Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007656
(1471 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001076984.1| transmembrane protein 87A [Bos taurus]. 774 0.0
Alignment gi|XP_002691201.1| PREDICTED: transmembrane protein 87B [Bos ta... 372 e-103
Alignment gi|XP_875413.3| PREDICTED: transmembrane protein 87B [Bos tauru... 366 e-101
Alignment gi|NP_001092634.1| protein GPR107 [Bos taurus]. 51 2e-06
Alignment gi|NP_001068801.1| protein GPR108 precursor [Bos taurus]. 50 4e-06
>ref|NP_001076984.1| transmembrane protein 87A [Bos taurus].
Length = 555
Score = 774 bits (1999), Expect = 0.0
Identities = 395/473 (83%), Positives = 410/473 (86%)
Frame = +2
Query: 53 MASAAWXXXXXXXXXXXXGAPTSPLSHFGVGPASVAAADRSKWRIPISLGKNYFSFGKIL 232
MA AAW GA TSPLS F VGPA VAAA+RSKW IPI KNYFSFGKIL
Sbjct: 1 MAVAAWLQVVPVILLLL-GARTSPLSLFSVGPAPVAAAERSKWHIPIPSAKNYFSFGKIL 59
Query: 233 FKNTTIFLKFDGEPCDVSLNITWYLKSADCYNEIYNFKTEEVETYLENLKEKKGLSGKYQ 412
FKNTTIFLKFDGEPCD SLNITWYLKSADCYNEIYNFK EEV+TYLENLKEKKGLSGKY+
Sbjct: 60 FKNTTIFLKFDGEPCDASLNITWYLKSADCYNEIYNFKLEEVDTYLENLKEKKGLSGKYE 119
Query: 413 TSSKLFQNCSELFKAQSFSGEFIHRLPLLGEKQESKENGTNLTVTGDKTVMHDPLKTWQD 592
TSSKLFQNCSELFKAQSFSG+F+HRLPLLGE+QE+KENGTNLT TGDKTVMHDPLKTWQD
Sbjct: 120 TSSKLFQNCSELFKAQSFSGDFVHRLPLLGERQEAKENGTNLTFTGDKTVMHDPLKTWQD 179
Query: 593 APYIFIVHVGIXXXXXXXXXXXXXXLFTMTVEVKGPYEYLTLEDYPLMIFFMVMCIVYVL 772
APYIFIVHVGI LFTMTVEVKGPYEYLTLE+YPLMIFFMVMCIVYVL
Sbjct: 180 APYIFIVHVGISSSKESSKENSRSTLFTMTVEVKGPYEYLTLEEYPLMIFFMVMCIVYVL 239
Query: 773 FGVLWLAWSACYWRDLLRIQFWIGAVIFLGMLEKAVFYAEFQNIRYKGESVQGALILAEL 952
FGVLWLAWSACYWRDLLRIQFWIGAVIFLGMLEKAVFYAEFQNIRYKGESVQGALILAEL
Sbjct: 240 FGVLWLAWSACYWRDLLRIQFWIGAVIFLGMLEKAVFYAEFQNIRYKGESVQGALILAEL 299
Query: 953 LSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTGHFSYP 1132
LSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTG
Sbjct: 300 LSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTG-AQTD 358
Query: 1133 LALIVNLALSAINACIILWIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAASIVF 1312
LA + + L+ ++ + WIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAASIVF
Sbjct: 359 LASLAFIPLAFLDTALCWWIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAASIVF 418
Query: 1313 IIWTTMKFXIVTCQSDWRELWVDDAIWAXAISMIPLVIMXLWRTSAKHQSFAF 1471
IIWTTMKF IVTCQSDWRELWVDDAIW SMI VIM LWR SA +Q FAF
Sbjct: 419 IIWTTMKFRIVTCQSDWRELWVDDAIWRLLFSMILFVIMVLWRPSANNQRFAF 471
>ref|XP_002691201.1| PREDICTED: transmembrane protein 87B [Bos taurus].
Length = 595
Score = 372 bits (954), Expect = e-103
Identities = 208/449 (46%), Positives = 271/449 (60%), Gaps = 6/449 (1%)
Frame = +2
Query: 143 GPASVAAADR-SKWRIPISLGKNYFSFGKILFKNTTIFLKFDGEPCD--VSLNITWYLKS 313
GPA+V A W IS F K +F +T I C V I W+L+
Sbjct: 74 GPAAVGAVPEIGLWTATISDKSGPLIFRKTMFNSTEIKFSVKSFSCPRTVKFTIEWHLEH 133
Query: 314 ADCYNEIYNFKTEEVETYLENLKEKKGLSGKYQTSSKLFQNCSELFKAQSFS---GEFIH 484
C+N+ + LE L +K L F+N SE + ++ + G +
Sbjct: 134 HTCHNDY---------SELEELSQKHELPVTEDFCGHYFKN-SECWTTKNENVECGGDLQ 183
Query: 485 RLPLLGEKQESKENGTNLTVTGDKTVMHDPLKTWQDAPYIFIVHVGIXXXXXXXXXXXXX 664
P L KQ G G V+ KT +D +IFIV V
Sbjct: 184 LFPPLNNKQLISNTGNVSNQEGSTDVV---AKTQRDGFHIFIVSVKTEKTDASWN----- 235
Query: 665 XLFTMTVEVKGPYEYLTLEDYPLMIFFMVMCIVYVLFGVLWLAWSACYWRDLLRIQFWIG 844
+++ + GPY Y++ D+PLMIF+MVMCIVY+L+GVLWL WSACYW+D+LRIQFWI
Sbjct: 236 --LNVSLSMLGPYGYISASDWPLMIFYMVMCIVYILYGVLWLMWSACYWKDILRIQFWIA 293
Query: 845 AVIFLGMLEKAVFYAEFQNIRYKGESVQGALILAELLSAVKRSLARTLVIIVSLGYGIVK 1024
AVIFLGMLEKAVFYAE+QNI G S QG LI AEL+SA+KR+LAR LVIIVSLGYGIVK
Sbjct: 294 AVIFLGMLEKAVFYAEYQNINSTGLSTQGLLIFAELISAIKRTLARLLVIIVSLGYGIVK 353
Query: 1025 PRLGVTLHKVVVAGALYLLFSGMEGVLRVTGHFSYPLALIVNLALSAINACIILWIFISL 1204
PRLG +H+V+ G LY +F+ +EGV+RV G ++ ++ ++ L+ I++ + +IFISL
Sbjct: 354 PRLGTVMHRVIGLGVLYFIFAAVEGVMRVIGGSNHLAVVLGDIILALIDSIFVWFIFISL 413
Query: 1205 TQTMKLLKLRRNIVKLSLYRHFTNTLILAVAASIVFIIWTTMKFXIVTCQSDWRELWVDD 1384
QTMK L+LR+N VK SLYRHFTNTLI A+ AS+VF++WTT F CQSDW E WVDD
Sbjct: 414 AQTMKTLRLRKNTVKFSLYRHFTNTLIFAILASVVFMVWTTKTFRFAKCQSDWMERWVDD 473
Query: 1385 AIWAXAISMIPLVIMXLWRTSAKHQSFAF 1471
A W+ S+I +VIM LWR SA +Q +AF
Sbjct: 474 AFWSFLFSLILIVIMFLWRPSANNQRYAF 502
>ref|XP_875413.3| PREDICTED: transmembrane protein 87B [Bos taurus].
