L G   H G + +  +SPD
Sbjct: 23   GQHHGEVNCSAFSPDGRTLLTASDDGCVYVWGTKSGRLLWRLAG---HRGPVKSCCFSPD 79

Query: 924  STHLLSASGDKTSKVWDVNVNSVVNTF--------TMGSNVLDQQLGC-LWQKDHLLSIS 1076
               + S+S D + ++WDV  +  ++          T+  +   +QL    W K  ++   
Sbjct: 80   GRLIASSSSDHSIRLWDVARSKCLHVLKGHQRSVETVSFSPDSKQLASGGWDKRAIVWEV 139

Query: 1077 LSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWD--SETG 1250
             SG           + + ++ GH  SIQ            + +GS D  ++ WD  + T 
Sbjct: 140  QSG-----------RRVHLLVGHCDSIQSSDFSPTSDS--LATGSWDSTVHIWDLRASTP 186

Query: 1251 ENDSFAGKGHTNQVSRMTVDESGQLVSCSMDDTV 1352
                   +GHT  +S +    SG L S S D T+
Sbjct: 187  VVSYHNLEGHTGNISCLCYSASGLLASGSWDKTI 220



 Score = 71.6 bits (174), Expect = 2e-12
 Identities = 65/245 (26%), Positives = 108/245 (44%), Gaps = 5/245 (2%)
 Frame = +3

Query: 357  HAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKE--HLLKYEYQPFAGKIKDIAWTEDS 530
            H   V    ++P G  IAS      +R+WD  + +  H+LK   +     ++ ++++ DS
Sbjct: 67   HRGPVKSCCFSPDGRLIASSSSDHSIRLWDVARSKCLHVLKGHQR----SVETVSFSPDS 122

Query: 531  KRIAVVGEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFF 710
            K++A    G +K   V+   SG  V  + GH   I S D   +    LATGS D+    +
Sbjct: 123  KQLA--SGGWDKRAIVWEVQSGRRVHLLVGHCDSIQSSDFSPTSD-SLATGSWDSTVHIW 179

Query: 711  E---GPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSK 881
            +     P      +  H+  ++C+ +S  G   A+ S D  I ++   T      L   K
Sbjct: 180  DLRASTPVVSYHNLEGHTGNISCLCYSASG-LLASGSWDKTICVWKPTTNNLPLQL---K 235

Query: 882  AHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDH 1061
             H   + ++++SPD   L SA   +T KVWD      + T      +LD    C++  D 
Sbjct: 236  GHTIWVNSLAFSPDELKLASAGYSRTVKVWDCLTGKCLETL---KGMLDVAHACIFTPDG 292

Query: 1062 LLSIS 1076
             L +S
Sbjct: 293  KLLVS 297



 Score = 64.7 bits (156), Expect = 3e-10
 Identities = 54/217 (24%), Positives = 91/217 (41%), Gaps = 2/217 (0%)
 Frame = +3

Query: 348 YTEHAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTED 527
           Y +H  +V  + ++P G  + +    G + +W T  K   L +      G +K   ++ D
Sbjct: 22  YGQHHGEVNCSAFSPDGRTLLTASDDGCVYVWGT--KSGRLLWRLAGHRGPVKSCCFSPD 79

Query: 528 SKRIAVVGEGREKFGAVFLWDSGSS--VGEITGHNKVINSVDIKQSRPYRLATGSDDNCA 701
            + IA          ++ LWD   S  +  + GH + + +V        +LA+G  D  A
Sbjct: 80  GRLIASSSSDH----SIRLWDVARSKCLHVLKGHQRSVETVSFSPDSK-QLASGGWDKRA 134

Query: 702 AFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSK 881
             +E    +    +  H   +    FSP  +  AT S D  ++I+D +    V S    +
Sbjct: 135 IVWEVQSGRRVHLLVGHCDSIQSSDFSPTSDSLATGSWDSTVHIWDLRASTPVVSYHNLE 194

Query: 882 AHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSV 992
            H G I  + +S  S  L S S DKT  VW    N++
Sbjct: 195 GHTGNISCLCYSA-SGLLASGSWDKTICVWKPTTNNL 230



 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 8/161 (4%)
 Frame = +3

Query: 1542 AVHPGGETVAVGGADGNVRLYSILGSTLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASK 1721
            A  P G T+     DG V ++      L    +L   +GPV    +S DG  +A   +  
Sbjct: 33   AFSPDGRTLLTASDDGCVYVWGTKSGRLL--WRLAGHRGPVKSCCFSPDGRLIASSSSDH 90

Query: 1722 VVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHFASGGMDMMVYVWTLSDPETRVKIQ 1901
             + ++ VA     + V  GH   +  +++SPD++  ASGG D    VW         ++Q
Sbjct: 91   SIRLWDVARSKCLH-VLKGHQRSVETVSFSPDSKQLASGGWDKRAIVW---------EVQ 140

Query: 1902 DAHRLH----HVSSLAWLD----EHTLVTTSHDASVKEWTI 2000
               R+H    H  S+   D      +L T S D++V  W +
Sbjct: 141  SGRRVHLLVGHCDSIQSSDFSPTSDSLATGSWDSTVHIWDL 181


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 68,011,970
Number of extensions: 1806434
Number of successful extensions: 9519
Number of sequences better than 1.0e-05: 84
Number of HSP's gapped: 8679
Number of HSP's successfully gapped: 157
Length of query: 734
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 625
Effective length of database: 12,343,635
Effective search space: 7714771875
Effective search space used: 7714771875
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007604
         (2204 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [S...    92   9e-19
Alignment   gi|XP_003358840.1| PREDICTED: WD repeat-containing protein 5B-l...    89   8e-18
Alignment   gi|XP_003358201.1| PREDICTED: notchless protein homolog 1 [Sus ...    87   5e-17
Alignment   gi|XP_001927037.1| PREDICTED: WD repeat-containing protein 61 [...    81   2e-15
Alignment   gi|XP_003353713.1| PREDICTED: WD repeat-containing protein 38-l...    77   4e-14
Alignment   gi|XP_001927805.1| PREDICTED: WD repeat-containing protein 38-l...    77   4e-14
Alignment   gi|XP_003360782.1| PREDICTED: POC1 centriolar protein homolog B...    76   7e-14
Alignment   gi|XP_003132294.2| PREDICTED: POC1 centriolar protein homolog A...    74   3e-13
Alignment   gi|XP_003353667.1| PREDICTED: LOW QUALITY PROTEIN: u4/U6 small ...    72   1e-12
Alignment   gi|XP_003362067.1| PREDICTED: f-box/WD repeat-containing protei...    70   5e-12

>ref|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [Sus scrofa].
          Length = 334

 Score = 92.4 bits (228), Expect = 9e-19
 Identities = 75/234 (32%), Positives = 116/234 (49%), Gaps = 10/234 (4%)
 Frame = +3

Query: 717  PPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYI---YDGKTGEKVCSLGGSKAH 887
            P +  KFT+  H++ V+ V+FSP+G   A++SAD  I I   YDGK  EK  S      H
Sbjct: 33   PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTIS-----GH 86

Query: 888  DGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLW--QKDH 1061
              GI  ++WS DS  L+SAS DKT K+WDV+    + T    SN +     C +  Q + 
Sbjct: 87   KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV---FCCNFNPQSNL 143

Query: 1062 LLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDS 1241
            ++S S    +   D     K L+ +  HS  +    VH N   S I S S+DG    WD+
Sbjct: 144  IVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVS--AVHFNRDGSLIVSSSYDGLCRIWDT 200

Query: 1242 ETGENDSFAGKGHTNQVSRMTVDESGQ-LVSCSMDDTVRYTSLS----LRDYSG 1388
             +G+            VS +    +G+ +++ ++D+T++    S    L+ Y+G
Sbjct: 201  ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 254



 Score = 73.2 bits (178), Expect = 6e-13
 Identities = 73/316 (23%), Positives = 128/316 (40%), Gaps = 4/316 (1%)
 Frame = +3

Query: 357  HAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGK--IKDIAWTEDS 530
            H   V   K++P+G ++AS      ++IW         K+E      K  I D+AW+ DS
Sbjct: 44   HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDS 99

Query: 531  KRIAVVGEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFF 710
                                           N ++++ D K  + + +++G         
Sbjct: 100  -------------------------------NLLVSASDDKTLKIWDVSSG--------- 119

Query: 711  EGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHD 890
                 K   T+  HS +V C  F+P  N   + S D  + I+D KTG+ + +L    AH 
Sbjct: 120  -----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL---PAHS 171

Query: 891  GGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLS 1070
              + A+ ++ D + ++S+S D   ++WD      + T     N     +       ++L+
Sbjct: 172  DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 231

Query: 1071 ISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVH--KNGGKSYIYSGSHDGHINYWDSE 1244
             +L   +   D +   K L+   GH     C+  +    GGK +I SGS D  +  W+ +
Sbjct: 232  ATLDNTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQ 289

Query: 1245 TGENDSFAGKGHTNQV 1292
            T E      +GHT+ V
Sbjct: 290  TKEIVQKL-QGHTDVV 304



 Score = 67.4 bits (163), Expect = 3e-11
 Identities = 63/262 (24%), Positives = 113/262 (43%), Gaps = 6/262 (2%)
 Frame = +3

Query: 612  ITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDG 791
            + GH K ++SV    +  + LA+ S D     +     KF+ TI  H   ++ V +S D 
Sbjct: 41   LAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99

Query: 792  NRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVW 971
            N   +AS D  + I+D  +G+ + +L   K H   ++  +++P S  ++S S D++ ++W
Sbjct: 100  NLLVSASDDKTLKIWDVSSGKCLKTL---KGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156

Query: 972  DVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLS--GYINYLDKNNPSKPLRVIKGH 1145
            DV     + T    S   D      + +D  L +S S  G     D  +      +I   
Sbjct: 157  DVKTGKCLKTLPAHS---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 213

Query: 1146 SKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFAGKGHTNQ----VSRMTVDE 1313
            +  +  +    NG   YI + + D  +  WD   G+       GH N+     +  +V  
Sbjct: 214  NPPVSFVKFSPNG--KYILAATLDNTLKLWDYSKGKCLK-TYTGHKNEKYCIFANFSVTG 270

Query: 1314 SGQLVSCSMDDTVRYTSLSLRD 1379
               +VS S D+ V   +L  ++
Sbjct: 271  GKWIVSGSEDNLVYIWNLQTKE 292



 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 73/316 (23%), Positives = 126/316 (39%), Gaps = 19/316 (6%)
 Frame = +3

Query: 1104 KNNPSKPLRVIK----GHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFAG 1271
            K  P KP   +K    GH+K++  +    NG   ++ S S D  I  W +  G+ +    
Sbjct: 27   KPTPVKPNYALKFTLAGHTKAVSSVKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTIS 84

Query: 1272 KGHTNQVSRMT-VDESGQLVSCSMDDTVRYTSLS----LRDYSGQG--VVKLEVQPKCVA 1430
             GH   +S +    +S  LVS S D T++   +S    L+   G    V      P+   
Sbjct: 85   -GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 143

Query: 1431 VGPGGYTVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVH--PGGETVAVGGADGNVRLY 1604
            +  G +   V I  +       KC     P +   V AVH    G  +     DG  R++
Sbjct: 144  IVSGSFDESVRIWDV----KTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198

Query: 1605 SIL-GSTLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGH 1781
                G  LK    + +   PV+ V +S +G ++        + ++  + G      + GH
Sbjct: 199  DTASGQCLKT--LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGH 255

Query: 1782 HAKIVCLAWS---PDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEH 1952
              +  C+  +      +   SG  D +VY+W L   E   K+Q  H    +S+     E+
Sbjct: 256  KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISTACHPTEN 314

Query: 1953 TLVTTS--HDASVKEW 1994
             + + +  +D ++K W
Sbjct: 315  IIASAALENDKTIKLW 330


>ref|XP_003358840.1| PREDICTED: WD repeat-containing protein 5B-like [Sus scrofa].
          Length = 330

 Score = 89.4 bits (220), Expect = 8e-18
 Identities = 73/235 (31%), Positives = 114/235 (48%), Gaps = 9/235 (3%)
 Frame = +3

Query: 711  EGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYI---YDGKTGEKVCSLGGSK 881
            E P +  KFT+  H+  V+ V+FSP+G   A++SAD  I I   YDGK  + +      K
Sbjct: 27   EKPNYTLKFTLVGHTEAVSSVKFSPNGEWLASSSADKVIIIWGAYDGKYEKAL------K 80

Query: 882  AHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDH 1061
             H   I  ++WS DS  L+SAS DKT K+WDV V   + T    SN +     C +    
Sbjct: 81   GHSLEISDVAWSSDSGRLVSASDDKTLKIWDVRVGKCLKTLKGHSNYV---FCCNFNPPS 137

