Animal-Genome cDNA 20110601C-007656


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007656
         (1471 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001076984.1| transmembrane protein 87A [Bos taurus].           774   0.0  
Alignment   gi|XP_002691201.1| PREDICTED: transmembrane protein 87B [Bos ta...   372   e-103
Alignment   gi|XP_875413.3| PREDICTED: transmembrane protein 87B [Bos tauru...   366   e-101
Alignment   gi|NP_001092634.1| protein GPR107 [Bos taurus].                       51   2e-06
Alignment   gi|NP_001068801.1| protein GPR108 precursor [Bos taurus].             50   4e-06

>ref|NP_001076984.1| transmembrane protein 87A [Bos taurus].
          Length = 555

 Score =  774 bits (1999), Expect = 0.0
 Identities = 395/473 (83%), Positives = 410/473 (86%)
 Frame = +2

Query: 53   MASAAWXXXXXXXXXXXXGAPTSPLSHFGVGPASVAAADRSKWRIPISLGKNYFSFGKIL 232
            MA AAW            GA TSPLS F VGPA VAAA+RSKW IPI   KNYFSFGKIL
Sbjct: 1    MAVAAWLQVVPVILLLL-GARTSPLSLFSVGPAPVAAAERSKWHIPIPSAKNYFSFGKIL 59

Query: 233  FKNTTIFLKFDGEPCDVSLNITWYLKSADCYNEIYNFKTEEVETYLENLKEKKGLSGKYQ 412
            FKNTTIFLKFDGEPCD SLNITWYLKSADCYNEIYNFK EEV+TYLENLKEKKGLSGKY+
Sbjct: 60   FKNTTIFLKFDGEPCDASLNITWYLKSADCYNEIYNFKLEEVDTYLENLKEKKGLSGKYE 119

Query: 413  TSSKLFQNCSELFKAQSFSGEFIHRLPLLGEKQESKENGTNLTVTGDKTVMHDPLKTWQD 592
            TSSKLFQNCSELFKAQSFSG+F+HRLPLLGE+QE+KENGTNLT TGDKTVMHDPLKTWQD
Sbjct: 120  TSSKLFQNCSELFKAQSFSGDFVHRLPLLGERQEAKENGTNLTFTGDKTVMHDPLKTWQD 179

Query: 593  APYIFIVHVGIXXXXXXXXXXXXXXLFTMTVEVKGPYEYLTLEDYPLMIFFMVMCIVYVL 772
            APYIFIVHVGI              LFTMTVEVKGPYEYLTLE+YPLMIFFMVMCIVYVL
Sbjct: 180  APYIFIVHVGISSSKESSKENSRSTLFTMTVEVKGPYEYLTLEEYPLMIFFMVMCIVYVL 239

Query: 773  FGVLWLAWSACYWRDLLRIQFWIGAVIFLGMLEKAVFYAEFQNIRYKGESVQGALILAEL 952
            FGVLWLAWSACYWRDLLRIQFWIGAVIFLGMLEKAVFYAEFQNIRYKGESVQGALILAEL
Sbjct: 240  FGVLWLAWSACYWRDLLRIQFWIGAVIFLGMLEKAVFYAEFQNIRYKGESVQGALILAEL 299

Query: 953  LSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTGHFSYP 1132
            LSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTG     
Sbjct: 300  LSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTG-AQTD 358

Query: 1133 LALIVNLALSAINACIILWIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAASIVF 1312
            LA +  + L+ ++  +  WIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAASIVF
Sbjct: 359  LASLAFIPLAFLDTALCWWIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAASIVF 418

Query: 1313 IIWTTMKFXIVTCQSDWRELWVDDAIWAXAISMIPLVIMXLWRTSAKHQSFAF 1471
            IIWTTMKF IVTCQSDWRELWVDDAIW    SMI  VIM LWR SA +Q FAF
Sbjct: 419  IIWTTMKFRIVTCQSDWRELWVDDAIWRLLFSMILFVIMVLWRPSANNQRFAF 471


>ref|XP_002691201.1| PREDICTED: transmembrane protein 87B [Bos taurus].
          Length = 595