Length = 538
Score = 366 bits (939), Expect = e-101
Identities = 206/440 (46%), Positives = 270/440 (61%), Gaps = 3/440 (0%)
Frame = +2
Query: 161 AADRSKWRIPISLGKNYFSFGKILFKNTTIFLKFDGEPCDVSLNITWYLKSADCYNEIYN 340
AADR K P+ K F+ +I F +K P V I W+L+ C+N+
Sbjct: 32 AADRQKSG-PLIFRKTMFNSTEIKFS-----VKSFSCPRTVKFTIEWHLEHHTCHNDY-- 83
Query: 341 FKTEEVETYLENLKEKKGLSGKYQTSSKLFQNCSELFKAQSFS---GEFIHRLPLLGEKQ 511
+ LE L +K L F+N SE + ++ + G + P L KQ
Sbjct: 84 -------SELEELSQKHELPVTEDFCGHYFKN-SECWTTKNENVECGGDLQLFPPLNNKQ 135
Query: 512 ESKENGTNLTVTGDKTVMHDPLKTWQDAPYIFIVHVGIXXXXXXXXXXXXXXLFTMTVEV 691
G G V+ KT +D +IFIV V +++ +
Sbjct: 136 LISNTGNVSNQEGSTDVV---AKTQRDGFHIFIVSVKTEKTDASWN-------LNVSLSM 185
Query: 692 KGPYEYLTLEDYPLMIFFMVMCIVYVLFGVLWLAWSACYWRDLLRIQFWIGAVIFLGMLE 871
GPY Y++ D+PLMIF+MVMCIVY+L+GVLWL WSACYW+D+LRIQFWI AVIFLGMLE
Sbjct: 186 LGPYGYISASDWPLMIFYMVMCIVYILYGVLWLMWSACYWKDILRIQFWIAAVIFLGMLE 245
Query: 872 KAVFYAEFQNIRYKGESVQGALILAELLSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHK 1051
KAVFYAE+QNI G S QG LI AEL+SA+KR+LAR LVIIVSLGYGIVKPRLG +H+
Sbjct: 246 KAVFYAEYQNINSTGLSTQGLLIFAELISAIKRTLARLLVIIVSLGYGIVKPRLGTVMHR 305
Query: 1052 VVVAGALYLLFSGMEGVLRVTGHFSYPLALIVNLALSAINACIILWIFISLTQTMKLLKL 1231
V+ G LY +F+ +EGV+RV G ++ ++ ++ L+ I++ + +IFISL QTMK L+L
Sbjct: 306 VIGLGVLYFIFAAVEGVMRVIGGSNHLAVVLGDIILALIDSIFVWFIFISLAQTMKTLRL 365
Query: 1232 RRNIVKLSLYRHFTNTLILAVAASIVFIIWTTMKFXIVTCQSDWRELWVDDAIWAXAISM 1411
R+N VK SLYRHFTNTLI A+ AS+VF++WTT F CQSDW E WVDDA W+ S+
Sbjct: 366 RKNTVKFSLYRHFTNTLIFAILASVVFMVWTTKTFRFAKCQSDWMERWVDDAFWSFLFSL 425
Query: 1412 IPLVIMXLWRTSAKHQSFAF 1471
I +VIM LWR SA +Q +AF
Sbjct: 426 ILIVIMFLWRPSANNQRYAF 445
>ref|NP_001092634.1| protein GPR107 [Bos taurus].
Length = 566
Score = 51.2 bits (121), Expect = 2e-06
Identities = 45/211 (21%), Positives = 88/211 (41%), Gaps = 11/211 (5%)
Frame = +2
Query: 671 FTMTVEV--KGPYEYLTLEDYPLMIFFMVMCIVYVLFGVLWLAWSACYWRDLLRIQFWIG 844
F++ +E+ K P YL+ + PL ++ M + L G +W+ D+ +I + +
Sbjct: 244 FSLDIEITEKNPDSYLSAGEIPLPKLYISMAFFFFLSGTIWIHILRKRRNDVFKIHWLMA 303
Query: 845 AVIFLGMLEKAVFYAEFQNIRYKGESVQGALILAELLSAVKRSLARTLVIIVSLGYGIVK 1024
A+ F L ++ I +G ++G ++ + +K +L + ++ G+ +K
Sbjct: 304 ALPFTKSLSLVFHAIDYHYISSQGFPIEGWAVVYYITHLLKGALLFITIALIGTGWAFIK 363
Query: 1025 PRLG--------VTLHKVVVAGALYLLFSGMEGVLRVTGHFSYPLALIVNLALSAINACI 1180
L V + V+A Y++ E G + L L+ L AI
Sbjct: 364 HILSDKDKKVFMVVIPLQVLANVAYIIIESTEEGTTEYGLWKDSLFLVDLLCCGAI-LFP 422
Query: 1181 ILWIFISLTQTMKL-LKLRRNIVKLSLYRHF 1270
++W L + K N+ KL L+RH+
Sbjct: 423 VVWSIRHLQEASATDGKAAINLAKLKLFRHY 453
>ref|NP_001068801.1| protein GPR108 precursor [Bos taurus].
Length = 548
Score = 50.4 bits (119), Expect = 4e-06
Identities = 41/208 (19%), Positives = 86/208 (41%), Gaps = 9/208 (4%)
Frame = +2
Query: 674 TMTVEVKGPYEYLTLEDYPLMIFFMVMCIVYVLFGVLWLAWSACYWRDLLRIQFWIGAVI 853
T+ + K P YL+ + PL +MVM ++ G+ W++ ++ +I + + A+
Sbjct: 246 TVMIREKNPEGYLSAAEIPLFKLYMVMSACFLGAGIFWVSILCKNTYNVFKIHWLMAALT 305
Query: 854 FLGMLEKAVFYAEFQNIRYKGESVQGALILAELLSAVKRSLARTLVIIVSLGYGIVKPRL 1033
F + + I +G ++G ++ + +K +L + ++ G+ VK L
Sbjct: 306 FTKSVSLLFHSINYYFINSQGHPIEGLAVMHYITHLLKGALLFITIALIGSGWAFVKYVL 365
Query: 1034 --------GVTLHKVVVAGALYLLFSGMEGVLRVTGHFSYPLALIVNLALSAINACIILW 1189
G+ + V+A Y++ E G + + +V+L ++W
Sbjct: 366 SDKEKKIFGIVIPLQVLANVAYIVMESREEGASDYGIWK-EILFLVDLICCGTILFPVVW 424
Query: 1190 IFISLTQTMKL-LKLRRNIVKLSLYRHF 1270
L K+ N+ KL L+RH+
Sbjct: 425 SIRHLQDASGTDGKVAVNLAKLKLFRHY 452
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,202,129
Number of extensions: 1311780
Number of successful extensions: 3718
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3710
Number of HSP's successfully gapped: 5
Length of query: 490
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 384
Effective length of database: 14,174,046
Effective search space: 5442833664
Effective search space used: 5442833664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007656
(1471 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851056.1| PREDICTED: similar to CG17660-PA [Canis familia... 775 0.0
Alignment gi|XP_854588.1| PREDICTED: similar to CG17660-PA [Canis familia... 363 e-100
Alignment gi|XP_537814.2| PREDICTED: similar to G protein-coupled recepto... 51 3e-06
>ref|XP_851056.1| PREDICTED: similar to CG17660-PA [Canis familiaris].
Length = 555
Score = 775 bits (2000), Expect = 0.0
Identities = 394/473 (83%), Positives = 410/473 (86%)
Frame = +2
Query: 53 MASAAWXXXXXXXXXXXXGAPTSPLSHFGVGPASVAAADRSKWRIPISLGKNYFSFGKIL 232
MA+AAW GA SPLS GVGPA VAAADRSKW IP+ GKNYFSFGKIL
Sbjct: 1 MAAAAWLQVLPIILLLL-GAQPSPLSLLGVGPAPVAAADRSKWHIPMPSGKNYFSFGKIL 59
Query: 233 FKNTTIFLKFDGEPCDVSLNITWYLKSADCYNEIYNFKTEEVETYLENLKEKKGLSGKYQ 412
FKNTT+FLKFDGEPCDVSLNITWYLKSADCYNEIYNFK EEVETYLENLKEKKGLSGKYQ
Sbjct: 60 FKNTTVFLKFDGEPCDVSLNITWYLKSADCYNEIYNFKGEEVETYLENLKEKKGLSGKYQ 119
Query: 413 TSSKLFQNCSELFKAQSFSGEFIHRLPLLGEKQESKENGTNLTVTGDKTVMHDPLKTWQD 592
TSSKLFQNCSELFKAQSFSG+ +HRLPLLGEKQE+KENGTNLT+TGDKT MHDPLKTWQD
Sbjct: 120 TSSKLFQNCSELFKAQSFSGDSVHRLPLLGEKQEAKENGTNLTLTGDKTAMHDPLKTWQD 179
Query: 593 APYIFIVHVGIXXXXXXXXXXXXXXLFTMTVEVKGPYEYLTLEDYPLMIFFMVMCIVYVL 772
APYIFIVH+G LFTMTVEVKGPYEYLTLE+YPLMIFFMVMCIVYVL
Sbjct: 180 APYIFIVHIGFSSSKESSKENSLSNLFTMTVEVKGPYEYLTLEEYPLMIFFMVMCIVYVL 239
Query: 773 FGVLWLAWSACYWRDLLRIQFWIGAVIFLGMLEKAVFYAEFQNIRYKGESVQGALILAEL 952
FGVLWLAWSACYWRDLLRIQFWIGAVIFLGMLEKAVFYAEFQNIRYKGESVQGALILAEL
Sbjct: 240 FGVLWLAWSACYWRDLLRIQFWIGAVIFLGMLEKAVFYAEFQNIRYKGESVQGALILAEL 299
Query: 953 LSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTGHFSYP 1132
LSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTG
Sbjct: 300 LSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTG-AQTD 358
Query: 1133 LALIVNLALSAINACIILWIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAASIVF 1312
LA + + L+ ++ + WIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAASIVF
Sbjct: 359 LASLAFIPLAFLDTALCWWIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAASIVF 418
Query: 1313 IIWTTMKFXIVTCQSDWRELWVDDAIWAXAISMIPLVIMXLWRTSAKHQSFAF 1471
IIWTTMKF IVTCQSDWRELWVDDAIW SMI VIM LWR SA +Q FAF
Sbjct: 419 IIWTTMKFRIVTCQSDWRELWVDDAIWRLLFSMILFVIMVLWRPSANNQRFAF 471
>ref|XP_854588.1| PREDICTED: similar to CG17660-PA [Canis familiaris].
