Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007604
(2204 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039811.1| WD repeat-containing protein 1 [Bos taurus]. 1226 0.0
Alignment gi|NP_001098945.1| WD repeat-containing protein 5 [Bos taurus]. 92 1e-18
Alignment gi|XP_001788325.2| PREDICTED: WD repeat domain 5 [Bos taurus]. 91 3e-18
Alignment gi|NP_001014887.1| notchless protein homolog 1 [Bos taurus]. 90 9e-18
Alignment gi|NP_001092501.1| WD repeat-containing protein 51B [Bos taurus]. 84 7e-16
Alignment gi|XP_001251626.3| PREDICTED: WD repeat domain 51B-like, partia... 84 7e-16
Alignment gi|NP_001033186.1| WD repeat-containing protein 61 [Bos taurus]. 81 3e-15
Alignment gi|NP_001157418.1| WD repeat-containing protein 38 [Bos taurus]. 79 2e-14
Alignment gi|NP_001178436.1| apoptotic peptidase activating factor 1 [Bos... 76 1e-13
Alignment gi|NP_001033649.1| POC1 centriolar protein homolog A [Bos tauru... 76 1e-13
>ref|NP_001039811.1| WD repeat-containing protein 1 [Bos taurus].
Length = 606
Score = 1226 bits (3172), Expect = 0.0
Identities = 588/606 (97%), Positives = 602/606 (99%)
Frame = +3
Query: 189 MPYEIKKVFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVILRNIDNPAVADIYTEHAHQ 368
MPYEIKKVFASLPQVERGVSKI+GGDPKGN+FLYTNGKCVILRNIDNPA+ADIYTEHAHQ
Sbjct: 1 MPYEIKKVFASLPQVERGVSKIVGGDPKGNSFLYTNGKCVILRNIDNPAIADIYTEHAHQ 60
Query: 369 VVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV 548
VVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV
Sbjct: 61 VVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV 120
Query: 549 GEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFK 728
GEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRL TGSDDNCAAFFEGPPFK
Sbjct: 121 GEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLVTGSDDNCAAFFEGPPFK 180
Query: 729 FKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAI 908
FKFTI DH RFVNCVRFSPDGNRFATASADGQI+IYDGKTGEKVC+LGGSKAHDGGIYAI
Sbjct: 181 FKFTISDHGRFVNCVRFSPDGNRFATASADGQIFIYDGKTGEKVCALGGSKAHDGGIYAI 240
Query: 909 SWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLSGY 1088
SWSPDSTHLLSASGDKTSK+WDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLSGY
Sbjct: 241 SWSPDSTHLLSASGDKTSKIWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLSGY 300
Query: 1089 INYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFA 1268
INYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFA
Sbjct: 301 INYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFA 360
Query: 1269 GKGHTNQVSRMTVDESGQLVSCSMDDTVRYTSLSLRDYSGQGVVKLEVQPKCVAVGPGGY 1448
GKGHTNQVSRMTVDE GQLVSCSMDDTVRYT+L+LRDYSGQGVVKL+VQPKC+AVGPGGY
Sbjct: 361 GKGHTNQVSRMTVDEHGQLVSCSMDDTVRYTNLTLRDYSGQGVVKLDVQPKCLAVGPGGY 420
Query: 1449 TVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGSTLK 1628
TVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILG+TLK
Sbjct: 421 TVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGTTLK 480
Query: 1629 DEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAW 1808
DEGKLLEAKGPVTD+A+SHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAW
Sbjct: 481 DEGKLLEAKGPVTDLAFSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAW 540
Query: 1809 SPDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVK 1988
SPDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVK
Sbjct: 541 SPDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVK 600
Query: 1989 EWTISY 2006
EWTI+Y
Sbjct: 601 EWTIAY 606
>ref|NP_001098945.1| WD repeat-containing protein 5 [Bos taurus].
Length = 334
Score = 92.4 bits (228), Expect = 1e-18
Identities = 75/234 (32%), Positives = 116/234 (49%), Gaps = 10/234 (4%)
Frame = +3
Query: 717 PPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYI---YDGKTGEKVCSLGGSKAH 887
P + KFT+ H++ V+ V+FSP+G A++SAD I I YDGK EK S H
Sbjct: 33 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTIS-----GH 86
Query: 888 DGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLW--QKDH 1061
GI ++WS DS L+SAS DKT K+WDV+ + T SN + C + Q +
Sbjct: 87 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV---FCCNFNPQSNL 143
Query: 1062 LLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDS 1241
++S S + D K L+ + HS + VH N S I S S+DG WD+
Sbjct: 144 IVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVS--AVHFNRDGSLIVSSSYDGLCRIWDT 200
Query: 1242 ETGENDSFAGKGHTNQVSRMTVDESGQ-LVSCSMDDTVRYTSLS----LRDYSG 1388
+G+ VS + +G+ +++ ++D+T++ S L+ Y+G
Sbjct: 201 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 254
Score = 73.2 bits (178), Expect = 9e-13
Identities = 73/316 (23%), Positives = 128/316 (40%), Gaps = 4/316 (1%)
Frame = +3
Query: 357 HAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGK--IKDIAWTEDS 530
H V K++P+G ++AS ++IW K+E K I D+AW+ DS
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDS 99
Query: 531 KRIAVVGEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFF 710
N ++++ D K + + +++G
Sbjct: 100 -------------------------------NLLVSASDDKTLKIWDVSSG--------- 119
Query: 711 EGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHD 890
K T+ HS +V C F+P N + S D + I+D KTG+ + +L AH
Sbjct: 120 -----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL---PAHS 171
Query: 891 GGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLS 1070
+ A+ ++ D + ++S+S D ++WD + T N + ++L+
Sbjct: 172 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 231
Query: 1071 ISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVH--KNGGKSYIYSGSHDGHINYWDSE 1244
+L + D + K L+ GH C+ + GGK +I SGS D + W+ +
Sbjct: 232 ATLDNTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQ 289
Query: 1245 TGENDSFAGKGHTNQV 1292
T E +GHT+ V
Sbjct: 290 TKEIVQKL-QGHTDVV 304
Score = 67.4 bits (163), Expect = 5e-11
Identities = 63/262 (24%), Positives = 113/262 (43%), Gaps = 6/262 (2%)
Frame = +3
Query: 612 ITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDG 791
+ GH K ++SV + + LA+ S D + KF+ TI H ++ V +S D
Sbjct: 41 LAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 792 NRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVW 971
N +AS D + I+D +G+ + +L K H ++ +++P S ++S S D++ ++W
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTL---KGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156
Query: 972 DVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLS--GYINYLDKNNPSKPLRVIKGH 1145
DV + T S D + +D L +S S G D + +I
Sbjct: 157 DVKTGKCLKTLPAHS---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 213
Query: 1146 SKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFAGKGHTNQ----VSRMTVDE 1313
+ + + NG YI + + D + WD G+ GH N+ + +V
Sbjct: 214 NPPVSFVKFSPNG--KYILAATLDNTLKLWDYSKGKCLK-TYTGHKNEKYCIFANFSVTG 270
Query: 1314 SGQLVSCSMDDTVRYTSLSLRD 1379
+VS S D+ V +L ++
Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKE 292
Score = 50.8 bits (120), Expect = 5e-06
Identities = 73/316 (23%), Positives = 126/316 (39%), Gaps = 19/316 (6%)
Frame = +3
Query: 1104 KNNPSKPLRVIK----GHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFAG 1271
K P KP +K GH+K++ + NG ++ S S D I W + G+ +
Sbjct: 27 KPTPVKPNYALKFTLAGHTKAVSSVKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTIS 84
Query: 1272 KGHTNQVSRMT-VDESGQLVSCSMDDTVRYTSLS----LRDYSGQG--VVKLEVQPKCVA 1430
GH +S + +S LVS S D T++ +S L+ G V P+
Sbjct: 85 -GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 143
Query: 1431 VGPGGYTVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVH--PGGETVAVGGADGNVRLY 1604
+ G + V I + KC P + V AVH G + DG R++
Sbjct: 144 IVSGSFDESVRIWDV----KTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198
Query: 1605 SIL-GSTLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGH 1781
G LK + + PV+ V +S +G ++ + ++ + G + GH
Sbjct: 199 DTASGQCLKT--LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGH 255
Query: 1782 HAKIVCLAWS---PDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEH 1952
+ C+ + + SG D +VY+W L E K+Q H +S+ E+
Sbjct: 256 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISTACHPTEN 314
Query: 1953 TLVTTS--HDASVKEW 1994
+ + + +D ++K W
Sbjct: 315 IIASAALENDKTIKLW 330
>ref|XP_001788325.2| PREDICTED: WD repeat domain 5 [Bos taurus].
Length = 330
Score = 91.3 bits (225), Expect = 3e-18
Identities = 74/235 (31%), Positives = 115/235 (48%), Gaps = 9/235 (3%)
Frame = +3
Query: 711 EGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYI---YDGKTGEKVCSLGGSK 881
E P + KFT+ H+ V+ V+FSP+G A++SAD I I YDGK + + K
Sbjct: 27 EKPNYALKFTLEGHTEAVSSVKFSPNGEWLASSSADKVIIIWGAYDGKYEKTL------K 80
Query: 882 AHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDH 1061
H+ I ++WS DS+ L+SAS DKT K+WDV + T SN + C +
Sbjct: 81 GHNLEISDVAWSSDSSRLVSASDDKTLKIWDVRSGKCLKTLKGHSNYV---FCCNFNPPS 137
Query: 1062 LLSISLSGYINY-LDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWD 1238
L IS S + + + K L+ + HS + VH N S I SGS+DG WD
Sbjct: 138 NLIISGSFDESVKIWEVKTGKCLKTLSAHSDPVS--AVHFNCSGSLIVSGSYDGVCRIWD 195
Query: 1239 SETGENDSFAGKGHTNQVSRMTVDESGQ-LVSCSMDDTVRYTSLS----LRDYSG 1388
+ +G+ VS + +G+ ++ ++D+T++ S L+ Y+G
Sbjct: 196 AASGQCLKALVDDDNPPVSFVKFSPNGKYILIATLDNTLKLWDYSRGRCLKTYTG 250
Score = 72.8 bits (177), Expect = 1e-12
Identities = 57/230 (24%), Positives = 100/230 (43%), Gaps = 9/230 (3%)
Frame = +3
Query: 357 HAHQVVVAKYAPSGFYIASGDVSGKLRIW-------DTTQKEHLLKYEYQPFAGKIKDIA 515
H V K++P+G ++AS + IW + T K H L +I D+A
Sbjct: 40 HTEAVSSVKFSPNGEWLASSSADKVIIIWGAYDGKYEKTLKGHNL---------EISDVA 90
Query: 516 WTEDSKRIAVVGEGREKFGAVFLWD--SGSSVGEITGHNKVINSVDIKQSRPYRLATGSD 689
W+ DS R+ + + + +WD SG + + GH+ + + + +GS
Sbjct: 91 WSSDSSRLVSASDDK----TLKIWDVRSGKCLKTLKGHSNYVFCCNFNPPSNL-IISGSF 145
Query: 690 DNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSL 869
D +E K T+ HS V+ V F+ G+ + S DG I+D +G+ C
Sbjct: 146 DESVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGVCRIWDAASGQ--CLK 203
Query: 870 GGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSN 1019
+ + + +SP+ ++L A+ D T K+WD + + T+T N
Sbjct: 204 ALVDDDNPPVSFVKFSPNGKYILIATLDNTLKLWDYSRGRCLKTYTGHKN 253
Score = 67.0 bits (162), Expect = 7e-11
Identities = 60/243 (24%), Positives = 104/243 (42%), Gaps = 4/243 (1%)
Frame = +3
Query: 576 VFLWDS--GSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGD 749
+ +W + G + GHN I+ V S RL + SDD ++ K T+
Sbjct: 65 IIIWGAYDGKYEKTLKGHNLEISDV-AWSSDSSRLVSASDDKTLKIWDVRSGKCLKTLKG 123
Query: 750 HSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDST 929
HS +V C F+P N + S D + I++ KTG+ + +L AH + A+ ++ +
Sbjct: 124 HSNYVFCCNFNPPSNLIISGSFDESVKIWEVKTGKCLKTL---SAHSDPVSAVHFNCSGS 180
Query: 930 HLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLSGYINYLDKN 1109
++S S D ++WD + N + ++L +L + D +
Sbjct: 181 LIVSGSYDGVCRIWDAASGQCLKALVDDDNPPVSFVKFSPNGKYILIATLDNTLKLWDYS 240
Query: 1110 NPSKPLRVIKGHSKSIQCL--TVHKNGGKSYIYSGSHDGHINYWDSETGENDSFAGKGHT 1283
+ L+ GH C+ + GGK +I SGS D + W+ +T E +GHT
Sbjct: 241 R-GRCLKTYTGHKNEKYCVFASFSVTGGK-WIVSGSEDNLVYIWNLQTKEIVQKL-QGHT 297
Query: 1284 NQV 1292
+ V
Sbjct: 298 DVV 300
Score = 57.4 bits (137), Expect = 5e-08
Identities = 76/323 (23%), Positives = 135/323 (41%), Gaps = 24/323 (7%)
Frame = +3
Query: 1110 NPSKPLR---------VIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDS 1262
N SKP+ ++GH++++ + NG ++ S S D I W + G+ +
Sbjct: 20 NQSKPVSEKPNYALKFTLEGHTEAVSSVKFSPNG--EWLASSSADKVIIIWGAYDGKYEK 77
Query: 1263 FAGKGHTNQVSRMT-VDESGQLVSCSMDDTVRYTSLS----LRDYSGQG--VVKLEVQPK 1421
KGH ++S + +S +LVS S D T++ + L+ G V P
Sbjct: 78 TL-KGHNLEISDVAWSSDSSRLVSASDDKTLKIWDVRSGKCLKTLKGHSNYVFCCNFNPP 136
Query: 1422 CVAVGPGGYTVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVH--PGGETVAVGGADGNV 1595
+ G + V I ++ KC + +P V AVH G + G DG
Sbjct: 137 SNLIISGSFDESVKIWEV----KTGKCLKTLSAHSDP-VSAVHFNCSGSLIVSGSYDGVC 191
Query: 1596 RLYSIL-GSTLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVF 1772
R++ G LK + + PV+ V +S +G ++ + + ++ + G +
Sbjct: 192 RIWDAASGQCLK--ALVDDDNPPVSFVKFSPNGKYILIATLDNTLKLWDYSRGRCLKT-Y 248
Query: 1773 YGHHAKIVCLAWS---PDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWL 1943
GH + C+ S + SG D +VY+W L E K+Q H +S+
Sbjct: 249 TGHKNEKYCVFASFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISAACHP 307
Query: 1944 DEHTLVTTS--HDASVKEWTISY 2006
E+ + + + +D +VK WT +Y
Sbjct: 308 TENIIASAALGNDKTVKLWTSTY 330
>ref|NP_001014887.1| notchless protein homolog 1 [Bos taurus].
Length = 486
Score = 89.7 bits (221), Expect = 9e-18
Identities = 98/432 (22%), Positives = 163/432 (37%), Gaps = 14/432 (3%)
Frame = +3
Query: 612 ITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDG 791
+ GH++ + SV + Y LA+GS D F++ FT H +V + +SPDG
Sbjct: 111 LEGHSEAVISVAFSPTGKY-LASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 169
Query: 792 NRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISW-----SPDSTHLLSASGDK 956
+ A+ +GQI ++D TG++V H I A+SW +P+ ++ S+S D
Sbjct: 170 KKLASGCKNGQILLWDPSTGKQVGR--ALTGHSKWITALSWEPLHANPECRYVASSSKDG 227
Query: 957 TSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLSGYINYLDKNNPSKPLRVI 1136
+ +VWD T T
Sbjct: 228 SVRVWDTTAGRCERTLT------------------------------------------- 244
Query: 1137 KGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGE-NDSFAGKGH--------TNQ 1289
GH++S+ CL + GG +YS S D I W + G + G GH T+
Sbjct: 245 -GHAQSVTCL---RWGGDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDY 300
Query: 1290 VSRMTVDESGQLVSCSMDDTVRYTSLSLRDYSGQGVVKLEVQPKCVAVGPGGYTVVVCIG 1469
R E + + D L R S +V+ + P+ + G +T+ +
Sbjct: 301 ALRTGAFEPAEASVNAQDLRGSLQELKERALSRYNLVRGQ-GPERLVSGSDDFTLFLWSP 359
Query: 1470 QIVLLKDQRKCFSIDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGSTLKDEGKLLE 1649
+D++ + V P +A D +++L+ G T K L
Sbjct: 360 ----AEDKKPLARMTGHQALINQVVFSPDSRVIASASFDKSIKLWD--GRTGKYLASLRG 413
Query: 1650 AKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHF 1829
V +A+S D L + + V+ V + GH ++ + WSPD +
Sbjct: 414 HVAAVYQIAWSADSRLLVSGSSDSTLKVWDV-KAQKLSTDLPGHADEVYAVDWSPDGQRV 472
Query: 1830 ASGGMDMMVYVW 1865
ASGG D + +W
Sbjct: 473 ASGGKDKCLRIW 484
Score = 70.5 bits (171), Expect = 6e-12
Identities = 101/429 (23%), Positives = 172/429 (40%), Gaps = 13/429 (3%)
Frame = +3
Query: 357 HAHQVVVAKYAPSGFYIASGDVSGKLRIWD-TTQKEHLLKYEYQPFAGKIKDIAWTEDSK 533
H+ V+ ++P+G Y+ASG +R WD +T+ H + Q + I+W+ D K
Sbjct: 114 HSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPH---FTCQGHRHWVLSISWSPDGK 170
Query: 534 RIAVVGEGREKFGAVFLWD--SGSSVGE-ITGHNKVINSVDIK--QSRP--YRLATGSDD 692
++A K G + LWD +G VG +TGH+K I ++ + + P +A+ S D
Sbjct: 171 KLA----SGCKNGQILLWDPSTGKQVGRALTGHSKWITALSWEPLHANPECRYVASSSKD 226
Query: 693 NCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLG 872
++ + + T+ H++ V C+R+ DG + +AS D I ++ G +L
Sbjct: 227 GSVRVWDTTAGRCERTLTGHAQSVTCLRWGGDGLLY-SASQDRTIKVWRAHDGVLCRTLQ 285
Query: 873 GSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTF-TMGSNVLDQQLGCLW 1049
G H + ++ S D + L + ++ VN + + + L +
Sbjct: 286 G---HGHWVNTMALSTD--YALRTGAFEPAEA-SVNAQDLRGSLQELKERALSRYNLVRG 339
Query: 1050 QKDHLLSISLSGYINYL-DKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHI 1226
Q L + +L KPL + GH I + + I S S D I
Sbjct: 340 QGPERLVSGSDDFTLFLWSPAEDKKPLARMTGHQALINQVVFSPD--SRVIASASFDKSI 397
Query: 1227 NYWDSETGENDSFAGKGHTNQVSRMTVD-ESGQLVSCSMDDTVRYTSLSLRDYSGQGVVK 1403
WD TG+ + + +GH V ++ +S LVS S D T++ + +
Sbjct: 398 KLWDGRTGKYLA-SLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQK-------- 448
Query: 1404 LEVQPKCVAVGPGGYTVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAV--HPGGETVAVG 1577
S D PG+ EV AV P G+ VA G
Sbjct: 449 ---------------------------------LSTDLPGHADEVYAVDWSPDGQRVASG 475
Query: 1578 GADGNVRLY 1604
G D +R++
Sbjct: 476 GKDKCLRIW 484
>ref|NP_001092501.1| WD repeat-containing protein 51B [Bos taurus].
Length = 478
Score = 83.6 bits (205), Expect = 7e-16
Identities = 69/315 (21%), Positives = 131/315 (41%), Gaps = 5/315 (1%)
Frame = +3
Query: 324 DNPAVADIYTEHAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKI 503
++P + + H + ++P+G +A+G L +W + +Y
Sbjct: 6 EDPVLERYFKGHKAAITSVDFSPNGKQLATGSWDTFLMLWSLRPQARAFRYVGH------ 59
Query: 504 KDIAWTEDSKRIAVVGEGREKFGAVFLW--DSGSSVGEITGHNKVINSVDIKQSRPYRLA 677
KD+ + + + + + LW D E H + SVD + LA
Sbjct: 60 KDVITSVQFSPLGNLLASASRDRTIRLWIPDKRGKSSEFKAHTAPVRSVDFSADGQF-LA 118
Query: 678 TGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEK 857
+ S+D + +F +++ H+ +V C +FSPDG + S D I I+D T K
Sbjct: 119 SASEDKSIKVWNMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWD--TTNK 176
Query: 858 VCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQL 1037
C + G ++++P+ T + SA D T K+WD+ VN ++ + + S +
Sbjct: 177 QC-VNNFSDFVGFANFVAFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVHSG----GV 231
Query: 1038 GCLW---QKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSG 1208
C+ ++L++ S G + LD + + ++GH+ + TV + G SG
Sbjct: 232 NCVSFHPSGNYLITASSDGTLKILDLLE-GRLIYTLQGHTGPV--FTVSFSKGGELFTSG 288
Query: 1209 SHDGHINYWDSETGE 1253
D + W + E
Sbjct: 289 GADAQVLLWRTNFDE 303
Score = 65.1 bits (157), Expect = 2e-10
Identities = 55/212 (25%), Positives = 80/212 (37%)
Frame = +3
Query: 357 HAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKR 536
H H V AK++P G I S ++IWDTT K+ + + F G +A+ +
Sbjct: 143 HTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCV--NNFSDFVGFANFVAFNPNGTC 200
Query: 537 IAVVGEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEG 716
IA G V +WD V ++ H +V
Sbjct: 201 IASAGSDH----TVKIWDI--RVNKLLQHYQV---------------------------- 226
Query: 717 PPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGG 896
HS VNCV F P GN TAS+DG + I D G + +L G H G
Sbjct: 227 -----------HSGGVNCVSFHPSGNYLITASSDGTLKILDLLEGRLIYTLQG---HTGP 272
Query: 897 IYAISWSPDSTHLLSASGDKTSKVWDVNVNSV 992
++ +S+S S D +W N + +
Sbjct: 273 VFTVSFSKGGELFTSGGADAQVLLWRTNFDEL 304
Score = 55.5 bits (132), Expect = 2e-07
Identities = 62/271 (22%), Positives = 113/271 (41%), Gaps = 10/271 (3%)
Frame = +3
Query: 1203 SGSHDGHINYW-DSETGENDSFAGKGHTNQVSRMTVDESGQ-LVSCSMDDTVRYTSLSLR 1376
S S D I W + G++ F K HT V + GQ L S S D +++ ++ +
Sbjct: 77 SASRDRTIRLWIPDKRGKSSEF--KAHTAPVRSVDFSADGQFLASASEDKSIKVWNMYRQ 134
Query: 1377 DYSGQGVVKLEVQPKCVAVGPGGYTVVVCI-GQIVLLKD--QRKCFS--IDNPGYEPEVV 1541
+ + + +C P G +V C + + + D ++C + D G+ V
Sbjct: 135 RFL-YSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDFVGFA-NFV 192
Query: 1542 AVHPGGETVAVGGADGNVRLYSILGSTLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASK 1721
A +P G +A G+D V+++ I + L ++ G V V++ G +L +
Sbjct: 193 AFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQV--HSGGVNCVSFHPSGNYLITASSDG 250
Query: 1722 VVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHFASGGMDMMVYVWTLSDPETR---V 1892
+ + + +G + GH + +++S E F SGG D V +W + E V
Sbjct: 251 TLKILDLLEGRLIYTL-QGHTGPVFTVSFSKGGELFTSGGADAQVLLWRTNFDELNYKDV 309
Query: 1893 KIQDAHRLHHVSSLAWLDEHTLVTTSHDASV 1985
++ RLH S LD + H+ +
Sbjct: 310 SKRNLKRLHFDSPPHLLDIYPRTPHPHEGRI 340
>ref|XP_001251626.3| PREDICTED: WD repeat domain 51B-like, partial [Bos taurus].