 Score =  372 bits (954), Expect = e-103
 Identities = 208/449 (46%), Positives = 271/449 (60%), Gaps = 6/449 (1%)
 Frame = +2

Query: 143  GPASVAAADR-SKWRIPISLGKNYFSFGKILFKNTTIFLKFDGEPCD--VSLNITWYLKS 313
            GPA+V A      W   IS       F K +F +T I        C   V   I W+L+ 
Sbjct: 74   GPAAVGAVPEIGLWTATISDKSGPLIFRKTMFNSTEIKFSVKSFSCPRTVKFTIEWHLEH 133

Query: 314  ADCYNEIYNFKTEEVETYLENLKEKKGLSGKYQTSSKLFQNCSELFKAQSFS---GEFIH 484
              C+N+          + LE L +K  L          F+N SE +  ++ +   G  + 
Sbjct: 134  HTCHNDY---------SELEELSQKHELPVTEDFCGHYFKN-SECWTTKNENVECGGDLQ 183

Query: 485  RLPLLGEKQESKENGTNLTVTGDKTVMHDPLKTWQDAPYIFIVHVGIXXXXXXXXXXXXX 664
              P L  KQ     G      G   V+    KT +D  +IFIV V               
Sbjct: 184  LFPPLNNKQLISNTGNVSNQEGSTDVV---AKTQRDGFHIFIVSVKTEKTDASWN----- 235

Query: 665  XLFTMTVEVKGPYEYLTLEDYPLMIFFMVMCIVYVLFGVLWLAWSACYWRDLLRIQFWIG 844
                +++ + GPY Y++  D+PLMIF+MVMCIVY+L+GVLWL WSACYW+D+LRIQFWI 
Sbjct: 236  --LNVSLSMLGPYGYISASDWPLMIFYMVMCIVYILYGVLWLMWSACYWKDILRIQFWIA 293

Query: 845  AVIFLGMLEKAVFYAEFQNIRYKGESVQGALILAELLSAVKRSLARTLVIIVSLGYGIVK 1024
            AVIFLGMLEKAVFYAE+QNI   G S QG LI AEL+SA+KR+LAR LVIIVSLGYGIVK
Sbjct: 294  AVIFLGMLEKAVFYAEYQNINSTGLSTQGLLIFAELISAIKRTLARLLVIIVSLGYGIVK 353

Query: 1025 PRLGVTLHKVVVAGALYLLFSGMEGVLRVTGHFSYPLALIVNLALSAINACIILWIFISL 1204
            PRLG  +H+V+  G LY +F+ +EGV+RV G  ++   ++ ++ L+ I++  + +IFISL
Sbjct: 354  PRLGTVMHRVIGLGVLYFIFAAVEGVMRVIGGSNHLAVVLGDIILALIDSIFVWFIFISL 413

Query: 1205 TQTMKLLKLRRNIVKLSLYRHFTNTLILAVAASIVFIIWTTMKFXIVTCQSDWRELWVDD 1384
             QTMK L+LR+N VK SLYRHFTNTLI A+ AS+VF++WTT  F    CQSDW E WVDD
Sbjct: 414  AQTMKTLRLRKNTVKFSLYRHFTNTLIFAILASVVFMVWTTKTFRFAKCQSDWMERWVDD 473

Query: 1385 AIWAXAISMIPLVIMXLWRTSAKHQSFAF 1471
            A W+   S+I +VIM LWR SA +Q +AF
Sbjct: 474  AFWSFLFSLILIVIMFLWRPSANNQRYAF 502


>ref|XP_875413.3| PREDICTED: transmembrane protein 87B [Bos taurus].
          Length = 538

 Score =  366 bits (939), Expect = e-101
 Identities = 206/440 (46%), Positives = 270/440 (61%), Gaps = 3/440 (0%)
 Frame = +2

Query: 161  AADRSKWRIPISLGKNYFSFGKILFKNTTIFLKFDGEPCDVSLNITWYLKSADCYNEIYN 340
            AADR K   P+   K  F+  +I F      +K    P  V   I W+L+   C+N+   
Sbjct: 32   AADRQKSG-PLIFRKTMFNSTEIKFS-----VKSFSCPRTVKFTIEWHLEHHTCHNDY-- 83