Query: 1062 LLSISLSGYINY-LDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWD 1238
             L IS S   +  + +    + L+ +  HS  +    VH N   S I SGS+DG    WD
Sbjct: 138  NLIISGSFDESVKIWEVKTGRCLKTLSAHSDPVS--AVHFNCKGSLIVSGSYDGVCRIWD 195

Query: 1239 SETGENDSFAGKGHTNQVSRMTVDESGQ-LVSCSMDDTVRYTSLS----LRDYSG 1388
            + +G+            +S +    +G+ ++  ++D+T++    S    L+ Y+G
Sbjct: 196  AASGQCLKTLVDDDNPPISFVKFSPNGKYILIATLDNTLKLWDYSRGRCLKTYTG 250



 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 55/225 (24%), Positives = 101/225 (44%), Gaps = 4/225 (1%)
 Frame = +3

Query: 357  HAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYE--YQPFAGKIKDIAWTEDS 530
            H   V   K++P+G ++AS      + IW         KYE   +  + +I D+AW+ DS
Sbjct: 40   HTEAVSSVKFSPNGEWLASSSADKVIIIWGAYDG----KYEKALKGHSLEISDVAWSSDS 95

Query: 531  KRIAVVGEGREKFGAVFLWD--SGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAA 704
             R+    + +     + +WD   G  +  + GH+  +   +        + +GS D    
Sbjct: 96   GRLVSASDDK----TLKIWDVRVGKCLKTLKGHSNYVFCCNFNPPSNL-IISGSFDESVK 150

Query: 705  FFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKA 884
             +E    +   T+  HS  V+ V F+  G+   + S DG   I+D  +G+ + +L     
Sbjct: 151  IWEVKTGRCLKTLSAHSDPVSAVHFNCKGSLIVSGSYDGVCRIWDAASGQCLKTLVDD-- 208

Query: 885  HDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSN 1019
             +  I  + +SP+  ++L A+ D T K+WD +    + T+T   N
Sbjct: 209  DNPPISFVKFSPNGKYILIATLDNTLKLWDYSRGRCLKTYTGHKN 253



 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 78/340 (22%), Positives = 140/340 (41%), Gaps = 22/340 (6%)
 Frame = +3

Query: 1053 KDHLLSISLSGYINYLDKNNPSKPLRVIK----GHSKSIQCLTVHKNGGKSYIYSGSHDG 1220
            +D     +LS   N   K    KP   +K    GH++++  +    NG   ++ S S D 
Sbjct: 7    RDDKAGSALSSSANQ-SKQVAEKPNYTLKFTLVGHTEAVSSVKFSPNG--EWLASSSADK 63

Query: 1221 HINYWDSETGENDSFAGKGHTNQVSRMT-VDESGQLVSCSMDDTVRYTSLS----LRDYS 1385
             I  W +  G+ +  A KGH+ ++S +    +SG+LVS S D T++   +     L+   
Sbjct: 64   VIIIWGAYDGKYEK-ALKGHSLEISDVAWSSDSGRLVSASDDKTLKIWDVRVGKCLKTLK 122

Query: 1386 GQG--VVKLEVQPKCVAVGPGGYTVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVHPG- 1556
            G    V      P    +  G +   V I ++       +C    +   +P V AVH   
Sbjct: 123  GHSNYVFCCNFNPPSNLIISGSFDESVKIWEV----KTGRCLKTLSAHSDP-VSAVHFNC 177

Query: 1557 -GETVAVGGADGNVRLYSILGS----TLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASK 1721
             G  +  G  DG  R++         TL D+        P++ V +S +G ++ +     
Sbjct: 178  KGSLIVSGSYDGVCRIWDAASGQCLKTLVDDDN-----PPISFVKFSPNGKYILIATLDN 232

Query: 1722 VVTVFSVADGYSENNVFYGHHAKIVCLAWS---PDNEHFASGGMDMMVYVWTLSDPETRV 1892
             + ++  + G      + GH  +  C+  +      +   SG  D +VY+W L   E   
Sbjct: 233  TLKLWDYSRGRCLKT-YTGHKNEKYCIFANFSVTSGKWIVSGSEDNLVYIWNLQTKEIVQ 291

Query: 1893 KIQDAHRLHHVSSLAWLDEHTLVTTS--HDASVKEWTISY 2006
            K+Q  H    +S+     E+ + + +  +D +VK W  +Y
Sbjct: 292  KLQ-GHTDVVISAACHPTENIIASAALGNDKTVKLWMSNY 330


>ref|XP_003358201.1| PREDICTED: notchless protein homolog 1 [Sus scrofa].
          Length = 485

 Score = 86.7 bits (213), Expect = 5e-17
 Identities = 99/433 (22%), Positives = 168/433 (38%), Gaps = 15/433 (3%)
 Frame = +3

Query: 612  ITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDG 791
            + GH++ + SV    +  Y LA+GS D    F++       FT   H  +V  + +SPDG
Sbjct: 110  LEGHSEAVISVAFSPTGKY-LASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 168

Query: 792  NRFATASADGQIYIYDGKTGEKV-CSLGGSKAHDGGIYAISW-----SPDSTHLLSASGD 953
             + A+   +GQI ++D  TG++V  +L G   H   I A+SW     +P+  ++ S+S D
Sbjct: 169  KKLASGCKNGQILLWDPSTGKQVGRALAG---HSKWITALSWEPLHANPECRYVASSSKD 225

Query: 954  KTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLSGYINYLDKNNPSKPLRV 1133
             + +VWD                                                +  R+
Sbjct: 226  GSVRVWDTTA--------------------------------------------GRCERI 241

Query: 1134 IKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGE-NDSFAGKGH--------TN 1286
            + GH++S+ CL   + GG   +YS S D  I  W +  G    +  G GH        T+
Sbjct: 242  LTGHTQSVTCL---RWGGDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTD 298

Query: 1287 QVSRMTVDESGQLVSCSMDDTVRYTSLSLRDYSGQGVVKLEVQPKCVAVGPGGYTVVVCI 1466
               R    E  +    + D       L  R  S   +V+     + V+ G   +T+ +  
Sbjct: 299  YALRTGAFEPAEASVNAQDLRGSLQELKERALSRYNLVRGRGLERLVS-GSDDFTLFLWS 357

Query: 1467 GQIVLLKDQRKCFSIDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGSTLKDEGKLL 1646
                  +D++    +         V   P    +A    D +++L+   G T K    L 
Sbjct: 358  P----AEDKKPLARMTGHQALINQVLFSPDSRIIASASFDKSIKLWD--GRTGKYLASLR 411

Query: 1647 EAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEH 1826
                 V  +A+S D   L    +   + V+ V       ++  GH  ++  + WSPD + 
Sbjct: 412  GHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLAADL-PGHADEVYAVDWSPDGQR 470

Query: 1827 FASGGMDMMVYVW 1865
             ASGG D  + +W
Sbjct: 471  VASGGKDKCLRIW 483



 Score = 63.5 bits (153), Expect = 5e-10
 Identities = 99/430 (23%), Positives = 169/430 (39%), Gaps = 14/430 (3%)
 Frame = +3

Query: 357  HAHQVVVAKYAPSGFYIASGDVSGKLRIWD-TTQKEHLLKYEYQPFAGKIKDIAWTEDSK 533
            H+  V+   ++P+G Y+ASG     +R WD +T+  H   +  Q     +  I+W+ D K
Sbjct: 113  HSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPH---FTCQGHRHWVLSISWSPDGK 169

Query: 534  RIAVVGEGREKFGAVFLWD--SGSSVGE-ITGHNKVINSVDIK--QSRP--YRLATGSDD 692
            ++A       K G + LWD  +G  VG  + GH+K I ++  +   + P    +A+ S D
Sbjct: 170  KLA----SGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKD 225

Query: 693  NCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLG 872
                 ++    + +  +  H++ V C+R+  DG  + +AS D  I ++    G    +L 
Sbjct: 226  GSVRVWDTTAGRCERILTGHTQSVTCLRWGGDGLLY-SASQDRTIKVWRAHDGVLCRTLQ 284

Query: 873  GSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTF---TMGSNVLDQQLGC 1043
            G   H   +  ++ S D      A     + V   ++   +       +    L +  G 
Sbjct: 285  G---HGHWVNTMALSTDYALRTGAFEPAEASVNAQDLRGSLQELKERALSRYNLVRGRGL 341

Query: 1044 LWQKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGH 1223
                + L+S S    +         KPL  + GH   I    V  +     I S S D  
Sbjct: 342  ----ERLVSGSDDFTLFLWSPAEDKKPLARMTGHQALIN--QVLFSPDSRIIASASFDKS 395

Query: 1224 INYWDSETGENDSFAGKGHTNQVSRMTVD-ESGQLVSCSMDDTVRYTSLSLRDYSGQGVV 1400
            I  WD  TG+  + + +GH   V ++    +S  LVS S D T++   +  +        
Sbjct: 396  IKLWDGRTGKYLA-SLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQK------- 447

Query: 1401 KLEVQPKCVAVGPGGYTVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAV--HPGGETVAV 1574
                                               + D PG+  EV AV   P G+ VA 
Sbjct: 448  ----------------------------------LAADLPGHADEVYAVDWSPDGQRVAS 473

Query: 1575 GGADGNVRLY 1604
            GG D  +R++
Sbjct: 474  GGKDKCLRIW 483


>ref|XP_001927037.1| PREDICTED: WD repeat-containing protein 61 [Sus scrofa].
          Length = 305

 Score = 81.3 bits (199), Expect = 2e-15
 Identities = 59/199 (29%), Positives = 92/199 (46%)
 Frame = +3

Query: 408  ASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKFGAVFLW 587
            AS  +   +R+WD    + +   +  P       +A++ DS+ +A  G    K   +F  
Sbjct: 80   ASSSLDAHIRLWDLENGKQIKSIDAGPVDAWT--LAFSPDSQYLAT-GTHVGKVN-IFGV 135

Query: 588  DSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVN 767
            +SG     +    K I S+       Y LA+G+ D     F+    K   T+  H+  + 
Sbjct: 136  ESGKKEYSLDTRGKFILSIAYSPDGKY-LASGAIDGIINIFDIATGKLLHTLEGHAMPIR 194

Query: 768  CVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDSTHLLSAS 947
             + FSPD     TAS DG I IYD +      +L G   H   +  +++ PD TH +S+S
Sbjct: 195  SLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG---HASWVLNVAFCPDDTHFVSSS 251

Query: 948  GDKTSKVWDVNVNSVVNTF 1004
             DK+ KVWDV   + V+TF
Sbjct: 252  SDKSVKVWDVGTRTCVHTF 270



 Score = 56.6 bits (135), Expect = 6e-08
 Identities = 35/112 (31%), Positives = 61/112 (54%)
 Frame = +3

Query: 672  LATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTG 851
            LATG+       F     K ++++    +F+  + +SPDG   A+ + DG I I+D  TG
Sbjct: 121  LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 180

Query: 852  EKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFT 1007
            + + +L G   H   I ++++SPDS  L++AS D   K++DV   ++  T +
Sbjct: 181  KLLHTLEG---HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS 229



 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 56/246 (22%), Positives = 104/246 (42%), Gaps = 15/246 (6%)
 Frame = +3

Query: 1173 HKNGGKSYIYSGSHDGHINYWDSETGEND-SFAGKGHTNQVSRMTVDESGQL---VSCSM 1340
            +K      + +GS D  +  W     + D  ++ +GH  Q+  ++VD S  L    S S+
Sbjct: 27   NKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGH--QLGVVSVDISHTLPIAASSSL 84

Query: 1341 DDTVRYTSLSLRDYSGQGVVKLEVQPK---CVAVGPGGYTVVVC--IGQIVL--LKDQRK 1499
            D  +R   L     +G+ +  ++  P     +A  P    +     +G++ +  ++  +K
Sbjct: 85   DAHIRLWDLE----NGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 140

Query: 1500 CFSIDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGSTLKDEGKLLEAKG----PVT 1667
             +S+D  G     +A  P G+ +A G  DG + ++ I        GKLL        P+ 
Sbjct: 141  EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIA------TGKLLHTLEGHAMPIR 194

Query: 1668 DVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHFASGGMD 1847
             + +S D   L        + ++ V        +  GH + ++ +A+ PD+ HF S   D
Sbjct: 195  SLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS-GHASWVLNVAFCPDDTHFVSSSSD 253

Query: 1848 MMVYVW 1865
              V VW
Sbjct: 254  KSVKVW 259


>ref|XP_003353713.1| PREDICTED: WD repeat-containing protein 38-like [Sus scrofa].
          Length = 312