Length = 371
Score = 83.6 bits (205), Expect = 7e-16
Identities = 69/315 (21%), Positives = 131/315 (41%), Gaps = 5/315 (1%)
Frame = +3
Query: 324 DNPAVADIYTEHAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKI 503
++P + + H + ++P+G +A+G L +W + +Y
Sbjct: 6 EDPVLERYFKGHKAAITSVDFSPNGKQLATGSWDTFLMLWSLRPQARAFRYVGH------ 59
Query: 504 KDIAWTEDSKRIAVVGEGREKFGAVFLW--DSGSSVGEITGHNKVINSVDIKQSRPYRLA 677
KD+ + + + + + LW D E H + SVD + LA
Sbjct: 60 KDVITSVQFSPLGNLLASASRDRTIRLWIPDKRGKSSEFKAHTAPVRSVDFSADGQF-LA 118
Query: 678 TGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEK 857
+ S+D + +F +++ H+ +V C +FSPDG + S D I I+D T K
Sbjct: 119 SASEDKSIKVWNMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWD--TTNK 176
Query: 858 VCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQL 1037
C + G ++++P+ T + SA D T K+WD+ VN ++ + + S +
Sbjct: 177 QC-VNNFSDFVGFANFVAFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVHSG----GV 231
Query: 1038 GCLW---QKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSG 1208
C+ ++L++ S G + LD + + ++GH+ + TV + G SG
Sbjct: 232 NCVSFHPSGNYLITASSDGTLKILDLLE-GRLIYTLQGHTGPV--FTVSFSKGGELFTSG 288
Query: 1209 SHDGHINYWDSETGE 1253
D + W + E
Sbjct: 289 GADAQVLLWRTNFDE 303
Score = 65.1 bits (157), Expect = 2e-10
Identities = 55/212 (25%), Positives = 80/212 (37%)
Frame = +3
Query: 357 HAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKR 536
H H V AK++P G I S ++IWDTT K+ + + F G +A+ +
Sbjct: 143 HTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCV--NNFSDFVGFANFVAFNPNGTC 200
Query: 537 IAVVGEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEG 716
IA G V +WD V ++ H +V
Sbjct: 201 IASAGSDH----TVKIWDI--RVNKLLQHYQV---------------------------- 226
Query: 717 PPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGG 896
HS VNCV F P GN TAS+DG + I D G + +L G H G
Sbjct: 227 -----------HSGGVNCVSFHPSGNYLITASSDGTLKILDLLEGRLIYTLQG---HTGP 272
Query: 897 IYAISWSPDSTHLLSASGDKTSKVWDVNVNSV 992
++ +S+S S D +W N + +
Sbjct: 273 VFTVSFSKGGELFTSGGADAQVLLWRTNFDEL 304
Score = 55.5 bits (132), Expect = 2e-07
Identities = 62/271 (22%), Positives = 113/271 (41%), Gaps = 10/271 (3%)
Frame = +3
Query: 1203 SGSHDGHINYW-DSETGENDSFAGKGHTNQVSRMTVDESGQ-LVSCSMDDTVRYTSLSLR 1376
S S D I W + G++ F K HT V + GQ L S S D +++ ++ +
Sbjct: 77 SASRDRTIRLWIPDKRGKSSEF--KAHTAPVRSVDFSADGQFLASASEDKSIKVWNMYRQ 134
Query: 1377 DYSGQGVVKLEVQPKCVAVGPGGYTVVVCI-GQIVLLKD--QRKCFS--IDNPGYEPEVV 1541
+ + + +C P G +V C + + + D ++C + D G+ V
Sbjct: 135 RFL-YSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDFVGFA-NFV 192
Query: 1542 AVHPGGETVAVGGADGNVRLYSILGSTLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASK 1721
A +P G +A G+D V+++ I + L ++ G V V++ G +L +
Sbjct: 193 AFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQV--HSGGVNCVSFHPSGNYLITASSDG 250
Query: 1722 VVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHFASGGMDMMVYVWTLSDPETR---V 1892
+ + + +G + GH + +++S E F SGG D V +W + E V
Sbjct: 251 TLKILDLLEGRLIYTL-QGHTGPVFTVSFSKGGELFTSGGADAQVLLWRTNFDELNYKDV 309
Query: 1893 KIQDAHRLHHVSSLAWLDEHTLVTTSHDASV 1985
++ RLH S LD + H+ +
Sbjct: 310 SKRNLKRLHFDSPPHLLDIYPRTPHPHEGRI 340
>ref|NP_001033186.1| WD repeat-containing protein 61 [Bos taurus].
Length = 305
Score = 81.3 bits (199), Expect = 3e-15
Identities = 59/199 (29%), Positives = 92/199 (46%)
Frame = +3
Query: 408 ASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKFGAVFLW 587
AS + +R+WD + + + P +A++ DS+ +A G K +F
Sbjct: 80 ASSSLDAHIRLWDLENGKQIKSIDAGPVDAWT--LAFSPDSQYLAT-GTHVGKVN-IFGV 135
Query: 588 DSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVN 767
+SG + K I S+ Y LA+G+ D F+ K T+ H+ +
Sbjct: 136 ESGKKEYSLDTRGKFILSIAYSPDGKY-LASGAIDGIINIFDIATGKLLHTLEGHAMPIR 194
Query: 768 CVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDSTHLLSAS 947
+ FSPD TAS DG I IYD + +L G H + +++ PD TH +S+S
Sbjct: 195 SLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG---HASWVLNVAFCPDDTHFVSSS 251
Query: 948 GDKTSKVWDVNVNSVVNTF 1004
DK+ KVWDV + V+TF
Sbjct: 252 SDKSVKVWDVGTRTCVHTF 270
Score = 56.6 bits (135), Expect = 9e-08
Identities = 35/112 (31%), Positives = 61/112 (54%)
Frame = +3
Query: 672 LATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTG 851
LATG+ F K ++++ +F+ + +SPDG A+ + DG I I+D TG
Sbjct: 121 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 180
Query: 852 EKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFT 1007
+ + +L G H I ++++SPDS L++AS D K++DV ++ T +
Sbjct: 181 KLLHTLEG---HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS 229
Score = 52.0 bits (123), Expect = 2e-06
Identities = 56/246 (22%), Positives = 104/246 (42%), Gaps = 15/246 (6%)
Frame = +3
Query: 1173 HKNGGKSYIYSGSHDGHINYWDSETGEND-SFAGKGHTNQVSRMTVDESGQL---VSCSM 1340
+K + +GS D + W + D ++ +GH Q+ ++VD S L S S+
Sbjct: 27 NKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGH--QLGVVSVDISHTLPIAASSSL 84
Query: 1341 DDTVRYTSLSLRDYSGQGVVKLEVQPK---CVAVGPGGYTVVVC--IGQIVL--LKDQRK 1499
D +R L +G+ + ++ P +A P + +G++ + ++ +K
Sbjct: 85 DAHIRLWDLE----NGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 140
Query: 1500 CFSIDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGSTLKDEGKLLEAKG----PVT 1667
+S+D G +A P G+ +A G DG + ++ I GKLL P+
Sbjct: 141 EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIA------TGKLLHTLEGHAMPIR 194
Query: 1668 DVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHFASGGMD 1847
+ +S D L + ++ V + GH + ++ +A+ PD+ HF S D
Sbjct: 195 SLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS-GHASWVLNVAFCPDDTHFVSSSSD 253
Query: 1848 MMVYVW 1865
V VW
Sbjct: 254 KSVKVW 259
>ref|NP_001157418.1| WD repeat-containing protein 38 [Bos taurus].
Length = 296
Score = 78.6 bits (192), Expect = 2e-14
Identities = 70/248 (28%), Positives = 107/248 (43%), Gaps = 8/248 (3%)
Frame = +3
Query: 357 HAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAG---KIKDIAWTED 527
H V +++P G AS +R+WD T + L Q G ++ ++++ D
Sbjct: 62 HKGPVRFCRFSPDGRLFASTSCDRTIRLWDATDAKCL-----QVLKGHQRSVETVSFSHD 116
Query: 528 SKRIAVVGEGREKFGAVFLWD--SGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCA 701
SK++A G + V LW+ SG + GH + S D S LATGS D+
Sbjct: 117 SKQLASGGWDKR----VMLWEVQSGQVLRHFVGHRDSVQSSDFAPSSDC-LATGSWDSTI 171
Query: 702 AFFE---GPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLG 872
++ G P F + H ++C+ +SP G A+ S D I+I+ T + L
Sbjct: 172 RMWDLRAGTPGIFHQELEGHRGNISCLCYSPSG-LLASGSWDKTIHIWKPSTRSLLIQL- 229
Query: 873 GSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQ 1052
K H + +I++SPD L SA KVWD N T VL+ C +
Sbjct: 230 --KGHITWVKSIAFSPDGQQLASAGYSHMVKVWDCNTGKCTETL---KGVLNVAHACAFM 284
Query: 1053 KDHLLSIS 1076
D L +S
Sbjct: 285 PDGKLLVS 292
Score = 71.6 bits (174), Expect = 3e-12
Identities = 63/220 (28%), Positives = 90/220 (40%), Gaps = 2/220 (0%)
Frame = +3
Query: 669 RLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKT 848
RL T S+D C +E + + + H V RFSPDG FA+ S D I ++D
Sbjct: 35 RLLTASEDGCVYGWETQSGRLLWRLRGHKGPVRFCRFSPDGRLFASTSCDRTIRLWDATD 94
Query: 849 GEKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLD 1028
+ + L K H + +S+S DS L S DK +W+V V+ F +G
Sbjct: 95 AKCLQVL---KGHQRSVETVSFSHDSKQLASGGWDKRVMLWEVQSGQVLRHF-VGHRDSV 150
Query: 1029 QQLGCLWQKDHLLSISLSGYINYLD--KNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIY 1202
Q D L + S I D P + ++GH +I CL +G +
Sbjct: 151 QSSDFAPSSDCLATGSWDSTIRMWDLRAGTPGIFHQELEGHRGNISCLCYSPSG---LLA 207
Query: 1203 SGSHDGHINYWDSETGENDSFAGKGHTNQVSRMTVDESGQ 1322
SGS D I+ W T + KGH V + GQ
Sbjct: 208 SGSWDKTIHIWKPST-RSLLIQLKGHITWVKSIAFSPDGQ 246
Score = 68.9 bits (167), Expect = 2e-11
Identities = 64/222 (28%), Positives = 89/222 (40%), Gaps = 11/222 (4%)
Frame = +3
Query: 744 GDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPD 923
G H VN FSPDG R TAS DG +Y ++ ++G + L G H G + +SPD
Sbjct: 18 GRHRGEVNSSAFSPDGQRLLTASEDGCVYGWETQSGRLLWRLRG---HKGPVRFCRFSPD 74
Query: 924 STHLLSASGDKTSKVWDVNVNSVVNTF--------TMGSNVLDQQLGC-LWQKDHLLSIS 1076
S S D+T ++WD + T+ + +QL W K +L
Sbjct: 75 GRLFASTSCDRTIRLWDATDAKCLQVLKGHQRSVETVSFSHDSKQLASGGWDKRVMLWEV 134
Query: 1077 LSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGEN 1256
SG + LR GH S+Q + + +GS D I WD G
Sbjct: 135 QSGQV-----------LRHFVGHRDSVQSSDFAPS--SDCLATGSWDSTIRMWDLRAGTP 181
Query: 1257 DSFAG--KGHTNQVSRMTVDESGQLVSCSMDDTVRYTSLSLR 1376
F +GH +S + SG L S S D T+ S R
Sbjct: 182 GIFHQELEGHRGNISCLCYSPSGLLASGSWDKTIHIWKPSTR 223
>ref|NP_001178436.1| apoptotic peptidase activating factor 1 [Bos taurus].
Length = 1238
Score = 75.9 bits (185), Expect = 1e-13
Identities = 111/488 (22%), Positives = 182/488 (37%), Gaps = 67/488 (13%)
Frame = +3
Query: 732 KFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAIS 911
+ + H+ V FS DG R A+ AD + ++ +TGEK+ + KAH+ + +
Sbjct: 597 RLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEI---KAHEDEVLCCA 653
Query: 912 WSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLSGYI 1091
+S D + + S DK K+W+ S++G +
Sbjct: 654 FSADDKFIATCSVDKKVKIWN---------------------------------SMTGEL 680
Query: 1092 NYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWD--SETGENDSF 1265
+R+ HS+ + C N + +GS+D + WD E N F
Sbjct: 681 -----------VRIYDEHSEQVNCCHFTNNSNHLLLATGSNDYFLKLWDLNQEECRNTMF 729
Query: 1266 AGKGHTNQVSRMTVDESGQ-LVSCSMDDTVRY---------TSLSLRDY---SGQGVVKL 1406
GHTN VS Q L SCS D T++ S++++ + S + L
Sbjct: 730 ---GHTNSVSHCRFSPDDQVLASCSADGTLKLWDVKSANERKSINVKQFFLNSEEPQEDL 786
Query: 1407 EVQPKCVAVGPGGYTVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVH----------PG 1556
EV KC + G ++V V L F I + G E+ H P
Sbjct: 787 EVIVKCCSWSADGAKIMVAAKNKVFL------FDIHSSGLLAEMHMGHHSAVQYCDFSPH 840
Query: 1557 GETVAVGGADGNVRLYSILGSTLKDEG-KLLEAKGP---VTDVAYSHDG-AFLA------ 1703
V + V L+S+ D G K+ + +G V V +S DG +FL
Sbjct: 841 NHLAVVALSQYCVELWSM------DSGLKVADCRGHLSWVHCVMFSPDGSSFLTSSDDQT 894
Query: 1704 --------VCDASKVVTVFSVADGYSENNVF---------------------YGHHAKIV 1796
VC S V + + EN V Y A++
Sbjct: 895 IRLWETKKVCKNSATVLKQEIDVVFQENEVTVLAVDNIRRLQLINGNTGQIDYLTEAQVS 954
Query: 1797 CLAWSPDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHR--LHHVSSLAWLDEHTLVTTS 1970
C SP ++ A GG D + + L + + ++ H+ + H+ A D TL+++S
Sbjct: 955 CCCLSPHLQYLAFGGEDGAIQILELLNNRI-FQSRNGHKTTVRHIQFTA--DGKTLISSS 1011
Query: 1971 HDASVKEW 1994
D++V+ W
Sbjct: 1012 DDSAVQIW 1019
Score = 65.9 bits (159), Expect = 1e-10
Identities = 120/569 (21%), Positives = 222/569 (39%), Gaps = 60/569 (10%)
Frame = +3
Query: 357 HAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKR 536
H V A ++ G IAS L+++ E LL E + ++ A++ D K
Sbjct: 603 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLL--EIKAHEDEVLCCAFSADDKF 660
Query: 537 IAVVGEGREKFGAVFLWDS--GSSVGEITGHNKVINSVDI-KQSRPYRLATGSDDNCAAF 707
IA ++ V +W+S G V H++ +N S LATGS+D
Sbjct: 661 IATCSVDKK----VKIWNSMTGELVRIYDEHSEQVNCCHFTNNSNHLLLATGSNDYFLKL 716
Query: 708 FEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLG----- 872
++ + + T+ H+ V+ RFSPD A+ SADG + ++D K+ + S+
Sbjct: 717 WDLNQEECRNTMFGHTNSVSHCRFSPDDQVLASCSADGTLKLWDVKSANERKSINVKQFF 776
Query: 873 -GSKAHDGGIYAI----SWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQL 1037
S+ + I SWS D ++ A+ +K ++D++ + ++ MG + Q
Sbjct: 777 LNSEEPQEDLEVIVKCCSWSADGAKIMVAAKNKVF-LFDIHSSGLLAEMHMGHHSAVQYC 835
Query: 1038 GCLWQKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHD 1217
+HL ++LS Y L + + +GH + C+ +G S + S D
Sbjct: 836 D-FSPHNHLAVVALSQYCVELWSMDSGLKVADCRGHLSWVHCVMFSPDG--SSFLTSSDD 892
Query: 1218 GHINYWDS-ETGENDSFAGK---------------------------GHTNQVSRMTVDE 1313
I W++ + +N + K G+T Q+ +T
Sbjct: 893 QTIRLWETKKVCKNSATVLKQEIDVVFQENEVTVLAVDNIRRLQLINGNTGQIDYLT--- 949
Query: 1314 SGQLVSCSMDDTVRYTSLSLRDYSGQGVVK-LEVQPKCVAVGPGGYTVVV------CIGQ 1472
Q+ C + ++Y + D G ++ LE+ + G+ V G+
Sbjct: 950 EAQVSCCCLSPHLQYLAFGGED----GAIQILELLNNRIFQSRNGHKTTVRHIQFTADGK 1005
Query: 1473 IVLLKDQRKCFSIDN-PGYEPEVVAVHPGGETV-----------AVGGADGNVRLYSILG 1616
++ I N +P + H ETV DG V++++I+
Sbjct: 1006 TLISSSDDSAVQIWNWQSEDPFFLQAHQ--ETVKDFRLLKNSRLLSWSFDGTVKVWNII- 1062
Query: 1617 STLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIV 1796
T + E + + V S D + A K ++S + S + GH +
Sbjct: 1063 -TRRIEKDFVCHQDTVLSCDISSDATKFSSTSADKTAKIWSF-ELLSPLHELRGHKGCVR 1120
Query: 1797 CLAWSPDNEHFASGGMDMMVYVWTLSDPE 1883
C ++S +N A+G + + +W +S+ E
Sbjct: 1121 CSSFSVNNTLLATGDDNGEIRIWNVSNGE 1149
>ref|NP_001033649.1| POC1 centriolar protein homolog A [Bos taurus].
Length = 407
Score = 75.9 bits (185), Expect = 1e-13
Identities = 69/307 (22%), Positives = 123/307 (40%), Gaps = 1/307 (0%)
Frame = +3
Query: 324 DNPAVADIYTEHAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKI 503
++P++ + H V ++ + +ASG + L +W + + FAG
Sbjct: 7 EDPSLERHFKGHRDAVTSVDFSLNTKQLASGSMDSCLMVWHMKPQTRAYR-----FAGHK 61
Query: 504 KDIAWTEDSKRIAVVGEG-REKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLAT 680
+ S ++ G R+K +++ + H + SV S T
Sbjct: 62 DAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFC-SDGQSFVT 120
Query: 681 GSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKV 860
SDD + KF F++ H +V C +FSPDG +AS D + ++D + E V
Sbjct: 121 ASDDKTVKVWSTHRQKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECV 180
Query: 861 CSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLG 1040
S H G + + + P T + +A D T KVWDV + ++ + + S ++ L
Sbjct: 181 HSY---CEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVN-ALS 236
Query: 1041 CLWQKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDG 1220
++L++ S + LD + L + GH + + G Y SG D
Sbjct: 237 FHPSGNYLVTASSDSTLKILDLME-GRLLYTLHGHQGPATTVAFSRTG--EYFASGGSDE 293
Query: 1221 HINYWDS 1241
+ W S
Sbjct: 294 QVMVWKS 300
Score = 62.8 bits (151), Expect = 1e-09
Identities = 61/248 (24%), Positives = 100/248 (40%), Gaps = 6/248 (2%)
Frame = +3
Query: 1140 GHSKSIQCLTVHKNGGKSYIYSGSHDGHINYW-DSETGENDSFAGKGHTNQVSRMTVDES 1316
GH ++ C+ +G + SGS D + W + GE+ F + HT V +
Sbjct: 59 GHKDAVTCVNFSPSG--HLLASGSRDKTVRIWVPNVKGESTVF--RAHTATVRSVHFCSD 114
Query: 1317 GQ-LVSCSMDDTVRYTSLSLRDYSGQGVVKLEVQPKCVAVGPGGYTVVVCIGQIVLL--- 1484
GQ V+ S D TV+ S + + + +C P G +V +
Sbjct: 115 GQSFVTASDDKTVKVWSTHRQKFLFSLSQHIN-WVRCAKFSPDGRLIVSASDDKTVKLWD 173
Query: 1485 KDQRKCF-SIDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGSTLKDEGKLLEAKGP 1661
K R+C S G V HP G +A G D V+++ + L +L A
Sbjct: 174 KTSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAA-- 231
Query: 1662 VTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHFASGG 1841
V +++ G +L + + + + +G + +GH +A+S E+FASGG
Sbjct: 232 VNALSFHPSGNYLVTASSDSTLKILDLMEGRLLYTL-HGHQGPATTVAFSRTGEYFASGG 290
Query: 1842 MDMMVYVW 1865
D V VW
Sbjct: 291 SDEQVMVW 298
Score = 62.0 bits (149), Expect = 2e-09
Identities = 53/234 (22%), Positives = 91/234 (38%), Gaps = 9/234 (3%)
Frame = +3
Query: 303 CVILRNIDNPAVADIYTEHAHQVVVAKYAPSGFYIASGDVSGKLRIW-------DTTQKE 461
C+++ ++ A + H V ++PSG +ASG +RIW T +
Sbjct: 42 CLMVWHMKPQTRAYRFAGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRA 101
Query: 462 HLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKFGAVFLWDSGSSVGEITGHNKVINS 641
H F + D K + V R+KF + ++ IN
Sbjct: 102 HTATVRSVHFCSDGQSFVTASDDKTVKVWSTHRQKF--------------LFSLSQHINW 147
Query: 642 VDIKQSRP--YRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASA 815
V + P + + SDD ++ + + +H FV V F P G A A
Sbjct: 148 VRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGM 207
Query: 816 DGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDV 977
D + ++D +T L + H + A+S+ P +L++AS D T K+ D+
Sbjct: 208 DNTVKVWDVRTHR---LLQHYQLHSAAVNALSFHPSGNYLVTASSDSTLKILDL 258
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 79,258,206
Number of extensions: 2201016
Number of successful extensions: 11563
Number of sequences better than 1.0e-05: 96
Number of HSP's gapped: 10723
Number of HSP's successfully gapped: 181
Length of query: 734
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 624
Effective length of database: 14,041,694
Effective search space: 8762017056
Effective search space used: 8762017056
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007604
(2204 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001124309.1| WD repeat domain 1 [Canis lupus familiaris]. 1221 0.0
Alignment gi|XP_532646.2| PREDICTED: similar to WD repeat domain 51B [Can... 87 9e-17
Alignment gi|XP_850117.1| PREDICTED: similar to WD repeat domain 5 [Canis... 82 2e-15
Alignment gi|XP_541857.2| PREDICTED: similar to WD repeat domain 51A isof... 82 3e-15
Alignment gi|XP_548262.2| PREDICTED: similar to Notchless homolog 1 (WD-r... 82 3e-15
Alignment gi|XP_536215.2| PREDICTED: similar to WD repeat domain 61 isofo... 81 4e-15
Alignment gi|XP_866627.1| PREDICTED: similar to F-box/WD-repeat protein 1... 73 1e-12
Alignment gi|XP_852961.1| PREDICTED: similar to F-box and WD-40 domain pr... 73 1e-12
Alignment gi|XP_866601.1| PREDICTED: similar to F-box and WD-40 domain pr... 73 1e-12
Alignment gi|XP_536431.2| PREDICTED: similar to F-box and WD-40 domain pr... 73 1e-12
>ref|NP_001124309.1| WD repeat domain 1 [Canis lupus familiaris].
Length = 606
Score = 1221 bits (3159), Expect = 0.0
Identities = 585/606 (96%), Positives = 600/606 (99%)
Frame = +3
Query: 189 MPYEIKKVFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVILRNIDNPAVADIYTEHAHQ 368
MPYEIKKVFASLPQVERGVSKI+GGDPKGNNFLYTNGKCVILRNIDNPA+ADIYTEHAHQ
Sbjct: 1 MPYEIKKVFASLPQVERGVSKILGGDPKGNNFLYTNGKCVILRNIDNPALADIYTEHAHQ 60
Query: 369 VVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV 548
VVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV
Sbjct: 61 VVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV 120
Query: 549 GEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFK 728
GEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFK
Sbjct: 121 GEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFK 180
Query: 729 FKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAI 908
FKFTIGDH+RFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVC+LGG KAHDGGIYAI
Sbjct: 181 FKFTIGDHNRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCALGGDKAHDGGIYAI 240
Query: 909 SWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLSGY 1088
SWSPDSTHLLSASGDKTSK+WDVNVNSVVNTFTMGS VLDQQLGCLWQKDHLLSISLSGY
Sbjct: 241 SWSPDSTHLLSASGDKTSKIWDVNVNSVVNTFTMGSTVLDQQLGCLWQKDHLLSISLSGY 300
Query: 1089 INYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFA 1268
INYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFA
Sbjct: 301 INYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFA 360
Query: 1269 GKGHTNQVSRMTVDESGQLVSCSMDDTVRYTSLSLRDYSGQGVVKLEVQPKCVAVGPGGY 1448
GKGHTNQVSRMTVDESGQLVSCSMDDTVRYT+L+LRDYSGQGVVK+++QPKCVAVGPGGY
Sbjct: 361 GKGHTNQVSRMTVDESGQLVSCSMDDTVRYTNLTLRDYSGQGVVKMDMQPKCVAVGPGGY 420
Query: 1449 TVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGSTLK 1628
VVVCIGQIVLLKDQ+KCFSIDNPGYEPEVVAVHP G+ VAVGG DGNVRLYSILG+TLK
Sbjct: 421 AVVVCIGQIVLLKDQKKCFSIDNPGYEPEVVAVHPSGDMVAVGGTDGNVRLYSILGTTLK 480
Query: 1629 DEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAW 1808
DEG++LEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAW
Sbjct: 481 DEGRVLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAW 540
Query: 1809 SPDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVK 1988
SPDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVK
Sbjct: 541 SPDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVK 600
Query: 1989 EWTISY 2006
EWTISY
Sbjct: 601 EWTISY 606
>ref|XP_532646.2| PREDICTED: similar to WD repeat domain 51B [Canis familiaris].