Query: 341  FKTEEVETYLENLKEKKGLSGKYQTSSKLFQNCSELFKAQSFS---GEFIHRLPLLGEKQ 511
                   + LE L +K  L          F+N SE +  ++ +   G  +   P L  KQ
Sbjct: 84   -------SELEELSQKHELPVTEDFCGHYFKN-SECWTTKNENVECGGDLQLFPPLNNKQ 135

Query: 512  ESKENGTNLTVTGDKTVMHDPLKTWQDAPYIFIVHVGIXXXXXXXXXXXXXXLFTMTVEV 691
                 G      G   V+    KT +D  +IFIV V                   +++ +
Sbjct: 136  LISNTGNVSNQEGSTDVV---AKTQRDGFHIFIVSVKTEKTDASWN-------LNVSLSM 185

Query: 692  KGPYEYLTLEDYPLMIFFMVMCIVYVLFGVLWLAWSACYWRDLLRIQFWIGAVIFLGMLE 871
             GPY Y++  D+PLMIF+MVMCIVY+L+GVLWL WSACYW+D+LRIQFWI AVIFLGMLE
Sbjct: 186  LGPYGYISASDWPLMIFYMVMCIVYILYGVLWLMWSACYWKDILRIQFWIAAVIFLGMLE 245

Query: 872  KAVFYAEFQNIRYKGESVQGALILAELLSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHK 1051
            KAVFYAE+QNI   G S QG LI AEL+SA+KR+LAR LVIIVSLGYGIVKPRLG  +H+
Sbjct: 246  KAVFYAEYQNINSTGLSTQGLLIFAELISAIKRTLARLLVIIVSLGYGIVKPRLGTVMHR 305

Query: 1052 VVVAGALYLLFSGMEGVLRVTGHFSYPLALIVNLALSAINACIILWIFISLTQTMKLLKL 1231
            V+  G LY +F+ +EGV+RV G  ++   ++ ++ L+ I++  + +IFISL QTMK L+L
Sbjct: 306  VIGLGVLYFIFAAVEGVMRVIGGSNHLAVVLGDIILALIDSIFVWFIFISLAQTMKTLRL 365

Query: 1232 RRNIVKLSLYRHFTNTLILAVAASIVFIIWTTMKFXIVTCQSDWRELWVDDAIWAXAISM 1411
            R+N VK SLYRHFTNTLI A+ AS+VF++WTT  F    CQSDW E WVDDA W+   S+
Sbjct: 366  RKNTVKFSLYRHFTNTLIFAILASVVFMVWTTKTFRFAKCQSDWMERWVDDAFWSFLFSL 425

Query: 1412 IPLVIMXLWRTSAKHQSFAF 1471
            I +VIM LWR SA +Q +AF
Sbjct: 426  ILIVIMFLWRPSANNQRYAF 445


>ref|NP_001092634.1| protein GPR107 [Bos taurus].
          Length = 566

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 45/211 (21%), Positives = 88/211 (41%), Gaps = 11/211 (5%)
 Frame = +2

Query: 671  FTMTVEV--KGPYEYLTLEDYPLMIFFMVMCIVYVLFGVLWLAWSACYWRDLLRIQFWIG 844
            F++ +E+  K P  YL+  + PL   ++ M   + L G +W+        D+ +I + + 
Sbjct: 244  FSLDIEITEKNPDSYLSAGEIPLPKLYISMAFFFFLSGTIWIHILRKRRNDVFKIHWLMA 303

Query: 845  AVIFLGMLEKAVFYAEFQNIRYKGESVQGALILAELLSAVKRSLARTLVIIVSLGYGIVK 1024
            A+ F   L       ++  I  +G  ++G  ++  +   +K +L    + ++  G+  +K
Sbjct: 304  ALPFTKSLSLVFHAIDYHYISSQGFPIEGWAVVYYITHLLKGALLFITIALIGTGWAFIK 363