 Score = 77.0 bits (188), Expect = 4e-14
 Identities = 69/232 (29%), Positives = 98/232 (42%), Gaps = 3/232 (1%)
 Frame = +3

Query: 669  RLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKT 848
            RL T S+D C   +E    +  + +G H+  V   RFSPDG  FA+ S+D  I ++D   
Sbjct: 35   RLLTASEDGCVYGWETQSGRLLWKLGGHTGPVKFCRFSPDGRLFASTSSDCTIRLWD--- 91

Query: 849  GEKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLD 1028
              KV  L   K H   +  +S+SPDS  L S   DK   +W+V    V+    +G     
Sbjct: 92   VAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLR-HLVGHRDSI 150

Query: 1029 QQLGCLWQKDHLLSISLSGYINYLDKNNPSKPL--RVIKGHSKSIQCLTVHKNGGKSYIY 1202
            Q        D L + S    I   D    +  +  + ++GH  +I CL     G    + 
Sbjct: 151  QSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG---LLA 207

Query: 1203 SGSHDGHINYWDSETGENDSFAGKGHTNQVSRMTVDESG-QLVSCSMDDTVR 1355
            SGS D  I+ W   T  +     KGH   V  +     G QL S     TV+
Sbjct: 208  SGSWDKTIHIWKPST-RSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVK 258



 Score = 76.6 bits (187), Expect = 5e-14
 Identities = 72/248 (29%), Positives = 108/248 (43%), Gaps = 8/248 (3%)
 Frame = +3

Query: 357  HAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAG---KIKDIAWTED 527
            H   V   +++P G   AS      +R+WD  + E L     Q   G    ++ ++++ D
Sbjct: 62   HTGPVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECL-----QVLKGHQRSVETVSFSPD 116

Query: 528  SKRIAVVGEGREKFGAVFLWD--SGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCA 701
            SK++A  G  +     V LW+  SG  +  + GH   I S D   S    LATGS D+  
Sbjct: 117  SKQLASGGWDKR----VMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDC-LATGSWDSTI 171

Query: 702  AFFE---GPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLG 872
              ++   G    F   +  H   ++C+ FS  G   A+ S D  I+I+   T   +  L 
Sbjct: 172  RMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQL- 229

Query: 873  GSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQ 1052
              K H   + +I++SPD   L SA    T KVWD N     +T      VLD    C + 
Sbjct: 230  --KGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTL---KGVLDVAHSCAFT 284

Query: 1053 KDHLLSIS 1076
             D  L +S
Sbjct: 285  PDGKLLVS 292



 Score = 69.7 bits (169), Expect = 6e-12
 Identities = 65/220 (29%), Positives = 89/220 (40%), Gaps = 11/220 (5%)
 Frame = +3

Query: 750  HSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDST 929
            H   VN   FSPDG R  TAS DG +Y ++ ++G  +  LGG   H G +    +SPD  
Sbjct: 20   HRGEVNSSTFSPDGQRLLTASEDGCVYGWETQSGRLLWKLGG---HTGPVKFCRFSPDGR 76

Query: 930  HLLSASGDKTSKVWDVNVNSVVNTF--------TMGSNVLDQQLGC-LWQKDHLLSISLS 1082
               S S D T ++WDV     +           T+  +   +QL    W K  +L    S
Sbjct: 77   LFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQS 136

Query: 1083 GYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDS 1262
            G +           LR + GH  SIQ      +     + +GS D  I  WD   G    
Sbjct: 137  GQV-----------LRHLVGHRDSIQSSDFAPS--SDCLATGSWDSTIRMWDLRGGTGAI 183

Query: 1263 FAG--KGHTNQVSRMTVDESGQLVSCSMDDTVRYTSLSLR 1376
            F    +GH   +S +     G L S S D T+     S R
Sbjct: 184  FHQELEGHRGNISCLCFSAFGLLASGSWDKTIHIWKPSTR 223


>ref|XP_001927805.1| PREDICTED: WD repeat-containing protein 38-like [Sus scrofa].
          Length = 312

 Score = 77.0 bits (188), Expect = 4e-14
 Identities = 69/232 (29%), Positives = 98/232 (42%), Gaps = 3/232 (1%)
 Frame = +3

Query: 669  RLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKT 848
            RL T S+D C   +E    +  + +G H+  V   RFSPDG  FA+ S+D  I ++D   
Sbjct: 35   RLLTASEDGCVYGWETQSGRLLWKLGGHTGPVKFCRFSPDGRLFASTSSDCTIRLWD--- 91

Query: 849  GEKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLD 1028
              KV  L   K H   +  +S+SPDS  L S   DK   +W+V    V+    +G     
Sbjct: 92   VAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLR-HLVGHRDSI 150

Query: 1029 QQLGCLWQKDHLLSISLSGYINYLDKNNPSKPL--RVIKGHSKSIQCLTVHKNGGKSYIY 1202
            Q        D L + S    I   D    +  +  + ++GH  +I CL     G    + 
Sbjct: 151  QSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG---LLA 207

Query: 1203 SGSHDGHINYWDSETGENDSFAGKGHTNQVSRMTVDESG-QLVSCSMDDTVR 1355
            SGS D  I+ W   T  +     KGH   V  +     G QL S     TV+
Sbjct: 208  SGSWDKTIHIWKPST-RSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVK 258



 Score = 76.6 bits (187), Expect = 5e-14
 Identities = 72/248 (29%), Positives = 108/248 (43%), Gaps = 8/248 (3%)
 Frame = +3

Query: 357  HAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAG---KIKDIAWTED 527
            H   V   +++P G   AS      +R+WD  + E L     Q   G    ++ ++++ D
Sbjct: 62   HTGPVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECL-----QVLKGHQRSVETVSFSPD 116

Query: 528  SKRIAVVGEGREKFGAVFLWD--SGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCA 701
            SK++A  G  +     V LW+  SG  +  + GH   I S D   S    LATGS D+  
Sbjct: 117  SKQLASGGWDKR----VMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDC-LATGSWDSTI 171

Query: 702  AFFE---GPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLG 872
              ++   G    F   +  H   ++C+ FS  G   A+ S D  I+I+   T   +  L 
Sbjct: 172  RMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQL- 229

Query: 873  GSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQ 1052
              K H   + +I++SPD   L SA    T KVWD N     +T      VLD    C + 
Sbjct: 230  --KGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTL---KGVLDVAHSCAFT 284

Query: 1053 KDHLLSIS 1076
             D  L +S
Sbjct: 285  PDGKLLVS 292



 Score = 69.7 bits (169), Expect = 6e-12
 Identities = 65/220 (29%), Positives = 89/220 (40%), Gaps = 11/220 (5%)
 Frame = +3

Query: 750  HSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDST 929
            H   VN   FSPDG R  TAS DG +Y ++ ++G  +  LGG   H G +    +SPD  
Sbjct: 20   HRGEVNSSTFSPDGQRLLTASEDGCVYGWETQSGRLLWKLGG---HTGPVKFCRFSPDGR 76

Query: 930  HLLSASGDKTSKVWDVNVNSVVNTF--------TMGSNVLDQQLGC-LWQKDHLLSISLS 1082
               S S D T ++WDV     +           T+  +   +QL    W K  +L    S
Sbjct: 77   LFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQS 136

Query: 1083 GYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDS 1262
            G +           LR + GH  SIQ      +     + +GS D  I  WD   G    
Sbjct: 137  GQV-----------LRHLVGHRDSIQSSDFAPS--SDCLATGSWDSTIRMWDLRGGTGAI 183

Query: 1263 FAG--KGHTNQVSRMTVDESGQLVSCSMDDTVRYTSLSLR 1376
            F    +GH   +S +     G L S S D T+     S R
Sbjct: 184  FHQELEGHRGNISCLCFSAFGLLASGSWDKTIHIWKPSTR 223


>ref|XP_003360782.1| PREDICTED: POC1 centriolar protein homolog B-like, partial [Sus
            scrofa].
          Length = 416

 Score = 76.3 bits (186), Expect = 7e-14
 Identities = 68/281 (24%), Positives = 117/281 (41%), Gaps = 10/281 (3%)
 Frame = +3

Query: 441  WDTTQKEHLLKYEYQPFAGKI-----KDIAWTEDSKRIAVVGEGREKFGAVFLW--DSGS 599
            WDT     L+ + ++P A        KD+  +     +  +     +   V LW  D   
Sbjct: 83   WDT----FLMLWSFKPQARAFRYVGHKDVVTSVQFSPLGNLLASASRDRTVRLWIPDKRG 138

Query: 600  SVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRF 779
               E   H   + SVD      + LAT S+D           +F +++  H+ +V C +F
Sbjct: 139  KSSEFKAHTAPVRSVDFSADGQF-LATASEDKSIXXXXXHRQRFLYSLYRHTHWVRCAKF 197

Query: 780  SPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKT 959
            SPDG    + S D  I I+D  T  K C +       G    + ++P+ T + SA  D T
Sbjct: 198  SPDGRLIVSCSEDKTIKIWD--TTNKQC-VNNFSDFVGFANFVDFNPNGTCIASAGSDHT 254

Query: 960  SKVWDVNVNSVVNTFTMGSNVLDQQLGCLW---QKDHLLSISLSGYINYLDKNNPSKPLR 1130
             K+WD+ VN ++  + + S      + C+      ++L++ S  G +  LD     + + 
Sbjct: 255  VKIWDIRVNKLLQHYQVHSG----GVNCVSFHPSGNYLITASSDGTLKILDLLE-GRLIY 309

Query: 1131 VIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGE 1253
             ++GH+  +   TV  + G     SG  D  +  W +   E
Sbjct: 310  TLQGHTGPV--FTVSFSKGGELFTSGGADAQVLLWRTNFDE 348



 Score = 62.8 bits (151), Expect = 8e-10
 Identities = 54/212 (25%), Positives = 79/212 (37%)
 Frame = +3

Query: 357 HAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKR 536
           H H V  AK++P G  I S      ++IWDTT K+ +    +  F G    + +  +   
Sbjct: 188 HTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCV--NNFSDFVGFANFVDFNPNGTC 245

Query: 537 IAVVGEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEG 716
           IA  G        V +WD    V ++  H +V                            
Sbjct: 246 IASAGSDH----TVKIWD--IRVNKLLQHYQV---------------------------- 271

Query: 717 PPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGG 896
                      HS  VNCV F P GN   TAS+DG + I D   G  + +L G   H G 
Sbjct: 272 -----------HSGGVNCVSFHPSGNYLITASSDGTLKILDLLEGRLIYTLQG---HTGP 317

Query: 897 IYAISWSPDSTHLLSASGDKTSKVWDVNVNSV 992
           ++ +S+S       S   D    +W  N + +
Sbjct: 318 VFTVSFSKGGELFTSGGADAQVLLWRTNFDEL 349



 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 58/271 (21%), Positives = 107/271 (39%), Gaps = 9/271 (3%)
 Frame = +3

Query: 1203 SGSHDGHINYW-DSETGENDSFAGKGHTNQVSRMTVDESGQLVSCSMDDTVRYTSLSLRD 1379
            S S D  +  W   + G++  F  K HT  V  +     GQ ++ + +D         R 
Sbjct: 122  SASRDRTVRLWIPDKRGKSSEF--KAHTAPVRSVDFSADGQFLATASEDKSIXXXXXHRQ 179

Query: 1380 YSGQGVVKLEVQPKCVAVGPGGYTVVVCI-GQIVLLKD--QRKCFS--IDNPGYEPEVVA 1544
                 + +     +C    P G  +V C   + + + D   ++C +   D  G+    V 
Sbjct: 180  RFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDFVGFA-NFVD 238

Query: 1545 VHPGGETVAVGGADGNVRLYSILGSTLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASKV 1724
             +P G  +A  G+D  V+++ I  + L    ++    G V  V++   G +L    +   
Sbjct: 239  FNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQV--HSGGVNCVSFHPSGNYLITASSDGT 296

Query: 1725 VTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHFASGGMDMMVYVWTLSDPETRVK--- 1895
            + +  + +G     +  GH   +  +++S   E F SGG D  V +W  +  E   K   
Sbjct: 297  LKILDLLEGRLIYTL-QGHTGPVFTVSFSKGGELFTSGGADAQVLLWRTNFDELNCKDVI 355

Query: 1896 IQDAHRLHHVSSLAWLDEHTLVTTSHDASVK 1988
             ++  RLH  S    LD +      H+   +
Sbjct: 356  KRNLKRLHFDSPPHLLDIYPRTPHPHEGKTE 386


>ref|XP_003132294.2| PREDICTED: POC1 centriolar protein homolog A-like [Sus scrofa].
          Length = 344