Length = 833
Score = 86.7 bits (213), Expect = 9e-17
Identities = 76/349 (21%), Positives = 133/349 (38%), Gaps = 2/349 (0%)
Frame = +3
Query: 309 ILRNIDNPAVADIYTEHAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQP 488
+ R ++P + + H + ++PSG +A+ L +W+ + +Y
Sbjct: 356 VTRISEDPVLERYFKGHKAAITSVDFSPSGKQLATASWDTFLMLWNCKPQARAFRYVGH- 414
Query: 489 FAGKIKDIAWTEDSKRIAVVGEGREKFGAVFLW--DSGSSVGEITGHNKVINSVDIKQSR 662
KD+ + + + + V LW D E H + SVD
Sbjct: 415 -----KDVVTSVQFSPLGNLLASASRDRTVRLWIPDKRGKSSEFKAHTAPVRSVDFSADG 469
Query: 663 PYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDG 842
+ LAT S+D + +F +++ H+ +V C +FSPDG + S D I I+D
Sbjct: 470 QF-LATASEDKSIKVWNMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWD- 527
Query: 843 KTGEKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNV 1022
T K C + G + ++P+ T + SA D T K+WD+ VN ++ + +
Sbjct: 528 -TTNKQC-VNNFSDSVGFANFVDFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQV---- 581
Query: 1023 LDQQLGCLWQKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIY 1202
HS + C++ H +G +YI
Sbjct: 582 ----------------------------------------HSGGVNCVSFHPSG--NYII 599
Query: 1203 SGSHDGHINYWDSETGENDSFAGKGHTNQVSRMTVDESGQLVSCSMDDT 1349
+ S DG + D G + +GHT V ++ + G+L S DT
Sbjct: 600 TASSDGTLKILDLLEGRL-IYTLQGHTGPVFTVSFSKGGELFSSGGADT 647
Score = 51.6 bits (122), Expect = 3e-06
Identities = 56/271 (20%), Positives = 110/271 (40%), Gaps = 9/271 (3%)
Frame = +3
Query: 1203 SGSHDGHINYW-DSETGENDSFAGKGHTNQVSRMTVDESGQLVSCSMDDTVRYTSLSLRD 1379
S S D + W + G++ F K HT V + GQ ++ + +D R
Sbjct: 432 SASRDRTVRLWIPDKRGKSSEF--KAHTAPVRSVDFSADGQFLATASEDKSIKVWNMYRQ 489
Query: 1380 YSGQGVVKLEVQPKCVAVGPGGYTVVVCI-GQIVLLKD--QRKCFS--IDNPGYEPEVVA 1544
+ + +C P G +V C + + + D ++C + D+ G+ V
Sbjct: 490 RFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFA-NFVD 548
Query: 1545 VHPGGETVAVGGADGNVRLYSILGSTLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASKV 1724
+P G +A G+D V+++ I + L ++ G V V++ G ++ +
Sbjct: 549 FNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQV--HSGGVNCVSFHPSGNYIITASSDGT 606
Query: 1725 VTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHFASGGMDMMVYVWTLSDPETRVK--- 1895
+ + + +G + GH + +++S E F+SGG D V +W + K
Sbjct: 607 LKILDLLEGRLIYTL-QGHTGPVFTVSFSKGGELFSSGGADTQVLLWRTNFDYLNCKDMI 665
Query: 1896 IQDAHRLHHVSSLAWLDEHTLVTTSHDASVK 1988
++ RLH SS +D + H+ ++
Sbjct: 666 KRNLKRLHFDSSPHLVDIYPRTPHPHEGKIE 696
>ref|XP_850117.1| PREDICTED: similar to WD repeat domain 5 [Canis familiaris].
Length = 334
Score = 82.4 bits (202), Expect = 2e-15
Identities = 63/173 (36%), Positives = 88/173 (50%), Gaps = 5/173 (2%)
Frame = +3
Query: 717 PPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYI---YDGKTGEKVCSLGGSKAH 887
P + KFT+ H++ V+ V+FSP+G A++SAD I I YDGK EK S H
Sbjct: 33 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTIS-----GH 86
Query: 888 DGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLW--QKDH 1061
GI ++WS DS L+SAS DKT K+WDV+ + T SN + C + Q +
Sbjct: 87 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV---FCCNFNPQSNL 143
Query: 1062 LLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDG 1220
++S S + D K L+ + HS + VH N S I S S+DG
Sbjct: 144 IVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVS--AVHFNRDGSLIVSSSYDG 193
Score = 68.6 bits (166), Expect = 2e-11
Identities = 56/227 (24%), Positives = 99/227 (43%), Gaps = 6/227 (2%)
Frame = +3
Query: 357 HAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGK--IKDIAWTEDS 530
H V K++P+G ++AS ++IW K+E K I D+AW+ DS
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDS 99
Query: 531 KRIAVVGEGREKFGAVFLWD--SGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAA 704
+ + + + +WD SG + + GH+ + + + + +GS D
Sbjct: 100 NLLVSASDDK----TLKIWDVSSGKCLKTLKGHSNYVFCCNF-NPQSNLIVSGSFDESVR 154
Query: 705 FFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKA 884
++ K T+ HS V+ V F+ DG+ ++S DG GKTG
Sbjct: 155 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC----GKTGNAASRCMKLIL 210
Query: 885 HDGG--IYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSN 1019
D + + +SP+ ++L+A+ D T K+WD + + T+T N
Sbjct: 211 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 257
Score = 68.2 bits (165), Expect = 3e-11
Identities = 65/262 (24%), Positives = 114/262 (43%), Gaps = 6/262 (2%)
Frame = +3
Query: 612 ITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDG 791
+ GH K ++SV + + LA+ S D + KF+ TI H ++ V +S D
Sbjct: 41 LAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 792 NRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVW 971
N +AS D + I+D +G+ + +L K H ++ +++P S ++S S D++ ++W
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTL---KGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156
Query: 972 DVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLSGYINYLDK--NNPSKPLRVIKGH 1145
DV + T S D + +D L +S S Y K N S+ +++I
Sbjct: 157 DVKTGKCLKTLPAHS---DPVSAVHFNRDGSLIVS-SSYDGLCGKTGNAASRCMKLILDD 212
Query: 1146 SKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFAGKGHTNQ----VSRMTVDE 1313
GK YI + + D + WD G+ GH N+ + +V
Sbjct: 213 DNPPVSFVKFSPNGK-YILAATLDNTLKLWDYSKGKCLK-TYTGHKNEKYCIFANFSVTG 270
Query: 1314 SGQLVSCSMDDTVRYTSLSLRD 1379
+VS S D+ V +L ++
Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKE 292
>ref|XP_541857.2| PREDICTED: similar to WD repeat domain 51A isoform 1 [Canis
familiaris].
Length = 406
Score = 81.6 bits (200), Expect = 3e-15
Identities = 72/307 (23%), Positives = 125/307 (40%), Gaps = 1/307 (0%)
Frame = +3
Query: 324 DNPAVADIYTEHAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKI 503
++P++ + H + ++ + +ASG + L +W + + FAG
Sbjct: 7 EDPSLERHFKGHRDAITSVDFSLNTKQLASGSMDSCLMVWHMKPQSRAYR-----FAGHK 61
Query: 504 KDIAWTEDSKRIAVVGEG-REKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLAT 680
+ S ++ G R+K +++ + H + SV S L T
Sbjct: 62 DAVTCVNFSPSGHLLASGSRDKTVRIWIPNVKGESTVFRAHTATVRSVHFC-SDGQSLVT 120
Query: 681 GSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKV 860
SDD + KF F++ H +V C RFSPDG +AS D + ++D + E V
Sbjct: 121 ASDDKTVKVWSTHRQKFLFSLSQHINWVRCARFSPDGRLIVSASDDKTVKLWDKTSRECV 180
Query: 861 CSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLG 1040
S H G + + + P T + +AS D T KVWDV + ++ + + S ++ L
Sbjct: 181 HSY---CEHGGFVTYVDFHPSGTCIAAASMDNTVKVWDVRTHRLLQHYQLHSAAVN-ALS 236
Query: 1041 CLWQKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDG 1220
++LL+ S + LD + L + GH + + G Y SG D
Sbjct: 237 FHPSGNYLLTASSDSTLKILDLME-GRLLYTLHGHQGPATTVAFSRTG--EYFASGGSDE 293
Query: 1221 HINYWDS 1241
+ W S
Sbjct: 294 QVMVWKS 300
Score = 65.9 bits (159), Expect = 2e-10
Identities = 55/234 (23%), Positives = 94/234 (40%), Gaps = 9/234 (3%)
Frame = +3
Query: 303 CVILRNIDNPAVADIYTEHAHQVVVAKYAPSGFYIASGDVSGKLRIW-------DTTQKE 461
C+++ ++ + A + H V ++PSG +ASG +RIW T +
Sbjct: 42 CLMVWHMKPQSRAYRFAGHKDAVTCVNFSPSGHLLASGSRDKTVRIWIPNVKGESTVFRA 101
Query: 462 HLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKFGAVFLWDSGSSVGEITGHNKVINS 641
H F + + D K + V R+KF + ++ IN
Sbjct: 102 HTATVRSVHFCSDGQSLVTASDDKTVKVWSTHRQKF--------------LFSLSQHINW 147
Query: 642 VDIKQSRP--YRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASA 815
V + P + + SDD ++ + + +H FV V F P G A AS
Sbjct: 148 VRCARFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEHGGFVTYVDFHPSGTCIAAASM 207
Query: 816 DGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDV 977
D + ++D +T L + H + A+S+ P +LL+AS D T K+ D+
Sbjct: 208 DNTVKVWDVRTHR---LLQHYQLHSAAVNALSFHPSGNYLLTASSDSTLKILDL 258
Score = 61.6 bits (148), Expect = 3e-09
Identities = 61/248 (24%), Positives = 100/248 (40%), Gaps = 6/248 (2%)
Frame = +3
Query: 1140 GHSKSIQCLTVHKNGGKSYIYSGSHDGHINYW-DSETGENDSFAGKGHTNQVSRMTVDES 1316
GH ++ C+ +G + SGS D + W + GE+ F + HT V +
Sbjct: 59 GHKDAVTCVNFSPSG--HLLASGSRDKTVRIWIPNVKGESTVF--RAHTATVRSVHFCSD 114
Query: 1317 GQ-LVSCSMDDTVRYTSLSLRDYSGQGVVKLEVQPKCVAVGPGGYTVVVCIGQIVLL--- 1484
GQ LV+ S D TV+ S + + + +C P G +V +
Sbjct: 115 GQSLVTASDDKTVKVWSTHRQKFLFSLSQHIN-WVRCARFSPDGRLIVSASDDKTVKLWD 173
Query: 1485 KDQRKCF-SIDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGSTLKDEGKLLEAKGP 1661
K R+C S G V HP G +A D V+++ + L +L A
Sbjct: 174 KTSRECVHSYCEHGGFVTYVDFHPSGTCIAAASMDNTVKVWDVRTHRLLQHYQLHSAA-- 231
Query: 1662 VTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHFASGG 1841
V +++ G +L + + + + +G + +GH +A+S E+FASGG
Sbjct: 232 VNALSFHPSGNYLLTASSDSTLKILDLMEGRLLYTL-HGHQGPATTVAFSRTGEYFASGG 290
Query: 1842 MDMMVYVW 1865
D V VW
Sbjct: 291 SDEQVMVW 298
>ref|XP_548262.2| PREDICTED: similar to Notchless homolog 1 (WD-repeat protein
HUSSY-07) [Canis familiaris].
Length = 468
Score = 81.6 bits (200), Expect = 3e-15
Identities = 91/425 (21%), Positives = 162/425 (38%), Gaps = 13/425 (3%)
Frame = +3
Query: 612 ITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDG 791
+ GH++ + SV + Y LA+GS D F++ FT H +V + +SPDG
Sbjct: 96 LEGHSEAVISVAFSPTGKY-LASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 154
Query: 792 NRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISW-----SPDSTHLLSASGDK 956
A+ +GQI ++D TG++V + H I +SW +P+ ++ S+S D
Sbjct: 155 KTLASGCKNGQILLWDPSTGKQVGRV--LAGHSKWITGLSWEPLHANPECRYMASSSKDG 212
Query: 957 TSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLSGYINYLDKNNPSKPLRVI 1136
+ +VWD + R++
Sbjct: 213 SVRVWDTTA--------------------------------------------GRCERIL 228
Query: 1137 KGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGE-NDSFAGKGHTNQVSRMTVD- 1310
GH++S+ CL + GG +YS S D I W + G + G GH ++ D
Sbjct: 229 TGHTQSVTCL---RWGGDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDY 285
Query: 1311 --ESGQLVSCSMDDTVRYTSLSLRDYSGQGVVKLEV----QPKCVAVGPGGYTVVVCIGQ 1472
+G + SL++ + + + + P+ + G +T+ +
Sbjct: 286 ALRTGAFEPAEASINAQDLQGSLQELKDRALRRYNLVRGQGPERLVSGSDDFTLFMWSP- 344
Query: 1473 IVLLKDQRKCFSIDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGSTLKDEGKLLEA 1652
+D++ + V P +A D +++L+ G T K L
Sbjct: 345 ---AEDKKPLARMTGHQALINQVLFSPDSRIIASASFDKSIKLWD--GRTGKYLASLRGH 399
Query: 1653 KGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHFA 1832
V +A+S D L + + V+ V ++ GH ++ + WSPD + A
Sbjct: 400 VAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLAADL-PGHADEVYAVDWSPDGQRVA 458
Query: 1833 SGGMD 1847
SGG D
Sbjct: 459 SGGKD 463
Score = 73.9 bits (180), Expect = 6e-13
Identities = 92/386 (23%), Positives = 154/386 (39%), Gaps = 12/386 (3%)
Frame = +3
Query: 879 KAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKD 1058
+ H + ++++SP +L S SGD T + WD++ + T + + L W D
Sbjct: 97 EGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWV---LSISWSPD 153
Query: 1059 H--LLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLT---VHKNGGKSYIYSGSHDGH 1223
L S +G I D + + RV+ GHSK I L+ +H N Y+ S S DG
Sbjct: 154 GKTLASGCKNGQILLWDPSTGKQVGRVLAGHSKWITGLSWEPLHANPECRYMASSSKDGS 213
Query: 1224 INYWDSETGENDSFAGKGHTNQVSRMTVDESGQLVSCSMDDTVRYTSLSLRDYSGQGVVK 1403
+ WD+ G + GHT V+ + G L S S D T++ + GV+
Sbjct: 214 VRVWDTTAGRCERIL-TGHTQSVTCLRWGGDGLLYSASQDRTIKVWR------AHDGVLC 266
Query: 1404 LEVQPKCVAVGPGGYTVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVHPGGETVAVGGA 1583
+Q G G + + + L D +++ +EP A
Sbjct: 267 RTLQ------GHGHW-----VNTMALSTD----YALRTGAFEP----------------A 295
Query: 1584 DGNVRLYSILGS--TLKDEG----KLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVA 1745
+ ++ + GS LKD L+ +GP V+ S D ++S A
Sbjct: 296 EASINAQDLQGSLQELKDRALRRYNLVRGQGPERLVSGSDDFTLF----------MWSPA 345
Query: 1746 DGYSENNVFYGHHAKIVCLAWSPDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHV 1925
+ GH A I + +SPD+ AS D + +W + ++ + V
Sbjct: 346 EDKKPLARMTGHQALINQVLFSPDSRIIASASFDKSIKLWDGRTGKYLASLRG--HVAAV 403
Query: 1926 SSLAW-LDEHTLVTTSHDASVKEWTI 2000
+AW D LV+ S D+++K W +
Sbjct: 404 YQIAWSADSRLLVSGSSDSTLKVWDV 429
Score = 62.4 bits (150), Expect = 2e-09
Identities = 99/430 (23%), Positives = 169/430 (39%), Gaps = 15/430 (3%)
Frame = +3
Query: 357 HAHQVVVAKYAPSGFYIASGDVSGKLRIWD-TTQKEHLLKYEYQPFAGKIKDIAWTEDSK 533
H+ V+ ++P+G Y+ASG +R WD +T+ H + Q + I+W+ D K
Sbjct: 99 HSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPH---FTCQGHRHWVLSISWSPDGK 155
Query: 534 RIAVVGEGREKFGAVFLWD--SGSSVGEI-TGHNKVINSVDIK--QSRP--YRLATGSDD 692
+A K G + LWD +G VG + GH+K I + + + P +A+ S D
Sbjct: 156 TLA----SGCKNGQILLWDPSTGKQVGRVLAGHSKWITGLSWEPLHANPECRYMASSSKD 211
Query: 693 NCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLG 872
++ + + + H++ V C+R+ DG + +AS D I ++ G +L
Sbjct: 212 GSVRVWDTTAGRCERILTGHTQSVTCLRWGGDGLLY-SASQDRTIKVWRAHDGVLCRTLQ 270
Query: 873 GSKAHDGGIYAISWSPDSTHLLSA--SGDKTSKVWDV--NVNSVVNTFTMGSNVLDQQLG 1040
G H + ++ S D A + + D+ ++ + + N++ Q
Sbjct: 271 G---HGHWVNTMALSTDYALRTGAFEPAEASINAQDLQGSLQELKDRALRRYNLVRGQ-- 325
Query: 1041 CLWQKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDG 1220
+ L+S S + KPL + GH I V + I S S D
Sbjct: 326 ---GPERLVSGSDDFTLFMWSPAEDKKPLARMTGHQALIN--QVLFSPDSRIIASASFDK 380
Query: 1221 HINYWDSETGENDSFAGKGHTNQVSRMTVD-ESGQLVSCSMDDTVRYTSLSLRDYSGQGV 1397
I WD TG+ + + +GH V ++ +S LVS S D T++ + +
Sbjct: 381 SIKLWDGRTGKYLA-SLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQK------ 433
Query: 1398 VKLEVQPKCVAVGPGGYTVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAV--HPGGETVA 1571
+ D PG+ EV AV P G+ VA
Sbjct: 434 -----------------------------------LAADLPGHADEVYAVDWSPDGQRVA 458
Query: 1572 VGGADGNVRL 1601
GG D +R+
Sbjct: 459 SGGKDKCLRM 468
>ref|XP_536215.2| PREDICTED: similar to WD repeat domain 61 isoform 1 [Canis
familiaris].
Length = 305
Score = 81.3 bits (199), Expect = 4e-15
Identities = 59/199 (29%), Positives = 92/199 (46%)
Frame = +3
Query: 408 ASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKFGAVFLW 587
AS + +R+WD + + + P +A++ DS+ +A G K +F
Sbjct: 80 ASSSLDAHIRLWDLDNGKQIKSIDAGPVDAWT--LAFSPDSQYLAT-GTHVGKVN-IFGV 135
Query: 588 DSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVN 767
+SG + K I S+ Y LA+G+ D F+ K T+ H+ +
Sbjct: 136 ESGKKEYSLDTRGKFILSIAYSPDGKY-LASGAIDGIINIFDIATGKLLHTLEGHAMPIR 194
Query: 768 CVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDSTHLLSAS 947
+ FSPD TAS DG I IYD + +L G H + +++ PD TH +S+S
Sbjct: 195 SLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG---HASWVLNVAFCPDDTHFVSSS 251
Query: 948 GDKTSKVWDVNVNSVVNTF 1004
DK+ KVWDV + V+TF
Sbjct: 252 SDKSVKVWDVGTRTCVHTF 270
Score = 56.6 bits (135), Expect = 1e-07
Identities = 35/112 (31%), Positives = 61/112 (54%)
Frame = +3
Query: 672 LATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTG 851
LATG+ F K ++++ +F+ + +SPDG A+ + DG I I+D TG
Sbjct: 121 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 180
Query: 852 EKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFT 1007
+ + +L G H I ++++SPDS L++AS D K++DV ++ T +
Sbjct: 181 KLLHTLEG---HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS 229
Score = 50.1 bits (118), Expect = 9e-06
Identities = 56/246 (22%), Positives = 103/246 (41%), Gaps = 15/246 (6%)
Frame = +3
Query: 1173 HKNGGKSYIYSGSHDGHINYWDSETGEND-SFAGKGHTNQVSRMTVDESGQL---VSCSM 1340
+K + +GS D + W D ++ +GH Q+ ++VD S L S S+
Sbjct: 27 NKKENSETVVTGSLDDLVKVWKWCDERLDLQWSLEGH--QLGVVSVDISHTLPIAASSSL 84
Query: 1341 DDTVRYTSLSLRDYSGQGVVKLEVQPK---CVAVGPGGYTVVVC--IGQIVL--LKDQRK 1499
D +R L +G+ + ++ P +A P + +G++ + ++ +K
Sbjct: 85 DAHIRLWDLD----NGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 140
Query: 1500 CFSIDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGSTLKDEGKLLEAKG----PVT 1667
+S+D G +A P G+ +A G DG + ++ I GKLL P+
Sbjct: 141 EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIA------TGKLLHTLEGHAMPIR 194
Query: 1668 DVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHFASGGMD 1847
+ +S D L + ++ V + GH + ++ +A+ PD+ HF S D
Sbjct: 195 SLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS-GHASWVLNVAFCPDDTHFVSSSSD 253
Query: 1848 MMVYVW 1865
V VW
Sbjct: 254 KSVKVW 259
>ref|XP_866627.1| PREDICTED: similar to F-box/WD-repeat protein 11 (F-box/WD-repeat
protein 1B) (F-box and WD-repeats protein beta-TrCP2)
isoform 8 [Canis familiaris].
Length = 542
Score = 72.8 bits (177), Expect = 1e-12
Identities = 74/294 (25%), Positives = 123/294 (41%), Gaps = 16/294 (5%)
Frame = +3
Query: 519 TEDSKRIAVVGEGREKF------GAVFLWDSGS--SVGEITGHNKVINSVDIKQSRPYRL 674
+E+SK + + EK ++ +WD S + +TGH SV Q +
Sbjct: 237 SENSKGVYCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTGHT---GSVLCLQYDERVI 293
Query: 675 ATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGE 854
TGS D+ ++ + T+ H+ V +RFS T S D I ++D +
Sbjct: 294 VTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFS--NGLMVTCSKDRSIAVWDMASAT 351
Query: 855 KVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQ 1034
+ H + + + D +++SASGD+T KVW + V T N +
Sbjct: 352 DITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTL----NGHKRG 405
Query: 1035 LGCLWQKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSH 1214
+ CL +D L+ S L LRV++GH + ++C+ I SG++
Sbjct: 406 IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR----IVSGAY 461
Query: 1215 DGHINYWDSETGENDSFAGK--------GHTNQVSRMTVDESGQLVSCSMDDTV 1352
DG I WD + + H+ +V R+ DE Q++S S DDT+
Sbjct: 462 DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF-QIISSSHDDTI 514
>ref|XP_852961.1| PREDICTED: similar to F-box and WD-40 domain protein 11 isoform 2
[Canis familiaris].
Length = 563
Score = 72.8 bits (177), Expect = 1e-12
Identities = 74/294 (25%), Positives = 123/294 (41%), Gaps = 16/294 (5%)
Frame = +3
Query: 519 TEDSKRIAVVGEGREKF------GAVFLWDSGS--SVGEITGHNKVINSVDIKQSRPYRL 674
+E+SK + + EK ++ +WD S + +TGH SV Q +
Sbjct: 258 SENSKGVYCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTGHT---GSVLCLQYDERVI 314
Query: 675 ATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGE 854
TGS D+ ++ + T+ H+ V +RFS T S D I ++D +
Sbjct: 315 VTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFS--NGLMVTCSKDRSIAVWDMASAT 372
Query: 855 KVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQ 1034
+ H + + + D +++SASGD+T KVW + V T N +
Sbjct: 373 DITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTL----NGHKRG 426
Query: 1035 LGCLWQKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSH 1214
+ CL +D L+ S L LRV++GH + ++C+ I SG++
Sbjct: 427 IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR----IVSGAY 482
Query: 1215 DGHINYWDSETGENDSFAGK--------GHTNQVSRMTVDESGQLVSCSMDDTV 1352
DG I WD + + H+ +V R+ DE Q++S S DDT+
Sbjct: 483 DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF-QIISSSHDDTI 535
>ref|XP_866601.1| PREDICTED: similar to F-box and WD-40 domain protein 11 isoform 7
[Canis familiaris].
Length = 531
Score = 72.8 bits (177), Expect = 1e-12
Identities = 74/294 (25%), Positives = 123/294 (41%), Gaps = 16/294 (5%)
Frame = +3
Query: 519 TEDSKRIAVVGEGREKF------GAVFLWDSGS--SVGEITGHNKVINSVDIKQSRPYRL 674
+E+SK + + EK ++ +WD S + +TGH SV Q +
Sbjct: 226 SENSKGVYCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTGHT---GSVLCLQYDERVI 282
Query: 675 ATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGE 854
TGS D+ ++ + T+ H+ V +RFS T S D I ++D +
Sbjct: 283 VTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFS--NGLMVTCSKDRSIAVWDMASAT 340
Query: 855 KVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQ 1034
+ H + + + D +++SASGD+T KVW + V T N +
Sbjct: 341 DITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTL----NGHKRG 394
Query: 1035 LGCLWQKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSH 1214
+ CL +D L+ S L LRV++GH + ++C+ I SG++
Sbjct: 395 IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR----IVSGAY 450
Query: 1215 DGHINYWDSETGENDSFAGK--------GHTNQVSRMTVDESGQLVSCSMDDTV 1352
DG I WD + + H+ +V R+ DE Q++S S DDT+
Sbjct: 451 DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF-QIISSSHDDTI 503
>ref|XP_536431.2| PREDICTED: similar to F-box and WD-40 domain protein 1B isoform B
isoform 1 [Canis familiaris].