Length = 556
Score = 363 bits (931), Expect = e-100
Identities = 210/461 (45%), Positives = 274/461 (59%), Gaps = 10/461 (2%)
Frame = +2
Query: 119 SPLSHFGV-----GPASVAAA-DRSKWRIPISLGKNYFSFGKILFKNTTIFLKFDGEPCD 280
+PL H + PA V+A + W + F K +F +T I C
Sbjct: 21 APLLHVALCLSCWAPAVVSAVPELGLWAATVDDKSGPLIFRKTMFNSTEIKFSVKSFSCS 80
Query: 281 --VSLNITWYLKSADCYNEIYNFKTEEVETYLENLKEKKGLSGKYQTSSKLFQNCSELFK 454
V I W+LK C NE K EE + +L + L G Y + + + E
Sbjct: 81 GPVKFTIEWHLKYHTCQNEYS--KLEEELSQKHDLSVDEDLCGHYFKNIECWTTKYENLD 138
Query: 455 AQSFSGEFIHRLPLLGEKQE--SKENGTNLTVTGDKTVMHDPLKTWQDAPYIFIVHVGIX 628
S F P L K+ + +N +N + D +T +D +IFIV +
Sbjct: 139 CNSDLQVF----PSLNNKEPVTNTKNVSNQERSTDVVA-----RTQRDGFHIFIVSIKTE 189
Query: 629 XXXXXXXXXXXXXLFTMTVEVKGPYEYLTLEDYPLMIFFMVMCIVYVLFGVLWLAWSACY 808
+++ + GP+ Y++ D+PLMIF+MVMCIVY+L+GVLWL WSACY
Sbjct: 190 KTDARWN-------LNVSLSMIGPHGYISASDWPLMIFYMVMCIVYILYGVLWLMWSACY 242
Query: 809 WRDLLRIQFWIGAVIFLGMLEKAVFYAEFQNIRYKGESVQGALILAELLSAVKRSLARTL 988
W+D+LRIQFWI AVIFLGMLEKAVFY E+QNI G S QG LI AEL+SAVKR+LAR L
Sbjct: 243 WKDILRIQFWIAAVIFLGMLEKAVFYTEYQNISSTGLSTQGLLIFAELISAVKRTLARLL 302
Query: 989 VIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTGHFSYPLALIVNLALSAI 1168
VIIVSLGYGIVKPRLG +H+VV G LY +F+ +EGV+RV G ++ + ++ L+ I
Sbjct: 303 VIIVSLGYGIVKPRLGTVMHRVVGLGILYFIFAAIEGVMRVIGGSNHLAVIFGDIILAVI 362
Query: 1169 NACIILWIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAASIVFIIWTTMKFXIVT 1348
++ + +IFISL QTMK L+LR+N VK SLYRHFTNTLI AV ASIVF++WTT F I
Sbjct: 363 DSIFVWFIFISLAQTMKTLRLRKNTVKFSLYRHFTNTLIFAVLASIVFMVWTTKTFRIAK 422
Query: 1349 CQSDWRELWVDDAIWAXAISMIPLVIMXLWRTSAKHQSFAF 1471
CQSDW E WVDDA W+ S+I +VIM LWR SA +Q +AF
Sbjct: 423 CQSDWMERWVDDAFWSFLFSLILIVIMFLWRPSANNQRYAF 463
>ref|XP_537814.2| PREDICTED: similar to G protein-coupled receptor 107 [Canis
familiaris].
Length = 610
Score = 50.8 bits (120), Expect = 3e-06
Identities = 44/211 (20%), Positives = 88/211 (41%), Gaps = 11/211 (5%)
Frame = +2
Query: 671 FTMTVEV--KGPYEYLTLEDYPLMIFFMVMCIVYVLFGVLWLAWSACYWRDLLRIQFWIG 844
F++ +E+ K P YL+ + PL ++ M + L G +W+ D+ +I + +
Sbjct: 299 FSLDIEITEKNPDSYLSAGEIPLPKLYISMAFFFFLSGTIWIHILRKRRNDVFKIHWLMA 358
Query: 845 AVIFLGMLEKAVFYAEFQNIRYKGESVQGALILAELLSAVKRSLARTLVIIVSLGYGIVK 1024
A+ F L ++ I +G ++G ++ + +K +L + ++ G+ +K
Sbjct: 359 ALPFTKSLSLVFHAIDYHYISSQGFPIEGWAVVYYITHLLKGALLFITIALIGTGWAFIK 418
Query: 1025 PRLG--------VTLHKVVVAGALYLLFSGMEGVLRVTGHFSYPLALIVNLALSAINACI 1180
L + + V+A Y++ E G + L L+ L AI
Sbjct: 419 HILSDKDKKIFMIVIPLQVLANVAYIIIESTEEGTTEYGLWKDSLFLVDLLCCGAI-LFP 477
Query: 1181 ILWIFISLTQTMKL-LKLRRNIVKLSLYRHF 1270
++W L + K N+ KL L+RH+
Sbjct: 478 VVWSIRHLQEASATDGKAAINLAKLKLFRHY 508
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 54,556,344
Number of extensions: 1356300
Number of successful extensions: 3869
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3864
Number of HSP's successfully gapped: 3
Length of query: 490
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 383
Effective length of database: 15,307,552
Effective search space: 5862792416
Effective search space used: 5862792416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007656
(1471 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776095.2| transmembrane protein 87A isoform 1 [Mus muscul... 784 0.0
Alignment gi|NP_001103966.1| transmembrane protein 87A isoform 2 [Mus mus... 747 0.0
Alignment gi|NP_001103967.1| transmembrane protein 87A isoform 3 [Mus mus... 747 0.0
Alignment gi|NP_082524.2| transmembrane protein 87B precursor [Mus muscul... 364 e-100
Alignment gi|NP_848875.2| protein GPR107 precursor [Mus musculus]. 50 6e-06
>ref|NP_776095.2| transmembrane protein 87A isoform 1 [Mus musculus].