 Score = 74.3 bits (181), Expect = 3e-13
 Identities = 76/339 (22%), Positives = 132/339 (38%), Gaps = 3/339 (0%)
 Frame = +3

Query: 324  DNPAVADIYTEHAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKI 503
            ++P++   +  H   V    ++ +   +ASG +   L +W    K     Y +      +
Sbjct: 7    EDPSLERHFKGHRDAVTCVDFSFNMKQLASGSMDSCLMVWH--MKPQSRAYRFTGHKDAV 64

Query: 504  KDIAWTEDSKRIAVVGEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATG 683
              + ++     +A     R+K   +++ +          H   + SV    S      T 
Sbjct: 65   TCVNFSPSGHLLA--SGSRDKTVRIWVPNIKGESTVFRAHTATVRSVHFC-SDGQSFVTA 121

Query: 684  SDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVC 863
            SDD     +     KF F++  H  +V C +FSPDG    +AS D  + ++D  + E V 
Sbjct: 122  SDDKTIKVWSTHRQKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVH 181

Query: 864  SLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGC 1043
            S      H G +  + + P  T + +A  D T KVWDV  + ++  + + S  ++  L  
Sbjct: 182  SY---CEHGGFVTYVDFHPSGTCVAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVN-ALSF 237

Query: 1044 LWQKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGH 1223
                ++L++ S    +  LD     + L  + GH      +   + G   Y  SG  D  
Sbjct: 238  HPSGNYLVTASSDSTLKILDLME-GRLLYTLHGHQGPATTVAFSRTG--EYFASGGSDEQ 294

Query: 1224 INYWDSETGENDSFAGKGHTNQVSR---MTVDESGQLVS 1331
            +  W S    N      G   +V R        SG LVS
Sbjct: 295  VMVWKS----NFDVIDYGEVLRVQRPPATLASSSGTLVS 329



 Score = 64.3 bits (155), Expect = 3e-10
 Identities = 55/234 (23%), Positives = 93/234 (39%), Gaps = 9/234 (3%)
 Frame = +3

Query: 303 CVILRNIDNPAVADIYTEHAHQVVVAKYAPSGFYIASGDVSGKLRIW-------DTTQKE 461
           C+++ ++   + A  +T H   V    ++PSG  +ASG     +RIW        T  + 
Sbjct: 42  CLMVWHMKPQSRAYRFTGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNIKGESTVFRA 101

Query: 462 HLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKFGAVFLWDSGSSVGEITGHNKVINS 641
           H        F    +      D K I V    R+KF              +   ++ IN 
Sbjct: 102 HTATVRSVHFCSDGQSFVTASDDKTIKVWSTHRQKF--------------LFSLSQHINW 147

Query: 642 VDIKQSRP--YRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASA 815
           V   +  P    + + SDD     ++    +   +  +H  FV  V F P G   A A  
Sbjct: 148 VRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEHGGFVTYVDFHPSGTCVAAAGM 207

Query: 816 DGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDV 977
           D  + ++D +T      L   + H   + A+S+ P   +L++AS D T K+ D+
Sbjct: 208 DNTVKVWDVRTHR---LLQHYQLHSAAVNALSFHPSGNYLVTASSDSTLKILDL 258



 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 61/248 (24%), Positives = 100/248 (40%), Gaps = 6/248 (2%)
 Frame = +3

Query: 1140 GHSKSIQCLTVHKNGGKSYIYSGSHDGHINYW-DSETGENDSFAGKGHTNQVSRMTVDES 1316
            GH  ++ C+    +G    + SGS D  +  W  +  GE+  F  + HT  V  +     
Sbjct: 59   GHKDAVTCVNFSPSG--HLLASGSRDKTVRIWVPNIKGESTVF--RAHTATVRSVHFCSD 114

Query: 1317 GQ-LVSCSMDDTVRYTSLSLRDYSGQGVVKLEVQPKCVAVGPGGYTVVVCIGQIVLL--- 1484
            GQ  V+ S D T++  S   + +       +    +C    P G  +V       +    
Sbjct: 115  GQSFVTASDDKTIKVWSTHRQKFLFSLSQHIN-WVRCAKFSPDGRLIVSASDDKTVKLWD 173

Query: 1485 KDQRKCF-SIDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGSTLKDEGKLLEAKGP 1661
            K  R+C  S    G     V  HP G  VA  G D  V+++ +    L    +L  A   
Sbjct: 174  KTSRECVHSYCEHGGFVTYVDFHPSGTCVAAAGMDNTVKVWDVRTHRLLQHYQLHSAA-- 231

Query: 1662 VTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHFASGG 1841
            V  +++   G +L    +   + +  + +G     + +GH      +A+S   E+FASGG
Sbjct: 232  VNALSFHPSGNYLVTASSDSTLKILDLMEGRLLYTL-HGHQGPATTVAFSRTGEYFASGG 290

Query: 1842 MDMMVYVW 1865
             D  V VW
Sbjct: 291  SDEQVMVW 298


>ref|XP_003353667.1| PREDICTED: LOW QUALITY PROTEIN: u4/U6 small nuclear
           ribonucleoprotein Prp4-like [Sus scrofa].
          Length = 506

 Score = 72.0 bits (175), Expect = 1e-12
 Identities = 64/219 (29%), Positives = 101/219 (46%), Gaps = 3/219 (1%)
 Frame = +3

Query: 324 DNPAVADIYTEHAHQVVVAK--YAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAG 497
           D P VADI     H V VA+  + PSG ++ +       R+WD   +E +L  E      
Sbjct: 297 DEP-VADI---EGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMG- 351

Query: 498 KIKDIAWTEDSKRIAVVGEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLA 677
            + DIA+ +D   +A  G G + FG V+   +G  +  + GH K I  ++   +  Y +A
Sbjct: 352 -VYDIAFHQDGS-LAGTG-GLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPN-GYHIA 407

Query: 678 TGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSP-DGNRFATASADGQIYIYDGKTGE 854
           TGS DN    ++    +  +TI  H   V  V+F P  GN   T + D    I+      
Sbjct: 408 TGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTHPGWS 467

Query: 855 KVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVW 971
            + +L G   H+G +  +  S D   + + S D+T K+W
Sbjct: 468 PLKTLAG---HEGKVMGLDISSDGQLIATCSYDRTFKLW 503



 Score = 59.3 bits (142), Expect = 9e-09
 Identities = 47/167 (28%), Positives = 73/167 (43%), Gaps = 2/167 (1%)
 Frame = +3

Query: 750  HSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDST 929
            HS  V  + F  DG+   T   D    ++D +TG  +  L G   H   IY I++SP+  
Sbjct: 348  HSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEG---HLKEIYGINFSPNGY 404

Query: 930  HLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLSGYINYLD-K 1106
            H+ + SGD T KVWD+     V T     N++    G  ++  H   +    Y N     
Sbjct: 405  HIATGSGDNTCKVWDLRQRRCVYTIPAHQNLV---TGVKFEPIHGNFLLTGAYDNTAKIW 461

Query: 1107 NNPS-KPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSE 1244
             +P   PL+ + GH   +  L +  +G    I + S+D     W +E
Sbjct: 462  THPGWSPLKTLAGHEGKVMGLDISSDG--QLIATCSYDRTFKLWMAE 506


>ref|XP_003362067.1| PREDICTED: f-box/WD repeat-containing protein 7 isoform 3 [Sus
            scrofa].
          Length = 589

 Score = 70.1 bits (170), Expect = 5e-12
 Identities = 59/284 (20%), Positives = 125/284 (44%), Gaps = 3/284 (1%)
 Frame = +3

Query: 411  SGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKFGAVFLWD 590
            SG     L++W     + L     +   G    + W+   +   ++    ++   V+  +
Sbjct: 278  SGSDDNTLKVWSAVTGKCL-----RTLVGHTGGV-WSSQMRDNIIISGSTDRTLKVWNAE 331

Query: 591  SGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNC 770
            +G  +  + GH   +  + + + R   + +GS D     ++    +    +  H   V C
Sbjct: 332  TGECIHTLYGHTSTVRCMHLHEKR---VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC 388

Query: 771  VRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDSTHLLSASG 950
            V++  DG R  + + D  + ++D +T   + +L G   H   +Y++ +  D  H++S S 
Sbjct: 389  VQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQG---HTNRVYSLQF--DGIHVVSGSL 441

Query: 951  DKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLSGYINYLDKNNPSKPLR 1130
            D + +VWDV   + ++T T   ++     G   + + L+S +    +   D     + L+
Sbjct: 442  DTSIRVWDVETGNCIHTLTGHQSLTS---GMELKDNILVSGNADSTVKIWDIKT-GQCLQ 497

Query: 1131 VIKG---HSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGE 1253
             ++G   H  ++ CL  +KN    ++ + S DG +  WD +TGE
Sbjct: 498  TLQGPNKHQSAVTCLQFNKN----FVITSSDDGTVKLWDLKTGE 537


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 51,465,927
Number of extensions: 1454955
Number of successful extensions: 7464
Number of sequences better than 1.0e-05: 64
Number of HSP's gapped: 6916
Number of HSP's successfully gapped: 123
Length of query: 734
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 628
Effective length of database: 8,704,850
Effective search space: 5466645800
Effective search space used: 5466645800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007604
         (2204 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_059830.1| WD repeat-containing protein 1 isoform 1 [Homo ...  1223   0.0  
Alignment   gi|NP_005103.2| WD repeat-containing protein 1 isoform 2 [Homo ...   846   0.0  
Alignment   gi|NP_438172.1| WD repeat-containing protein 5 [Homo sapiens].        92   2e-18
Alignment   gi|NP_060058.1| WD repeat-containing protein 5 [Homo sapiens].        92   2e-18
Alignment   gi|NP_061942.2| WD repeat-containing protein 5B [Homo sapiens].       88   4e-17
Alignment   gi|NP_758440.1| POC1 centriolar protein homolog B isoform a [Ho...    87   5e-17
Alignment   gi|NP_060566.2| notchless protein homolog 1 isoform a [Homo sap...    86   1e-16
Alignment   gi|NP_079510.1| WD repeat-containing protein 61 [Homo sapiens].       81   4e-15
Alignment   gi|NP_001186706.1| POC1 centriolar protein homolog B isoform b ...    79   1e-14
Alignment   gi|NP_849143.1| WD repeat-containing protein 69 [Homo sapiens].       78   3e-14

>ref|NP_059830.1| WD repeat-containing protein 1 isoform 1 [Homo sapiens].
          Length = 606

 Score = 1223 bits (3165), Expect = 0.0
 Identities = 587/606 (96%), Positives = 600/606 (99%)
 Frame = +3

Query: 189  MPYEIKKVFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVILRNIDNPAVADIYTEHAHQ 368
            MPYEIKKVFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVILRNIDNPA+ADIYTEHAHQ
Sbjct: 1    MPYEIKKVFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVILRNIDNPALADIYTEHAHQ 60

Query: 369  VVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV 548
            VVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV
Sbjct: 61   VVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV 120

Query: 549  GEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFK 728
            GEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFK
Sbjct: 121  GEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFK 180

Query: 729  FKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAI 908
            FKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVC+LGGSKAHDGGIYAI
Sbjct: 181  FKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCALGGSKAHDGGIYAI 240

Query: 909  SWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLSGY 1088
            SWSPDSTHLLSASGDKTSK+WDV+VNSVV+TF MGS VLDQQLGCLWQKDHLLS+SLSGY
Sbjct: 241  SWSPDSTHLLSASGDKTSKIWDVSVNSVVSTFPMGSTVLDQQLGCLWQKDHLLSVSLSGY 300

Query: 1089 INYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFA 1268
            INYLD+NNPSKPL VIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFA
Sbjct: 301  INYLDRNNPSKPLHVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFA 360

Query: 1269 GKGHTNQVSRMTVDESGQLVSCSMDDTVRYTSLSLRDYSGQGVVKLEVQPKCVAVGPGGY 1448
            GKGHTNQVSRMTVDESGQL+SCSMDDTVRYTSL LRDYSGQGVVKL+VQPKCVAVGPGGY
Sbjct: 361  GKGHTNQVSRMTVDESGQLISCSMDDTVRYTSLMLRDYSGQGVVKLDVQPKCVAVGPGGY 420

Query: 1449 TVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGSTLK 1628
             VVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVHPGG+TVA+GG DGNVRLYSILG+TLK
Sbjct: 421  AVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVHPGGDTVAIGGVDGNVRLYSILGTTLK 480

Query: 1629 DEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAW 1808
            DEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAW
Sbjct: 481  DEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAW 540

Query: 1809 SPDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVK 1988
            SPDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVK
Sbjct: 541  SPDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVK 600