Length = 529
Score = 72.8 bits (177), Expect = 1e-12
Identities = 74/294 (25%), Positives = 123/294 (41%), Gaps = 16/294 (5%)
Frame = +3
Query: 519 TEDSKRIAVVGEGREKF------GAVFLWDSGS--SVGEITGHNKVINSVDIKQSRPYRL 674
+E+SK + + EK ++ +WD S + +TGH SV Q +
Sbjct: 224 SENSKGVYCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTGHT---GSVLCLQYDERVI 280
Query: 675 ATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGE 854
TGS D+ ++ + T+ H+ V +RFS T S D I ++D +
Sbjct: 281 VTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFS--NGLMVTCSKDRSIAVWDMASAT 338
Query: 855 KVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQ 1034
+ H + + + D +++SASGD+T KVW + V T N +
Sbjct: 339 DITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTL----NGHKRG 392
Query: 1035 LGCLWQKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSH 1214
+ CL +D L+ S L LRV++GH + ++C+ I SG++
Sbjct: 393 IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR----IVSGAY 448
Query: 1215 DGHINYWDSETGENDSFAGK--------GHTNQVSRMTVDESGQLVSCSMDDTV 1352
DG I WD + + H+ +V R+ DE Q++S S DDT+
Sbjct: 449 DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF-QIISSSHDDTI 501
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 82,797,872
Number of extensions: 2264294
Number of successful extensions: 12637
Number of sequences better than 1.0e-05: 124
Number of HSP's gapped: 11595
Number of HSP's successfully gapped: 203
Length of query: 734
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 624
Effective length of database: 15,207,544
Effective search space: 9489507456
Effective search space used: 9489507456
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007604
(2204 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035845.1| WD repeat-containing protein 1 [Mus musculus]. 1210 0.0
Alignment gi|NP_543124.1| WD repeat-containing protein 5 [Mus musculus]. 92 1e-18
Alignment gi|NP_663406.2| notchless protein homolog 1 [Mus musculus]. 86 2e-16
Alignment gi|NP_081389.1| WD repeat-containing protein 5B [Mus musculus]. 83 8e-16
Alignment gi|NP_001020546.1| WD repeat-containing protein 61 isoform a [M... 82 2e-15
Alignment gi|NP_075680.1| WD repeat-containing protein 61 isoform a [Mus ... 82 2e-15
Alignment gi|NP_082016.1| POC1 centriolar protein homolog B [Mus musculus]. 80 5e-15
Alignment gi|NP_001020547.1| WD repeat-containing protein 61 isoform b [M... 76 1e-13
Alignment gi|NP_081630.2| POC1 centriolar protein homolog A [Mus musculus]. 76 1e-13
Alignment gi|NP_083963.1| WD repeat-containing protein 38 [Mus musculus]. 74 5e-13
>ref|NP_035845.1| WD repeat-containing protein 1 [Mus musculus].
Length = 606
Score = 1210 bits (3131), Expect = 0.0
Identities = 579/606 (95%), Positives = 601/606 (99%)
Frame = +3
Query: 189 MPYEIKKVFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVILRNIDNPAVADIYTEHAHQ 368
MPYEIKKVFASLPQVERGVSKI+GGDPKG++FLYTNGKCVILRNIDNPA+ADIYTEHAHQ
Sbjct: 1 MPYEIKKVFASLPQVERGVSKILGGDPKGDHFLYTNGKCVILRNIDNPAIADIYTEHAHQ 60
Query: 369 VVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV 548
VVVAKYAPSGFYIASGD+SGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV
Sbjct: 61 VVVAKYAPSGFYIASGDISGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV 120
Query: 549 GEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFK 728
GEGREKFGAVFLWD+GSSVGEITGHNKVINSVDIKQ+RPYRLATGSDDNCAAFFEGPPFK
Sbjct: 121 GEGREKFGAVFLWDTGSSVGEITGHNKVINSVDIKQTRPYRLATGSDDNCAAFFEGPPFK 180
Query: 729 FKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAI 908
FKFTIGDHSRFVNCVRFSPDGNRFATASADGQI+IYDGKTGEKVC+LG SKAHDGGIYAI
Sbjct: 181 FKFTIGDHSRFVNCVRFSPDGNRFATASADGQIFIYDGKTGEKVCALGESKAHDGGIYAI 240
Query: 909 SWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLSGY 1088
SWSPDSTHLLSASGDKTSK+WDVNVNSVV+TF MGSNVLDQQLGCLWQKDHLLSISLSGY
Sbjct: 241 SWSPDSTHLLSASGDKTSKIWDVNVNSVVSTFPMGSNVLDQQLGCLWQKDHLLSISLSGY 300
Query: 1089 INYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFA 1268
INYLDKNNPSKPLRVIKGHSKSIQCLTVH+NGGKSYIYSGSHDGHINYWDSETGENDSF+
Sbjct: 301 INYLDKNNPSKPLRVIKGHSKSIQCLTVHRNGGKSYIYSGSHDGHINYWDSETGENDSFS 360
Query: 1269 GKGHTNQVSRMTVDESGQLVSCSMDDTVRYTSLSLRDYSGQGVVKLEVQPKCVAVGPGGY 1448
GKGHTNQVSRMTV+ES QLVSCSMDDTVRYT+L+LRDYSGQGVVKL+VQPKCVAVGPGGY
Sbjct: 361 GKGHTNQVSRMTVNESEQLVSCSMDDTVRYTNLTLRDYSGQGVVKLDVQPKCVAVGPGGY 420
Query: 1449 TVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGSTLK 1628
TVVVCIGQIVLLKDQ+KCFSIDNPGYEPEVVAVHPGG+TVAVGG DGNVR+YSIL STLK
Sbjct: 421 TVVVCIGQIVLLKDQKKCFSIDNPGYEPEVVAVHPGGDTVAVGGTDGNVRVYSILASTLK 480
Query: 1629 DEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAW 1808
DEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAW
Sbjct: 481 DEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAW 540
Query: 1809 SPDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVK 1988
SPDNEHFASGGMDMMVYVWTLSDPET+VKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVK
Sbjct: 541 SPDNEHFASGGMDMMVYVWTLSDPETKVKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVK 600
Query: 1989 EWTISY 2006
EWTI+Y
Sbjct: 601 EWTITY 606
>ref|NP_543124.1| WD repeat-containing protein 5 [Mus musculus].
Length = 334
Score = 92.4 bits (228), Expect = 1e-18
Identities = 75/234 (32%), Positives = 116/234 (49%), Gaps = 10/234 (4%)
Frame = +3
Query: 717 PPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYI---YDGKTGEKVCSLGGSKAH 887
P + KFT+ H++ V+ V+FSP+G A++SAD I I YDGK EK S H
Sbjct: 33 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTIS-----GH 86
Query: 888 DGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLW--QKDH 1061
GI ++WS DS L+SAS DKT K+WDV+ + T SN + C + Q +
Sbjct: 87 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV---FCCNFNPQSNL 143
Query: 1062 LLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDS 1241
++S S + D K L+ + HS + VH N S I S S+DG WD+
Sbjct: 144 IVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVS--AVHFNRDGSLIVSSSYDGLCRIWDT 200
Query: 1242 ETGENDSFAGKGHTNQVSRMTVDESGQ-LVSCSMDDTVRYTSLS----LRDYSG 1388
+G+ VS + +G+ +++ ++D+T++ S L+ Y+G
Sbjct: 201 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 254
Score = 73.2 bits (178), Expect = 8e-13
Identities = 73/316 (23%), Positives = 128/316 (40%), Gaps = 4/316 (1%)
Frame = +3
Query: 357 HAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGK--IKDIAWTEDS 530
H V K++P+G ++AS ++IW K+E K I D+AW+ DS
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDS 99
Query: 531 KRIAVVGEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFF 710
N ++++ D K + + +++G
Sbjct: 100 -------------------------------NLLVSASDDKTLKIWDVSSG--------- 119
Query: 711 EGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHD 890
K T+ HS +V C F+P N + S D + I+D KTG+ + +L AH
Sbjct: 120 -----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL---PAHS 171
Query: 891 GGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLS 1070
+ A+ ++ D + ++S+S D ++WD + T N + ++L+
Sbjct: 172 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 231
Query: 1071 ISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVH--KNGGKSYIYSGSHDGHINYWDSE 1244
+L + D + K L+ GH C+ + GGK +I SGS D + W+ +
Sbjct: 232 ATLDNTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQ 289
Query: 1245 TGENDSFAGKGHTNQV 1292
T E +GHT+ V
Sbjct: 290 TKEIVQKL-QGHTDVV 304
Score = 67.4 bits (163), Expect = 4e-11
Identities = 63/262 (24%), Positives = 113/262 (43%), Gaps = 6/262 (2%)
Frame = +3
Query: 612 ITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDG 791
+ GH K ++SV + + LA+ S D + KF+ TI H ++ V +S D
Sbjct: 41 LAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 792 NRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVW 971
N +AS D + I+D +G+ + +L K H ++ +++P S ++S S D++ ++W
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTL---KGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156
Query: 972 DVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLS--GYINYLDKNNPSKPLRVIKGH 1145
DV + T S D + +D L +S S G D + +I
Sbjct: 157 DVKTGKCLKTLPAHS---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 213
Query: 1146 SKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFAGKGHTNQ----VSRMTVDE 1313
+ + + NG YI + + D + WD G+ GH N+ + +V
Sbjct: 214 NPPVSFVKFSPNG--KYILAATLDNTLKLWDYSKGKCLK-TYTGHKNEKYCIFANFSVTG 270
Query: 1314 SGQLVSCSMDDTVRYTSLSLRD 1379
+VS S D+ V +L ++
Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKE 292
Score = 50.8 bits (120), Expect = 4e-06
Identities = 73/316 (23%), Positives = 126/316 (39%), Gaps = 19/316 (6%)
Frame = +3
Query: 1104 KNNPSKPLRVIK----GHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFAG 1271
K P KP +K GH+K++ + NG ++ S S D I W + G+ +
Sbjct: 27 KPTPVKPNYALKFTLAGHTKAVSSVKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTIS 84
Query: 1272 KGHTNQVSRMT-VDESGQLVSCSMDDTVRYTSLS----LRDYSGQG--VVKLEVQPKCVA 1430
GH +S + +S LVS S D T++ +S L+ G V P+
Sbjct: 85 -GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 143
Query: 1431 VGPGGYTVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVH--PGGETVAVGGADGNVRLY 1604
+ G + V I + KC P + V AVH G + DG R++
Sbjct: 144 IVSGSFDESVRIWDV----KTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198
Query: 1605 SIL-GSTLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGH 1781
G LK + + PV+ V +S +G ++ + ++ + G + GH
Sbjct: 199 DTASGQCLKT--LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGH 255
Query: 1782 HAKIVCLAWS---PDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEH 1952
+ C+ + + SG D +VY+W L E K+Q H +S+ E+
Sbjct: 256 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISTACHPTEN 314
Query: 1953 TLVTTS--HDASVKEW 1994
+ + + +D ++K W
Sbjct: 315 IIASAALENDKTIKLW 330
>ref|NP_663406.2| notchless protein homolog 1 [Mus musculus].
Length = 485
Score = 85.5 bits (210), Expect = 2e-16
Identities = 98/433 (22%), Positives = 167/433 (38%), Gaps = 15/433 (3%)
Frame = +3
Query: 612 ITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDG 791
+ GH++ + SV + Y LA+GS D F++ FT H +V + +SPDG
Sbjct: 110 LEGHSEAVISVAFSPTGKY-LASGSGDTTVRFWDLSTETPHFTCKGHRHWVLSISWSPDG 168
Query: 792 NRFATASADGQIYIYDGKTGEKV-CSLGGSKAHDGGIYAISW-----SPDSTHLLSASGD 953
+ A+ +GQ+ ++D TG +V +L G H I +SW +P+ ++ S+S D
Sbjct: 169 KKLASGCKNGQVLLWDPSTGLQVGRTLTG---HSKWITGLSWEPLHMNPECRYVASSSKD 225
Query: 954 KTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLSGYINYLDKNNPSKPLRV 1133
+ +VWD + R+
Sbjct: 226 GSVRVWDTTA--------------------------------------------GRCERI 241
Query: 1134 IKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGE-NDSFAGKGH--------TN 1286
+ GH++S+ CL + GG +YS S D I W + G + G GH T+
Sbjct: 242 LTGHTQSVTCL---RWGGDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTD 298
Query: 1287 QVSRMTVDESGQLVSCSMDDTVRYTSLSLRDYSGQGVVKLEVQPKCVAVGPGGYTVVVCI 1466
R E + + D L R S +V+ + P+ + G +T+ +
Sbjct: 299 YALRTGAFEPAEATVNAQDLQGSLKELKERASSRYNLVRGQ-GPERLVSGSDDFTLFLWS 357
Query: 1467 GQIVLLKDQRKCFSIDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGSTLKDEGKLL 1646
+D++ + V P VA D +++L+ G T K L
Sbjct: 358 P----AEDKKPLARMTGHQALINQVLFSPDSRIVASASFDKSIKLWD--GRTGKYLASLR 411
Query: 1647 EAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEH 1826
V +A+S D L + + V+ V ++ GH ++ + WSPD +
Sbjct: 412 GHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLATDL-PGHADEVYAVDWSPDGQR 470
Query: 1827 FASGGMDMMVYVW 1865
ASGG D + +W
Sbjct: 471 VASGGKDKCLRIW 483
Score = 65.9 bits (159), Expect = 1e-10
Identities = 100/431 (23%), Positives = 173/431 (40%), Gaps = 15/431 (3%)
Frame = +3
Query: 357 HAHQVVVAKYAPSGFYIASGDVSGKLRIWD-TTQKEHLLKYEYQPFAGKIKDIAWTEDSK 533
H+ V+ ++P+G Y+ASG +R WD +T+ H ++ + + I+W+ D K
Sbjct: 113 HSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCKGHRHW---VLSISWSPDGK 169
Query: 534 RIAVVGEGREKFGAVFLWD--SGSSVGE-ITGHNKVINSVD---IKQSRPYR-LATGSDD 692
++A K G V LWD +G VG +TGH+K I + + + R +A+ S D
Sbjct: 170 KLA----SGCKNGQVLLWDPSTGLQVGRTLTGHSKWITGLSWEPLHMNPECRYVASSSKD 225
Query: 693 NCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLG 872
++ + + + H++ V C+R+ DG + +AS D I ++ G +L
Sbjct: 226 GSVRVWDTTAGRCERILTGHTQSVTCLRWGGDGLLY-SASQDRTIKVWRAHDGVLCRTLQ 284
Query: 873 GSKAHDGGIYAISWSPDSTHLLSA--SGDKTSKVWDV--NVNSVVNTFTMGSNVLDQQLG 1040
G H + ++ S D A + T D+ ++ + + N++ Q
Sbjct: 285 G---HGHWVNTMALSTDYALRTGAFEPAEATVNAQDLQGSLKELKERASSRYNLVRGQ-- 339
Query: 1041 CLWQKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDG 1220
+ L+S S + KPL + GH I V + + S S D
Sbjct: 340 ---GPERLVSGSDDFTLFLWSPAEDKKPLARMTGHQALIN--QVLFSPDSRIVASASFDK 394
Query: 1221 HINYWDSETGENDSFAGKGHTNQVSRMTVD-ESGQLVSCSMDDTVRYTSLSLRDYSGQGV 1397
I WD TG+ + + +GH V ++ +S LVS S D T++ + +
Sbjct: 395 SIKLWDGRTGKYLA-SLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQK------ 447
Query: 1398 VKLEVQPKCVAVGPGGYTVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAV--HPGGETVA 1571
+ D PG+ EV AV P G+ VA
Sbjct: 448 -----------------------------------LATDLPGHADEVYAVDWSPDGQRVA 472
Query: 1572 VGGADGNVRLY 1604
GG D +R++
Sbjct: 473 SGGKDKCLRIW 483
>ref|NP_081389.1| WD repeat-containing protein 5B [Mus musculus].
Length = 328
Score = 83.2 bits (204), Expect = 8e-16
Identities = 67/230 (29%), Positives = 111/230 (48%), Gaps = 6/230 (2%)
Frame = +3
Query: 717 PPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGG 896
P + + T+ HS ++ V+FSP+G A+++AD I I+ G +L G H
Sbjct: 27 PNYALRLTLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGNCKKTLYG---HSLE 83
Query: 897 IYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSIS 1076
I ++WS DS+ L+SAS DKT KVWD+ + T S D C + L +S
Sbjct: 84 ISDVAWSSDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHS---DFVFCCDFNPPSNLIVS 140
Query: 1077 LSGYINY-LDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGE 1253
S + + + K L+ + HS I + + NG S I SGS+DG WD+ +G+
Sbjct: 141 GSFDESVKIWEVKTGKCLKTLSAHSDPISAVNFNCNG--SLIVSGSYDGLCRIWDAASGQ 198
Query: 1254 NDSFAGKGHTNQVSRMTVDESGQ-LVSCSMDDTVRYTSLS----LRDYSG 1388
VS + +G+ +++ ++D+T++ S L+ Y+G
Sbjct: 199 CLRTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTG 248
Score = 76.3 bits (186), Expect = 1e-13
Identities = 57/228 (25%), Positives = 107/228 (46%), Gaps = 7/228 (3%)
Frame = +3
Query: 357 HAHQVVVAKYAPSGFYIASGDVSGKLRIW---DTTQKEHLLKYEYQPFAGKIKDIAWTED 527
H+ + K++P+G ++AS + IW D K+ L + + I D+AW+ D
Sbjct: 38 HSAAISSVKFSPNGEWLASSAADALIIIWGAYDGNCKKTLYGHSLE-----ISDVAWSSD 92
Query: 528 SKRIAVVGEGREKFGAVFLWD--SGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCA 701
S R+ + + + +WD SG + + GH+ + D + +GS D
Sbjct: 93 SSRLVSASDDK----TLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNL-IVSGSFDESV 147
Query: 702 AFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSK 881
+E K T+ HS ++ V F+ +G+ + S DG I+D +G+ + +L
Sbjct: 148 KIWEVKTGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLRTL---- 203
Query: 882 AHDGG--IYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSN 1019
A +G + + +SP+ ++L+A+ D T K+WD + + T+T N
Sbjct: 204 ADEGNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKN 251
Score = 53.5 bits (127), Expect = 7e-07
Identities = 74/319 (23%), Positives = 130/319 (40%), Gaps = 21/319 (6%)
Frame = +3
Query: 1104 KNNPSKP---LRV-IKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFAG 1271
+ P KP LR+ + GHS +I + NG ++ S + D I W + G N
Sbjct: 21 EEEPQKPNYALRLTLAGHSAAISSVKFSPNG--EWLASSAADALIIIWGAYDG-NCKKTL 77
Query: 1272 KGHTNQVSRMT-VDESGQLVSCSMDDTVRYTSLS----LRDYSGQG--VVKLEVQPKCVA 1430
GH+ ++S + +S +LVS S D T++ + L+ G V + P
Sbjct: 78 YGHSLEISDVAWSSDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNL 137
Query: 1431 VGPGGYTVVVCIGQIVLLKDQRKCFSIDNPGYEP-EVVAVHPGGETVAVGGADGNVRLYS 1607
+ G + V I ++ KC + +P V + G + G DG R++
Sbjct: 138 IVSGSFDESVKIWEV----KTGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWD 193
Query: 1608 ILGS----TLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFY 1775
TL DEG PV+ V +S +G ++ + ++ + G +
Sbjct: 194 AASGQCLRTLADEGN-----PPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKT-YT 247
Query: 1776 GHHAKIVCLAWS---PDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLD 1946
GH + CL S + SG D MVY+W L E ++Q H +S+
Sbjct: 248 GHKNEKYCLFASFSVTGRKWVVSGSEDNMVYIWNLQTKEIVQRLQ-GHTDVVISAACHPT 306
Query: 1947 EHTLVTTS--HDASVKEWT 1997
++ + + + +D ++K W+
Sbjct: 307 KNIIASAALENDKTIKVWS 325
>ref|NP_001020546.1| WD repeat-containing protein 61 isoform a [Mus musculus].
Length = 305
Score = 81.6 bits (200), Expect = 2e-15
Identities = 58/199 (29%), Positives = 92/199 (46%)
Frame = +3
Query: 408 ASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKFGAVFLW 587
AS + +R+WD + + + P +A++ DS+ +A G K +F
Sbjct: 80 ASSSLDAHIRLWDLENGKQMKSIDAGPVDAWT--LAFSPDSQYLAT-GTHMGKVN-IFGV 135
Query: 588 DSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVN 767
+SG + K I S+ Y LA+G+ D F+ K T+ H+ +
Sbjct: 136 ESGKKEYSLDTRGKFILSIAYSPDGKY-LASGAIDGIINIFDIATGKLLHTLEGHAMPIR 194
Query: 768 CVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDSTHLLSAS 947
+ FSPD TAS DG I IYD + +L G H + +++ PD TH +S+S
Sbjct: 195 SLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG---HASWVLNVAFCPDDTHFVSSS 251
Query: 948 GDKTSKVWDVNVNSVVNTF 1004
DK+ KVWDV + ++TF
Sbjct: 252 SDKSVKVWDVGTRTCIHTF 270
Score = 56.6 bits (135), Expect = 8e-08
Identities = 35/112 (31%), Positives = 61/112 (54%)
Frame = +3
Query: 672 LATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTG 851
LATG+ F K ++++ +F+ + +SPDG A+ + DG I I+D TG
Sbjct: 121 LATGTHMGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 180
Query: 852 EKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFT 1007
+ + +L G H I ++++SPDS L++AS D K++DV ++ T +
Sbjct: 181 KLLHTLEG---HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS 229
>ref|NP_075680.1| WD repeat-containing protein 61 isoform a [Mus musculus].
Length = 305
Score = 81.6 bits (200), Expect = 2e-15
Identities = 58/199 (29%), Positives = 92/199 (46%)
Frame = +3
Query: 408 ASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKFGAVFLW 587
AS + +R+WD + + + P +A++ DS+ +A G K +F
Sbjct: 80 ASSSLDAHIRLWDLENGKQMKSIDAGPVDAWT--LAFSPDSQYLAT-GTHMGKVN-IFGV 135
Query: 588 DSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVN 767
+SG + K I S+ Y LA+G+ D F+ K T+ H+ +
Sbjct: 136 ESGKKEYSLDTRGKFILSIAYSPDGKY-LASGAIDGIINIFDIATGKLLHTLEGHAMPIR 194
Query: 768 CVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDSTHLLSAS 947
+ FSPD TAS DG I IYD + +L G H + +++ PD TH +S+S
Sbjct: 195 SLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG---HASWVLNVAFCPDDTHFVSSS 251
Query: 948 GDKTSKVWDVNVNSVVNTF 1004
DK+ KVWDV + ++TF
Sbjct: 252 SDKSVKVWDVGTRTCIHTF 270
Score = 56.6 bits (135), Expect = 8e-08
Identities = 35/112 (31%), Positives = 61/112 (54%)
Frame = +3
Query: 672 LATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTG 851
LATG+ F K ++++ +F+ + +SPDG A+ + DG I I+D TG
Sbjct: 121 LATGTHMGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 180
Query: 852 EKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFT 1007
+ + +L G H I ++++SPDS L++AS D K++DV ++ T +
Sbjct: 181 KLLHTLEG---HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS 229
>ref|NP_082016.1| POC1 centriolar protein homolog B [Mus musculus].
Length = 476
Score = 80.5 bits (197), Expect = 5e-15
Identities = 72/311 (23%), Positives = 128/311 (41%), Gaps = 6/311 (1%)
Frame = +3
Query: 321 IDNPAVADIYTEHAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGK 500
+++P + + H + A ++P+ IA+ L +W K H Y Y
Sbjct: 5 LEDPILERSFKGHKAAITSADFSPNCKQIATASWDTFLMLWSL--KPHARAYRYVGHKDV 62
Query: 501 IKDIAWTEDSKRIAVVGEGREKFGAVFLW--DSGSSVGEITGHNKVINSVDIKQSRPYRL 674
+ + ++ +A R V LW D E H + SVD L
Sbjct: 63 VTSLQFSPQGNLLASASRDR----TVRLWVLDRKGKSSEFKAHTAPVRSVDFSADGQL-L 117
Query: 675 ATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGE 854
T S+D + +F +++ H+ +V C +FSPDG + S D I I+D T
Sbjct: 118 VTASEDKSIKVWSMFRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWD--TTN 175
Query: 855 KVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTF---TMGSNVL 1025
K C + G + ++P+ T + SA D K+WD+ +N ++ + + G N L
Sbjct: 176 KQC-VNNFSDSVGFANFVDFNPNGTCIASAGSDHAVKIWDIRMNKLLQHYQVHSCGVNCL 234
Query: 1026 D-QQLGCLWQKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIY 1202
LG + L++ S G + LD + + ++GH+ + ++ K+G +
Sbjct: 235 SFHPLG-----NSLVTASSDGTVKMLDLIE-GRLIYTLQGHTGPVFTVSFSKDG--ELLT 286
Query: 1203 SGSHDGHINYW 1235
SG D + W
Sbjct: 287 SGGADAQVLIW 297
Score = 61.6 bits (148), Expect = 2e-09
Identities = 53/208 (25%), Positives = 78/208 (37%)
Frame = +3
Query: 357 HAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKR 536
H H V AK++P G I S ++IWDTT K+ + + G + + +
Sbjct: 143 HTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCV--NNFSDSVGFANFVDFNPNGTC 200
Query: 537 IAVVGEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEG 716
IA G AV +WD NK++ +
Sbjct: 201 IASAGSDH----AVKIWDIRM--------NKLLQHYQV---------------------- 226
Query: 717 PPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGG 896
HS VNC+ F P GN TAS+DG + + D G + +L G H G
Sbjct: 227 -----------HSCGVNCLSFHPLGNSLVTASSDGTVKMLDLIEGRLIYTLQG---HTGP 272
Query: 897 IYAISWSPDSTHLLSASGDKTSKVWDVN 980
++ +S+S D L S D +W N
Sbjct: 273 VFTVSFSKDGELLTSGGADAQVLIWRTN 300
Score = 51.6 bits (122), Expect = 3e-06
Identities = 67/293 (22%), Positives = 120/293 (40%), Gaps = 14/293 (4%)
Frame = +3
Query: 1140 GHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSET-GENDSFAGKGHTNQVSRMTVDES 1316
GH + L G + + S S D + W + G++ F K HT V +
Sbjct: 58 GHKDVVTSLQFSPQG--NLLASASRDRTVRLWVLDRKGKSSEF--KAHTAPVRSVDFSAD 113
Query: 1317 GQL-VSCSMDDTVRYTSLSLRDYSGQGVVKLEVQPKCVAVGPGGYTVVVCI-GQIVLLKD 1490
GQL V+ S D +++ S+ R + + +C P G +V C + + + D
Sbjct: 114 GQLLVTASEDKSIKVWSM-FRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWD 172
Query: 1491 --QRKCFS--IDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGSTLKDEGKLLEAKG 1658
++C + D+ G+ V +P G +A G+D V+++ I + L ++
Sbjct: 173 TTNKQCVNNFSDSVGFA-NFVDFNPNGTCIASAGSDHAVKIWDIRMNKLLQHYQVHSCG- 230
Query: 1659 PVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHFASG 1838
V +++ G L + V + + +G + GH + +++S D E SG
Sbjct: 231 -VNCLSFHPLGNSLVTASSDGTVKMLDLIEGRLIYTL-QGHTGPVFTVSFSKDGELLTSG 288
Query: 1839 GMDMMVYVWTLS-------DPETRVKIQDAHRLHHVSSLAWLDEHTLVTTSHD 1976
G D V +W + DP+ +K RLH +S LD + SH+
Sbjct: 289 GADAQVLIWRTNFIHLHCKDPKRNLK-----RLHFEASPHLLDIYPRSPHSHE 336
>ref|NP_001020547.1| WD repeat-containing protein 61 isoform b [Mus musculus].