Length = 560
Score = 784 bits (2024), Expect = 0.0
Identities = 395/477 (82%), Positives = 415/477 (87%)
Frame = +2
Query: 41 MAVKMASAAWXXXXXXXXXXXXGAPTSPLSHFGVGPASVAAADRSKWRIPISLGKNYFSF 220
MAVKMA AAW GA PLS G GPA V AADRSKW IP+ GK YF+F
Sbjct: 1 MAVKMAVAAWLQVSPVIFLLL-GAQPFPLSFLGAGPAPVFAADRSKWHIPMPSGKGYFNF 59
Query: 221 GKILFKNTTIFLKFDGEPCDVSLNITWYLKSADCYNEIYNFKTEEVETYLENLKEKKGLS 400
GKILF+NTTI LKFDGEPCD SLNITW+LKSADCYNEIYNFK +E+E+YLENLK KKGLS
Sbjct: 60 GKILFRNTTILLKFDGEPCDQSLNITWFLKSADCYNEIYNFKADEIESYLENLKGKKGLS 119
Query: 401 GKYQTSSKLFQNCSELFKAQSFSGEFIHRLPLLGEKQESKENGTNLTVTGDKTVMHDPLK 580
G+YQTSS+LFQNCSEL+KAQSFSG+F HRLPLLGEKQE+KEN TN+T TGDK MH+PL+
Sbjct: 120 GRYQTSSRLFQNCSELYKAQSFSGDFTHRLPLLGEKQEAKENATNVTFTGDKIAMHEPLQ 179
Query: 581 TWQDAPYIFIVHVGIXXXXXXXXXXXXXXLFTMTVEVKGPYEYLTLEDYPLMIFFMVMCI 760
TWQDAPYIFIVHVGI LFTMTVEVKGPYEYLTLEDYPLMIFFMVMCI
Sbjct: 180 TWQDAPYIFIVHVGISSSKESPKENALSNLFTMTVEVKGPYEYLTLEDYPLMIFFMVMCI 239
Query: 761 VYVLFGVLWLAWSACYWRDLLRIQFWIGAVIFLGMLEKAVFYAEFQNIRYKGESVQGALI 940
VYVLFGVLWLAWSACYWRDLLRIQFWIGAVIFLGM EKAVFYAEFQNIRYKGESVQ AL+
Sbjct: 240 VYVLFGVLWLAWSACYWRDLLRIQFWIGAVIFLGMFEKAVFYAEFQNIRYKGESVQNALV 299
Query: 941 LAELLSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTGH 1120
LAELLSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTG+
Sbjct: 300 LAELLSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTGY 359
Query: 1121 FSYPLALIVNLALSAINACIILWIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAA 1300
FSY LALIV+LALSAI+ACIILWIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAA
Sbjct: 360 FSYSLALIVSLALSAIDACIILWIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAA 419
Query: 1301 SIVFIIWTTMKFXIVTCQSDWRELWVDDAIWAXAISMIPLVIMXLWRTSAKHQSFAF 1471
SIVFIIWTTMKF IVTCQSDWRELWVDDAIW SMI VIM LWR SA +Q FAF
Sbjct: 420 SIVFIIWTTMKFRIVTCQSDWRELWVDDAIWRLLFSMILFVIMILWRPSANNQRFAF 476
>ref|NP_001103966.1| transmembrane protein 87A isoform 2 [Mus musculus].
Length = 559
Score = 747 bits (1929), Expect = 0.0
Identities = 379/477 (79%), Positives = 402/477 (84%)
Frame = +2
Query: 41 MAVKMASAAWXXXXXXXXXXXXGAPTSPLSHFGVGPASVAAADRSKWRIPISLGKNYFSF 220
MAVKMA AAW GA PLS G GPA V AADRSKW IP+ GK YF+F
Sbjct: 1 MAVKMAVAAWLQVSPVIFLLL-GAQPFPLSFLGAGPAPVFAADRSKWHIPMPSGKGYFNF 59
Query: 221 GKILFKNTTIFLKFDGEPCDVSLNITWYLKSADCYNEIYNFKTEEVETYLENLKEKKGLS 400
GKILF+NTTI LKFDGEPCD SLNITW+LKSADCYNEIYNFK +E+E+YLENLK KKGLS
Sbjct: 60 GKILFRNTTILLKFDGEPCDQSLNITWFLKSADCYNEIYNFKADEIESYLENLKGKKGLS 119
Query: 401 GKYQTSSKLFQNCSELFKAQSFSGEFIHRLPLLGEKQESKENGTNLTVTGDKTVMHDPLK 580
G+YQTSS+LFQNCSEL+KAQSFSG+F HRLPLLGEKQE+KEN TN+T TGDK MH+PL+
Sbjct: 120 GRYQTSSRLFQNCSELYKAQSFSGDFTHRLPLLGEKQEAKENATNVTFTGDKIAMHEPLQ 179
Query: 581 TWQDAPYIFIVHVGIXXXXXXXXXXXXXXLFTMTVEVKGPYEYLTLEDYPLMIFFMVMCI 760
TWQDAPYIFIVHVGI LFTMTVEVKGPYEYLTLEDYPLMIFFMVMCI
Sbjct: 180 TWQDAPYIFIVHVGISSSKESPKENALSNLFTMTVEVKGPYEYLTLEDYPLMIFFMVMCI 239
Query: 761 VYVLFGVLWLAWSACYWRDLLRIQFWIGAVIFLGMLEKAVFYAEFQNIRYKGESVQGALI 940
VYVLFGVLWLAWSACYWRDLLRIQFWIGAVIFLGM EKAVFYAEFQNIRYKGESVQ AL+
Sbjct: 240 VYVLFGVLWLAWSACYWRDLLRIQFWIGAVIFLGMFEKAVFYAEFQNIRYKGESVQNALV 299
Query: 941 LAELLSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTGH 1120
LAELLSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTG
Sbjct: 300 LAELLSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTG- 358
Query: 1121 FSYPLALIVNLALSAINACIILWIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAA 1300
LA + + L+ ++ + WIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAA
Sbjct: 359 AQTDLASLAFIPLAFLDTALCWWIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAA 418
Query: 1301 SIVFIIWTTMKFXIVTCQSDWRELWVDDAIWAXAISMIPLVIMXLWRTSAKHQSFAF 1471
SIVFIIWTTMKF IVTCQSDWRELWVDDAIW SMI VIM LWR SA +Q FAF
Sbjct: 419 SIVFIIWTTMKFRIVTCQSDWRELWVDDAIWRLLFSMILFVIMILWRPSANNQRFAF 475
>ref|NP_001103967.1| transmembrane protein 87A isoform 3 [Mus musculus].
Length = 558
Score = 747 bits (1929), Expect = 0.0
Identities = 379/477 (79%), Positives = 402/477 (84%)
Frame = +2
Query: 41 MAVKMASAAWXXXXXXXXXXXXGAPTSPLSHFGVGPASVAAADRSKWRIPISLGKNYFSF 220
MAVKMA AAW GA PLS G GPA V AADRSKW IP+ GK YF+F
Sbjct: 1 MAVKMAVAAWLQVSPVIFLLL-GAQPFPLSFLGAGPAPVFAADRSKWHIPMPSGKGYFNF 59
Query: 221 GKILFKNTTIFLKFDGEPCDVSLNITWYLKSADCYNEIYNFKTEEVETYLENLKEKKGLS 400
GKILF+NTTI LKFDGEPCD SLNITW+LKSADCYNEIYNFK +E+E+YLENLK KKGLS
Sbjct: 60 GKILFRNTTILLKFDGEPCDQSLNITWFLKSADCYNEIYNFKADEIESYLENLKGKKGLS 119
Query: 401 GKYQTSSKLFQNCSELFKAQSFSGEFIHRLPLLGEKQESKENGTNLTVTGDKTVMHDPLK 580
G+YQTSS+LFQNCSEL+KAQSFSG+F HRLPLLGEKQE+KEN TN+T TGDK MH+PL+
Sbjct: 120 GRYQTSSRLFQNCSELYKAQSFSGDFTHRLPLLGEKQEAKENATNVTFTGDKIAMHEPLQ 179
Query: 581 TWQDAPYIFIVHVGIXXXXXXXXXXXXXXLFTMTVEVKGPYEYLTLEDYPLMIFFMVMCI 760
TWQDAPYIFIVHVGI LFTMTVEVKGPYEYLTLEDYPLMIFFMVMCI
Sbjct: 180 TWQDAPYIFIVHVGISSSKESPKENALSNLFTMTVEVKGPYEYLTLEDYPLMIFFMVMCI 239
Query: 761 VYVLFGVLWLAWSACYWRDLLRIQFWIGAVIFLGMLEKAVFYAEFQNIRYKGESVQGALI 940
VYVLFGVLWLAWSACYWRDLLRIQFWIGAVIFLGM EKAVFYAEFQNIRYKGESVQ AL+
Sbjct: 240 VYVLFGVLWLAWSACYWRDLLRIQFWIGAVIFLGMFEKAVFYAEFQNIRYKGESVQNALV 299
Query: 941 LAELLSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTGH 1120
LAELLSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTG
Sbjct: 300 LAELLSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTG- 358
Query: 1121 FSYPLALIVNLALSAINACIILWIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAA 1300
LA + + L+ ++ + WIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAA
Sbjct: 359 AQTDLASLAFIPLAFLDTALCWWIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAA 418
Query: 1301 SIVFIIWTTMKFXIVTCQSDWRELWVDDAIWAXAISMIPLVIMXLWRTSAKHQSFAF 1471
SIVFIIWTTMKF IVTCQSDWRELWVDDAIW SMI VIM LWR SA +Q FAF
Sbjct: 419 SIVFIIWTTMKFRIVTCQSDWRELWVDDAIWRLLFSMILFVIMILWRPSANNQRFAF 475
>ref|NP_082524.2| transmembrane protein 87B precursor [Mus musculus].