Query: 1989 EWTISY 2006
            EWTI+Y
Sbjct: 601  EWTITY 606


>ref|NP_005103.2| WD repeat-containing protein 1 isoform 2 [Homo sapiens].
          Length = 466

 Score =  846 bits (2185), Expect = 0.0
 Identities = 403/422 (95%), Positives = 415/422 (98%)
 Frame = +3

Query: 741  IGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSP 920
            I DHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVC+LGGSKAHDGGIYAISWSP
Sbjct: 45   IDDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCALGGSKAHDGGIYAISWSP 104

Query: 921  DSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLSGYINYL 1100
            DSTHLLSASGDKTSK+WDV+VNSVV+TF MGS VLDQQLGCLWQKDHLLS+SLSGYINYL
Sbjct: 105  DSTHLLSASGDKTSKIWDVSVNSVVSTFPMGSTVLDQQLGCLWQKDHLLSVSLSGYINYL 164

Query: 1101 DKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFAGKGH 1280
            D+NNPSKPL VIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFAGKGH
Sbjct: 165  DRNNPSKPLHVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFAGKGH 224

Query: 1281 TNQVSRMTVDESGQLVSCSMDDTVRYTSLSLRDYSGQGVVKLEVQPKCVAVGPGGYTVVV 1460
            TNQVSRMTVDESGQL+SCSMDDTVRYTSL LRDYSGQGVVKL+VQPKCVAVGPGGY VVV
Sbjct: 225  TNQVSRMTVDESGQLISCSMDDTVRYTSLMLRDYSGQGVVKLDVQPKCVAVGPGGYAVVV 284

Query: 1461 CIGQIVLLKDQRKCFSIDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGSTLKDEGK 1640
            CIGQIVLLKDQRKCFSIDNPGYEPEVVAVHPGG+TVA+GG DGNVRLYSILG+TLKDEGK
Sbjct: 285  CIGQIVLLKDQRKCFSIDNPGYEPEVVAVHPGGDTVAIGGVDGNVRLYSILGTTLKDEGK 344

Query: 1641 LLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDN 1820
            LLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDN
Sbjct: 345  LLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDN 404

Query: 1821 EHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVKEWTI 2000
            EHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVKEWTI
Sbjct: 405  EHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVKEWTI 464

Query: 2001 SY 2006
            +Y
Sbjct: 465  TY 466



 Score =  124 bits (311), Expect = 4e-28
 Identities = 94/264 (35%), Positives = 130/264 (49%), Gaps = 7/264 (2%)
 Frame = +3

Query: 189 MPYEIKKVFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVILRNIDNPAVADIYTEHAHQ 368
           MPYEIKKVFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVILRNID         +H+  
Sbjct: 1   MPYEIKKVFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVILRNID---------DHSRF 51

Query: 369 VVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKY-EYQPFAGKIKDIAWTEDSKR-IA 542
           V   +++P G   A+    G++ I+D    E +      +   G I  I+W+ DS   ++
Sbjct: 52  VNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCALGGSKAHDGGIYAISWSPDSTHLLS 111

Query: 543 VVGEGREKFGAVFLWD-SGSSVGEI--TGHNKVINSVDIKQSRPYRLATGSDDNCAAFFE 713
             G+   K     +WD S +SV      G   +   +     + + L+            
Sbjct: 112 ASGDKTSK-----IWDVSVNSVVSTFPMGSTVLDQQLGCLWQKDHLLSVSLSGYINYLDR 166

Query: 714 GPPFKFKFTIGDHSRFVNCVRFSPDGNR--FATASADGQIYIYDGKTGEKVCSLGGSKAH 887
             P K    I  HS+ + C+    +G +    + S DG I  +D +TGE     G  K H
Sbjct: 167 NNPSKPLHVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFAG--KGH 224

Query: 888 DGGIYAISWSPDSTHLLSASGDKT 959
              +  ++   +S  L+S S D T
Sbjct: 225 TNQVSRMT-VDESGQLISCSMDDT 247


>ref|NP_438172.1| WD repeat-containing protein 5 [Homo sapiens].
          Length = 334

 Score = 92.4 bits (228), Expect = 2e-18
 Identities = 75/234 (32%), Positives = 116/234 (49%), Gaps = 10/234 (4%)
 Frame = +3

Query: 717  PPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYI---YDGKTGEKVCSLGGSKAH 887
            P +  KFT+  H++ V+ V+FSP+G   A++SAD  I I   YDGK  EK  S      H
Sbjct: 33   PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTIS-----GH 86

Query: 888  DGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLW--QKDH 1061
              GI  ++WS DS  L+SAS DKT K+WDV+    + T    SN +     C +  Q + 
Sbjct: 87   KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV---FCCNFNPQSNL 143

Query: 1062 LLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDS 1241
            ++S S    +   D     K L+ +  HS  +    VH N   S I S S+DG    WD+
Sbjct: 144  IVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVS--AVHFNRDGSLIVSSSYDGLCRIWDT 200

Query: 1242 ETGENDSFAGKGHTNQVSRMTVDESGQ-LVSCSMDDTVRYTSLS----LRDYSG 1388
             +G+            VS +    +G+ +++ ++D+T++    S    L+ Y+G
Sbjct: 201  ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 254



 Score = 73.2 bits (178), Expect = 1e-12
 Identities = 73/316 (23%), Positives = 128/316 (40%), Gaps = 4/316 (1%)
 Frame = +3

Query: 357  HAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGK--IKDIAWTEDS 530
            H   V   K++P+G ++AS      ++IW         K+E      K  I D+AW+ DS
Sbjct: 44   HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDS 99

Query: 531  KRIAVVGEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFF 710
                                           N ++++ D K  + + +++G         
Sbjct: 100  -------------------------------NLLVSASDDKTLKIWDVSSG--------- 119

Query: 711  EGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHD 890
                 K   T+  HS +V C  F+P  N   + S D  + I+D KTG+ + +L    AH 
Sbjct: 120  -----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL---PAHS 171

Query: 891  GGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLS 1070
              + A+ ++ D + ++S+S D   ++WD      + T     N     +       ++L+
Sbjct: 172  DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 231

Query: 1071 ISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVH--KNGGKSYIYSGSHDGHINYWDSE 1244
             +L   +   D +   K L+   GH     C+  +    GGK +I SGS D  +  W+ +
Sbjct: 232  ATLDNTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQ 289

Query: 1245 TGENDSFAGKGHTNQV 1292
            T E      +GHT+ V
Sbjct: 290  TKEIVQKL-QGHTDVV 304



 Score = 67.4 bits (163), Expect = 5e-11
 Identities = 63/262 (24%), Positives = 113/262 (43%), Gaps = 6/262 (2%)
 Frame = +3

Query: 612  ITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDG 791
            + GH K ++SV    +  + LA+ S D     +     KF+ TI  H   ++ V +S D 
Sbjct: 41   LAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99

Query: 792  NRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVW 971
            N   +AS D  + I+D  +G+ + +L   K H   ++  +++P S  ++S S D++ ++W
Sbjct: 100  NLLVSASDDKTLKIWDVSSGKCLKTL---KGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156

Query: 972  DVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLS--GYINYLDKNNPSKPLRVIKGH 1145
            DV     + T    S   D      + +D  L +S S  G     D  +      +I   
Sbjct: 157  DVKTGKCLKTLPAHS---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 213

Query: 1146 SKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFAGKGHTNQ----VSRMTVDE 1313
            +  +  +    NG   YI + + D  +  WD   G+       GH N+     +  +V  
Sbjct: 214  NPPVSFVKFSPNG--KYILAATLDNTLKLWDYSKGKCLK-TYTGHKNEKYCIFANFSVTG 270

Query: 1314 SGQLVSCSMDDTVRYTSLSLRD 1379
               +VS S D+ V   +L  ++
Sbjct: 271  GKWIVSGSEDNLVYIWNLQTKE 292



 Score = 50.8 bits (120), Expect = 5e-06
 Identities = 73/316 (23%), Positives = 126/316 (39%), Gaps = 19/316 (6%)
 Frame = +3

Query: 1104 KNNPSKPLRVIK----GHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFAG 1271
            K  P KP   +K    GH+K++  +    NG   ++ S S D  I  W +  G+ +    
Sbjct: 27   KPTPVKPNYALKFTLAGHTKAVSSVKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTIS 84

Query: 1272 KGHTNQVSRMT-VDESGQLVSCSMDDTVRYTSLS----LRDYSGQG--VVKLEVQPKCVA 1430
             GH   +S +    +S  LVS S D T++   +S    L+   G    V      P+   
Sbjct: 85   -GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 143

Query: 1431 VGPGGYTVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVH--PGGETVAVGGADGNVRLY 1604
            +  G +   V I  +       KC     P +   V AVH    G  +     DG  R++
Sbjct: 144  IVSGSFDESVRIWDV----KTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198

Query: 1605 SIL-GSTLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGH 1781
                G  LK    + +   PV+ V +S +G ++        + ++  + G      + GH
Sbjct: 199  DTASGQCLKT--LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGH 255

Query: 1782 HAKIVCLAWS---PDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEH 1952
              +  C+  +      +   SG  D +VY+W L   E   K+Q  H    +S+     E+
Sbjct: 256  KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISTACHPTEN 314

Query: 1953 TLVTTS--HDASVKEW 1994
             + + +  +D ++K W
Sbjct: 315  IIASAALENDKTIKLW 330


>ref|NP_060058.1| WD repeat-containing protein 5 [Homo sapiens].
          Length = 334

 Score = 92.4 bits (228), Expect = 2e-18
 Identities = 75/234 (32%), Positives = 116/234 (49%), Gaps = 10/234 (4%)
 Frame = +3

Query: 717  PPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYI---YDGKTGEKVCSLGGSKAH 887
            P +  KFT+  H++ V+ V+FSP+G   A++SAD  I I   YDGK  EK  S      H
Sbjct: 33   PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTIS-----GH 86

Query: 888  DGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLW--QKDH 1061
              GI  ++WS DS  L+SAS DKT K+WDV+    + T    SN +     C +  Q + 
Sbjct: 87   KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV---FCCNFNPQSNL 143

Query: 1062 LLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDS 1241
            ++S S    +   D     K L+ +  HS  +    VH N   S I S S+DG    WD+
Sbjct: 144  IVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVS--AVHFNRDGSLIVSSSYDGLCRIWDT 200

Query: 1242 ETGENDSFAGKGHTNQVSRMTVDESGQ-LVSCSMDDTVRYTSLS----LRDYSG 1388
             +G+            VS +    +G+ +++ ++D+T++    S    L+ Y+G
Sbjct: 201  ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 254



 Score = 73.2 bits (178), Expect = 1e-12
 Identities = 73/316 (23%), Positives = 128/316 (40%), Gaps = 4/316 (1%)
 Frame = +3

Query: 357  HAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGK--IKDIAWTEDS 530
            H   V   K++P+G ++AS      ++IW         K+E      K  I D+AW+ DS
Sbjct: 44   HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDS 99

Query: 531  KRIAVVGEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFF 710
                                           N ++++ D K  + + +++G         
Sbjct: 100  -------------------------------NLLVSASDDKTLKIWDVSSG--------- 119

Query: 711  EGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHD 890
                 K   T+  HS +V C  F+P  N   + S D  + I+D KTG+ + +L    AH 
Sbjct: 120  -----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL---PAHS 171

Query: 891  GGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLS 1070
              + A+ ++ D + ++S+S D   ++WD      + T     N     +       ++L+
Sbjct: 172  DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 231

Query: 1071 ISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVH--KNGGKSYIYSGSHDGHINYWDSE 1244
             +L   +   D +   K L+   GH     C+  +    GGK +I SGS D  +  W+ +
Sbjct: 232  ATLDNTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQ 289

Query: 1245 TGENDSFAGKGHTNQV 1292
            T E      +GHT+ V
Sbjct: 290  TKEIVQKL-QGHTDVV 304



 Score = 67.4 bits (163), Expect = 5e-11
 Identities = 63/262 (24%), Positives = 113/262 (43%), Gaps = 6/262 (2%)
 Frame = +3

Query: 612  ITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDG 791
            + GH K ++SV    +  + LA+ S D     +     KF+ TI  H   ++ V +S D 
Sbjct: 41   LAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99

Query: 792  NRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVW 971
            N   +AS D  + I+D  +G+ + +L   K H   ++  +++P S  ++S S D++ ++W
Sbjct: 100  NLLVSASDDKTLKIWDVSSGKCLKTL---KGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156

Query: 972  DVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLS--GYINYLDKNNPSKPLRVIKGH 1145
            DV     + T    S   D      + +D  L +S S  G     D  +      +I   
Sbjct: 157  DVKTGKCLKTLPAHS---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 213