Query: 1025 PRLG--------VTLHKVVVAGALYLLFSGMEGVLRVTGHFSYPLALIVNLALSAINACI 1180
              L         V +   V+A   Y++    E      G +   L L+  L   AI    
Sbjct: 364  HILSDKDKKVFMVVIPLQVLANVAYIIIESTEEGTTEYGLWKDSLFLVDLLCCGAI-LFP 422

Query: 1181 ILWIFISLTQTMKL-LKLRRNIVKLSLYRHF 1270
            ++W    L +      K   N+ KL L+RH+
Sbjct: 423  VVWSIRHLQEASATDGKAAINLAKLKLFRHY 453


>ref|NP_001068801.1| protein GPR108 precursor [Bos taurus].
          Length = 548

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 41/208 (19%), Positives = 86/208 (41%), Gaps = 9/208 (4%)
 Frame = +2

Query: 674  TMTVEVKGPYEYLTLEDYPLMIFFMVMCIVYVLFGVLWLAWSACYWRDLLRIQFWIGAVI 853
            T+ +  K P  YL+  + PL   +MVM   ++  G+ W++       ++ +I + + A+ 
Sbjct: 246  TVMIREKNPEGYLSAAEIPLFKLYMVMSACFLGAGIFWVSILCKNTYNVFKIHWLMAALT 305

Query: 854  FLGMLEKAVFYAEFQNIRYKGESVQGALILAELLSAVKRSLARTLVIIVSLGYGIVKPRL 1033
            F   +        +  I  +G  ++G  ++  +   +K +L    + ++  G+  VK  L
Sbjct: 306  FTKSVSLLFHSINYYFINSQGHPIEGLAVMHYITHLLKGALLFITIALIGSGWAFVKYVL 365

Query: 1034 --------GVTLHKVVVAGALYLLFSGMEGVLRVTGHFSYPLALIVNLALSAINACIILW 1189
                    G+ +   V+A   Y++    E      G +   +  +V+L         ++W
Sbjct: 366  SDKEKKIFGIVIPLQVLANVAYIVMESREEGASDYGIWK-EILFLVDLICCGTILFPVVW 424

Query: 1190 IFISLTQTMKL-LKLRRNIVKLSLYRHF 1270
                L        K+  N+ KL L+RH+
Sbjct: 425  SIRHLQDASGTDGKVAVNLAKLKLFRHY 452


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,202,129
Number of extensions: 1311780
Number of successful extensions: 3718
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3710
Number of HSP's successfully gapped: 5
Length of query: 490
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 384
Effective length of database: 14,174,046
Effective search space: 5442833664
Effective search space used: 5442833664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007656
         (1471 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_851056.1| PREDICTED: similar to CG17660-PA [Canis familia...   775   0.0  
Alignment   gi|XP_854588.1| PREDICTED: similar to CG17660-PA [Canis familia...   363   e-100
Alignment   gi|XP_537814.2| PREDICTED: similar to G protein-coupled recepto...    51   3e-06

>ref|XP_851056.1| PREDICTED: similar to CG17660-PA [Canis familiaris].
          Length = 555

 Score =  775 bits (2000), Expect = 0.0
 Identities = 394/473 (83%), Positives = 410/473 (86%)
 Frame = +2

Query: 53   MASAAWXXXXXXXXXXXXGAPTSPLSHFGVGPASVAAADRSKWRIPISLGKNYFSFGKIL 232
            MA+AAW            GA  SPLS  GVGPA VAAADRSKW IP+  GKNYFSFGKIL
Sbjct: 1    MAAAAWLQVLPIILLLL-GAQPSPLSLLGVGPAPVAAADRSKWHIPMPSGKNYFSFGKIL 59

Query: 233  FKNTTIFLKFDGEPCDVSLNITWYLKSADCYNEIYNFKTEEVETYLENLKEKKGLSGKYQ 412
            FKNTT+FLKFDGEPCDVSLNITWYLKSADCYNEIYNFK EEVETYLENLKEKKGLSGKYQ
Sbjct: 60   FKNTTVFLKFDGEPCDVSLNITWYLKSADCYNEIYNFKGEEVETYLENLKEKKGLSGKYQ 119