Length = 555
Score = 364 bits (934), Expect = e-100
Identities = 205/452 (45%), Positives = 272/452 (60%), Gaps = 10/452 (2%)
Frame = +2
Query: 146 PASV-AAADRSKWRIPISLGKNYFSFGKILFKNTTIFLKFDGEPCD--VSLNITWYLKSA 316
PA+V A + W ++ F K +F +T I C V I W+LK
Sbjct: 37 PAAVDAVPELGLWTRTVNDKSGPLVFRKTMFNSTEIKFSVKSFSCSGPVKFTIEWHLKYH 96
Query: 317 DCYNEIYNFKTEEVETYLENLKEKKGLSGK-----YQTSSKLFQNCSELFKAQSFSGEF- 478
C+N+ + + E L ++ L Y + + SE S S F
Sbjct: 97 TCHNDYPDLE--------EELSQRHELHADPDVCAYFKNIDCWTTKSENLDCSSDSQAFP 148
Query: 479 -IHRLPLLGEKQESKENGTNLTVTGDKTVMHDPLKTWQDAPYIFIVHVGIXXXXXXXXXX 655
++ L G + S + G+ V +T +D +IFIV +
Sbjct: 149 SLNNKELTGIRNISSQEGSTDVVA----------RTQKDGFHIFIVSIKTEKTDAVWD-- 196
Query: 656 XXXXLFTMTVEVKGPYEYLTLEDYPLMIFFMVMCIVYVLFGVLWLAWSACYWRDLLRIQF 835
+++ + GP+ Y++ D+PLMIF+MVMCIVY+L+GVLWL WSACYW+D+LRIQF
Sbjct: 197 -----LNVSLSMVGPHGYISASDWPLMIFYMVMCIVYILYGVLWLLWSACYWKDILRIQF 251
Query: 836 WIGAVIFLGMLEKAVFYAEFQNIRYKGESVQGALILAELLSAVKRSLARTLVIIVSLGYG 1015
WI AVIFLGMLEKAVFY+E+QNI G S QG LI AEL+SAVKR+LAR LVIIVSLGYG
Sbjct: 252 WIAAVIFLGMLEKAVFYSEYQNINSTGLSTQGLLIFAELISAVKRTLARLLVIIVSLGYG 311
Query: 1016 IVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTGHFSYPLALIVNLALSAINACIILWIF 1195
IVKPRLG +H+V+ G LYL+F+ +EGV+RV G + ++ ++ L+ I++ + +IF
Sbjct: 312 IVKPRLGTVMHRVIGLGLLYLIFAAIEGVMRVIGGSKHLAVVLTDIVLAVIDSIFVWFIF 371
Query: 1196 ISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAASIVFIIWTTMKFXIVTCQSDWRELW 1375
ISL QTMK L+LR+N VK SLYRHFTNTLI AV ASIVF++WTT F I CQSDW ELW
Sbjct: 372 ISLAQTMKTLRLRKNTVKFSLYRHFTNTLIFAVLASIVFMVWTTKTFRIAKCQSDWMELW 431
Query: 1376 VDDAIWAXAISMIPLVIMXLWRTSAKHQSFAF 1471
VDDA W+ S+I +VIM LWR SA +Q +AF
Sbjct: 432 VDDAFWSFLFSVILIVIMFLWRPSANNQRYAF 463
>ref|NP_848875.2| protein GPR107 precursor [Mus musculus].
Length = 551
Score = 49.7 bits (117), Expect = 6e-06
Identities = 42/207 (20%), Positives = 85/207 (41%), Gaps = 9/207 (4%)
Frame = +2
Query: 677 MTVEVKGPYEYLTLEDYPLMIFFMVMCIVYVLFGVLWLAWSACYWRDLLRIQFWIGAVIF 856
+ + K P YL+ + PL ++ M + + L G +W+ D+ +I + + A+ F
Sbjct: 243 IAITEKNPNSYLSAGEIPLPKLYVSMALFFFLSGTIWIHILRKRRNDVFKIHWLMAALPF 302
Query: 857 LGMLEKAVFYAEFQNIRYKGESVQGALILAELLSAVKRSLARTLVIIVSLGYGIVKPRLG 1036
L ++ I +G ++G ++ + +K +L + ++ G+ +K L
Sbjct: 303 TKSLSLVFHAIDYHYISSQGFPIEGWAVVYYITHLLKGALLFITIALIGTGWAFIKHILS 362
Query: 1037 --------VTLHKVVVAGALYLLFSGMEGVLRVTGHFSYPLALIVNLALSAINACIILWI 1192
+ + V+A Y++ E G + L L+ L AI ++W
Sbjct: 363 DKDKKIFMIVIPLQVLANVAYIIIESTEEGTTEYGLWKDSLFLVDLLCCGAI-LFPVVWS 421
Query: 1193 FISLTQTMKL-LKLRRNIVKLSLYRHF 1270
L + K N+ KL L+RH+
Sbjct: 422 IRHLQEASATDGKAAINLAKLRLFRHY 448
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,021,596
Number of extensions: 1152162
Number of successful extensions: 3350
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3342
Number of HSP's successfully gapped: 5
Length of query: 490
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 385
Effective length of database: 12,463,779
Effective search space: 4798554915
Effective search space used: 4798554915
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007656
(1471 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001929255.2| PREDICTED: transmembrane protein 87A [Sus sc... 823 0.0
Alignment gi|XP_003124859.2| PREDICTED: transmembrane protein 87B [Sus sc... 366 e-101
>ref|XP_001929255.2| PREDICTED: transmembrane protein 87A [Sus scrofa].
Length = 560
Score = 823 bits (2126), Expect = 0.0
Identities = 419/477 (87%), Positives = 426/477 (89%)
Frame = +2
Query: 41 MAVKMASAAWXXXXXXXXXXXXGAPTSPLSHFGVGPASVAAADRSKWRIPISLGKNYFSF 220
MAVKMASAAW GAPTSPLSHFGVGPASVAAADRSKWRIPISLGKNYFSF
Sbjct: 1 MAVKMASAAWLQVLPVILLLLLGAPTSPLSHFGVGPASVAAADRSKWRIPISLGKNYFSF 60
Query: 221 GKILFKNTTIFLKFDGEPCDVSLNITWYLKSADCYNEIYNFKTEEVETYLENLKEKKGLS 400
GKILFKNTTIFLKFDGEPCDVSLNITWYLKSADCYNEIYNFKTEEVETYLENLKEKKGLS
Sbjct: 61 GKILFKNTTIFLKFDGEPCDVSLNITWYLKSADCYNEIYNFKTEEVETYLENLKEKKGLS 120
Query: 401 GKYQTSSKLFQNCSELFKAQSFSGEFIHRLPLLGEKQESKENGTNLTVTGDKTVMHDPLK 580
GKYQTSSKLFQNCSELFKAQSFSGEFIHRLPLLGEKQESKENGTNLTVTGDKTVMHDPLK
Sbjct: 121 GKYQTSSKLFQNCSELFKAQSFSGEFIHRLPLLGEKQESKENGTNLTVTGDKTVMHDPLK 180
Query: 581 TWQDAPYIFIVHVGIXXXXXXXXXXXXXXLFTMTVEVKGPYEYLTLEDYPLMIFFMVMCI 760
TWQDAPYIFIVHVGI LFTMTVEVKGPYEYLTLEDYPLMIFFMVMCI
Sbjct: 181 TWQDAPYIFIVHVGISSSKESSKENSPSSLFTMTVEVKGPYEYLTLEDYPLMIFFMVMCI 240
Query: 761 VYVLFGVLWLAWSACYWRDLLRIQFWIGAVIFLGMLEKAVFYAEFQNIRYKGESVQGALI 940
VYVLFGVLWLAWSACYWRDLLRIQFWIGAVIFLGMLEKAVFYAEFQNIRYKGESVQGALI
Sbjct: 241 VYVLFGVLWLAWSACYWRDLLRIQFWIGAVIFLGMLEKAVFYAEFQNIRYKGESVQGALI 300
Query: 941 LAELLSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTGH 1120
LAELLSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTG
Sbjct: 301 LAELLSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTG- 359
Query: 1121 FSYPLALIVNLALSAINACIILWIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAA 1300
LA + + L+ ++ + WIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAA
Sbjct: 360 AQTDLASLAFIPLAFLDTALCWWIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAA 419
Query: 1301 SIVFIIWTTMKFXIVTCQSDWRELWVDDAIWAXAISMIPLVIMXLWRTSAKHQSFAF 1471
SIVFIIWTTMKF IVTCQSDWRELWVDDAIW SMI VIM LWR SA +Q FAF
Sbjct: 420 SIVFIIWTTMKFRIVTCQSDWRELWVDDAIWRLLFSMILFVIMVLWRPSANNQRFAF 476
>ref|XP_003124859.2| PREDICTED: transmembrane protein 87B [Sus scrofa].