Query: 1146 SKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFAGKGHTNQ----VSRMTVDE 1313
            +  +  +    NG   YI + + D  +  WD   G+       GH N+     +  +V  
Sbjct: 214  NPPVSFVKFSPNG--KYILAATLDNTLKLWDYSKGKCLK-TYTGHKNEKYCIFANFSVTG 270

Query: 1314 SGQLVSCSMDDTVRYTSLSLRD 1379
               +VS S D+ V   +L  ++
Sbjct: 271  GKWIVSGSEDNLVYIWNLQTKE 292



 Score = 50.8 bits (120), Expect = 5e-06
 Identities = 73/316 (23%), Positives = 126/316 (39%), Gaps = 19/316 (6%)
 Frame = +3

Query: 1104 KNNPSKPLRVIK----GHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFAG 1271
            K  P KP   +K    GH+K++  +    NG   ++ S S D  I  W +  G+ +    
Sbjct: 27   KPTPVKPNYALKFTLAGHTKAVSSVKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTIS 84

Query: 1272 KGHTNQVSRMT-VDESGQLVSCSMDDTVRYTSLS----LRDYSGQG--VVKLEVQPKCVA 1430
             GH   +S +    +S  LVS S D T++   +S    L+   G    V      P+   
Sbjct: 85   -GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 143

Query: 1431 VGPGGYTVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVH--PGGETVAVGGADGNVRLY 1604
            +  G +   V I  +       KC     P +   V AVH    G  +     DG  R++
Sbjct: 144  IVSGSFDESVRIWDV----KTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198

Query: 1605 SIL-GSTLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGH 1781
                G  LK    + +   PV+ V +S +G ++        + ++  + G      + GH
Sbjct: 199  DTASGQCLKT--LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGH 255

Query: 1782 HAKIVCLAWS---PDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEH 1952
              +  C+  +      +   SG  D +VY+W L   E   K+Q  H    +S+     E+
Sbjct: 256  KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISTACHPTEN 314

Query: 1953 TLVTTS--HDASVKEW 1994
             + + +  +D ++K W
Sbjct: 315  IIASAALENDKTIKLW 330


>ref|NP_061942.2| WD repeat-containing protein 5B [Homo sapiens].
          Length = 330

 Score = 87.8 bits (216), Expect = 4e-17
 Identities = 71/232 (30%), Positives = 113/232 (48%), Gaps = 6/232 (2%)
 Frame = +3

Query: 711  EGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHD 890
            E P +  K T+  H+  V+ V+FSP+G   A++SAD  I I+    G+   +L G   H+
Sbjct: 27   ENPNYALKCTLVGHTEAVSSVKFSPNGEWLASSSADRLIIIWGAYDGKYEKTLYG---HN 83

Query: 891  GGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLS 1070
              I  ++WS DS+ L+SAS DKT K+WDV     + T    SN +     C +     L 
Sbjct: 84   LEISDVAWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSNYV---FCCNFNPPSNLI 140

Query: 1071 ISLS-GYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSET 1247
            IS S      + +    K L+ +  HS  +    VH N   S I SGS+DG    WD+ +
Sbjct: 141  ISGSFDETVKIWEVKTGKCLKTLSAHSDPVS--AVHFNCSGSLIVSGSYDGLCRIWDAAS 198

Query: 1248 GENDSFAGKGHTNQVSRMTVDESGQ-LVSCSMDDTVRYTSLS----LRDYSG 1388
            G+            VS +    +G+ +++ ++D+T++    S    L+ Y+G
Sbjct: 199  GQCLKTLVDDDNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTG 250



 Score = 75.1 bits (183), Expect = 3e-13
 Identities = 57/225 (25%), Positives = 102/225 (45%), Gaps = 4/225 (1%)
 Frame = +3

Query: 357  HAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAG--KIKDIAWTEDS 530
            H   V   K++P+G ++AS      + IW         KYE   +    +I D+AW+ DS
Sbjct: 40   HTEAVSSVKFSPNGEWLASSSADRLIIIWGAYDG----KYEKTLYGHNLEISDVAWSSDS 95

Query: 531  KRIAVVGEGREKFGAVFLWD--SGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAA 704
             R+    + +     + LWD  SG  +  + GH+  +   +        + +GS D    
Sbjct: 96   SRLVSASDDK----TLKLWDVRSGKCLKTLKGHSNYVFCCNFNPPSNL-IISGSFDETVK 150

Query: 705  FFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKA 884
             +E    K   T+  HS  V+ V F+  G+   + S DG   I+D  +G+ + +L     
Sbjct: 151  IWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDAASGQCLKTLVDD-- 208

Query: 885  HDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSN 1019
             +  +  + +SP+  ++L+A+ D T K+WD +    + T+T   N
Sbjct: 209  DNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKN 253



 Score = 69.3 bits (168), Expect = 1e-11
 Identities = 62/243 (25%), Positives = 106/243 (43%), Gaps = 4/243 (1%)
 Frame = +3

Query: 576  VFLWDSGSSVGEIT--GHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGD 749
            + +W +     E T  GHN  I+ V    S   RL + SDD     ++    K   T+  
Sbjct: 65   IIIWGAYDGKYEKTLYGHNLEISDV-AWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKG 123

Query: 750  HSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDST 929
            HS +V C  F+P  N   + S D  + I++ KTG+ + +L    AH   + A+ ++   +
Sbjct: 124  HSNYVFCCNFNPPSNLIISGSFDETVKIWEVKTGKCLKTL---SAHSDPVSAVHFNCSGS 180

Query: 930  HLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLSGYINYLDKN 1109
             ++S S D   ++WD      + T     N     +       ++L+ +L   +   D +
Sbjct: 181  LIVSGSYDGLCRIWDAASGQCLKTLVDDDNPPVSFVKFSPNGKYILTATLDNTLKLWDYS 240

Query: 1110 NPSKPLRVIKGHSKSIQCLTVH--KNGGKSYIYSGSHDGHINYWDSETGENDSFAGKGHT 1283
               + L+   GH     C+  +    GGK +I SGS D  +  W+ +T E      +GHT
Sbjct: 241  R-GRCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQTKEIVQKL-QGHT 297

Query: 1284 NQV 1292
            + V
Sbjct: 298  DVV 300


>ref|NP_758440.1| POC1 centriolar protein homolog B isoform a [Homo sapiens].
          Length = 478

 Score = 87.4 bits (215), Expect = 5e-17
 Identities = 75/315 (23%), Positives = 130/315 (41%), Gaps = 5/315 (1%)
 Frame = +3

Query: 324  DNPAVADIYTEHAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKI 503
            ++P +   +  H   +     +P+G  +A+      L +W+   K H   Y Y      +
Sbjct: 6    EDPVLERYFKGHKAAITSLDLSPNGKQLATASWDTFLMLWNF--KPHARAYRYVGHKDVV 63

Query: 504  KDIAWTEDSKRIAVVGEGREKFGAVFLW--DSGSSVGEITGHNKVINSVDIKQSRPYRLA 677
              + ++     +A     R     V LW  D      E   H   + SVD      + LA
Sbjct: 64   TSVQFSPHGNLLASASRDR----TVRLWIPDKRGKFSEFKAHTAPVRSVDFSADGQF-LA 118

Query: 678  TGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEK 857
            T S+D     +     +F +++  H+ +V C +FSPDG    + S D  I I+D  T  K
Sbjct: 119  TASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWD--TTNK 176

Query: 858  VCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQL 1037
             C +       G    + ++P  T + SA  D+T KVWDV VN ++  + + S      +
Sbjct: 177  QC-VNNFSDSVGFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSG----GV 231

Query: 1038 GCLW---QKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSG 1208
             C+      ++L++ S  G +  LD     + +  ++GH+  +   TV  + G     SG
Sbjct: 232  NCISFHPSGNYLITASSDGTLKILDLLE-GRLIYTLQGHTGPV--FTVSFSKGGELFASG 288

Query: 1209 SHDGHINYWDSETGE 1253
              D  +  W +   E
Sbjct: 289  GADTQVLLWRTNFDE 303



 Score = 55.1 bits (131), Expect = 3e-07
 Identities = 63/293 (21%), Positives = 122/293 (41%), Gaps = 10/293 (3%)
 Frame = +3

Query: 1140 GHSKSIQCLTVHKNGGKSYIYSGSHDGHINYW-DSETGENDSFAGKGHTNQVSRMTVDES 1316
            GH   +  +    +G  + + S S D  +  W   + G+   F  K HT  V  +     
Sbjct: 58   GHKDVVTSVQFSPHG--NLLASASRDRTVRLWIPDKRGKFSEF--KAHTAPVRSVDFSAD 113

Query: 1317 GQ-LVSCSMDDTVRYTSLSLRDYSGQGVVKLEVQPKCVAVGPGGYTVVVCI-GQIVLLKD 1490
            GQ L + S D +++  S+  + +    + +     +C    P G  +V C   + + + D
Sbjct: 114  GQFLATASEDKSIKVWSMYRQRFL-YSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWD 172

Query: 1491 --QRKCFS--IDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGSTLKDEGKLLEAKG 1658
               ++C +   D+ G+    V  +P G  +A  G+D  V+++ +  + L    ++    G
Sbjct: 173  TTNKQCVNNFSDSVGFA-NFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQV--HSG 229

Query: 1659 PVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHFASG 1838
             V  +++   G +L    +   + +  + +G     +  GH   +  +++S   E FASG
Sbjct: 230  GVNCISFHPSGNYLITASSDGTLKILDLLEGRLIYTL-QGHTGPVFTVSFSKGGELFASG 288

Query: 1839 GMDMMVYVWTLSDPETRVK---IQDAHRLHHVSSLAWLDEHTLVTTSHDASVK 1988
            G D  V +W  +  E   K    ++  RLH  S    LD +      H+  V+
Sbjct: 289  GADTQVLLWRTNFDELHCKGLTKRNLKRLHFDSPPHLLDIYPRTPHPHEEKVE 341


>ref|NP_060566.2| notchless protein homolog 1 isoform a [Homo sapiens].
          Length = 485

 Score = 86.3 bits (212), Expect = 1e-16
 Identities = 94/432 (21%), Positives = 168/432 (38%), Gaps = 14/432 (3%)
 Frame = +3

Query: 612  ITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDG 791
            + GH++ + SV    +  Y LA+GS D    F++       FT   H  +V  + +SPDG
Sbjct: 110  LEGHSEAVISVAFSPTGKY-LASGSGDTTVRFWDLSTETPHFTCKGHRHWVLSISWSPDG 168

Query: 792  NRFATASADGQIYIYDGKTGEKV-CSLGGSKAHDGGIYAISW-----SPDSTHLLSASGD 953
             + A+   +GQI ++D  TG++V  +L G   H   I  +SW     +P+  ++ S+S D
Sbjct: 169  RKLASGCKNGQILLWDPSTGKQVGRTLAG---HSKWITGLSWEPLHANPECRYVASSSKD 225

Query: 954  KTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLSGYINYLDKNNPSKPLRV 1133
             + ++WD                                                +  R+
Sbjct: 226  GSVRIWDTTA--------------------------------------------GRCERI 241

Query: 1134 IKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGE-NDSFAGKGHTNQVSRMTVD 1310
            + GH++S+ CL   + GG   +YS S D  I  W +  G    +  G GH      ++ D
Sbjct: 242  LTGHTQSVTCL---RWGGDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTD 298

Query: 1311 ---ESGQLVSCSMDDTVRYTSLSLRDYSGQGVVKLEV----QPKCVAVGPGGYTVVVCIG 1469
                +G           +    SL++   + + +  +     P+ +  G   +T+ +   
Sbjct: 299  YALRTGAFEPAEASVNPQDLQGSLQELKERALSRYNLVRGQGPERLVSGSDDFTLFLWSP 358

Query: 1470 QIVLLKDQRKCFSIDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGSTLKDEGKLLE 1649
                 +D++    +         V   P    VA    D +++L+   G T K    L  
Sbjct: 359  ----AEDKKPLTRMTGHQALINQVLFSPDSRIVASASFDKSIKLWD--GRTGKYLASLRG 412

Query: 1650 AKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHF 1829
                V  +A+S D   L    +   + V+ V       ++  GH  ++  + WSPD +  
Sbjct: 413  HVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLAMDL-PGHADEVYAVDWSPDGQRV 471

Query: 1830 ASGGMDMMVYVW 1865
            ASGG D  + +W
Sbjct: 472  ASGGKDKCLRIW 483



 Score = 73.6 bits (179), Expect = 7e-13
 Identities = 90/380 (23%), Positives = 151/380 (39%), Gaps = 6/380 (1%)
 Frame = +3