Length = 207
Score = 75.9 bits (185), Expect = 1e-13
Identities = 52/165 (31%), Positives = 80/165 (48%)
Frame = +3
Query: 510 IAWTEDSKRIAVVGEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSD 689
+A++ DS+ +A G K +F +SG + K I S+ Y LA+G+
Sbjct: 14 LAFSPDSQYLAT-GTHMGKVN-IFGVESGKKEYSLDTRGKFILSIAYSPDGKY-LASGAI 70
Query: 690 DNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSL 869
D F+ K T+ H+ + + FSPD TAS DG I IYD + +L
Sbjct: 71 DGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL 130
Query: 870 GGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTF 1004
G H + +++ PD TH +S+S DK+ KVWDV + ++TF
Sbjct: 131 SG---HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCIHTF 172
Score = 56.6 bits (135), Expect = 8e-08
Identities = 35/112 (31%), Positives = 61/112 (54%)
Frame = +3
Query: 672 LATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTG 851
LATG+ F K ++++ +F+ + +SPDG A+ + DG I I+D TG
Sbjct: 23 LATGTHMGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 82
Query: 852 EKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFT 1007
+ + +L G H I ++++SPDS L++AS D K++DV ++ T +
Sbjct: 83 KLLHTLEG---HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS 131
>ref|NP_081630.2| POC1 centriolar protein homolog A [Mus musculus].
Length = 405
Score = 75.9 bits (185), Expect = 1e-13
Identities = 66/306 (21%), Positives = 123/306 (40%)
Frame = +3
Query: 324 DNPAVADIYTEHAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKI 503
++P++ + H V ++ + ++ASG + L IW K Y + +
Sbjct: 7 EDPSLERHFKGHRDAVTCVDFSLNTKHLASGSMDSTLMIWH--MKPQSRAYRFTGHKDAV 64
Query: 504 KDIAWTEDSKRIAVVGEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATG 683
+ ++ +A R+K +++ + H + SV S L T
Sbjct: 65 TCVNFSPSGHLLA--SGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFC-SDGQSLVTA 121
Query: 684 SDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVC 863
SDD + +F F++ H +V C +FSPDG +AS D + ++D + E +
Sbjct: 122 SDDKTVKVWSTHRQRFLFSLTQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECIH 181
Query: 864 SLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGC 1043
S H G + + + P T + +A D T KVWD + ++ + + S ++ L
Sbjct: 182 SY---CEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDARTHRLLQHYQLHSAAVN-ALSF 237
Query: 1044 LWQKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGH 1223
++L++ S + LD + L + GH + + G Y SG D
Sbjct: 238 HPSGNYLITASSDSTLKILDLME-GRLLYTLHGHQGPATTVAFSRTG--EYFASGGSDEQ 294
Query: 1224 INYWDS 1241
+ W S
Sbjct: 295 VMVWKS 300
Score = 65.9 bits (159), Expect = 1e-10
Identities = 75/335 (22%), Positives = 120/335 (35%), Gaps = 6/335 (1%)
Frame = +3
Query: 879 KAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKD 1058
K H + + +S ++ HL S S D T +W + S FT
Sbjct: 16 KGHRDAVTCVDFSLNTKHLASGSMDSTLMIWHMKPQSRAYRFT----------------- 58
Query: 1059 HLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYW- 1235
GH ++ C+ +G + SGS D + W
Sbjct: 59 ---------------------------GHKDAVTCVNFSPSG--HLLASGSRDKTVRIWV 89
Query: 1236 DSETGENDSFAGKGHTNQVSRMTVDESGQ-LVSCSMDDTVRYTSLSLRDYSGQGVVKLEV 1412
+ GE+ F + HT V + GQ LV+ S D TV+ S + + +
Sbjct: 90 PNVKGESTVF--RAHTATVRSVHFCSDGQSLVTASDDKTVKVWSTHRQRFLFSLTQHIN- 146
Query: 1413 QPKCVAVGPGGYTVVVCIGQIVLL---KDQRKCF-SIDNPGYEPEVVAVHPGGETVAVGG 1580
+C P G +V + K R+C S G V HP G +A G
Sbjct: 147 WVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECIHSYCEHGGFVTYVDFHPSGTCIAAAG 206
Query: 1581 ADGNVRLYSILGSTLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSE 1760
D V+++ L +L A V +++ G +L + + + + +G
Sbjct: 207 MDNTVKVWDARTHRLLQHYQLHSAA--VNALSFHPSGNYLITASSDSTLKILDLMEGRLL 264
Query: 1761 NNVFYGHHAKIVCLAWSPDNEHFASGGMDMMVYVW 1865
+ +GH +A+S E+FASGG D V VW
Sbjct: 265 YTL-HGHQGPATTVAFSRTGEYFASGGSDEQVMVW 298
Score = 59.7 bits (143), Expect = 9e-09
Identities = 59/253 (23%), Positives = 86/253 (33%), Gaps = 38/253 (15%)
Frame = +3
Query: 348 YTEHAHQVVVAKYAPSGFYIASGDVSGKLRIW-------DTTQKEHLLKYEYQPFAGKIK 506
+T H V ++PSG +ASG +RIW T + H F +
Sbjct: 57 FTGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQ 116
Query: 507 DIAWTEDSKRIAVVGEGREKF-----------------------------GAVFLWDSGS 599
+ D K + V R++F V LWD S
Sbjct: 117 SLVTASDDKTVKVWSTHRQRFLFSLTQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTS 176
Query: 600 S--VGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCV 773
+ H + VD S A G D N ++ + HS VN +
Sbjct: 177 RECIHSYCEHGGFVTYVDFHPSGTCIAAAGMD-NTVKVWDARTHRLLQHYQLHSAAVNAL 235
Query: 774 RFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGD 953
F P GN TAS+D + I D G + +L G H G +++S + S D
Sbjct: 236 SFHPSGNYLITASSDSTLKILDLMEGRLLYTLHG---HQGPATTVAFSRTGEYFASGGSD 292
Query: 954 KTSKVWDVNVNSV 992
+ VW N + V
Sbjct: 293 EQVMVWKSNFDIV 305
>ref|NP_083963.1| WD repeat-containing protein 38 [Mus musculus].
Length = 303
Score = 73.9 bits (180), Expect = 5e-13
Identities = 60/214 (28%), Positives = 94/214 (43%), Gaps = 11/214 (5%)
Frame = +3
Query: 744 GDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPD 923
G H VNC FSPDG TAS DG +Y++ K+G + L G H G + + +SPD
Sbjct: 23 GQHHGEVNCSAFSPDGRTLLTASDDGCVYVWGTKSGRLLWRLAG---HRGPVKSCCFSPD 79
Query: 924 STHLLSASGDKTSKVWDVNVNSVVNTF--------TMGSNVLDQQLGC-LWQKDHLLSIS 1076
+ S+S D + ++WDV + ++ T+ + +QL W K ++
Sbjct: 80 GRLIASSSSDHSIRLWDVARSKCLHVLKGHQRSVETVSFSPDSKQLASGGWDKRAIVWEV 139
Query: 1077 LSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWD--SETG 1250
SG + + ++ GH SIQ + +GS D ++ WD + T
Sbjct: 140 QSG-----------RRVHLLVGHCDSIQSSDFSPTSDS--LATGSWDSTVHIWDLRASTP 186
Query: 1251 ENDSFAGKGHTNQVSRMTVDESGQLVSCSMDDTV 1352
+GHT +S + SG L S S D T+
Sbjct: 187 VVSYHNLEGHTGNISCLCYSASGLLASGSWDKTI 220
Score = 71.6 bits (174), Expect = 2e-12
Identities = 65/245 (26%), Positives = 108/245 (44%), Gaps = 5/245 (2%)
Frame = +3
Query: 357 HAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKE--HLLKYEYQPFAGKIKDIAWTEDS 530
H V ++P G IAS +R+WD + + H+LK + ++ ++++ DS
Sbjct: 67 HRGPVKSCCFSPDGRLIASSSSDHSIRLWDVARSKCLHVLKGHQR----SVETVSFSPDS 122
Query: 531 KRIAVVGEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFF 710
K++A G +K V+ SG V + GH I S D + LATGS D+ +
Sbjct: 123 KQLA--SGGWDKRAIVWEVQSGRRVHLLVGHCDSIQSSDFSPTSD-SLATGSWDSTVHIW 179
Query: 711 E---GPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSK 881
+ P + H+ ++C+ +S G A+ S D I ++ T L K
Sbjct: 180 DLRASTPVVSYHNLEGHTGNISCLCYSASG-LLASGSWDKTICVWKPTTNNLPLQL---K 235
Query: 882 AHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDH 1061
H + ++++SPD L SA +T KVWD + T +LD C++ D
Sbjct: 236 GHTIWVNSLAFSPDELKLASAGYSRTVKVWDCLTGKCLETL---KGMLDVAHACIFTPDG 292
Query: 1062 LLSIS 1076
L +S
Sbjct: 293 KLLVS 297
Score = 64.7 bits (156), Expect = 3e-10
Identities = 54/217 (24%), Positives = 91/217 (41%), Gaps = 2/217 (0%)
Frame = +3
Query: 348 YTEHAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTED 527
Y +H +V + ++P G + + G + +W T K L + G +K ++ D
Sbjct: 22 YGQHHGEVNCSAFSPDGRTLLTASDDGCVYVWGT--KSGRLLWRLAGHRGPVKSCCFSPD 79
Query: 528 SKRIAVVGEGREKFGAVFLWDSGSS--VGEITGHNKVINSVDIKQSRPYRLATGSDDNCA 701
+ IA ++ LWD S + + GH + + +V +LA+G D A
Sbjct: 80 GRLIASSSSDH----SIRLWDVARSKCLHVLKGHQRSVETVSFSPDSK-QLASGGWDKRA 134
Query: 702 AFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSK 881
+E + + H + FSP + AT S D ++I+D + V S +
Sbjct: 135 IVWEVQSGRRVHLLVGHCDSIQSSDFSPTSDSLATGSWDSTVHIWDLRASTPVVSYHNLE 194
Query: 882 AHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSV 992
H G I + +S S L S S DKT VW N++
Sbjct: 195 GHTGNISCLCYSA-SGLLASGSWDKTICVWKPTTNNL 230
Score = 55.1 bits (131), Expect = 2e-07
Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 8/161 (4%)
Frame = +3
Query: 1542 AVHPGGETVAVGGADGNVRLYSILGSTLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASK 1721
A P G T+ DG V ++ L +L +GPV +S DG +A +
Sbjct: 33 AFSPDGRTLLTASDDGCVYVWGTKSGRLL--WRLAGHRGPVKSCCFSPDGRLIASSSSDH 90
Query: 1722 VVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHFASGGMDMMVYVWTLSDPETRVKIQ 1901
+ ++ VA + V GH + +++SPD++ ASGG D VW ++Q
Sbjct: 91 SIRLWDVARSKCLH-VLKGHQRSVETVSFSPDSKQLASGGWDKRAIVW---------EVQ 140
Query: 1902 DAHRLH----HVSSLAWLD----EHTLVTTSHDASVKEWTI 2000
R+H H S+ D +L T S D++V W +
Sbjct: 141 SGRRVHLLVGHCDSIQSSDFSPTSDSLATGSWDSTVHIWDL 181
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 68,011,970
Number of extensions: 1806434
Number of successful extensions: 9519
Number of sequences better than 1.0e-05: 84
Number of HSP's gapped: 8679
Number of HSP's successfully gapped: 157
Length of query: 734
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 625
Effective length of database: 12,343,635
Effective search space: 7714771875
Effective search space used: 7714771875
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007604
(2204 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [S... 92 9e-19
Alignment gi|XP_003358840.1| PREDICTED: WD repeat-containing protein 5B-l... 89 8e-18
Alignment gi|XP_003358201.1| PREDICTED: notchless protein homolog 1 [Sus ... 87 5e-17
Alignment gi|XP_001927037.1| PREDICTED: WD repeat-containing protein 61 [... 81 2e-15
Alignment gi|XP_003353713.1| PREDICTED: WD repeat-containing protein 38-l... 77 4e-14
Alignment gi|XP_001927805.1| PREDICTED: WD repeat-containing protein 38-l... 77 4e-14
Alignment gi|XP_003360782.1| PREDICTED: POC1 centriolar protein homolog B... 76 7e-14
Alignment gi|XP_003132294.2| PREDICTED: POC1 centriolar protein homolog A... 74 3e-13
Alignment gi|XP_003353667.1| PREDICTED: LOW QUALITY PROTEIN: u4/U6 small ... 72 1e-12
Alignment gi|XP_003362067.1| PREDICTED: f-box/WD repeat-containing protei... 70 5e-12
>ref|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [Sus scrofa].
Length = 334
Score = 92.4 bits (228), Expect = 9e-19
Identities = 75/234 (32%), Positives = 116/234 (49%), Gaps = 10/234 (4%)
Frame = +3
Query: 717 PPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYI---YDGKTGEKVCSLGGSKAH 887
P + KFT+ H++ V+ V+FSP+G A++SAD I I YDGK EK S H
Sbjct: 33 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTIS-----GH 86
Query: 888 DGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLW--QKDH 1061
GI ++WS DS L+SAS DKT K+WDV+ + T SN + C + Q +
Sbjct: 87 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV---FCCNFNPQSNL 143
Query: 1062 LLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDS 1241
++S S + D K L+ + HS + VH N S I S S+DG WD+
Sbjct: 144 IVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVS--AVHFNRDGSLIVSSSYDGLCRIWDT 200
Query: 1242 ETGENDSFAGKGHTNQVSRMTVDESGQ-LVSCSMDDTVRYTSLS----LRDYSG 1388
+G+ VS + +G+ +++ ++D+T++ S L+ Y+G
Sbjct: 201 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 254
Score = 73.2 bits (178), Expect = 6e-13
Identities = 73/316 (23%), Positives = 128/316 (40%), Gaps = 4/316 (1%)
Frame = +3
Query: 357 HAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGK--IKDIAWTEDS 530
H V K++P+G ++AS ++IW K+E K I D+AW+ DS
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDS 99
Query: 531 KRIAVVGEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFF 710
N ++++ D K + + +++G
Sbjct: 100 -------------------------------NLLVSASDDKTLKIWDVSSG--------- 119
Query: 711 EGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHD 890
K T+ HS +V C F+P N + S D + I+D KTG+ + +L AH
Sbjct: 120 -----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL---PAHS 171
Query: 891 GGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLS 1070
+ A+ ++ D + ++S+S D ++WD + T N + ++L+
Sbjct: 172 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 231
Query: 1071 ISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVH--KNGGKSYIYSGSHDGHINYWDSE 1244
+L + D + K L+ GH C+ + GGK +I SGS D + W+ +
Sbjct: 232 ATLDNTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQ 289
Query: 1245 TGENDSFAGKGHTNQV 1292
T E +GHT+ V
Sbjct: 290 TKEIVQKL-QGHTDVV 304
Score = 67.4 bits (163), Expect = 3e-11
Identities = 63/262 (24%), Positives = 113/262 (43%), Gaps = 6/262 (2%)
Frame = +3
Query: 612 ITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDG 791
+ GH K ++SV + + LA+ S D + KF+ TI H ++ V +S D
Sbjct: 41 LAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 792 NRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVW 971
N +AS D + I+D +G+ + +L K H ++ +++P S ++S S D++ ++W
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTL---KGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156
Query: 972 DVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLS--GYINYLDKNNPSKPLRVIKGH 1145
DV + T S D + +D L +S S G D + +I
Sbjct: 157 DVKTGKCLKTLPAHS---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 213
Query: 1146 SKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFAGKGHTNQ----VSRMTVDE 1313
+ + + NG YI + + D + WD G+ GH N+ + +V
Sbjct: 214 NPPVSFVKFSPNG--KYILAATLDNTLKLWDYSKGKCLK-TYTGHKNEKYCIFANFSVTG 270
Query: 1314 SGQLVSCSMDDTVRYTSLSLRD 1379
+VS S D+ V +L ++
Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKE 292
Score = 50.8 bits (120), Expect = 3e-06
Identities = 73/316 (23%), Positives = 126/316 (39%), Gaps = 19/316 (6%)
Frame = +3
Query: 1104 KNNPSKPLRVIK----GHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFAG 1271
K P KP +K GH+K++ + NG ++ S S D I W + G+ +
Sbjct: 27 KPTPVKPNYALKFTLAGHTKAVSSVKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTIS 84
Query: 1272 KGHTNQVSRMT-VDESGQLVSCSMDDTVRYTSLS----LRDYSGQG--VVKLEVQPKCVA 1430
GH +S + +S LVS S D T++ +S L+ G V P+
Sbjct: 85 -GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 143
Query: 1431 VGPGGYTVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVH--PGGETVAVGGADGNVRLY 1604
+ G + V I + KC P + V AVH G + DG R++
Sbjct: 144 IVSGSFDESVRIWDV----KTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198
Query: 1605 SIL-GSTLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGH 1781
G LK + + PV+ V +S +G ++ + ++ + G + GH
Sbjct: 199 DTASGQCLKT--LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGH 255
Query: 1782 HAKIVCLAWS---PDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEH 1952
+ C+ + + SG D +VY+W L E K+Q H +S+ E+
Sbjct: 256 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISTACHPTEN 314
Query: 1953 TLVTTS--HDASVKEW 1994
+ + + +D ++K W
Sbjct: 315 IIASAALENDKTIKLW 330
>ref|XP_003358840.1| PREDICTED: WD repeat-containing protein 5B-like [Sus scrofa].
Length = 330
Score = 89.4 bits (220), Expect = 8e-18
Identities = 73/235 (31%), Positives = 114/235 (48%), Gaps = 9/235 (3%)
Frame = +3
Query: 711 EGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYI---YDGKTGEKVCSLGGSK 881
E P + KFT+ H+ V+ V+FSP+G A++SAD I I YDGK + + K
Sbjct: 27 EKPNYTLKFTLVGHTEAVSSVKFSPNGEWLASSSADKVIIIWGAYDGKYEKAL------K 80
Query: 882 AHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDH 1061
H I ++WS DS L+SAS DKT K+WDV V + T SN + C +
Sbjct: 81 GHSLEISDVAWSSDSGRLVSASDDKTLKIWDVRVGKCLKTLKGHSNYV---FCCNFNPPS 137
Query: 1062 LLSISLSGYINY-LDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWD 1238
L IS S + + + + L+ + HS + VH N S I SGS+DG WD
Sbjct: 138 NLIISGSFDESVKIWEVKTGRCLKTLSAHSDPVS--AVHFNCKGSLIVSGSYDGVCRIWD 195
Query: 1239 SETGENDSFAGKGHTNQVSRMTVDESGQ-LVSCSMDDTVRYTSLS----LRDYSG 1388
+ +G+ +S + +G+ ++ ++D+T++ S L+ Y+G
Sbjct: 196 AASGQCLKTLVDDDNPPISFVKFSPNGKYILIATLDNTLKLWDYSRGRCLKTYTG 250
Score = 68.6 bits (166), Expect = 1e-11
Identities = 55/225 (24%), Positives = 101/225 (44%), Gaps = 4/225 (1%)
Frame = +3
Query: 357 HAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYE--YQPFAGKIKDIAWTEDS 530
H V K++P+G ++AS + IW KYE + + +I D+AW+ DS
Sbjct: 40 HTEAVSSVKFSPNGEWLASSSADKVIIIWGAYDG----KYEKALKGHSLEISDVAWSSDS 95
Query: 531 KRIAVVGEGREKFGAVFLWD--SGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAA 704
R+ + + + +WD G + + GH+ + + + +GS D
Sbjct: 96 GRLVSASDDK----TLKIWDVRVGKCLKTLKGHSNYVFCCNFNPPSNL-IISGSFDESVK 150
Query: 705 FFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKA 884
+E + T+ HS V+ V F+ G+ + S DG I+D +G+ + +L
Sbjct: 151 IWEVKTGRCLKTLSAHSDPVSAVHFNCKGSLIVSGSYDGVCRIWDAASGQCLKTLVDD-- 208
Query: 885 HDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSN 1019
+ I + +SP+ ++L A+ D T K+WD + + T+T N
Sbjct: 209 DNPPISFVKFSPNGKYILIATLDNTLKLWDYSRGRCLKTYTGHKN 253
Score = 55.1 bits (131), Expect = 2e-07
Identities = 78/340 (22%), Positives = 140/340 (41%), Gaps = 22/340 (6%)
Frame = +3
Query: 1053 KDHLLSISLSGYINYLDKNNPSKPLRVIK----GHSKSIQCLTVHKNGGKSYIYSGSHDG 1220
+D +LS N K KP +K GH++++ + NG ++ S S D
Sbjct: 7 RDDKAGSALSSSANQ-SKQVAEKPNYTLKFTLVGHTEAVSSVKFSPNG--EWLASSSADK 63
Query: 1221 HINYWDSETGENDSFAGKGHTNQVSRMT-VDESGQLVSCSMDDTVRYTSLS----LRDYS 1385
I W + G+ + A KGH+ ++S + +SG+LVS S D T++ + L+
Sbjct: 64 VIIIWGAYDGKYEK-ALKGHSLEISDVAWSSDSGRLVSASDDKTLKIWDVRVGKCLKTLK 122
Query: 1386 GQG--VVKLEVQPKCVAVGPGGYTVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVHPG- 1556
G V P + G + V I ++ +C + +P V AVH
Sbjct: 123 GHSNYVFCCNFNPPSNLIISGSFDESVKIWEV----KTGRCLKTLSAHSDP-VSAVHFNC 177
Query: 1557 -GETVAVGGADGNVRLYSILGS----TLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASK 1721
G + G DG R++ TL D+ P++ V +S +G ++ +
Sbjct: 178 KGSLIVSGSYDGVCRIWDAASGQCLKTLVDDDN-----PPISFVKFSPNGKYILIATLDN 232
Query: 1722 VVTVFSVADGYSENNVFYGHHAKIVCLAWS---PDNEHFASGGMDMMVYVWTLSDPETRV 1892
+ ++ + G + GH + C+ + + SG D +VY+W L E
Sbjct: 233 TLKLWDYSRGRCLKT-YTGHKNEKYCIFANFSVTSGKWIVSGSEDNLVYIWNLQTKEIVQ 291
Query: 1893 KIQDAHRLHHVSSLAWLDEHTLVTTS--HDASVKEWTISY 2006
K+Q H +S+ E+ + + + +D +VK W +Y
Sbjct: 292 KLQ-GHTDVVISAACHPTENIIASAALGNDKTVKLWMSNY 330
>ref|XP_003358201.1| PREDICTED: notchless protein homolog 1 [Sus scrofa].