Query: 413  TSSKLFQNCSELFKAQSFSGEFIHRLPLLGEKQESKENGTNLTVTGDKTVMHDPLKTWQD 592
            TSSKLFQNCSELFKAQSFSG+ +HRLPLLGEKQE+KENGTNLT+TGDKT MHDPLKTWQD
Sbjct: 120  TSSKLFQNCSELFKAQSFSGDSVHRLPLLGEKQEAKENGTNLTLTGDKTAMHDPLKTWQD 179

Query: 593  APYIFIVHVGIXXXXXXXXXXXXXXLFTMTVEVKGPYEYLTLEDYPLMIFFMVMCIVYVL 772
            APYIFIVH+G               LFTMTVEVKGPYEYLTLE+YPLMIFFMVMCIVYVL
Sbjct: 180  APYIFIVHIGFSSSKESSKENSLSNLFTMTVEVKGPYEYLTLEEYPLMIFFMVMCIVYVL 239

Query: 773  FGVLWLAWSACYWRDLLRIQFWIGAVIFLGMLEKAVFYAEFQNIRYKGESVQGALILAEL 952
            FGVLWLAWSACYWRDLLRIQFWIGAVIFLGMLEKAVFYAEFQNIRYKGESVQGALILAEL
Sbjct: 240  FGVLWLAWSACYWRDLLRIQFWIGAVIFLGMLEKAVFYAEFQNIRYKGESVQGALILAEL 299

Query: 953  LSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTGHFSYP 1132
            LSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTG     
Sbjct: 300  LSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTG-AQTD 358

Query: 1133 LALIVNLALSAINACIILWIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAASIVF 1312
            LA +  + L+ ++  +  WIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAASIVF
Sbjct: 359  LASLAFIPLAFLDTALCWWIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAASIVF 418

Query: 1313 IIWTTMKFXIVTCQSDWRELWVDDAIWAXAISMIPLVIMXLWRTSAKHQSFAF 1471
            IIWTTMKF IVTCQSDWRELWVDDAIW    SMI  VIM LWR SA +Q FAF
Sbjct: 419  IIWTTMKFRIVTCQSDWRELWVDDAIWRLLFSMILFVIMVLWRPSANNQRFAF 471


>ref|XP_854588.1| PREDICTED: similar to CG17660-PA [Canis familiaris].
          Length = 556

 Score =  363 bits (931), Expect = e-100
 Identities = 210/461 (45%), Positives = 274/461 (59%), Gaps = 10/461 (2%)
 Frame = +2

Query: 119  SPLSHFGV-----GPASVAAA-DRSKWRIPISLGKNYFSFGKILFKNTTIFLKFDGEPCD 280
            +PL H  +      PA V+A  +   W   +        F K +F +T I        C 
Sbjct: 21   APLLHVALCLSCWAPAVVSAVPELGLWAATVDDKSGPLIFRKTMFNSTEIKFSVKSFSCS 80

Query: 281  --VSLNITWYLKSADCYNEIYNFKTEEVETYLENLKEKKGLSGKYQTSSKLFQNCSELFK 454
              V   I W+LK   C NE    K EE  +   +L   + L G Y  + + +    E   
Sbjct: 81   GPVKFTIEWHLKYHTCQNEYS--KLEEELSQKHDLSVDEDLCGHYFKNIECWTTKYENLD 138

Query: 455  AQSFSGEFIHRLPLLGEKQE--SKENGTNLTVTGDKTVMHDPLKTWQDAPYIFIVHVGIX 628
              S    F    P L  K+   + +N +N   + D        +T +D  +IFIV +   
Sbjct: 139  CNSDLQVF----PSLNNKEPVTNTKNVSNQERSTDVVA-----RTQRDGFHIFIVSIKTE 189

Query: 629  XXXXXXXXXXXXXLFTMTVEVKGPYEYLTLEDYPLMIFFMVMCIVYVLFGVLWLAWSACY 808
                            +++ + GP+ Y++  D+PLMIF+MVMCIVY+L+GVLWL WSACY
Sbjct: 190  KTDARWN-------LNVSLSMIGPHGYISASDWPLMIFYMVMCIVYILYGVLWLMWSACY 242