Length = 529
Score = 366 bits (940), Expect = e-101
Identities = 201/446 (45%), Positives = 270/446 (60%), Gaps = 3/446 (0%)
Frame = +2
Query: 143 GPASVAAA-DRSKWRIPISLGKNYFSFGKILFKNTTIFLKFDGEPCD--VSLNITWYLKS 313
GPA+V A + W ++ F K +F +T I C V I W+L+
Sbjct: 29 GPAAVGAVPELGLWAATVNDKSGPLIFRKTMFNSTEIKFSVKSFSCSGPVKFTIEWHLEY 88
Query: 314 ADCYNEIYNFKTEEVETYLENLKEKKGLSGKYQTSSKLFQNCSELFKAQSFSGEFIHRLP 493
C+N+ + LE L K LS F+N E + ++ + L
Sbjct: 89 HTCHNQY---------SELEELSRKHKLSVDEDFCGHYFKN-RECWTTKTEKLDCNSDLQ 138
Query: 494 LLGEKQESKENGTNLTVTGDKTVMHDPLKTWQDAPYIFIVHVGIXXXXXXXXXXXXXXLF 673
L ++ V+ + M +T +D +IFIV +
Sbjct: 139 LFPSLHNKEQITNTRNVSNQEGSMDVVARTQRDGFHIFIVSIKTEKTDADWN-------L 191
Query: 674 TMTVEVKGPYEYLTLEDYPLMIFFMVMCIVYVLFGVLWLAWSACYWRDLLRIQFWIGAVI 853
+++ + GP+ Y++ D+PLMIF+MVMCIVY+L+GVLWL WSACYW+D+LRIQFWI AVI
Sbjct: 192 NVSLSMMGPHGYISASDWPLMIFYMVMCIVYILYGVLWLMWSACYWKDILRIQFWIAAVI 251
Query: 854 FLGMLEKAVFYAEFQNIRYKGESVQGALILAELLSAVKRSLARTLVIIVSLGYGIVKPRL 1033
FLGMLEKAVFYAE+QNI G S QG LI AEL+S+VKR+LAR LVIIVSLGYGIVKPRL
Sbjct: 252 FLGMLEKAVFYAEYQNINSTGLSTQGLLIFAELISSVKRTLARLLVIIVSLGYGIVKPRL 311
Query: 1034 GVTLHKVVVAGALYLLFSGMEGVLRVTGHFSYPLALIVNLALSAINACIILWIFISLTQT 1213
G +H+VV G LY +F+ +EGV+RV G ++ ++ ++ L+ I++ + +IFISL QT
Sbjct: 312 GTVMHRVVGLGLLYFIFAAIEGVMRVIGGSNHLAVVLGDIILAVIDSIFVWFIFISLAQT 371
Query: 1214 MKLLKLRRNIVKLSLYRHFTNTLILAVAASIVFIIWTTMKFXIVTCQSDWRELWVDDAIW 1393
MK L+LR+N VK SLYRHFTNTLI A+ AS+VF++WTT F I CQSDW E WVDDA W
Sbjct: 372 MKTLRLRKNTVKFSLYRHFTNTLIFAILASVVFMVWTTKTFRIAKCQSDWMERWVDDAFW 431
Query: 1394 AXAISMIPLVIMXLWRTSAKHQSFAF 1471
+ S+I +VIM LWR SA +Q +AF
Sbjct: 432 SFLFSLILIVIMFLWRPSANNQRYAF 457
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,461,699
Number of extensions: 835540
Number of successful extensions: 2328
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2322
Number of HSP's successfully gapped: 2
Length of query: 490
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 387
Effective length of database: 8,779,541
Effective search space: 3397682367
Effective search space used: 3397682367
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007656
(1471 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056312.2| transmembrane protein 87A isoform 1 [Homo sapie... 765 0.0
Alignment gi|NP_116213.1| transmembrane protein 87B precursor [Homo sapie... 358 7e-99
Alignment gi|NP_001103973.1| transmembrane protein 87A isoform 2 [Homo sa... 275 1e-73
Alignment gi|NP_066011.2| protein GPR107 isoform 3 [Homo sapiens]. 51 3e-06
Alignment gi|NP_001073921.1| protein GPR108 [Homo sapiens]. 49 9e-06
>ref|NP_056312.2| transmembrane protein 87A isoform 1 [Homo sapiens].
Length = 555
Score = 765 bits (1975), Expect = 0.0
Identities = 388/473 (82%), Positives = 407/473 (86%)
Frame = +2
Query: 53 MASAAWXXXXXXXXXXXXGAPTSPLSHFGVGPASVAAADRSKWRIPISLGKNYFSFGKIL 232
MA+AAW GA SPLS F GPA+VAAADRSKW IPI GKNYFSFGKIL
Sbjct: 1 MAAAAWLQVLPVILLLL-GAHPSPLSFFSAGPATVAAADRSKWHIPIPSGKNYFSFGKIL 59
Query: 233 FKNTTIFLKFDGEPCDVSLNITWYLKSADCYNEIYNFKTEEVETYLENLKEKKGLSGKYQ 412
F+NTTIFLKFDGEPCD+SLNITWYLKSADCYNEIYNFK EEVE YLE LKEK+GLSGKYQ
Sbjct: 60 FRNTTIFLKFDGEPCDLSLNITWYLKSADCYNEIYNFKAEEVELYLEKLKEKRGLSGKYQ 119
Query: 413 TSSKLFQNCSELFKAQSFSGEFIHRLPLLGEKQESKENGTNLTVTGDKTVMHDPLKTWQD 592
TSSKLFQNCSELFK Q+FSG+F+HRLPLLGEKQE+KENGTNLT GDKT MH+PL+TWQD
Sbjct: 120 TSSKLFQNCSELFKTQTFSGDFMHRLPLLGEKQEAKENGTNLTFIGDKTAMHEPLQTWQD 179
Query: 593 APYIFIVHVGIXXXXXXXXXXXXXXLFTMTVEVKGPYEYLTLEDYPLMIFFMVMCIVYVL 772
APYIFIVH+GI LFTMTVEVKGPYEYLTLEDYPLMIFFMVMCIVYVL
Sbjct: 180 APYIFIVHIGISSSKESSKENSLSNLFTMTVEVKGPYEYLTLEDYPLMIFFMVMCIVYVL 239
Query: 773 FGVLWLAWSACYWRDLLRIQFWIGAVIFLGMLEKAVFYAEFQNIRYKGESVQGALILAEL 952
FGVLWLAWSACYWRDLLRIQFWIGAVIFLGMLEKAVFYAEFQNIRYKGESVQGALILAEL
Sbjct: 240 FGVLWLAWSACYWRDLLRIQFWIGAVIFLGMLEKAVFYAEFQNIRYKGESVQGALILAEL 299
Query: 953 LSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTGHFSYP 1132
LSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTG
Sbjct: 300 LSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTG-AQTD 358
Query: 1133 LALIVNLALSAINACIILWIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAASIVF 1312
LA + + L+ ++ + WIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAASIVF
Sbjct: 359 LASLAFIPLAFLDTALCWWIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAASIVF 418
Query: 1313 IIWTTMKFXIVTCQSDWRELWVDDAIWAXAISMIPLVIMXLWRTSAKHQSFAF 1471
IIWTTMKF IVTCQSDWRELWVDDAIW SMI VIM LWR SA +Q FAF
Sbjct: 419 IIWTTMKFRIVTCQSDWRELWVDDAIWRLLFSMILFVIMVLWRPSANNQRFAF 471
>ref|NP_116213.1| transmembrane protein 87B precursor [Homo sapiens].