Length = 485
Score = 86.7 bits (213), Expect = 5e-17
Identities = 99/433 (22%), Positives = 168/433 (38%), Gaps = 15/433 (3%)
Frame = +3
Query: 612 ITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDG 791
+ GH++ + SV + Y LA+GS D F++ FT H +V + +SPDG
Sbjct: 110 LEGHSEAVISVAFSPTGKY-LASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 168
Query: 792 NRFATASADGQIYIYDGKTGEKV-CSLGGSKAHDGGIYAISW-----SPDSTHLLSASGD 953
+ A+ +GQI ++D TG++V +L G H I A+SW +P+ ++ S+S D
Sbjct: 169 KKLASGCKNGQILLWDPSTGKQVGRALAG---HSKWITALSWEPLHANPECRYVASSSKD 225
Query: 954 KTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLSGYINYLDKNNPSKPLRV 1133
+ +VWD + R+
Sbjct: 226 GSVRVWDTTA--------------------------------------------GRCERI 241
Query: 1134 IKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGE-NDSFAGKGH--------TN 1286
+ GH++S+ CL + GG +YS S D I W + G + G GH T+
Sbjct: 242 LTGHTQSVTCL---RWGGDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTD 298
Query: 1287 QVSRMTVDESGQLVSCSMDDTVRYTSLSLRDYSGQGVVKLEVQPKCVAVGPGGYTVVVCI 1466
R E + + D L R S +V+ + V+ G +T+ +
Sbjct: 299 YALRTGAFEPAEASVNAQDLRGSLQELKERALSRYNLVRGRGLERLVS-GSDDFTLFLWS 357
Query: 1467 GQIVLLKDQRKCFSIDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGSTLKDEGKLL 1646
+D++ + V P +A D +++L+ G T K L
Sbjct: 358 P----AEDKKPLARMTGHQALINQVLFSPDSRIIASASFDKSIKLWD--GRTGKYLASLR 411
Query: 1647 EAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEH 1826
V +A+S D L + + V+ V ++ GH ++ + WSPD +
Sbjct: 412 GHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLAADL-PGHADEVYAVDWSPDGQR 470
Query: 1827 FASGGMDMMVYVW 1865
ASGG D + +W
Sbjct: 471 VASGGKDKCLRIW 483
Score = 63.5 bits (153), Expect = 5e-10
Identities = 99/430 (23%), Positives = 169/430 (39%), Gaps = 14/430 (3%)
Frame = +3
Query: 357 HAHQVVVAKYAPSGFYIASGDVSGKLRIWD-TTQKEHLLKYEYQPFAGKIKDIAWTEDSK 533
H+ V+ ++P+G Y+ASG +R WD +T+ H + Q + I+W+ D K
Sbjct: 113 HSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPH---FTCQGHRHWVLSISWSPDGK 169
Query: 534 RIAVVGEGREKFGAVFLWD--SGSSVGE-ITGHNKVINSVDIK--QSRP--YRLATGSDD 692
++A K G + LWD +G VG + GH+K I ++ + + P +A+ S D
Sbjct: 170 KLA----SGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKD 225
Query: 693 NCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLG 872
++ + + + H++ V C+R+ DG + +AS D I ++ G +L
Sbjct: 226 GSVRVWDTTAGRCERILTGHTQSVTCLRWGGDGLLY-SASQDRTIKVWRAHDGVLCRTLQ 284
Query: 873 GSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTF---TMGSNVLDQQLGC 1043
G H + ++ S D A + V ++ + + L + G
Sbjct: 285 G---HGHWVNTMALSTDYALRTGAFEPAEASVNAQDLRGSLQELKERALSRYNLVRGRGL 341
Query: 1044 LWQKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGH 1223
+ L+S S + KPL + GH I V + I S S D
Sbjct: 342 ----ERLVSGSDDFTLFLWSPAEDKKPLARMTGHQALIN--QVLFSPDSRIIASASFDKS 395
Query: 1224 INYWDSETGENDSFAGKGHTNQVSRMTVD-ESGQLVSCSMDDTVRYTSLSLRDYSGQGVV 1400
I WD TG+ + + +GH V ++ +S LVS S D T++ + +
Sbjct: 396 IKLWDGRTGKYLA-SLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQK------- 447
Query: 1401 KLEVQPKCVAVGPGGYTVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAV--HPGGETVAV 1574
+ D PG+ EV AV P G+ VA
Sbjct: 448 ----------------------------------LAADLPGHADEVYAVDWSPDGQRVAS 473
Query: 1575 GGADGNVRLY 1604
GG D +R++
Sbjct: 474 GGKDKCLRIW 483
>ref|XP_001927037.1| PREDICTED: WD repeat-containing protein 61 [Sus scrofa].
Length = 305
Score = 81.3 bits (199), Expect = 2e-15
Identities = 59/199 (29%), Positives = 92/199 (46%)
Frame = +3
Query: 408 ASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKFGAVFLW 587
AS + +R+WD + + + P +A++ DS+ +A G K +F
Sbjct: 80 ASSSLDAHIRLWDLENGKQIKSIDAGPVDAWT--LAFSPDSQYLAT-GTHVGKVN-IFGV 135
Query: 588 DSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVN 767
+SG + K I S+ Y LA+G+ D F+ K T+ H+ +
Sbjct: 136 ESGKKEYSLDTRGKFILSIAYSPDGKY-LASGAIDGIINIFDIATGKLLHTLEGHAMPIR 194
Query: 768 CVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDSTHLLSAS 947
+ FSPD TAS DG I IYD + +L G H + +++ PD TH +S+S
Sbjct: 195 SLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG---HASWVLNVAFCPDDTHFVSSS 251
Query: 948 GDKTSKVWDVNVNSVVNTF 1004
DK+ KVWDV + V+TF
Sbjct: 252 SDKSVKVWDVGTRTCVHTF 270
Score = 56.6 bits (135), Expect = 6e-08
Identities = 35/112 (31%), Positives = 61/112 (54%)
Frame = +3
Query: 672 LATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTG 851
LATG+ F K ++++ +F+ + +SPDG A+ + DG I I+D TG
Sbjct: 121 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 180
Query: 852 EKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFT 1007
+ + +L G H I ++++SPDS L++AS D K++DV ++ T +
Sbjct: 181 KLLHTLEG---HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS 229
Score = 52.0 bits (123), Expect = 1e-06
Identities = 56/246 (22%), Positives = 104/246 (42%), Gaps = 15/246 (6%)
Frame = +3
Query: 1173 HKNGGKSYIYSGSHDGHINYWDSETGEND-SFAGKGHTNQVSRMTVDESGQL---VSCSM 1340
+K + +GS D + W + D ++ +GH Q+ ++VD S L S S+
Sbjct: 27 NKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGH--QLGVVSVDISHTLPIAASSSL 84
Query: 1341 DDTVRYTSLSLRDYSGQGVVKLEVQPK---CVAVGPGGYTVVVC--IGQIVL--LKDQRK 1499
D +R L +G+ + ++ P +A P + +G++ + ++ +K
Sbjct: 85 DAHIRLWDLE----NGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 140
Query: 1500 CFSIDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGSTLKDEGKLLEAKG----PVT 1667
+S+D G +A P G+ +A G DG + ++ I GKLL P+
Sbjct: 141 EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIA------TGKLLHTLEGHAMPIR 194
Query: 1668 DVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHFASGGMD 1847
+ +S D L + ++ V + GH + ++ +A+ PD+ HF S D
Sbjct: 195 SLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS-GHASWVLNVAFCPDDTHFVSSSSD 253
Query: 1848 MMVYVW 1865
V VW
Sbjct: 254 KSVKVW 259
>ref|XP_003353713.1| PREDICTED: WD repeat-containing protein 38-like [Sus scrofa].
Length = 312
Score = 77.0 bits (188), Expect = 4e-14
Identities = 69/232 (29%), Positives = 98/232 (42%), Gaps = 3/232 (1%)
Frame = +3
Query: 669 RLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKT 848
RL T S+D C +E + + +G H+ V RFSPDG FA+ S+D I ++D
Sbjct: 35 RLLTASEDGCVYGWETQSGRLLWKLGGHTGPVKFCRFSPDGRLFASTSSDCTIRLWD--- 91
Query: 849 GEKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLD 1028
KV L K H + +S+SPDS L S DK +W+V V+ +G
Sbjct: 92 VAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLR-HLVGHRDSI 150
Query: 1029 QQLGCLWQKDHLLSISLSGYINYLDKNNPSKPL--RVIKGHSKSIQCLTVHKNGGKSYIY 1202
Q D L + S I D + + + ++GH +I CL G +
Sbjct: 151 QSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG---LLA 207
Query: 1203 SGSHDGHINYWDSETGENDSFAGKGHTNQVSRMTVDESG-QLVSCSMDDTVR 1355
SGS D I+ W T + KGH V + G QL S TV+
Sbjct: 208 SGSWDKTIHIWKPST-RSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVK 258
Score = 76.6 bits (187), Expect = 5e-14
Identities = 72/248 (29%), Positives = 108/248 (43%), Gaps = 8/248 (3%)
Frame = +3
Query: 357 HAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAG---KIKDIAWTED 527
H V +++P G AS +R+WD + E L Q G ++ ++++ D
Sbjct: 62 HTGPVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECL-----QVLKGHQRSVETVSFSPD 116
Query: 528 SKRIAVVGEGREKFGAVFLWD--SGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCA 701
SK++A G + V LW+ SG + + GH I S D S LATGS D+
Sbjct: 117 SKQLASGGWDKR----VMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDC-LATGSWDSTI 171
Query: 702 AFFE---GPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLG 872
++ G F + H ++C+ FS G A+ S D I+I+ T + L
Sbjct: 172 RMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQL- 229
Query: 873 GSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQ 1052
K H + +I++SPD L SA T KVWD N +T VLD C +
Sbjct: 230 --KGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTL---KGVLDVAHSCAFT 284
Query: 1053 KDHLLSIS 1076
D L +S
Sbjct: 285 PDGKLLVS 292
Score = 69.7 bits (169), Expect = 6e-12
Identities = 65/220 (29%), Positives = 89/220 (40%), Gaps = 11/220 (5%)
Frame = +3
Query: 750 HSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDST 929
H VN FSPDG R TAS DG +Y ++ ++G + LGG H G + +SPD
Sbjct: 20 HRGEVNSSTFSPDGQRLLTASEDGCVYGWETQSGRLLWKLGG---HTGPVKFCRFSPDGR 76
Query: 930 HLLSASGDKTSKVWDVNVNSVVNTF--------TMGSNVLDQQLGC-LWQKDHLLSISLS 1082
S S D T ++WDV + T+ + +QL W K +L S
Sbjct: 77 LFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQS 136
Query: 1083 GYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDS 1262
G + LR + GH SIQ + + +GS D I WD G
Sbjct: 137 GQV-----------LRHLVGHRDSIQSSDFAPS--SDCLATGSWDSTIRMWDLRGGTGAI 183
Query: 1263 FAG--KGHTNQVSRMTVDESGQLVSCSMDDTVRYTSLSLR 1376
F +GH +S + G L S S D T+ S R
Sbjct: 184 FHQELEGHRGNISCLCFSAFGLLASGSWDKTIHIWKPSTR 223
>ref|XP_001927805.1| PREDICTED: WD repeat-containing protein 38-like [Sus scrofa].
Length = 312
Score = 77.0 bits (188), Expect = 4e-14
Identities = 69/232 (29%), Positives = 98/232 (42%), Gaps = 3/232 (1%)
Frame = +3
Query: 669 RLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKT 848
RL T S+D C +E + + +G H+ V RFSPDG FA+ S+D I ++D
Sbjct: 35 RLLTASEDGCVYGWETQSGRLLWKLGGHTGPVKFCRFSPDGRLFASTSSDCTIRLWD--- 91
Query: 849 GEKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLD 1028
KV L K H + +S+SPDS L S DK +W+V V+ +G
Sbjct: 92 VAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLR-HLVGHRDSI 150
Query: 1029 QQLGCLWQKDHLLSISLSGYINYLDKNNPSKPL--RVIKGHSKSIQCLTVHKNGGKSYIY 1202
Q D L + S I D + + + ++GH +I CL G +
Sbjct: 151 QSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG---LLA 207
Query: 1203 SGSHDGHINYWDSETGENDSFAGKGHTNQVSRMTVDESG-QLVSCSMDDTVR 1355
SGS D I+ W T + KGH V + G QL S TV+
Sbjct: 208 SGSWDKTIHIWKPST-RSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVK 258
Score = 76.6 bits (187), Expect = 5e-14
Identities = 72/248 (29%), Positives = 108/248 (43%), Gaps = 8/248 (3%)
Frame = +3
Query: 357 HAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAG---KIKDIAWTED 527
H V +++P G AS +R+WD + E L Q G ++ ++++ D
Sbjct: 62 HTGPVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECL-----QVLKGHQRSVETVSFSPD 116
Query: 528 SKRIAVVGEGREKFGAVFLWD--SGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCA 701
SK++A G + V LW+ SG + + GH I S D S LATGS D+
Sbjct: 117 SKQLASGGWDKR----VMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDC-LATGSWDSTI 171
Query: 702 AFFE---GPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLG 872
++ G F + H ++C+ FS G A+ S D I+I+ T + L
Sbjct: 172 RMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQL- 229
Query: 873 GSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQ 1052
K H + +I++SPD L SA T KVWD N +T VLD C +
Sbjct: 230 --KGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTL---KGVLDVAHSCAFT 284
Query: 1053 KDHLLSIS 1076
D L +S
Sbjct: 285 PDGKLLVS 292
Score = 69.7 bits (169), Expect = 6e-12
Identities = 65/220 (29%), Positives = 89/220 (40%), Gaps = 11/220 (5%)
Frame = +3
Query: 750 HSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDST 929
H VN FSPDG R TAS DG +Y ++ ++G + LGG H G + +SPD
Sbjct: 20 HRGEVNSSTFSPDGQRLLTASEDGCVYGWETQSGRLLWKLGG---HTGPVKFCRFSPDGR 76
Query: 930 HLLSASGDKTSKVWDVNVNSVVNTF--------TMGSNVLDQQLGC-LWQKDHLLSISLS 1082
S S D T ++WDV + T+ + +QL W K +L S
Sbjct: 77 LFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQS 136
Query: 1083 GYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDS 1262
G + LR + GH SIQ + + +GS D I WD G
Sbjct: 137 GQV-----------LRHLVGHRDSIQSSDFAPS--SDCLATGSWDSTIRMWDLRGGTGAI 183
Query: 1263 FAG--KGHTNQVSRMTVDESGQLVSCSMDDTVRYTSLSLR 1376
F +GH +S + G L S S D T+ S R
Sbjct: 184 FHQELEGHRGNISCLCFSAFGLLASGSWDKTIHIWKPSTR 223
>ref|XP_003360782.1| PREDICTED: POC1 centriolar protein homolog B-like, partial [Sus
scrofa].
Length = 416
Score = 76.3 bits (186), Expect = 7e-14
Identities = 68/281 (24%), Positives = 117/281 (41%), Gaps = 10/281 (3%)
Frame = +3
Query: 441 WDTTQKEHLLKYEYQPFAGKI-----KDIAWTEDSKRIAVVGEGREKFGAVFLW--DSGS 599
WDT L+ + ++P A KD+ + + + + V LW D
Sbjct: 83 WDT----FLMLWSFKPQARAFRYVGHKDVVTSVQFSPLGNLLASASRDRTVRLWIPDKRG 138
Query: 600 SVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRF 779
E H + SVD + LAT S+D +F +++ H+ +V C +F
Sbjct: 139 KSSEFKAHTAPVRSVDFSADGQF-LATASEDKSIXXXXXHRQRFLYSLYRHTHWVRCAKF 197
Query: 780 SPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKT 959
SPDG + S D I I+D T K C + G + ++P+ T + SA D T
Sbjct: 198 SPDGRLIVSCSEDKTIKIWD--TTNKQC-VNNFSDFVGFANFVDFNPNGTCIASAGSDHT 254
Query: 960 SKVWDVNVNSVVNTFTMGSNVLDQQLGCLW---QKDHLLSISLSGYINYLDKNNPSKPLR 1130
K+WD+ VN ++ + + S + C+ ++L++ S G + LD + +
Sbjct: 255 VKIWDIRVNKLLQHYQVHSG----GVNCVSFHPSGNYLITASSDGTLKILDLLE-GRLIY 309
Query: 1131 VIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGE 1253
++GH+ + TV + G SG D + W + E
Sbjct: 310 TLQGHTGPV--FTVSFSKGGELFTSGGADAQVLLWRTNFDE 348
Score = 62.8 bits (151), Expect = 8e-10
Identities = 54/212 (25%), Positives = 79/212 (37%)
Frame = +3
Query: 357 HAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKR 536
H H V AK++P G I S ++IWDTT K+ + + F G + + +
Sbjct: 188 HTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCV--NNFSDFVGFANFVDFNPNGTC 245
Query: 537 IAVVGEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEG 716
IA G V +WD V ++ H +V
Sbjct: 246 IASAGSDH----TVKIWD--IRVNKLLQHYQV---------------------------- 271
Query: 717 PPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGG 896
HS VNCV F P GN TAS+DG + I D G + +L G H G
Sbjct: 272 -----------HSGGVNCVSFHPSGNYLITASSDGTLKILDLLEGRLIYTLQG---HTGP 317
Query: 897 IYAISWSPDSTHLLSASGDKTSKVWDVNVNSV 992
++ +S+S S D +W N + +
Sbjct: 318 VFTVSFSKGGELFTSGGADAQVLLWRTNFDEL 349
Score = 52.0 bits (123), Expect = 1e-06
Identities = 58/271 (21%), Positives = 107/271 (39%), Gaps = 9/271 (3%)
Frame = +3
Query: 1203 SGSHDGHINYW-DSETGENDSFAGKGHTNQVSRMTVDESGQLVSCSMDDTVRYTSLSLRD 1379
S S D + W + G++ F K HT V + GQ ++ + +D R
Sbjct: 122 SASRDRTVRLWIPDKRGKSSEF--KAHTAPVRSVDFSADGQFLATASEDKSIXXXXXHRQ 179
Query: 1380 YSGQGVVKLEVQPKCVAVGPGGYTVVVCI-GQIVLLKD--QRKCFS--IDNPGYEPEVVA 1544
+ + +C P G +V C + + + D ++C + D G+ V
Sbjct: 180 RFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDFVGFA-NFVD 238
Query: 1545 VHPGGETVAVGGADGNVRLYSILGSTLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASKV 1724
+P G +A G+D V+++ I + L ++ G V V++ G +L +
Sbjct: 239 FNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQV--HSGGVNCVSFHPSGNYLITASSDGT 296
Query: 1725 VTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHFASGGMDMMVYVWTLSDPETRVK--- 1895
+ + + +G + GH + +++S E F SGG D V +W + E K
Sbjct: 297 LKILDLLEGRLIYTL-QGHTGPVFTVSFSKGGELFTSGGADAQVLLWRTNFDELNCKDVI 355
Query: 1896 IQDAHRLHHVSSLAWLDEHTLVTTSHDASVK 1988
++ RLH S LD + H+ +
Sbjct: 356 KRNLKRLHFDSPPHLLDIYPRTPHPHEGKTE 386
>ref|XP_003132294.2| PREDICTED: POC1 centriolar protein homolog A-like [Sus scrofa].
Length = 344
Score = 74.3 bits (181), Expect = 3e-13
Identities = 76/339 (22%), Positives = 132/339 (38%), Gaps = 3/339 (0%)
Frame = +3
Query: 324 DNPAVADIYTEHAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKI 503
++P++ + H V ++ + +ASG + L +W K Y + +
Sbjct: 7 EDPSLERHFKGHRDAVTCVDFSFNMKQLASGSMDSCLMVWH--MKPQSRAYRFTGHKDAV 64
Query: 504 KDIAWTEDSKRIAVVGEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATG 683
+ ++ +A R+K +++ + H + SV S T
Sbjct: 65 TCVNFSPSGHLLA--SGSRDKTVRIWVPNIKGESTVFRAHTATVRSVHFC-SDGQSFVTA 121
Query: 684 SDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVC 863
SDD + KF F++ H +V C +FSPDG +AS D + ++D + E V
Sbjct: 122 SDDKTIKVWSTHRQKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVH 181
Query: 864 SLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGC 1043
S H G + + + P T + +A D T KVWDV + ++ + + S ++ L
Sbjct: 182 SY---CEHGGFVTYVDFHPSGTCVAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVN-ALSF 237
Query: 1044 LWQKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGH 1223
++L++ S + LD + L + GH + + G Y SG D
Sbjct: 238 HPSGNYLVTASSDSTLKILDLME-GRLLYTLHGHQGPATTVAFSRTG--EYFASGGSDEQ 294
Query: 1224 INYWDSETGENDSFAGKGHTNQVSR---MTVDESGQLVS 1331
+ W S N G +V R SG LVS
Sbjct: 295 VMVWKS----NFDVIDYGEVLRVQRPPATLASSSGTLVS 329
Score = 64.3 bits (155), Expect = 3e-10
Identities = 55/234 (23%), Positives = 93/234 (39%), Gaps = 9/234 (3%)
Frame = +3
Query: 303 CVILRNIDNPAVADIYTEHAHQVVVAKYAPSGFYIASGDVSGKLRIW-------DTTQKE 461
C+++ ++ + A +T H V ++PSG +ASG +RIW T +
Sbjct: 42 CLMVWHMKPQSRAYRFTGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNIKGESTVFRA 101
Query: 462 HLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKFGAVFLWDSGSSVGEITGHNKVINS 641
H F + D K I V R+KF + ++ IN
Sbjct: 102 HTATVRSVHFCSDGQSFVTASDDKTIKVWSTHRQKF--------------LFSLSQHINW 147
Query: 642 VDIKQSRP--YRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASA 815
V + P + + SDD ++ + + +H FV V F P G A A
Sbjct: 148 VRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEHGGFVTYVDFHPSGTCVAAAGM 207
Query: 816 DGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDV 977
D + ++D +T L + H + A+S+ P +L++AS D T K+ D+
Sbjct: 208 DNTVKVWDVRTHR---LLQHYQLHSAAVNALSFHPSGNYLVTASSDSTLKILDL 258
Score = 62.4 bits (150), Expect = 1e-09
Identities = 61/248 (24%), Positives = 100/248 (40%), Gaps = 6/248 (2%)
Frame = +3
Query: 1140 GHSKSIQCLTVHKNGGKSYIYSGSHDGHINYW-DSETGENDSFAGKGHTNQVSRMTVDES 1316
GH ++ C+ +G + SGS D + W + GE+ F + HT V +
Sbjct: 59 GHKDAVTCVNFSPSG--HLLASGSRDKTVRIWVPNIKGESTVF--RAHTATVRSVHFCSD 114
Query: 1317 GQ-LVSCSMDDTVRYTSLSLRDYSGQGVVKLEVQPKCVAVGPGGYTVVVCIGQIVLL--- 1484
GQ V+ S D T++ S + + + +C P G +V +
Sbjct: 115 GQSFVTASDDKTIKVWSTHRQKFLFSLSQHIN-WVRCAKFSPDGRLIVSASDDKTVKLWD 173
Query: 1485 KDQRKCF-SIDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGSTLKDEGKLLEAKGP 1661
K R+C S G V HP G VA G D V+++ + L +L A
Sbjct: 174 KTSRECVHSYCEHGGFVTYVDFHPSGTCVAAAGMDNTVKVWDVRTHRLLQHYQLHSAA-- 231
Query: 1662 VTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHFASGG 1841
V +++ G +L + + + + +G + +GH +A+S E+FASGG
Sbjct: 232 VNALSFHPSGNYLVTASSDSTLKILDLMEGRLLYTL-HGHQGPATTVAFSRTGEYFASGG 290
Query: 1842 MDMMVYVW 1865
D V VW
Sbjct: 291 SDEQVMVW 298
>ref|XP_003353667.1| PREDICTED: LOW QUALITY PROTEIN: u4/U6 small nuclear
ribonucleoprotein Prp4-like [Sus scrofa].
Length = 506
Score = 72.0 bits (175), Expect = 1e-12
Identities = 64/219 (29%), Positives = 101/219 (46%), Gaps = 3/219 (1%)
Frame = +3
Query: 324 DNPAVADIYTEHAHQVVVAK--YAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAG 497
D P VADI H V VA+ + PSG ++ + R+WD +E +L E
Sbjct: 297 DEP-VADI---EGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMG- 351
Query: 498 KIKDIAWTEDSKRIAVVGEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLA 677
+ DIA+ +D +A G G + FG V+ +G + + GH K I ++ + Y +A
Sbjct: 352 -VYDIAFHQDGS-LAGTG-GLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPN-GYHIA 407
Query: 678 TGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSP-DGNRFATASADGQIYIYDGKTGE 854
TGS DN ++ + +TI H V V+F P GN T + D I+
Sbjct: 408 TGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTHPGWS 467
Query: 855 KVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVW 971
+ +L G H+G + + S D + + S D+T K+W
Sbjct: 468 PLKTLAG---HEGKVMGLDISSDGQLIATCSYDRTFKLW 503
Score = 59.3 bits (142), Expect = 9e-09
Identities = 47/167 (28%), Positives = 73/167 (43%), Gaps = 2/167 (1%)
Frame = +3
Query: 750 HSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDST 929
HS V + F DG+ T D ++D +TG + L G H IY I++SP+
Sbjct: 348 HSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEG---HLKEIYGINFSPNGY 404
Query: 930 HLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLSGYINYLD-K 1106
H+ + SGD T KVWD+ V T N++ G ++ H + Y N
Sbjct: 405 HIATGSGDNTCKVWDLRQRRCVYTIPAHQNLV---TGVKFEPIHGNFLLTGAYDNTAKIW 461
Query: 1107 NNPS-KPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSE 1244
+P PL+ + GH + L + +G I + S+D W +E
Sbjct: 462 THPGWSPLKTLAGHEGKVMGLDISSDG--QLIATCSYDRTFKLWMAE 506
>ref|XP_003362067.1| PREDICTED: f-box/WD repeat-containing protein 7 isoform 3 [Sus
scrofa].