Query: 879  KAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKD 1058
            + H   + ++++SP   +L S SGD T + WD++  +   T     + +   L   W  D
Sbjct: 111  EGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCKGHRHWV---LSISWSPD 167

Query: 1059 --HLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLT---VHKNGGKSYIYSGSHDGH 1223
               L S   +G I   D +   +  R + GHSK I  L+   +H N    Y+ S S DG 
Sbjct: 168  GRKLASGCKNGQILLWDPSTGKQVGRTLAGHSKWITGLSWEPLHANPECRYVASSSKDGS 227

Query: 1224 INYWDSETGENDSFAGKGHTNQVSRMTVDESGQLVSCSMDDTVRYTSLSLRDYSGQGVVK 1403
            +  WD+  G  +     GHT  V+ +     G L S S D T++         +  GV+ 
Sbjct: 228  VRIWDTTAGRCERIL-TGHTQSVTCLRWGGDGLLYSASQDRTIKVWR------AHDGVLC 280

Query: 1404 LEVQPKCVAVGPGGYTVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVHPGGETVAVGGA 1583
              +Q      G G +     +  + L  D    +++    +EP   +V+P          
Sbjct: 281  RTLQ------GHGHW-----VNTMALSTD----YALRTGAFEPAEASVNP---------Q 316

Query: 1584 DGNVRLYSILGSTLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSEN 1763
            D    L  +    L     L+  +GP   V+ S D              ++S A+     
Sbjct: 317  DLQGSLQELKERAL-SRYNLVRGQGPERLVSGSDDFTLF----------LWSPAEDKKPL 365

Query: 1764 NVFYGHHAKIVCLAWSPDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAW- 1940
                GH A I  + +SPD+   AS   D  + +W     +    ++    +  V  +AW 
Sbjct: 366  TRMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRG--HVAAVYQIAWS 423

Query: 1941 LDEHTLVTTSHDASVKEWTI 2000
             D   LV+ S D+++K W +
Sbjct: 424  ADSRLLVSGSSDSTLKVWDV 443



 Score = 63.2 bits (152), Expect = 1e-09
 Identities = 95/428 (22%), Positives = 168/428 (39%), Gaps = 12/428 (2%)
 Frame = +3

Query: 357  HAHQVVVAKYAPSGFYIASGDVSGKLRIWD-TTQKEHLLKYEYQPFAGKIKDIAWTEDSK 533
            H+  V+   ++P+G Y+ASG     +R WD +T+  H     ++ +   +  I+W+ D +
Sbjct: 113  HSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCKGHRHW---VLSISWSPDGR 169

Query: 534  RIAVVGEGREKFGAVFLWD--SGSSVGE-ITGHNKVINSVDIK--QSRP--YRLATGSDD 692
            ++A       K G + LWD  +G  VG  + GH+K I  +  +   + P    +A+ S D
Sbjct: 170  KLA----SGCKNGQILLWDPSTGKQVGRTLAGHSKWITGLSWEPLHANPECRYVASSSKD 225

Query: 693  NCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLG 872
                 ++    + +  +  H++ V C+R+  DG  + +AS D  I ++    G    +L 
Sbjct: 226  GSVRIWDTTAGRCERILTGHTQSVTCLRWGGDGLLY-SASQDRTIKVWRAHDGVLCRTLQ 284

Query: 873  GSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQ 1052
            G   H   +  ++ S D      A     + V   ++   +    +    L +      Q
Sbjct: 285  G---HGHWVNTMALSTDYALRTGAFEPAEASVNPQDLQGSLQ--ELKERALSRYNLVRGQ 339

Query: 1053 KDHLLSISLSGYINYL-DKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHIN 1229
                L      +  +L       KPL  + GH   I    V  +     + S S D  I 
Sbjct: 340  GPERLVSGSDDFTLFLWSPAEDKKPLTRMTGHQALIN--QVLFSPDSRIVASASFDKSIK 397

Query: 1230 YWDSETGENDSFAGKGHTNQVSRMTVD-ESGQLVSCSMDDTVRYTSLSLRDYSGQGVVKL 1406
             WD  TG+  + + +GH   V ++    +S  LVS S D T++   +  +          
Sbjct: 398  LWDGRTGKYLA-SLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQK--------- 447

Query: 1407 EVQPKCVAVGPGGYTVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAV--HPGGETVAVGG 1580
                                             ++D PG+  EV AV   P G+ VA GG
Sbjct: 448  --------------------------------LAMDLPGHADEVYAVDWSPDGQRVASGG 475

Query: 1581 ADGNVRLY 1604
             D  +R++
Sbjct: 476  KDKCLRIW 483


>ref|NP_079510.1| WD repeat-containing protein 61 [Homo sapiens].
          Length = 305

 Score = 81.3 bits (199), Expect = 4e-15
 Identities = 59/199 (29%), Positives = 92/199 (46%)
 Frame = +3

Query: 408  ASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKFGAVFLW 587
            AS  +   +R+WD    + +   +  P       +A++ DS+ +A  G    K   +F  
Sbjct: 80   ASSSLDAHIRLWDLENGKQIKSIDAGPVDAWT--LAFSPDSQYLAT-GTHVGKVN-IFGV 135

Query: 588  DSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVN 767
            +SG     +    K I S+       Y LA+G+ D     F+    K   T+  H+  + 
Sbjct: 136  ESGKKEYSLDTRGKFILSIAYSPDGKY-LASGAIDGIINIFDIATGKLLHTLEGHAMPIR 194

Query: 768  CVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDSTHLLSAS 947
             + FSPD     TAS DG I IYD +      +L G   H   +  +++ PD TH +S+S
Sbjct: 195  SLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG---HASWVLNVAFCPDDTHFVSSS 251

Query: 948  GDKTSKVWDVNVNSVVNTF 1004
             DK+ KVWDV   + V+TF
Sbjct: 252  SDKSVKVWDVGTRTCVHTF 270



 Score = 56.6 bits (135), Expect = 9e-08
 Identities = 35/112 (31%), Positives = 61/112 (54%)
 Frame = +3

Query: 672  LATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTG 851
            LATG+       F     K ++++    +F+  + +SPDG   A+ + DG I I+D  TG
Sbjct: 121  LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 180

Query: 852  EKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFT 1007
            + + +L G   H   I ++++SPDS  L++AS D   K++DV   ++  T +
Sbjct: 181  KLLHTLEG---HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS 229



 Score = 51.6 bits (122), Expect = 3e-06
 Identities = 56/246 (22%), Positives = 103/246 (41%), Gaps = 15/246 (6%)
 Frame = +3

Query: 1173 HKNGGKSYIYSGSHDGHINYWDSETGEND-SFAGKGHTNQVSRMTVDESGQL---VSCSM 1340
            +K      + +GS D  +  W       D  ++ +GH  Q+  ++VD S  L    S S+
Sbjct: 27   NKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGH--QLGVVSVDISHTLPIAASSSL 84

Query: 1341 DDTVRYTSLSLRDYSGQGVVKLEVQPK---CVAVGPGGYTVVVC--IGQIVL--LKDQRK 1499
            D  +R   L     +G+ +  ++  P     +A  P    +     +G++ +  ++  +K
Sbjct: 85   DAHIRLWDLE----NGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 140

Query: 1500 CFSIDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGSTLKDEGKLLEAKG----PVT 1667
             +S+D  G     +A  P G+ +A G  DG + ++ I        GKLL        P+ 
Sbjct: 141  EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIA------TGKLLHTLEGHAMPIR 194

Query: 1668 DVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHFASGGMD 1847
             + +S D   L        + ++ V        +  GH + ++ +A+ PD+ HF S   D
Sbjct: 195  SLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS-GHASWVLNVAFCPDDTHFVSSSSD 253

Query: 1848 MMVYVW 1865
              V VW
Sbjct: 254  KSVKVW 259


>ref|NP_001186706.1| POC1 centriolar protein homolog B isoform b [Homo sapiens].
          Length = 436

 Score = 79.3 bits (194), Expect = 1e-14
 Identities = 68/271 (25%), Positives = 112/271 (41%), Gaps = 5/271 (1%)
 Frame = +3

Query: 456  KEHLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKFGAVFLW--DSGSSVGEITGHNK 629
            K H   Y Y      +  + ++     +A     R     V LW  D      E   H  
Sbjct: 6    KPHARAYRYVGHKDVVTSVQFSPHGNLLASASRDR----TVRLWIPDKRGKFSEFKAHTA 61

Query: 630  VINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATA 809
             + SVD      + LAT S+D     +     +F +++  H+ +V C +FSPDG    + 
Sbjct: 62   PVRSVDFSADGQF-LATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSC 120

Query: 810  SADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNS 989
            S D  I I+D  T  K C +       G    + ++P  T + SA  D+T KVWDV VN 
Sbjct: 121  SEDKTIKIWD--TTNKQC-VNNFSDSVGFANFVDFNPSGTCIASAGSDQTVKVWDVRVNK 177

Query: 990  VVNTFTMGSNVLDQQLGCLW---QKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQ 1160
            ++  + + S      + C+      ++L++ S  G +  LD     + +  ++GH+  + 
Sbjct: 178  LLQHYQVHSG----GVNCISFHPSGNYLITASSDGTLKILDLLE-GRLIYTLQGHTGPV- 231

Query: 1161 CLTVHKNGGKSYIYSGSHDGHINYWDSETGE 1253
              TV  + G     SG  D  +  W +   E
Sbjct: 232  -FTVSFSKGGELFASGGADTQVLLWRTNFDE 261



 Score = 58.9 bits (141), Expect = 2e-08
 Identities = 52/212 (24%), Positives = 78/212 (36%)
 Frame = +3

Query: 357 HAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKR 536
           H H V  AK++P G  I S      ++IWDTT K+ +    +    G    + +      
Sbjct: 101 HTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCV--NNFSDSVGFANFVDFNPSGTC 158

Query: 537 IAVVGEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEG 716
           IA  G  +     V +WD    V ++  H +V                            
Sbjct: 159 IASAGSDQ----TVKVWD--VRVNKLLQHYQV---------------------------- 184

Query: 717 PPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGG 896
                      HS  VNC+ F P GN   TAS+DG + I D   G  + +L G   H G 
Sbjct: 185 -----------HSGGVNCISFHPSGNYLITASSDGTLKILDLLEGRLIYTLQG---HTGP 230

Query: 897 IYAISWSPDSTHLLSASGDKTSKVWDVNVNSV 992
           ++ +S+S       S   D    +W  N + +
Sbjct: 231 VFTVSFSKGGELFASGGADTQVLLWRTNFDEL 262



 Score = 55.1 bits (131), Expect = 3e-07
 Identities = 63/293 (21%), Positives = 122/293 (41%), Gaps = 10/293 (3%)
 Frame = +3

Query: 1140 GHSKSIQCLTVHKNGGKSYIYSGSHDGHINYW-DSETGENDSFAGKGHTNQVSRMTVDES 1316
            GH   +  +    +G  + + S S D  +  W   + G+   F  K HT  V  +     
Sbjct: 16   GHKDVVTSVQFSPHG--NLLASASRDRTVRLWIPDKRGKFSEF--KAHTAPVRSVDFSAD 71

Query: 1317 GQ-LVSCSMDDTVRYTSLSLRDYSGQGVVKLEVQPKCVAVGPGGYTVVVCI-GQIVLLKD 1490
            GQ L + S D +++  S+  + +    + +     +C    P G  +V C   + + + D
Sbjct: 72   GQFLATASEDKSIKVWSMYRQRFL-YSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWD 130

Query: 1491 --QRKCFS--IDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGSTLKDEGKLLEAKG 1658
               ++C +   D+ G+    V  +P G  +A  G+D  V+++ +  + L    ++    G
Sbjct: 131  TTNKQCVNNFSDSVGFA-NFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQV--HSG 187

Query: 1659 PVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHFASG 1838
             V  +++   G +L    +   + +  + +G     +  GH   +  +++S   E FASG
Sbjct: 188  GVNCISFHPSGNYLITASSDGTLKILDLLEGRLIYTL-QGHTGPVFTVSFSKGGELFASG 246

Query: 1839 GMDMMVYVWTLSDPETRVK---IQDAHRLHHVSSLAWLDEHTLVTTSHDASVK 1988
            G D  V +W  +  E   K    ++  RLH  S    LD +      H+  V+
Sbjct: 247  GADTQVLLWRTNFDELHCKGLTKRNLKRLHFDSPPHLLDIYPRTPHPHEEKVE 299


>ref|NP_849143.1| WD repeat-containing protein 69 [Homo sapiens].
          Length = 415

 Score = 78.2 bits (191), Expect = 3e-14
 Identities = 58/208 (27%), Positives = 92/208 (44%), Gaps = 2/208 (0%)
 Frame = +3