Query: 809  WRDLLRIQFWIGAVIFLGMLEKAVFYAEFQNIRYKGESVQGALILAELLSAVKRSLARTL 988
            W+D+LRIQFWI AVIFLGMLEKAVFY E+QNI   G S QG LI AEL+SAVKR+LAR L
Sbjct: 243  WKDILRIQFWIAAVIFLGMLEKAVFYTEYQNISSTGLSTQGLLIFAELISAVKRTLARLL 302

Query: 989  VIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTGHFSYPLALIVNLALSAI 1168
            VIIVSLGYGIVKPRLG  +H+VV  G LY +F+ +EGV+RV G  ++   +  ++ L+ I
Sbjct: 303  VIIVSLGYGIVKPRLGTVMHRVVGLGILYFIFAAIEGVMRVIGGSNHLAVIFGDIILAVI 362

Query: 1169 NACIILWIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAASIVFIIWTTMKFXIVT 1348
            ++  + +IFISL QTMK L+LR+N VK SLYRHFTNTLI AV ASIVF++WTT  F I  
Sbjct: 363  DSIFVWFIFISLAQTMKTLRLRKNTVKFSLYRHFTNTLIFAVLASIVFMVWTTKTFRIAK 422

Query: 1349 CQSDWRELWVDDAIWAXAISMIPLVIMXLWRTSAKHQSFAF 1471
            CQSDW E WVDDA W+   S+I +VIM LWR SA +Q +AF
Sbjct: 423  CQSDWMERWVDDAFWSFLFSLILIVIMFLWRPSANNQRYAF 463


>ref|XP_537814.2| PREDICTED: similar to G protein-coupled receptor 107 [Canis
            familiaris].
          Length = 610

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 44/211 (20%), Positives = 88/211 (41%), Gaps = 11/211 (5%)
 Frame = +2

Query: 671  FTMTVEV--KGPYEYLTLEDYPLMIFFMVMCIVYVLFGVLWLAWSACYWRDLLRIQFWIG 844
            F++ +E+  K P  YL+  + PL   ++ M   + L G +W+        D+ +I + + 
Sbjct: 299  FSLDIEITEKNPDSYLSAGEIPLPKLYISMAFFFFLSGTIWIHILRKRRNDVFKIHWLMA 358

Query: 845  AVIFLGMLEKAVFYAEFQNIRYKGESVQGALILAELLSAVKRSLARTLVIIVSLGYGIVK 1024
            A+ F   L       ++  I  +G  ++G  ++  +   +K +L    + ++  G+  +K
Sbjct: 359  ALPFTKSLSLVFHAIDYHYISSQGFPIEGWAVVYYITHLLKGALLFITIALIGTGWAFIK 418

Query: 1025 PRLG--------VTLHKVVVAGALYLLFSGMEGVLRVTGHFSYPLALIVNLALSAINACI 1180
              L         + +   V+A   Y++    E      G +   L L+  L   AI    
Sbjct: 419  HILSDKDKKIFMIVIPLQVLANVAYIIIESTEEGTTEYGLWKDSLFLVDLLCCGAI-LFP 477

Query: 1181 ILWIFISLTQTMKL-LKLRRNIVKLSLYRHF 1270
            ++W    L +      K   N+ KL L+RH+
Sbjct: 478  VVWSIRHLQEASATDGKAAINLAKLKLFRHY 508


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 54,556,344
Number of extensions: 1356300
Number of successful extensions: 3869
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3864
Number of HSP's successfully gapped: 3
Length of query: 490
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 383
Effective length of database: 15,307,552
Effective search space: 5862792416
Effective search space used: 5862792416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007656
         (1471 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_776095.2| transmembrane protein 87A isoform 1 [Mus muscul...   784   0.0  
Alignment   gi|NP_001103966.1| transmembrane protein 87A isoform 2 [Mus mus...   747   0.0  
Alignment   gi|NP_001103967.1| transmembrane protein 87A isoform 3 [Mus mus...   747   0.0  
Alignment   gi|NP_082524.2| transmembrane protein 87B precursor [Mus muscul...   364   e-100
Alignment   gi|NP_848875.2| protein GPR107 precursor [Mus musculus].              50   6e-06