Length = 589
Score = 70.1 bits (170), Expect = 5e-12
Identities = 59/284 (20%), Positives = 125/284 (44%), Gaps = 3/284 (1%)
Frame = +3
Query: 411 SGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKFGAVFLWD 590
SG L++W + L + G + W+ + ++ ++ V+ +
Sbjct: 278 SGSDDNTLKVWSAVTGKCL-----RTLVGHTGGV-WSSQMRDNIIISGSTDRTLKVWNAE 331
Query: 591 SGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNC 770
+G + + GH + + + + R + +GS D ++ + + H V C
Sbjct: 332 TGECIHTLYGHTSTVRCMHLHEKR---VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC 388
Query: 771 VRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDSTHLLSASG 950
V++ DG R + + D + ++D +T + +L G H +Y++ + D H++S S
Sbjct: 389 VQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQG---HTNRVYSLQF--DGIHVVSGSL 441
Query: 951 DKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLSGYINYLDKNNPSKPLR 1130
D + +VWDV + ++T T ++ G + + L+S + + D + L+
Sbjct: 442 DTSIRVWDVETGNCIHTLTGHQSLTS---GMELKDNILVSGNADSTVKIWDIKT-GQCLQ 497
Query: 1131 VIKG---HSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGE 1253
++G H ++ CL +KN ++ + S DG + WD +TGE
Sbjct: 498 TLQGPNKHQSAVTCLQFNKN----FVITSSDDGTVKLWDLKTGE 537
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 51,465,927
Number of extensions: 1454955
Number of successful extensions: 7464
Number of sequences better than 1.0e-05: 64
Number of HSP's gapped: 6916
Number of HSP's successfully gapped: 123
Length of query: 734
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 628
Effective length of database: 8,704,850
Effective search space: 5466645800
Effective search space used: 5466645800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007604
(2204 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_059830.1| WD repeat-containing protein 1 isoform 1 [Homo ... 1223 0.0
Alignment gi|NP_005103.2| WD repeat-containing protein 1 isoform 2 [Homo ... 846 0.0
Alignment gi|NP_438172.1| WD repeat-containing protein 5 [Homo sapiens]. 92 2e-18
Alignment gi|NP_060058.1| WD repeat-containing protein 5 [Homo sapiens]. 92 2e-18
Alignment gi|NP_061942.2| WD repeat-containing protein 5B [Homo sapiens]. 88 4e-17
Alignment gi|NP_758440.1| POC1 centriolar protein homolog B isoform a [Ho... 87 5e-17
Alignment gi|NP_060566.2| notchless protein homolog 1 isoform a [Homo sap... 86 1e-16
Alignment gi|NP_079510.1| WD repeat-containing protein 61 [Homo sapiens]. 81 4e-15
Alignment gi|NP_001186706.1| POC1 centriolar protein homolog B isoform b ... 79 1e-14
Alignment gi|NP_849143.1| WD repeat-containing protein 69 [Homo sapiens]. 78 3e-14
>ref|NP_059830.1| WD repeat-containing protein 1 isoform 1 [Homo sapiens].
Length = 606
Score = 1223 bits (3165), Expect = 0.0
Identities = 587/606 (96%), Positives = 600/606 (99%)
Frame = +3
Query: 189 MPYEIKKVFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVILRNIDNPAVADIYTEHAHQ 368
MPYEIKKVFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVILRNIDNPA+ADIYTEHAHQ
Sbjct: 1 MPYEIKKVFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVILRNIDNPALADIYTEHAHQ 60
Query: 369 VVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV 548
VVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV
Sbjct: 61 VVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV 120
Query: 549 GEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFK 728
GEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFK
Sbjct: 121 GEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFK 180
Query: 729 FKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAI 908
FKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVC+LGGSKAHDGGIYAI
Sbjct: 181 FKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCALGGSKAHDGGIYAI 240
Query: 909 SWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLSGY 1088
SWSPDSTHLLSASGDKTSK+WDV+VNSVV+TF MGS VLDQQLGCLWQKDHLLS+SLSGY
Sbjct: 241 SWSPDSTHLLSASGDKTSKIWDVSVNSVVSTFPMGSTVLDQQLGCLWQKDHLLSVSLSGY 300
Query: 1089 INYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFA 1268
INYLD+NNPSKPL VIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFA
Sbjct: 301 INYLDRNNPSKPLHVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFA 360
Query: 1269 GKGHTNQVSRMTVDESGQLVSCSMDDTVRYTSLSLRDYSGQGVVKLEVQPKCVAVGPGGY 1448
GKGHTNQVSRMTVDESGQL+SCSMDDTVRYTSL LRDYSGQGVVKL+VQPKCVAVGPGGY
Sbjct: 361 GKGHTNQVSRMTVDESGQLISCSMDDTVRYTSLMLRDYSGQGVVKLDVQPKCVAVGPGGY 420
Query: 1449 TVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGSTLK 1628
VVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVHPGG+TVA+GG DGNVRLYSILG+TLK
Sbjct: 421 AVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVHPGGDTVAIGGVDGNVRLYSILGTTLK 480
Query: 1629 DEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAW 1808
DEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAW
Sbjct: 481 DEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAW 540
Query: 1809 SPDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVK 1988
SPDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVK
Sbjct: 541 SPDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVK 600
Query: 1989 EWTISY 2006
EWTI+Y
Sbjct: 601 EWTITY 606
>ref|NP_005103.2| WD repeat-containing protein 1 isoform 2 [Homo sapiens].
Length = 466
Score = 846 bits (2185), Expect = 0.0
Identities = 403/422 (95%), Positives = 415/422 (98%)
Frame = +3
Query: 741 IGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSP 920
I DHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVC+LGGSKAHDGGIYAISWSP
Sbjct: 45 IDDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCALGGSKAHDGGIYAISWSP 104
Query: 921 DSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLSGYINYL 1100
DSTHLLSASGDKTSK+WDV+VNSVV+TF MGS VLDQQLGCLWQKDHLLS+SLSGYINYL
Sbjct: 105 DSTHLLSASGDKTSKIWDVSVNSVVSTFPMGSTVLDQQLGCLWQKDHLLSVSLSGYINYL 164
Query: 1101 DKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFAGKGH 1280
D+NNPSKPL VIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFAGKGH
Sbjct: 165 DRNNPSKPLHVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFAGKGH 224
Query: 1281 TNQVSRMTVDESGQLVSCSMDDTVRYTSLSLRDYSGQGVVKLEVQPKCVAVGPGGYTVVV 1460
TNQVSRMTVDESGQL+SCSMDDTVRYTSL LRDYSGQGVVKL+VQPKCVAVGPGGY VVV
Sbjct: 225 TNQVSRMTVDESGQLISCSMDDTVRYTSLMLRDYSGQGVVKLDVQPKCVAVGPGGYAVVV 284
Query: 1461 CIGQIVLLKDQRKCFSIDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGSTLKDEGK 1640
CIGQIVLLKDQRKCFSIDNPGYEPEVVAVHPGG+TVA+GG DGNVRLYSILG+TLKDEGK
Sbjct: 285 CIGQIVLLKDQRKCFSIDNPGYEPEVVAVHPGGDTVAIGGVDGNVRLYSILGTTLKDEGK 344
Query: 1641 LLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDN 1820
LLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDN
Sbjct: 345 LLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDN 404
Query: 1821 EHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVKEWTI 2000
EHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVKEWTI
Sbjct: 405 EHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVKEWTI 464
Query: 2001 SY 2006
+Y
Sbjct: 465 TY 466
Score = 124 bits (311), Expect = 4e-28
Identities = 94/264 (35%), Positives = 130/264 (49%), Gaps = 7/264 (2%)
Frame = +3
Query: 189 MPYEIKKVFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVILRNIDNPAVADIYTEHAHQ 368
MPYEIKKVFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVILRNID +H+
Sbjct: 1 MPYEIKKVFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVILRNID---------DHSRF 51
Query: 369 VVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKY-EYQPFAGKIKDIAWTEDSKR-IA 542
V +++P G A+ G++ I+D E + + G I I+W+ DS ++
Sbjct: 52 VNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCALGGSKAHDGGIYAISWSPDSTHLLS 111
Query: 543 VVGEGREKFGAVFLWD-SGSSVGEI--TGHNKVINSVDIKQSRPYRLATGSDDNCAAFFE 713
G+ K +WD S +SV G + + + + L+
Sbjct: 112 ASGDKTSK-----IWDVSVNSVVSTFPMGSTVLDQQLGCLWQKDHLLSVSLSGYINYLDR 166
Query: 714 GPPFKFKFTIGDHSRFVNCVRFSPDGNR--FATASADGQIYIYDGKTGEKVCSLGGSKAH 887
P K I HS+ + C+ +G + + S DG I +D +TGE G K H
Sbjct: 167 NNPSKPLHVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFAG--KGH 224
Query: 888 DGGIYAISWSPDSTHLLSASGDKT 959
+ ++ +S L+S S D T
Sbjct: 225 TNQVSRMT-VDESGQLISCSMDDT 247
>ref|NP_438172.1| WD repeat-containing protein 5 [Homo sapiens].
Length = 334
Score = 92.4 bits (228), Expect = 2e-18
Identities = 75/234 (32%), Positives = 116/234 (49%), Gaps = 10/234 (4%)
Frame = +3
Query: 717 PPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYI---YDGKTGEKVCSLGGSKAH 887
P + KFT+ H++ V+ V+FSP+G A++SAD I I YDGK EK S H
Sbjct: 33 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTIS-----GH 86
Query: 888 DGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLW--QKDH 1061
GI ++WS DS L+SAS DKT K+WDV+ + T SN + C + Q +
Sbjct: 87 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV---FCCNFNPQSNL 143
Query: 1062 LLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDS 1241
++S S + D K L+ + HS + VH N S I S S+DG WD+
Sbjct: 144 IVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVS--AVHFNRDGSLIVSSSYDGLCRIWDT 200
Query: 1242 ETGENDSFAGKGHTNQVSRMTVDESGQ-LVSCSMDDTVRYTSLS----LRDYSG 1388
+G+ VS + +G+ +++ ++D+T++ S L+ Y+G
Sbjct: 201 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 254
Score = 73.2 bits (178), Expect = 1e-12
Identities = 73/316 (23%), Positives = 128/316 (40%), Gaps = 4/316 (1%)
Frame = +3
Query: 357 HAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGK--IKDIAWTEDS 530
H V K++P+G ++AS ++IW K+E K I D+AW+ DS
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDS 99
Query: 531 KRIAVVGEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFF 710
N ++++ D K + + +++G
Sbjct: 100 -------------------------------NLLVSASDDKTLKIWDVSSG--------- 119
Query: 711 EGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHD 890
K T+ HS +V C F+P N + S D + I+D KTG+ + +L AH
Sbjct: 120 -----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL---PAHS 171
Query: 891 GGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLS 1070
+ A+ ++ D + ++S+S D ++WD + T N + ++L+
Sbjct: 172 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 231
Query: 1071 ISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVH--KNGGKSYIYSGSHDGHINYWDSE 1244
+L + D + K L+ GH C+ + GGK +I SGS D + W+ +
Sbjct: 232 ATLDNTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQ 289
Query: 1245 TGENDSFAGKGHTNQV 1292
T E +GHT+ V
Sbjct: 290 TKEIVQKL-QGHTDVV 304
Score = 67.4 bits (163), Expect = 5e-11
Identities = 63/262 (24%), Positives = 113/262 (43%), Gaps = 6/262 (2%)
Frame = +3
Query: 612 ITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDG 791
+ GH K ++SV + + LA+ S D + KF+ TI H ++ V +S D
Sbjct: 41 LAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 792 NRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVW 971
N +AS D + I+D +G+ + +L K H ++ +++P S ++S S D++ ++W
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTL---KGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156
Query: 972 DVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLS--GYINYLDKNNPSKPLRVIKGH 1145
DV + T S D + +D L +S S G D + +I
Sbjct: 157 DVKTGKCLKTLPAHS---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 213
Query: 1146 SKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFAGKGHTNQ----VSRMTVDE 1313
+ + + NG YI + + D + WD G+ GH N+ + +V
Sbjct: 214 NPPVSFVKFSPNG--KYILAATLDNTLKLWDYSKGKCLK-TYTGHKNEKYCIFANFSVTG 270
Query: 1314 SGQLVSCSMDDTVRYTSLSLRD 1379
+VS S D+ V +L ++
Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKE 292
Score = 50.8 bits (120), Expect = 5e-06
Identities = 73/316 (23%), Positives = 126/316 (39%), Gaps = 19/316 (6%)
Frame = +3
Query: 1104 KNNPSKPLRVIK----GHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFAG 1271
K P KP +K GH+K++ + NG ++ S S D I W + G+ +
Sbjct: 27 KPTPVKPNYALKFTLAGHTKAVSSVKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTIS 84
Query: 1272 KGHTNQVSRMT-VDESGQLVSCSMDDTVRYTSLS----LRDYSGQG--VVKLEVQPKCVA 1430
GH +S + +S LVS S D T++ +S L+ G V P+
Sbjct: 85 -GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 143
Query: 1431 VGPGGYTVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVH--PGGETVAVGGADGNVRLY 1604
+ G + V I + KC P + V AVH G + DG R++
Sbjct: 144 IVSGSFDESVRIWDV----KTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198
Query: 1605 SIL-GSTLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGH 1781
G LK + + PV+ V +S +G ++ + ++ + G + GH
Sbjct: 199 DTASGQCLKT--LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGH 255
Query: 1782 HAKIVCLAWS---PDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEH 1952
+ C+ + + SG D +VY+W L E K+Q H +S+ E+
Sbjct: 256 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISTACHPTEN 314
Query: 1953 TLVTTS--HDASVKEW 1994
+ + + +D ++K W
Sbjct: 315 IIASAALENDKTIKLW 330
>ref|NP_060058.1| WD repeat-containing protein 5 [Homo sapiens].
Length = 334
Score = 92.4 bits (228), Expect = 2e-18
Identities = 75/234 (32%), Positives = 116/234 (49%), Gaps = 10/234 (4%)
Frame = +3
Query: 717 PPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYI---YDGKTGEKVCSLGGSKAH 887
P + KFT+ H++ V+ V+FSP+G A++SAD I I YDGK EK S H
Sbjct: 33 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTIS-----GH 86
Query: 888 DGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLW--QKDH 1061
GI ++WS DS L+SAS DKT K+WDV+ + T SN + C + Q +
Sbjct: 87 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV---FCCNFNPQSNL 143
Query: 1062 LLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDS 1241
++S S + D K L+ + HS + VH N S I S S+DG WD+
Sbjct: 144 IVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVS--AVHFNRDGSLIVSSSYDGLCRIWDT 200
Query: 1242 ETGENDSFAGKGHTNQVSRMTVDESGQ-LVSCSMDDTVRYTSLS----LRDYSG 1388
+G+ VS + +G+ +++ ++D+T++ S L+ Y+G
Sbjct: 201 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 254
Score = 73.2 bits (178), Expect = 1e-12
Identities = 73/316 (23%), Positives = 128/316 (40%), Gaps = 4/316 (1%)
Frame = +3
Query: 357 HAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGK--IKDIAWTEDS 530
H V K++P+G ++AS ++IW K+E K I D+AW+ DS
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDS 99
Query: 531 KRIAVVGEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFF 710
N ++++ D K + + +++G
Sbjct: 100 -------------------------------NLLVSASDDKTLKIWDVSSG--------- 119
Query: 711 EGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHD 890
K T+ HS +V C F+P N + S D + I+D KTG+ + +L AH
Sbjct: 120 -----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL---PAHS 171
Query: 891 GGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLS 1070
+ A+ ++ D + ++S+S D ++WD + T N + ++L+
Sbjct: 172 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 231
Query: 1071 ISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVH--KNGGKSYIYSGSHDGHINYWDSE 1244
+L + D + K L+ GH C+ + GGK +I SGS D + W+ +
Sbjct: 232 ATLDNTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQ 289
Query: 1245 TGENDSFAGKGHTNQV 1292
T E +GHT+ V
Sbjct: 290 TKEIVQKL-QGHTDVV 304
Score = 67.4 bits (163), Expect = 5e-11
Identities = 63/262 (24%), Positives = 113/262 (43%), Gaps = 6/262 (2%)
Frame = +3
Query: 612 ITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDG 791
+ GH K ++SV + + LA+ S D + KF+ TI H ++ V +S D
Sbjct: 41 LAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 792 NRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVW 971
N +AS D + I+D +G+ + +L K H ++ +++P S ++S S D++ ++W
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTL---KGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156
Query: 972 DVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLS--GYINYLDKNNPSKPLRVIKGH 1145
DV + T S D + +D L +S S G D + +I
Sbjct: 157 DVKTGKCLKTLPAHS---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 213
Query: 1146 SKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFAGKGHTNQ----VSRMTVDE 1313
+ + + NG YI + + D + WD G+ GH N+ + +V
Sbjct: 214 NPPVSFVKFSPNG--KYILAATLDNTLKLWDYSKGKCLK-TYTGHKNEKYCIFANFSVTG 270
Query: 1314 SGQLVSCSMDDTVRYTSLSLRD 1379
+VS S D+ V +L ++
Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKE 292
Score = 50.8 bits (120), Expect = 5e-06
Identities = 73/316 (23%), Positives = 126/316 (39%), Gaps = 19/316 (6%)
Frame = +3
Query: 1104 KNNPSKPLRVIK----GHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFAG 1271
K P KP +K GH+K++ + NG ++ S S D I W + G+ +
Sbjct: 27 KPTPVKPNYALKFTLAGHTKAVSSVKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTIS 84
Query: 1272 KGHTNQVSRMT-VDESGQLVSCSMDDTVRYTSLS----LRDYSGQG--VVKLEVQPKCVA 1430
GH +S + +S LVS S D T++ +S L+ G V P+
Sbjct: 85 -GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 143
Query: 1431 VGPGGYTVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVH--PGGETVAVGGADGNVRLY 1604
+ G + V I + KC P + V AVH G + DG R++
Sbjct: 144 IVSGSFDESVRIWDV----KTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198
Query: 1605 SIL-GSTLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGH 1781
G LK + + PV+ V +S +G ++ + ++ + G + GH
Sbjct: 199 DTASGQCLKT--LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGH 255
Query: 1782 HAKIVCLAWS---PDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEH 1952
+ C+ + + SG D +VY+W L E K+Q H +S+ E+
Sbjct: 256 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISTACHPTEN 314
Query: 1953 TLVTTS--HDASVKEW 1994
+ + + +D ++K W
Sbjct: 315 IIASAALENDKTIKLW 330
>ref|NP_061942.2| WD repeat-containing protein 5B [Homo sapiens].
Length = 330
Score = 87.8 bits (216), Expect = 4e-17
Identities = 71/232 (30%), Positives = 113/232 (48%), Gaps = 6/232 (2%)
Frame = +3
Query: 711 EGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHD 890
E P + K T+ H+ V+ V+FSP+G A++SAD I I+ G+ +L G H+
Sbjct: 27 ENPNYALKCTLVGHTEAVSSVKFSPNGEWLASSSADRLIIIWGAYDGKYEKTLYG---HN 83
Query: 891 GGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLS 1070
I ++WS DS+ L+SAS DKT K+WDV + T SN + C + L
Sbjct: 84 LEISDVAWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSNYV---FCCNFNPPSNLI 140
Query: 1071 ISLS-GYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSET 1247
IS S + + K L+ + HS + VH N S I SGS+DG WD+ +
Sbjct: 141 ISGSFDETVKIWEVKTGKCLKTLSAHSDPVS--AVHFNCSGSLIVSGSYDGLCRIWDAAS 198
Query: 1248 GENDSFAGKGHTNQVSRMTVDESGQ-LVSCSMDDTVRYTSLS----LRDYSG 1388
G+ VS + +G+ +++ ++D+T++ S L+ Y+G
Sbjct: 199 GQCLKTLVDDDNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTG 250
Score = 75.1 bits (183), Expect = 3e-13
Identities = 57/225 (25%), Positives = 102/225 (45%), Gaps = 4/225 (1%)
Frame = +3
Query: 357 HAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAG--KIKDIAWTEDS 530
H V K++P+G ++AS + IW KYE + +I D+AW+ DS
Sbjct: 40 HTEAVSSVKFSPNGEWLASSSADRLIIIWGAYDG----KYEKTLYGHNLEISDVAWSSDS 95
Query: 531 KRIAVVGEGREKFGAVFLWD--SGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAA 704
R+ + + + LWD SG + + GH+ + + + +GS D
Sbjct: 96 SRLVSASDDK----TLKLWDVRSGKCLKTLKGHSNYVFCCNFNPPSNL-IISGSFDETVK 150
Query: 705 FFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKA 884
+E K T+ HS V+ V F+ G+ + S DG I+D +G+ + +L
Sbjct: 151 IWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDAASGQCLKTLVDD-- 208
Query: 885 HDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSN 1019
+ + + +SP+ ++L+A+ D T K+WD + + T+T N
Sbjct: 209 DNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKN 253
Score = 69.3 bits (168), Expect = 1e-11
Identities = 62/243 (25%), Positives = 106/243 (43%), Gaps = 4/243 (1%)
Frame = +3
Query: 576 VFLWDSGSSVGEIT--GHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGD 749
+ +W + E T GHN I+ V S RL + SDD ++ K T+
Sbjct: 65 IIIWGAYDGKYEKTLYGHNLEISDV-AWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKG 123
Query: 750 HSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDST 929
HS +V C F+P N + S D + I++ KTG+ + +L AH + A+ ++ +
Sbjct: 124 HSNYVFCCNFNPPSNLIISGSFDETVKIWEVKTGKCLKTL---SAHSDPVSAVHFNCSGS 180
Query: 930 HLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLSGYINYLDKN 1109
++S S D ++WD + T N + ++L+ +L + D +
Sbjct: 181 LIVSGSYDGLCRIWDAASGQCLKTLVDDDNPPVSFVKFSPNGKYILTATLDNTLKLWDYS 240
Query: 1110 NPSKPLRVIKGHSKSIQCLTVH--KNGGKSYIYSGSHDGHINYWDSETGENDSFAGKGHT 1283
+ L+ GH C+ + GGK +I SGS D + W+ +T E +GHT
Sbjct: 241 R-GRCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQTKEIVQKL-QGHT 297
Query: 1284 NQV 1292
+ V
Sbjct: 298 DVV 300
>ref|NP_758440.1| POC1 centriolar protein homolog B isoform a [Homo sapiens].
Length = 478
Score = 87.4 bits (215), Expect = 5e-17
Identities = 75/315 (23%), Positives = 130/315 (41%), Gaps = 5/315 (1%)
Frame = +3
Query: 324 DNPAVADIYTEHAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKI 503
++P + + H + +P+G +A+ L +W+ K H Y Y +
Sbjct: 6 EDPVLERYFKGHKAAITSLDLSPNGKQLATASWDTFLMLWNF--KPHARAYRYVGHKDVV 63
Query: 504 KDIAWTEDSKRIAVVGEGREKFGAVFLW--DSGSSVGEITGHNKVINSVDIKQSRPYRLA 677
+ ++ +A R V LW D E H + SVD + LA
Sbjct: 64 TSVQFSPHGNLLASASRDR----TVRLWIPDKRGKFSEFKAHTAPVRSVDFSADGQF-LA 118
Query: 678 TGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEK 857
T S+D + +F +++ H+ +V C +FSPDG + S D I I+D T K
Sbjct: 119 TASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWD--TTNK 176
Query: 858 VCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQL 1037
C + G + ++P T + SA D+T KVWDV VN ++ + + S +
Sbjct: 177 QC-VNNFSDSVGFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSG----GV 231
Query: 1038 GCLW---QKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSG 1208
C+ ++L++ S G + LD + + ++GH+ + TV + G SG
Sbjct: 232 NCISFHPSGNYLITASSDGTLKILDLLE-GRLIYTLQGHTGPV--FTVSFSKGGELFASG 288
Query: 1209 SHDGHINYWDSETGE 1253
D + W + E
Sbjct: 289 GADTQVLLWRTNFDE 303
Score = 55.1 bits (131), Expect = 3e-07
Identities = 63/293 (21%), Positives = 122/293 (41%), Gaps = 10/293 (3%)
Frame = +3
Query: 1140 GHSKSIQCLTVHKNGGKSYIYSGSHDGHINYW-DSETGENDSFAGKGHTNQVSRMTVDES 1316
GH + + +G + + S S D + W + G+ F K HT V +
Sbjct: 58 GHKDVVTSVQFSPHG--NLLASASRDRTVRLWIPDKRGKFSEF--KAHTAPVRSVDFSAD 113
Query: 1317 GQ-LVSCSMDDTVRYTSLSLRDYSGQGVVKLEVQPKCVAVGPGGYTVVVCI-GQIVLLKD 1490
GQ L + S D +++ S+ + + + + +C P G +V C + + + D
Sbjct: 114 GQFLATASEDKSIKVWSMYRQRFL-YSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWD 172
Query: 1491 --QRKCFS--IDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGSTLKDEGKLLEAKG 1658
++C + D+ G+ V +P G +A G+D V+++ + + L ++ G
Sbjct: 173 TTNKQCVNNFSDSVGFA-NFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQV--HSG 229
Query: 1659 PVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHFASG 1838
V +++ G +L + + + + +G + GH + +++S E FASG
Sbjct: 230 GVNCISFHPSGNYLITASSDGTLKILDLLEGRLIYTL-QGHTGPVFTVSFSKGGELFASG 288
Query: 1839 GMDMMVYVWTLSDPETRVK---IQDAHRLHHVSSLAWLDEHTLVTTSHDASVK 1988
G D V +W + E K ++ RLH S LD + H+ V+
Sbjct: 289 GADTQVLLWRTNFDELHCKGLTKRNLKRLHFDSPPHLLDIYPRTPHPHEEKVE 341
>ref|NP_060566.2| notchless protein homolog 1 isoform a [Homo sapiens].