Length = 555
Score = 358 bits (919), Expect = 7e-99
Identities = 206/450 (45%), Positives = 270/450 (60%), Gaps = 8/450 (1%)
Frame = +2
Query: 146 PASVAAA-DRSKWRIPISLGKNYFSFGKILFKNTTIFLKFDGEPCD--VSLNITWYLKSA 316
PA+V A + W ++ F K +F +T I L C V I W+LK
Sbjct: 37 PAAVRAVPELGLWLETVNDKSGPLIFRKTMFNSTDIKLSVKSFHCSGPVKFTIVWHLKYH 96
Query: 317 DCYNEIYNFKTEEVETYLENLKEKKGLSGK-----YQTSSKLFQNCSELFKAQSFSGEFI 481
C+NE N LE L +K LS Y + + +E S S F
Sbjct: 97 TCHNEHSN---------LEELFQKHKLSVDEDFCHYLKNDNCWTTKNENLDCNSDSQVF- 146
Query: 482 HRLPLLGEKQESKENGTNLTVTGDKTVMHDPLKTWQDAPYIFIVHVGIXXXXXXXXXXXX 661
P L K+ V+ + M +T +D +IFIV +
Sbjct: 147 ---PSLNNKELINIRN----VSNQERSMDVVARTQKDGFHIFIVSIKTENTDASWN---- 195
Query: 662 XXLFTMTVEVKGPYEYLTLEDYPLMIFFMVMCIVYVLFGVLWLAWSACYWRDLLRIQFWI 841
+++ + GP+ Y++ D+PLMIF+MVMCIVY+L+G+LWL WSACYW+D+LRIQFWI
Sbjct: 196 ---LNVSLSMIGPHGYISASDWPLMIFYMVMCIVYILYGILWLTWSACYWKDILRIQFWI 252
Query: 842 GAVIFLGMLEKAVFYAEFQNIRYKGESVQGALILAELLSAVKRSLARTLVIIVSLGYGIV 1021
AVIFLGMLEKAVFY+E+QNI G S QG LI AEL+SA+KR+LAR LVIIVSLGYGIV
Sbjct: 253 AAVIFLGMLEKAVFYSEYQNISNTGLSTQGLLIFAELISAIKRTLARLLVIIVSLGYGIV 312
Query: 1022 KPRLGVTLHKVVVAGALYLLFSGMEGVLRVTGHFSYPLALIVNLALSAINACIILWIFIS 1201
KPRLG +H+V+ G LYL+F+ +EGV+RV G ++ ++ ++ L+ I++ + +IFIS
Sbjct: 313 KPRLGTVMHRVIGLGLLYLIFAAVEGVMRVIGGSNHLAVVLDDIILAVIDSIFVWFIFIS 372
Query: 1202 LTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAASIVFIIWTTMKFXIVTCQSDWRELWVD 1381
L QTMK L+LR+N VK SLYRHF NTLI AV ASIVF+ WTT F I CQSDW E WVD
Sbjct: 373 LAQTMKTLRLRKNTVKFSLYRHFKNTLIFAVLASIVFMGWTTKTFRIAKCQSDWMERWVD 432
Query: 1382 DAIWAXAISMIPLVIMXLWRTSAKHQSFAF 1471
DA W+ S+I +VIM LWR SA +Q +AF
Sbjct: 433 DAFWSFLFSLILIVIMFLWRPSANNQRYAF 462
>ref|NP_001103973.1| transmembrane protein 87A isoform 2 [Homo sapiens].
Length = 181
Score = 275 bits (702), Expect = 1e-73
Identities = 136/176 (77%), Positives = 146/176 (82%)
Frame = +2
Query: 53 MASAAWXXXXXXXXXXXXGAPTSPLSHFGVGPASVAAADRSKWRIPISLGKNYFSFGKIL 232
MA+AAW GA SPLS F GPA+VAAADRSKW IPI GKNYFSFGKIL
Sbjct: 1 MAAAAWLQVLPVILLLL-GAHPSPLSFFSAGPATVAAADRSKWHIPIPSGKNYFSFGKIL 59
Query: 233 FKNTTIFLKFDGEPCDVSLNITWYLKSADCYNEIYNFKTEEVETYLENLKEKKGLSGKYQ 412
F+NTTIFLKFDGEPCD+SLNITWYLKSADCYNEIYNFK EEVE YLE LKEK+GLSGKYQ
Sbjct: 60 FRNTTIFLKFDGEPCDLSLNITWYLKSADCYNEIYNFKAEEVELYLEKLKEKRGLSGKYQ 119
Query: 413 TSSKLFQNCSELFKAQSFSGEFIHRLPLLGEKQESKENGTNLTVTGDKTVMHDPLK 580
TSSKLFQNCSELFK Q+FSG+F+HRLPLLGEKQE+KENGTNLT GDKT+ LK
Sbjct: 120 TSSKLFQNCSELFKTQTFSGDFMHRLPLLGEKQEAKENGTNLTFIGDKTIQMPFLK 175
>ref|NP_066011.2| protein GPR107 isoform 3 [Homo sapiens].
Length = 552
Score = 50.8 bits (120), Expect = 3e-06
Identities = 44/211 (20%), Positives = 88/211 (41%), Gaps = 11/211 (5%)
Frame = +2
Query: 671 FTMTVEV--KGPYEYLTLEDYPLMIFFMVMCIVYVLFGVLWLAWSACYWRDLLRIQFWIG 844
F++ +E+ K P YL+ + PL ++ M + L G +W+ D+ +I + +
Sbjct: 240 FSLDIEITEKNPDSYLSAGEIPLPKLYISMAFFFFLSGTIWIHILRKRRNDVFKIHWLMA 299
Query: 845 AVIFLGMLEKAVFYAEFQNIRYKGESVQGALILAELLSAVKRSLARTLVIIVSLGYGIVK 1024
A+ F L ++ I +G ++G ++ + +K +L + ++ G+ +K
Sbjct: 300 ALPFTKSLSLVFHAIDYHYISSQGFPIEGWAVVYYITHLLKGALLFITIALIGTGWAFIK 359
Query: 1025 PRLG--------VTLHKVVVAGALYLLFSGMEGVLRVTGHFSYPLALIVNLALSAINACI 1180
L + + V+A Y++ E G + L L+ L AI
Sbjct: 360 HILSDKDKKIFMIVIPLQVLANVAYIIIESTEEGTTEYGLWKDSLFLVDLLCCGAI-LFP 418
Query: 1181 ILWIFISLTQTMKL-LKLRRNIVKLSLYRHF 1270
++W L + K N+ KL L+RH+
Sbjct: 419 VVWSIRHLQEASATDGKAAINLAKLKLFRHY 449
>ref|NP_001073921.1| protein GPR108 [Homo sapiens].