Query: 357 HAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKR 536
           H  ++V   + P    +A+G +    ++WD    E +  Y  +  + +I  +++     R
Sbjct: 176 HTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQNGEEV--YTLRGHSAEIISLSFNTSGDR 233

Query: 537 IAVVGEGREKFGAVFLWDS--GSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFF 710
           I + G        V +WD+  G  V  + GH   I+S          L TGS D     +
Sbjct: 234 I-ITGSFDH---TVVVWDADTGRKVNILIGHCAEISSASFNWDCSLIL-TGSMDKTCKLW 288

Query: 711 EGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHD 890
           +    K   T+  H   +    F   G   ATASADG   I+   T + +  L G   H+
Sbjct: 289 DATNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEG---HE 345

Query: 891 GGIYAISWSPDSTHLLSASGDKTSKVWD 974
           G I  IS++P   HLL+ S DKT+++WD
Sbjct: 346 GEISKISFNPQGNHLLTGSSDKTARIWD 373



 Score = 75.9 bits (185), Expect = 1e-13
 Identities = 70/301 (23%), Positives = 121/301 (40%), Gaps = 43/301 (14%)
 Frame = +3

Query: 582  LWD--SGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHS 755
            LWD  SG  +  + GH  V+ ++        ++ATGS D     +     K   T   H+
Sbjct: 118  LWDTASGEELNTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHT 177

Query: 756  RFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKA----------------- 884
              + C+ F+P     AT S D    ++D + GE+V +L G  A                 
Sbjct: 178  AEIVCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRIITG 237

Query: 885  ----------------------HDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVN 998
                                  H   I + S++ D + +L+ S DKT K+WD      V 
Sbjct: 238  SFDHTVVVWDADTGRKVNILIGHCAEISSASFNWDCSLILTGSMDKTCKLWDATNGKCVA 297

Query: 999  TFT-MGSNVLDQQLGCLWQKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVH 1175
            T T     +LD    C      L++ + +     +      K +  ++GH   I  ++ +
Sbjct: 298  TLTGHDDEILD---SCFDYTGKLIATASADGTARIFSAATRKCIAKLEGHEGEISKISFN 354

Query: 1176 KNGGKSYIYSGSHDGHINYWDSETGENDSFAGKGHTNQVSRMTVDESGQLV-SCSMDDTV 1352
              G  +++ +GS D     WD++TG+      +GHT+++     +  G +V + S D+T 
Sbjct: 355  PQG--NHLLTGSSDKTARIWDAQTGQCLQVL-EGHTDEIFSCAFNYKGNIVITGSKDNTC 411

Query: 1353 R 1355
            R
Sbjct: 412  R 412


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 80,839,418
Number of extensions: 2186306
Number of successful extensions: 12029
Number of sequences better than 1.0e-05: 107
Number of HSP's gapped: 11020
Number of HSP's successfully gapped: 193
Length of query: 734
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 624
Effective length of database: 14,671,124
Effective search space: 9154781376
Effective search space used: 9154781376
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007604
         (2204 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL896531.2| Sus scrofa unplaced genomic scaffold ChrUScaf4415      466   e-128

>gb|GL896531.2| Sus scrofa unplaced genomic scaffold ChrUScaf4415
          Length = 341189

 Score =  466 bits (235), Expect = e-128
 Identities = 235/235 (100%)
 Strand = Plus / Minus

                                                                         
Query: 906   atcagctggagtcctgatagcactcacttgctctccgcttccggagacaaaacctctaaa 965
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23545 atcagctggagtcctgatagcactcacttgctctccgcttccggagacaaaacctctaaa 23486

                                                                         
Query: 966   gtttgggacgtcaatgtcaactctgtggtcaacacgtttaccatgggctccaacgtcctg 1025
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23485 gtttgggacgtcaatgtcaactctgtggtcaacacgtttaccatgggctccaacgtcctg 23426

                                                                         
Query: 1026  gaccagcagctgggctgcttgtggcagaaggaccacctcctcagcatctccctgtccggc 1085
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23425 gaccagcagctgggctgcttgtggcagaaggaccacctcctcagcatctccctgtccggc 23366

                                                                    
Query: 1086  tacatcaattacctggacaagaacaaccccagcaaacccctgcgggtcatcaagg 1140
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23365 tacatcaattacctggacaagaacaaccccagcaaacccctgcgggtcatcaagg 23311



 Score =  347 bits (175), Expect = 2e-92
 Identities = 175/175 (100%)
 Strand = Plus / Minus

                                                                         
Query: 1584  gacgggaacgtccgcctctactccatcctgggctccacgctgaaggacgagggcaagctc 1643
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12911 gacgggaacgtccgcctctactccatcctgggctccacgctgaaggacgagggcaagctc 12852

                                                                         
Query: 1644  ctggaggccaagggccccgtgaccgacgtggcctattcccacgacggcgccttcctcgcc 1703
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12851 ctggaggccaagggccccgtgaccgacgtggcctattcccacgacggcgccttcctcgcc 12792

                                                                    
Query: 1704  gtgtgtgacgccagcaaagtggtcacggttttcagcgttgctgacggctactcgg 1758
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12791 gtgtgtgacgccagcaaagtggtcacggttttcagcgttgctgacggctactcgg 12737



 Score =  289 bits (146), Expect = 3e-75
 Identities = 146/146 (100%)
 Strand = Plus / Minus

                                                                         
Query: 1757  ggagaacaacgtcttctatggacaccacgccaagatcgtctgcctggcctggtccccaga 1816
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11181 ggagaacaacgtcttctatggacaccacgccaagatcgtctgcctggcctggtccccaga 11122

                                                                         
Query: 1817  caacgagcactttgcctcgggcggcatggacatgatggtgtacgtgtggaccctcagtga 1876
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11121 caacgagcactttgcctcgggcggcatggacatgatggtgtacgtgtggaccctcagtga 11062

                                       
Query: 1877  ccccgagaccagggtcaagatccaag 1902
             ||||||||||||||||||||||||||
Sbjct: 11061 ccccgagaccagggtcaagatccaag 11036



 Score =  268 bits (135), Expect = 1e-68
 Identities = 150/154 (97%), Gaps = 2/154 (1%)
 Strand = Plus / Minus

                                                                         
Query: 416   agatgtatctgggaagctgaggatctgggacaccacgcagaaggagcacctcttgaagta 475
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33089 agatgtatctgggaagctgaggatctgggacaccacgcagaaggagcacctcttgaagta 33030

                                                                         
Query: 476   cgagtaccagcctttcgctgggaagatcaaggacattg--cttggacggaagacagtaag 533
             ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||  ||
Sbjct: 33029 cgagtaccagcctttcgctgggaagatcaaggacattgcncttggacggaagacagacag 32970

                                               
Query: 534   aggatcgcagtggtcggggaaggacgggagaagt 567
             ||||||||||||||||||||||||||||||||||
Sbjct: 32969 aggatcgcagtggtcggggaaggacgggagaagt 32936



 Score =  236 bits (119), Expect = 4e-59
 Identities = 119/119 (100%)
 Strand = Plus / Minus

                                                                         
Query: 1266  gccgggaagggccacacgaaccaggtgtccaggatgaccgtggacgagtcggggcagctg 1325
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19628 gccgggaagggccacacgaaccaggtgtccaggatgaccgtggacgagtcggggcagctg 19569

                                                                        
Query: 1326  gtgagctgcagcatggacgacacagtgcggtacaccagcctctcgctgcgggactacag 1384
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19568 gtgagctgcagcatggacgacacagtgcggtacaccagcctctcgctgcgggactacag 19510



 Score =  182 bits (92), Expect = 5e-43
 Identities = 92/92 (100%)
 Strand = Plus / Minus

                                                                         
Query: 1381  acagcgggcagggggtcgtgaaactggaggttcagccgaagtgcgtggccgtggggcccg 1440
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17730 acagcgggcagggggtcgtgaaactggaggttcagccgaagtgcgtggccgtggggcccg 17671

                                             
Query: 1441  ggggctacaccgtggtcgtgtgcatcgggcag 1472
             ||||||||||||||||||||||||||||||||
Sbjct: 17670 ggggctacaccgtggtcgtgtgcatcgggcag 17639



 Score =  182 bits (92), Expect = 5e-43
 Identities = 92/92 (100%)
 Strand = Plus / Minus

                                                                         
Query: 1138  agggtcacagcaaatccatccagtgcctgacggtgcataaaaacggcggcaagtcgtaca 1197
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21537 agggtcacagcaaatccatccagtgcctgacggtgcataaaaacggcggcaagtcgtaca 21478

                                             
Query: 1198  tctactctgggagccacgacggacacattaat 1229
             ||||||||||||||||||||||||||||||||
Sbjct: 21477 tctactctgggagccacgacggacacattaat 21446



 Score =  180 bits (91), Expect = 2e-42
 Identities = 91/91 (100%)
 Strand = Plus / Minus

                                                                         
Query: 327   aacccggccgtggctgacatctacacggagcacgcccatcaggtggtggtggccaagtac 386
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37998 aacccggccgtggctgacatctacacggagcacgcccatcaggtggtggtggccaagtac 37939

                                            
Query: 387   gcgcccagcggcttctacatcgcctctggag 417
             |||||||||||||||||||||||||||||||
Sbjct: 37938 gcgcccagcggcttctacatcgcctctggag 37908



 Score =  168 bits (85), Expect = 8e-39
 Identities = 85/85 (100%)
 Strand = Plus / Minus

                                                                         
Query: 1471  agatcgtcctgctgaaggaccagaggaagtgcttcagtatcgacaaccccggctacgagc 1530
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14369 agatcgtcctgctgaaggaccagaggaagtgcttcagtatcgacaaccccggctacgagc 14310

                                      
Query: 1531  ccgaagtggtggcggtgcaccccgg 1555
             |||||||||||||||||||||||||
Sbjct: 14309 ccgaagtggtggcggtgcaccccgg 14285



 Score =  168 bits (85), Expect = 8e-39
 Identities = 85/85 (100%)
 Strand = Plus / Minus

                                                                         
Query: 566   gttcggcgccgtcttcctgtgggacagcggctcctctgtgggcgagatcacggggcacaa 625
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31758 gttcggcgccgtcttcctgtgggacagcggctcctctgtgggcgagatcacggggcacaa 31699

                                      
Query: 626   caaagtcatcaacagcgtggacatc 650
             |||||||||||||||||||||||||
Sbjct: 31698 caaagtcatcaacagcgtggacatc 31674



 Score =  165 bits (83), Expect = 1e-37
 Identities = 83/83 (100%)
 Strand = Plus / Minus

                                                                         
Query: 823   agatctacatctatgacgggaagacgggagagaaggtgtgctcgctgggaggaagcaagg 882
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23893 agatctacatctatgacgggaagacgggagagaaggtgtgctcgctgggaggaagcaagg 23834

                                    
Query: 883   ctcacgacggcggcatctatgct 905
             |||||||||||||||||||||||
Sbjct: 23833 ctcacgacggcggcatctatgct 23811



 Score =  147 bits (74), Expect = 3e-32
 Identities = 74/74 (100%)
 Strand = Plus / Minus

                                                                         
Query: 674   ggcgactggcagcgacgacaactgcgccgcgttctttgaggggccaccgttcaagttcaa 733
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31573 ggcgactggcagcgacgacaactgcgccgcgttctttgaggggccaccgttcaagttcaa 31514

                           
Query: 734   gttcacaattggag 747
             ||||||||||||||
Sbjct: 31513 gttcacaattggag 31500



 Score =  123 bits (62), Expect = 4e-25
 Identities = 65/66 (98%)
 Strand = Plus / Minus

                                                                        
Query: 2000 ctcctactgaggagccctcctcggaggacccaatcagggactcggttgatcgcagctcag 2059
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9267 ctccttctgaggagccctcctcggaggacccaatcagggactcggttgatcgcagctcag 9208

                  
Query: 2060 tcactc 2065
            ||||||
Sbjct: 9207 tcactc 9202



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 39/39 (100%)
 Strand = Plus / Minus

                                                    
Query: 288   tacaccaatggaaagtgcgtcatcctaaggaacatcgac 326
             |||||||||||||||||||||||||||||||||||||||
Sbjct: 50001 tacaccaatggaaagtgcgtcatcctaaggaacatcgac 49963



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                          
Query: 1901 agatgcgcaccggctccaccacgtgagcag 1930
            ||||||||||||||||||||||||||||||
Sbjct: 9397 agatgcgcaccggctccaccacgtgagcag 9368


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 43,939,389
Number of extensions: 201
Number of successful extensions: 201
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 15
Length of query: 2204
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2182
Effective length of database: 2,808,408,574
Effective search space: 6127947508468
Effective search space used: 6127947508468
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)