Length = 485
Score = 86.3 bits (212), Expect = 1e-16
Identities = 94/432 (21%), Positives = 168/432 (38%), Gaps = 14/432 (3%)
Frame = +3
Query: 612 ITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDG 791
+ GH++ + SV + Y LA+GS D F++ FT H +V + +SPDG
Sbjct: 110 LEGHSEAVISVAFSPTGKY-LASGSGDTTVRFWDLSTETPHFTCKGHRHWVLSISWSPDG 168
Query: 792 NRFATASADGQIYIYDGKTGEKV-CSLGGSKAHDGGIYAISW-----SPDSTHLLSASGD 953
+ A+ +GQI ++D TG++V +L G H I +SW +P+ ++ S+S D
Sbjct: 169 RKLASGCKNGQILLWDPSTGKQVGRTLAG---HSKWITGLSWEPLHANPECRYVASSSKD 225
Query: 954 KTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLSGYINYLDKNNPSKPLRV 1133
+ ++WD + R+
Sbjct: 226 GSVRIWDTTA--------------------------------------------GRCERI 241
Query: 1134 IKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGE-NDSFAGKGHTNQVSRMTVD 1310
+ GH++S+ CL + GG +YS S D I W + G + G GH ++ D
Sbjct: 242 LTGHTQSVTCL---RWGGDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTD 298
Query: 1311 ---ESGQLVSCSMDDTVRYTSLSLRDYSGQGVVKLEV----QPKCVAVGPGGYTVVVCIG 1469
+G + SL++ + + + + P+ + G +T+ +
Sbjct: 299 YALRTGAFEPAEASVNPQDLQGSLQELKERALSRYNLVRGQGPERLVSGSDDFTLFLWSP 358
Query: 1470 QIVLLKDQRKCFSIDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGSTLKDEGKLLE 1649
+D++ + V P VA D +++L+ G T K L
Sbjct: 359 ----AEDKKPLTRMTGHQALINQVLFSPDSRIVASASFDKSIKLWD--GRTGKYLASLRG 412
Query: 1650 AKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHF 1829
V +A+S D L + + V+ V ++ GH ++ + WSPD +
Sbjct: 413 HVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLAMDL-PGHADEVYAVDWSPDGQRV 471
Query: 1830 ASGGMDMMVYVW 1865
ASGG D + +W
Sbjct: 472 ASGGKDKCLRIW 483
Score = 73.6 bits (179), Expect = 7e-13
Identities = 90/380 (23%), Positives = 151/380 (39%), Gaps = 6/380 (1%)
Frame = +3
Query: 879 KAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQKD 1058
+ H + ++++SP +L S SGD T + WD++ + T + + L W D
Sbjct: 111 EGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCKGHRHWV---LSISWSPD 167
Query: 1059 --HLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLT---VHKNGGKSYIYSGSHDGH 1223
L S +G I D + + R + GHSK I L+ +H N Y+ S S DG
Sbjct: 168 GRKLASGCKNGQILLWDPSTGKQVGRTLAGHSKWITGLSWEPLHANPECRYVASSSKDGS 227
Query: 1224 INYWDSETGENDSFAGKGHTNQVSRMTVDESGQLVSCSMDDTVRYTSLSLRDYSGQGVVK 1403
+ WD+ G + GHT V+ + G L S S D T++ + GV+
Sbjct: 228 VRIWDTTAGRCERIL-TGHTQSVTCLRWGGDGLLYSASQDRTIKVWR------AHDGVLC 280
Query: 1404 LEVQPKCVAVGPGGYTVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVHPGGETVAVGGA 1583
+Q G G + + + L D +++ +EP +V+P
Sbjct: 281 RTLQ------GHGHW-----VNTMALSTD----YALRTGAFEPAEASVNP---------Q 316
Query: 1584 DGNVRLYSILGSTLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSEN 1763
D L + L L+ +GP V+ S D ++S A+
Sbjct: 317 DLQGSLQELKERAL-SRYNLVRGQGPERLVSGSDDFTLF----------LWSPAEDKKPL 365
Query: 1764 NVFYGHHAKIVCLAWSPDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAW- 1940
GH A I + +SPD+ AS D + +W + ++ + V +AW
Sbjct: 366 TRMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRG--HVAAVYQIAWS 423
Query: 1941 LDEHTLVTTSHDASVKEWTI 2000
D LV+ S D+++K W +
Sbjct: 424 ADSRLLVSGSSDSTLKVWDV 443
Score = 63.2 bits (152), Expect = 1e-09
Identities = 95/428 (22%), Positives = 168/428 (39%), Gaps = 12/428 (2%)
Frame = +3
Query: 357 HAHQVVVAKYAPSGFYIASGDVSGKLRIWD-TTQKEHLLKYEYQPFAGKIKDIAWTEDSK 533
H+ V+ ++P+G Y+ASG +R WD +T+ H ++ + + I+W+ D +
Sbjct: 113 HSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCKGHRHW---VLSISWSPDGR 169
Query: 534 RIAVVGEGREKFGAVFLWD--SGSSVGE-ITGHNKVINSVDIK--QSRP--YRLATGSDD 692
++A K G + LWD +G VG + GH+K I + + + P +A+ S D
Sbjct: 170 KLA----SGCKNGQILLWDPSTGKQVGRTLAGHSKWITGLSWEPLHANPECRYVASSSKD 225
Query: 693 NCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLG 872
++ + + + H++ V C+R+ DG + +AS D I ++ G +L
Sbjct: 226 GSVRIWDTTAGRCERILTGHTQSVTCLRWGGDGLLY-SASQDRTIKVWRAHDGVLCRTLQ 284
Query: 873 GSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFTMGSNVLDQQLGCLWQ 1052
G H + ++ S D A + V ++ + + L + Q
Sbjct: 285 G---HGHWVNTMALSTDYALRTGAFEPAEASVNPQDLQGSLQ--ELKERALSRYNLVRGQ 339
Query: 1053 KDHLLSISLSGYINYL-DKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHIN 1229
L + +L KPL + GH I V + + S S D I
Sbjct: 340 GPERLVSGSDDFTLFLWSPAEDKKPLTRMTGHQALIN--QVLFSPDSRIVASASFDKSIK 397
Query: 1230 YWDSETGENDSFAGKGHTNQVSRMTVD-ESGQLVSCSMDDTVRYTSLSLRDYSGQGVVKL 1406
WD TG+ + + +GH V ++ +S LVS S D T++ + +
Sbjct: 398 LWDGRTGKYLA-SLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQK--------- 447
Query: 1407 EVQPKCVAVGPGGYTVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAV--HPGGETVAVGG 1580
++D PG+ EV AV P G+ VA GG
Sbjct: 448 --------------------------------LAMDLPGHADEVYAVDWSPDGQRVASGG 475
Query: 1581 ADGNVRLY 1604
D +R++
Sbjct: 476 KDKCLRIW 483
>ref|NP_079510.1| WD repeat-containing protein 61 [Homo sapiens].
Length = 305
Score = 81.3 bits (199), Expect = 4e-15
Identities = 59/199 (29%), Positives = 92/199 (46%)
Frame = +3
Query: 408 ASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKFGAVFLW 587
AS + +R+WD + + + P +A++ DS+ +A G K +F
Sbjct: 80 ASSSLDAHIRLWDLENGKQIKSIDAGPVDAWT--LAFSPDSQYLAT-GTHVGKVN-IFGV 135
Query: 588 DSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVN 767
+SG + K I S+ Y LA+G+ D F+ K T+ H+ +
Sbjct: 136 ESGKKEYSLDTRGKFILSIAYSPDGKY-LASGAIDGIINIFDIATGKLLHTLEGHAMPIR 194
Query: 768 CVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDSTHLLSAS 947
+ FSPD TAS DG I IYD + +L G H + +++ PD TH +S+S
Sbjct: 195 SLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG---HASWVLNVAFCPDDTHFVSSS 251
Query: 948 GDKTSKVWDVNVNSVVNTF 1004
DK+ KVWDV + V+TF
Sbjct: 252 SDKSVKVWDVGTRTCVHTF 270
Score = 56.6 bits (135), Expect = 9e-08
Identities = 35/112 (31%), Positives = 61/112 (54%)
Frame = +3
Query: 672 LATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTG 851
LATG+ F K ++++ +F+ + +SPDG A+ + DG I I+D TG
Sbjct: 121 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 180
Query: 852 EKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVNTFT 1007
+ + +L G H I ++++SPDS L++AS D K++DV ++ T +
Sbjct: 181 KLLHTLEG---HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS 229
Score = 51.6 bits (122), Expect = 3e-06
Identities = 56/246 (22%), Positives = 103/246 (41%), Gaps = 15/246 (6%)
Frame = +3
Query: 1173 HKNGGKSYIYSGSHDGHINYWDSETGEND-SFAGKGHTNQVSRMTVDESGQL---VSCSM 1340
+K + +GS D + W D ++ +GH Q+ ++VD S L S S+
Sbjct: 27 NKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGH--QLGVVSVDISHTLPIAASSSL 84
Query: 1341 DDTVRYTSLSLRDYSGQGVVKLEVQPK---CVAVGPGGYTVVVC--IGQIVL--LKDQRK 1499
D +R L +G+ + ++ P +A P + +G++ + ++ +K
Sbjct: 85 DAHIRLWDLE----NGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 140
Query: 1500 CFSIDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGSTLKDEGKLLEAKG----PVT 1667
+S+D G +A P G+ +A G DG + ++ I GKLL P+
Sbjct: 141 EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIA------TGKLLHTLEGHAMPIR 194
Query: 1668 DVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHFASGGMD 1847
+ +S D L + ++ V + GH + ++ +A+ PD+ HF S D
Sbjct: 195 SLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS-GHASWVLNVAFCPDDTHFVSSSSD 253
Query: 1848 MMVYVW 1865
V VW
Sbjct: 254 KSVKVW 259
>ref|NP_001186706.1| POC1 centriolar protein homolog B isoform b [Homo sapiens].
Length = 436
Score = 79.3 bits (194), Expect = 1e-14
Identities = 68/271 (25%), Positives = 112/271 (41%), Gaps = 5/271 (1%)
Frame = +3
Query: 456 KEHLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKFGAVFLW--DSGSSVGEITGHNK 629
K H Y Y + + ++ +A R V LW D E H
Sbjct: 6 KPHARAYRYVGHKDVVTSVQFSPHGNLLASASRDR----TVRLWIPDKRGKFSEFKAHTA 61
Query: 630 VINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATA 809
+ SVD + LAT S+D + +F +++ H+ +V C +FSPDG +
Sbjct: 62 PVRSVDFSADGQF-LATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSC 120
Query: 810 SADGQIYIYDGKTGEKVCSLGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNS 989
S D I I+D T K C + G + ++P T + SA D+T KVWDV VN
Sbjct: 121 SEDKTIKIWD--TTNKQC-VNNFSDSVGFANFVDFNPSGTCIASAGSDQTVKVWDVRVNK 177
Query: 990 VVNTFTMGSNVLDQQLGCLW---QKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQ 1160
++ + + S + C+ ++L++ S G + LD + + ++GH+ +
Sbjct: 178 LLQHYQVHSG----GVNCISFHPSGNYLITASSDGTLKILDLLE-GRLIYTLQGHTGPV- 231
Query: 1161 CLTVHKNGGKSYIYSGSHDGHINYWDSETGE 1253
TV + G SG D + W + E
Sbjct: 232 -FTVSFSKGGELFASGGADTQVLLWRTNFDE 261
Score = 58.9 bits (141), Expect = 2e-08
Identities = 52/212 (24%), Positives = 78/212 (36%)
Frame = +3
Query: 357 HAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKR 536
H H V AK++P G I S ++IWDTT K+ + + G + +
Sbjct: 101 HTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCV--NNFSDSVGFANFVDFNPSGTC 158
Query: 537 IAVVGEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEG 716
IA G + V +WD V ++ H +V
Sbjct: 159 IASAGSDQ----TVKVWD--VRVNKLLQHYQV---------------------------- 184
Query: 717 PPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHDGG 896
HS VNC+ F P GN TAS+DG + I D G + +L G H G
Sbjct: 185 -----------HSGGVNCISFHPSGNYLITASSDGTLKILDLLEGRLIYTLQG---HTGP 230
Query: 897 IYAISWSPDSTHLLSASGDKTSKVWDVNVNSV 992
++ +S+S S D +W N + +
Sbjct: 231 VFTVSFSKGGELFASGGADTQVLLWRTNFDEL 262
Score = 55.1 bits (131), Expect = 3e-07
Identities = 63/293 (21%), Positives = 122/293 (41%), Gaps = 10/293 (3%)
Frame = +3
Query: 1140 GHSKSIQCLTVHKNGGKSYIYSGSHDGHINYW-DSETGENDSFAGKGHTNQVSRMTVDES 1316
GH + + +G + + S S D + W + G+ F K HT V +
Sbjct: 16 GHKDVVTSVQFSPHG--NLLASASRDRTVRLWIPDKRGKFSEF--KAHTAPVRSVDFSAD 71
Query: 1317 GQ-LVSCSMDDTVRYTSLSLRDYSGQGVVKLEVQPKCVAVGPGGYTVVVCI-GQIVLLKD 1490
GQ L + S D +++ S+ + + + + +C P G +V C + + + D
Sbjct: 72 GQFLATASEDKSIKVWSMYRQRFL-YSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWD 130
Query: 1491 --QRKCFS--IDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILGSTLKDEGKLLEAKG 1658
++C + D+ G+ V +P G +A G+D V+++ + + L ++ G
Sbjct: 131 TTNKQCVNNFSDSVGFA-NFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQV--HSG 187
Query: 1659 PVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHFASG 1838
V +++ G +L + + + + +G + GH + +++S E FASG
Sbjct: 188 GVNCISFHPSGNYLITASSDGTLKILDLLEGRLIYTL-QGHTGPVFTVSFSKGGELFASG 246
Query: 1839 GMDMMVYVWTLSDPETRVK---IQDAHRLHHVSSLAWLDEHTLVTTSHDASVK 1988
G D V +W + E K ++ RLH S LD + H+ V+
Sbjct: 247 GADTQVLLWRTNFDELHCKGLTKRNLKRLHFDSPPHLLDIYPRTPHPHEEKVE 299
>ref|NP_849143.1| WD repeat-containing protein 69 [Homo sapiens].
Length = 415
Score = 78.2 bits (191), Expect = 3e-14
Identities = 58/208 (27%), Positives = 92/208 (44%), Gaps = 2/208 (0%)
Frame = +3
Query: 357 HAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKR 536
H ++V + P +A+G + ++WD E + Y + + +I +++ R
Sbjct: 176 HTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQNGEEV--YTLRGHSAEIISLSFNTSGDR 233
Query: 537 IAVVGEGREKFGAVFLWDS--GSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFF 710
I + G V +WD+ G V + GH I+S L TGS D +
Sbjct: 234 I-ITGSFDH---TVVVWDADTGRKVNILIGHCAEISSASFNWDCSLIL-TGSMDKTCKLW 288
Query: 711 EGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKAHD 890
+ K T+ H + F G ATASADG I+ T + + L G H+
Sbjct: 289 DATNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEG---HE 345
Query: 891 GGIYAISWSPDSTHLLSASGDKTSKVWD 974
G I IS++P HLL+ S DKT+++WD
Sbjct: 346 GEISKISFNPQGNHLLTGSSDKTARIWD 373
Score = 75.9 bits (185), Expect = 1e-13
Identities = 70/301 (23%), Positives = 121/301 (40%), Gaps = 43/301 (14%)
Frame = +3
Query: 582 LWD--SGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHS 755
LWD SG + + GH V+ ++ ++ATGS D + K T H+
Sbjct: 118 LWDTASGEELNTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHT 177
Query: 756 RFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCSLGGSKA----------------- 884
+ C+ F+P AT S D ++D + GE+V +L G A
Sbjct: 178 AEIVCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRIITG 237
Query: 885 ----------------------HDGGIYAISWSPDSTHLLSASGDKTSKVWDVNVNSVVN 998
H I + S++ D + +L+ S DKT K+WD V
Sbjct: 238 SFDHTVVVWDADTGRKVNILIGHCAEISSASFNWDCSLILTGSMDKTCKLWDATNGKCVA 297
Query: 999 TFT-MGSNVLDQQLGCLWQKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVH 1175
T T +LD C L++ + + + K + ++GH I ++ +
Sbjct: 298 TLTGHDDEILD---SCFDYTGKLIATASADGTARIFSAATRKCIAKLEGHEGEISKISFN 354
Query: 1176 KNGGKSYIYSGSHDGHINYWDSETGENDSFAGKGHTNQVSRMTVDESGQLV-SCSMDDTV 1352
G +++ +GS D WD++TG+ +GHT+++ + G +V + S D+T
Sbjct: 355 PQG--NHLLTGSSDKTARIWDAQTGQCLQVL-EGHTDEIFSCAFNYKGNIVITGSKDNTC 411
Query: 1353 R 1355
R
Sbjct: 412 R 412
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 80,839,418
Number of extensions: 2186306
Number of successful extensions: 12029
Number of sequences better than 1.0e-05: 107
Number of HSP's gapped: 11020
Number of HSP's successfully gapped: 193
Length of query: 734
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 624
Effective length of database: 14,671,124
Effective search space: 9154781376
Effective search space used: 9154781376
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007604
(2204 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896531.2| Sus scrofa unplaced genomic scaffold ChrUScaf4415 466 e-128
>gb|GL896531.2| Sus scrofa unplaced genomic scaffold ChrUScaf4415
Length = 341189
Score = 466 bits (235), Expect = e-128
Identities = 235/235 (100%)
Strand = Plus / Minus
Query: 906 atcagctggagtcctgatagcactcacttgctctccgcttccggagacaaaacctctaaa 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23545 atcagctggagtcctgatagcactcacttgctctccgcttccggagacaaaacctctaaa 23486
Query: 966 gtttgggacgtcaatgtcaactctgtggtcaacacgtttaccatgggctccaacgtcctg 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23485 gtttgggacgtcaatgtcaactctgtggtcaacacgtttaccatgggctccaacgtcctg 23426
Query: 1026 gaccagcagctgggctgcttgtggcagaaggaccacctcctcagcatctccctgtccggc 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23425 gaccagcagctgggctgcttgtggcagaaggaccacctcctcagcatctccctgtccggc 23366
Query: 1086 tacatcaattacctggacaagaacaaccccagcaaacccctgcgggtcatcaagg 1140
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23365 tacatcaattacctggacaagaacaaccccagcaaacccctgcgggtcatcaagg 23311
Score = 347 bits (175), Expect = 2e-92
Identities = 175/175 (100%)
Strand = Plus / Minus
Query: 1584 gacgggaacgtccgcctctactccatcctgggctccacgctgaaggacgagggcaagctc 1643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12911 gacgggaacgtccgcctctactccatcctgggctccacgctgaaggacgagggcaagctc 12852
Query: 1644 ctggaggccaagggccccgtgaccgacgtggcctattcccacgacggcgccttcctcgcc 1703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12851 ctggaggccaagggccccgtgaccgacgtggcctattcccacgacggcgccttcctcgcc 12792
Query: 1704 gtgtgtgacgccagcaaagtggtcacggttttcagcgttgctgacggctactcgg 1758
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12791 gtgtgtgacgccagcaaagtggtcacggttttcagcgttgctgacggctactcgg 12737
Score = 289 bits (146), Expect = 3e-75
Identities = 146/146 (100%)
Strand = Plus / Minus
Query: 1757 ggagaacaacgtcttctatggacaccacgccaagatcgtctgcctggcctggtccccaga 1816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11181 ggagaacaacgtcttctatggacaccacgccaagatcgtctgcctggcctggtccccaga 11122
Query: 1817 caacgagcactttgcctcgggcggcatggacatgatggtgtacgtgtggaccctcagtga 1876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11121 caacgagcactttgcctcgggcggcatggacatgatggtgtacgtgtggaccctcagtga 11062
Query: 1877 ccccgagaccagggtcaagatccaag 1902
||||||||||||||||||||||||||
Sbjct: 11061 ccccgagaccagggtcaagatccaag 11036
Score = 268 bits (135), Expect = 1e-68
Identities = 150/154 (97%), Gaps = 2/154 (1%)
Strand = Plus / Minus
Query: 416 agatgtatctgggaagctgaggatctgggacaccacgcagaaggagcacctcttgaagta 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33089 agatgtatctgggaagctgaggatctgggacaccacgcagaaggagcacctcttgaagta 33030
Query: 476 cgagtaccagcctttcgctgggaagatcaaggacattg--cttggacggaagacagtaag 533
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 33029 cgagtaccagcctttcgctgggaagatcaaggacattgcncttggacggaagacagacag 32970
Query: 534 aggatcgcagtggtcggggaaggacgggagaagt 567
||||||||||||||||||||||||||||||||||
Sbjct: 32969 aggatcgcagtggtcggggaaggacgggagaagt 32936
Score = 236 bits (119), Expect = 4e-59
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 1266 gccgggaagggccacacgaaccaggtgtccaggatgaccgtggacgagtcggggcagctg 1325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19628 gccgggaagggccacacgaaccaggtgtccaggatgaccgtggacgagtcggggcagctg 19569
Query: 1326 gtgagctgcagcatggacgacacagtgcggtacaccagcctctcgctgcgggactacag 1384
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19568 gtgagctgcagcatggacgacacagtgcggtacaccagcctctcgctgcgggactacag 19510
Score = 182 bits (92), Expect = 5e-43
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 1381 acagcgggcagggggtcgtgaaactggaggttcagccgaagtgcgtggccgtggggcccg 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17730 acagcgggcagggggtcgtgaaactggaggttcagccgaagtgcgtggccgtggggcccg 17671
Query: 1441 ggggctacaccgtggtcgtgtgcatcgggcag 1472
||||||||||||||||||||||||||||||||
Sbjct: 17670 ggggctacaccgtggtcgtgtgcatcgggcag 17639
Score = 182 bits (92), Expect = 5e-43
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 1138 agggtcacagcaaatccatccagtgcctgacggtgcataaaaacggcggcaagtcgtaca 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21537 agggtcacagcaaatccatccagtgcctgacggtgcataaaaacggcggcaagtcgtaca 21478
Query: 1198 tctactctgggagccacgacggacacattaat 1229
||||||||||||||||||||||||||||||||
Sbjct: 21477 tctactctgggagccacgacggacacattaat 21446
Score = 180 bits (91), Expect = 2e-42
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 327 aacccggccgtggctgacatctacacggagcacgcccatcaggtggtggtggccaagtac 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37998 aacccggccgtggctgacatctacacggagcacgcccatcaggtggtggtggccaagtac 37939
Query: 387 gcgcccagcggcttctacatcgcctctggag 417
|||||||||||||||||||||||||||||||
Sbjct: 37938 gcgcccagcggcttctacatcgcctctggag 37908
Score = 168 bits (85), Expect = 8e-39
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 1471 agatcgtcctgctgaaggaccagaggaagtgcttcagtatcgacaaccccggctacgagc 1530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14369 agatcgtcctgctgaaggaccagaggaagtgcttcagtatcgacaaccccggctacgagc 14310
Query: 1531 ccgaagtggtggcggtgcaccccgg 1555
|||||||||||||||||||||||||
Sbjct: 14309 ccgaagtggtggcggtgcaccccgg 14285
Score = 168 bits (85), Expect = 8e-39
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 566 gttcggcgccgtcttcctgtgggacagcggctcctctgtgggcgagatcacggggcacaa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31758 gttcggcgccgtcttcctgtgggacagcggctcctctgtgggcgagatcacggggcacaa 31699
Query: 626 caaagtcatcaacagcgtggacatc 650
|||||||||||||||||||||||||
Sbjct: 31698 caaagtcatcaacagcgtggacatc 31674
Score = 165 bits (83), Expect = 1e-37
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 823 agatctacatctatgacgggaagacgggagagaaggtgtgctcgctgggaggaagcaagg 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23893 agatctacatctatgacgggaagacgggagagaaggtgtgctcgctgggaggaagcaagg 23834
Query: 883 ctcacgacggcggcatctatgct 905
|||||||||||||||||||||||
Sbjct: 23833 ctcacgacggcggcatctatgct 23811
Score = 147 bits (74), Expect = 3e-32
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 674 ggcgactggcagcgacgacaactgcgccgcgttctttgaggggccaccgttcaagttcaa 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31573 ggcgactggcagcgacgacaactgcgccgcgttctttgaggggccaccgttcaagttcaa 31514
Query: 734 gttcacaattggag 747
||||||||||||||
Sbjct: 31513 gttcacaattggag 31500
Score = 123 bits (62), Expect = 4e-25
Identities = 65/66 (98%)
Strand = Plus / Minus
Query: 2000 ctcctactgaggagccctcctcggaggacccaatcagggactcggttgatcgcagctcag 2059
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9267 ctccttctgaggagccctcctcggaggacccaatcagggactcggttgatcgcagctcag 9208
Query: 2060 tcactc 2065
||||||
Sbjct: 9207 tcactc 9202
Score = 77.8 bits (39), Expect = 2e-11
Identities = 39/39 (100%)
Strand = Plus / Minus
Query: 288 tacaccaatggaaagtgcgtcatcctaaggaacatcgac 326
|||||||||||||||||||||||||||||||||||||||
Sbjct: 50001 tacaccaatggaaagtgcgtcatcctaaggaacatcgac 49963
Score = 60.0 bits (30), Expect = 5e-06
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 1901 agatgcgcaccggctccaccacgtgagcag 1930
||||||||||||||||||||||||||||||
Sbjct: 9397 agatgcgcaccggctccaccacgtgagcag 9368
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 43,939,389
Number of extensions: 201
Number of successful extensions: 201
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 15
Length of query: 2204
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2182
Effective length of database: 2,808,408,574
Effective search space: 6127947508468
Effective search space used: 6127947508468
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)