Length = 543
Score = 49.3 bits (116), Expect = 9e-06
Identities = 41/212 (19%), Positives = 85/212 (40%), Gaps = 13/212 (6%)
Frame = +2
Query: 674 TMTVEVKGPYEYLTLEDYPLMIFFMVMCIVYVLFGVLWLAWSACYWRDLLRIQFWIGAVI 853
T+ + K P +L+ + PL +MVM ++ G+ W++ + +I + + A+
Sbjct: 241 TVMIREKNPDGFLSAAEMPLFKLYMVMSACFLAAGIFWVSILCRNTYSVFKIHWLMAALA 300
Query: 854 FLGMLEKAVFYAEFQNIRYKGESVQGALILAELLSAVKRSLARTLVIIVSLGYGIVKPRL 1033
F + + I +G ++G ++ + +K +L + ++ G+ +K L
Sbjct: 301 FTKSISLLFHSINYYFINSQGHPIEGLAVMYYIAHLLKGALLFITIALIGSGWAFIKYVL 360
Query: 1034 --------GVTLHKVVVAGALYLLFSGMEGVLRVTGHFSYPL----ALIVNLALSAINAC 1177
G+ + V+A Y++ E G Y L +V+L
Sbjct: 361 SDKEKKVFGIVIPMQVLANVAYIIIESRE-----EGASDYVLWKEILFLVDLICCGAILF 415
Query: 1178 IILWIFISLTQTMKL-LKLRRNIVKLSLYRHF 1270
++W L K+ N+ KL L+RH+
Sbjct: 416 PVVWSIRHLQDASGTDGKVAVNLAKLKLFRHY 447
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 53,751,259
Number of extensions: 1353260
Number of successful extensions: 3868
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3857
Number of HSP's successfully gapped: 5
Length of query: 490
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 383
Effective length of database: 14,770,016
Effective search space: 5656916128
Effective search space used: 5656916128
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007656
(1471 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 396 e-107
>Sscrofa_Chr01
|| Length = 315321322
Score = 396 bits (200), Expect = e-107
Identities = 200/200 (100%)
Strand = Plus / Plus
Query: 1 acgaaccggaagaaggtgaaatactttgggtaggcactccatggctgtgaagatggcgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143990834 acgaaccggaagaaggtgaaatactttgggtaggcactccatggctgtgaagatggcgtc 143990893
Query: 61 ggctgcgtggcttcaggtgttgcctgtcattcttcttcttcttctgggggctcccacgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143990894 ggctgcgtggcttcaggtgttgcctgtcattcttcttcttcttctgggggctcccacgtc 143990953
Query: 121 cccactgtcacatttcggtgtaggaccggcatccgtggcagctgccgaccgatccaagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143990954 cccactgtcacatttcggtgtaggaccggcatccgtggcagctgccgaccgatccaagtg 143991013
Query: 181 gcgcataccgatatcgttgg 200
||||||||||||||||||||
Sbjct: 143991014 gcgcataccgatatcgttgg 143991033
Score = 353 bits (178), Expect = 2e-94
Identities = 178/178 (100%)
Strand = Plus / Plus
Query: 746 atggtgatgtgtattgtatatgtcctgtttggtgtactgtggctggcatggtctgcttgc 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144012472 atggtgatgtgtattgtatatgtcctgtttggtgtactgtggctggcatggtctgcttgc 144012531
Query: 806 tactggagagatctcctgagaattcagttttggatcggtgctgtcatcttcttgggaatg 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144012532 tactggagagatctcctgagaattcagttttggatcggtgctgtcatcttcttgggaatg 144012591
Query: 866 cttgagaaagctgtcttctatgcagaatttcagaatatccgatacaaaggagaatctg 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144012592 cttgagaaagctgtcttctatgcagaatttcagaatatccgatacaaaggagaatctg 144012649
Score = 234 bits (118), Expect = 1e-58
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 560 gtaatgcatgatccattgaaaacttggcaagatgcaccatacatttttattgtacatgtt 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144006899 gtaatgcatgatccattgaaaacttggcaagatgcaccatacatttttattgtacatgtt 144006958
Query: 620 ggcatttcatcctctaaggaatcatcaaaagaaaattccccaagtagtctttttacca 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144006959 ggcatttcatcctctaaggaatcatcaaaagaaaattccccaagtagtctttttacca 144007016
Score = 216 bits (109), Expect = 3e-53
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 1190 atatttattagtctgactcaaacaatgaagctattaaaacttcggaggaacattgtaaaa 1249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144020629 atatttattagtctgactcaaacaatgaagctattaaaacttcggaggaacattgtaaaa 144020688
Query: 1250 ctctctttataccgacatttcaccaacacgcttatcttggcggtggcag 1298
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144020689 ctctctttataccgacatttcaccaacacgcttatcttggcggtggcag 144020737
Score = 202 bits (102), Expect = 4e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 923 gtccaaggtgccctgatccttgcagagctgctttcggctgttaaacgctcactggctcga 982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144013893 gtccaaggtgccctgatccttgcagagctgctttcggctgttaaacgctcactggctcga 144013952
Query: 983 accttggtcatcatagtcagtctgggatatggcattgtcaag 1024
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144013953 accttggtcatcatagtcagtctgggatatggcattgtcaag 144013994
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 1024 gcctcgccttggtgttaccctccacaaggttgtggtagcaggagccctttatcttttgtt 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144016919 gcctcgccttggtgttaccctccacaaggttgtggtagcaggagccctttatcttttgtt 144016978
Query: 1084 ctccggcatggaaggggtcctcagagttactggg 1117
||||||||||||||||||||||||||||||||||
Sbjct: 144016979 ctccggcatggaaggggtcctcagagttactggg 144017012
Score = 182 bits (92), Expect = 4e-43
Identities = 108/116 (93%)
Strand = Plus / Plus
Query: 345 agacagaagaagtggagacatacttagaaaatcttaaggnnnnnnnnggcttgtctggga 404
||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 143998938 agacagaagaagtggagacatacttagaaaatcttaaggaaaaaaaaggcttgtctggga 143998997
Query: 405 aatatcaaacatcatcaaaattgttccagaactgcagtgaactctttaaagcacag 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143998998 aatatcaaacatcatcaaaattgttccagaactgcagtgaactctttaaagcacag 143999053
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 261 ttgatggagaaccttgtgacgtatctttgaatataacctggtatctgaaaagtgctgact 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143995379 ttgatggagaaccttgtgacgtatctttgaatataacctggtatctgaaaagtgctgact 143995438
Query: 321 gttataatgagatatacaacttcaag 346
||||||||||||||||||||||||||
Sbjct: 143995439 gttataatgagatatacaacttcaag 143995464
Score = 145 bits (73), Expect = 8e-32
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 1117 gcatttttcttatcccttggctttgatagtaaacctggccctctcagcaattaatgcctg 1176
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 144017788 gcatttttcttatcccttggctttgatagtaaacctggccctctcagcaattgatgcctg 144017847
Query: 1177 tattattttatggatat 1193
|||||||||||||||||
Sbjct: 144017848 tattattttatggatat 144017864
Score = 123 bits (62), Expect = 3e-25
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 199 ggggaaaaattattttagttttggaaagatcctcttcaaaaatactactatcttcctgaa 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143992298 ggggaaaaattattttagttttggaaagatcctcttcaaaaatactactatcttcctgaa 143992357
Query: 259 at 260
||
Sbjct: 143992358 at 143992359
Score = 119 bits (60), Expect = 5e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 678 tgactgttgaagtgaaaggtccctatgaatacctcacacttgaagactatcctctgatga 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144011615 tgactgttgaagtgaaaggtccctatgaatacctcacacttgaagactatcctctgatga 144011674
Score = 119 bits (60), Expect = 5e-24
Identities = 96/106 (90%), Gaps = 2/106 (1%)
Strand = Plus / Plus
Query: 1357 ggattggcgggagctgtgggtagacgatgccatctgggcggntgcta-tctctatgatcc 1415
||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct: 144022676 ggattggcgggagctgtgggtagacgatgccatct-ggcggttgctattctctatgatcc 144022734
Query: 1416 ctcttgtcatcatggntctgtggcgaacatctgcaaaacaccagag 1461
|||||||||||| |||||||||| |||||||||| |||||||
Sbjct: 144022735 tctttgtcatcatggttctgtggcgaccatctgcaaacaaccagag 144022780
Score = 117 bits (59), Expect = 2e-23
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 1297 agcatctatcgtgtttatcatctggaccaccatgaagttcangatagtgacttgtcagtc 1356
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 144021879 agcatctatcgtgtttatcatctggaccaccatgaagttcaggatagtgacttgtcagtc 144021938
Query: 1357 gg 1358
||
Sbjct: 144021939 gg 144021940
Score = 111 bits (56), Expect = 1e-21
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 459 agagcttttctggggaattcatacatcgattgcctctcttaggagaaaaacaggag 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144001829 agagcttttctggggaattcatacatcgattgcctctcttaggagaaaaacaggag 144001884
Score = 101 bits (51), Expect = 1e-18
Identities = 51/51 (100%)
Strand = Plus / Plus
Query: 513 agtctaaggagaatggaacaaatcttaccgttactggagacaaaactgtaa 563
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144001981 agtctaaggagaatggaacaaatcttaccgttactggagacaaaactgtaa 144002031
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 46,839,064
Number of extensions: 489
Number of successful extensions: 489
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 488
Number of HSP's successfully gapped: 16
Length of query: 1471
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1450
Effective length of database: 2,808,413,156
Effective search space: 4072199076200
Effective search space used: 4072199076200
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)