>ref|NP_776095.2| transmembrane protein 87A isoform 1 [Mus musculus].
          Length = 560

 Score =  784 bits (2024), Expect = 0.0
 Identities = 395/477 (82%), Positives = 415/477 (87%)
 Frame = +2

Query: 41   MAVKMASAAWXXXXXXXXXXXXGAPTSPLSHFGVGPASVAAADRSKWRIPISLGKNYFSF 220
            MAVKMA AAW            GA   PLS  G GPA V AADRSKW IP+  GK YF+F
Sbjct: 1    MAVKMAVAAWLQVSPVIFLLL-GAQPFPLSFLGAGPAPVFAADRSKWHIPMPSGKGYFNF 59

Query: 221  GKILFKNTTIFLKFDGEPCDVSLNITWYLKSADCYNEIYNFKTEEVETYLENLKEKKGLS 400
            GKILF+NTTI LKFDGEPCD SLNITW+LKSADCYNEIYNFK +E+E+YLENLK KKGLS
Sbjct: 60   GKILFRNTTILLKFDGEPCDQSLNITWFLKSADCYNEIYNFKADEIESYLENLKGKKGLS 119

Query: 401  GKYQTSSKLFQNCSELFKAQSFSGEFIHRLPLLGEKQESKENGTNLTVTGDKTVMHDPLK 580
            G+YQTSS+LFQNCSEL+KAQSFSG+F HRLPLLGEKQE+KEN TN+T TGDK  MH+PL+
Sbjct: 120  GRYQTSSRLFQNCSELYKAQSFSGDFTHRLPLLGEKQEAKENATNVTFTGDKIAMHEPLQ 179

Query: 581  TWQDAPYIFIVHVGIXXXXXXXXXXXXXXLFTMTVEVKGPYEYLTLEDYPLMIFFMVMCI 760
            TWQDAPYIFIVHVGI              LFTMTVEVKGPYEYLTLEDYPLMIFFMVMCI
Sbjct: 180  TWQDAPYIFIVHVGISSSKESPKENALSNLFTMTVEVKGPYEYLTLEDYPLMIFFMVMCI 239

Query: 761  VYVLFGVLWLAWSACYWRDLLRIQFWIGAVIFLGMLEKAVFYAEFQNIRYKGESVQGALI 940
            VYVLFGVLWLAWSACYWRDLLRIQFWIGAVIFLGM EKAVFYAEFQNIRYKGESVQ AL+
Sbjct: 240  VYVLFGVLWLAWSACYWRDLLRIQFWIGAVIFLGMFEKAVFYAEFQNIRYKGESVQNALV 299

Query: 941  LAELLSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTGH 1120
            LAELLSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTG+
Sbjct: 300  LAELLSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTGY 359

Query: 1121 FSYPLALIVNLALSAINACIILWIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAA 1300
            FSY LALIV+LALSAI+ACIILWIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAA
Sbjct: 360  FSYSLALIVSLALSAIDACIILWIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAA 419

Query: 1301 SIVFIIWTTMKFXIVTCQSDWRELWVDDAIWAXAISMIPLVIMXLWRTSAKHQSFAF 1471
            SIVFIIWTTMKF IVTCQSDWRELWVDDAIW    SMI  VIM LWR SA +Q FAF
Sbjct: 420  SIVFIIWTTMKFRIVTCQSDWRELWVDDAIWRLLFSMILFVIMILWRPSANNQRFAF 476


>ref|NP_001103966.1| transmembrane protein 87A isoform 2 [Mus musculus].
          Length = 559

 Score =  747 bits (1929), Expect = 0.0
 Identities = 379/477 (79%), Positives = 402/477 (84%)
 Frame = +2

Query: 41   MAVKMASAAWXXXXXXXXXXXXGAPTSPLSHFGVGPASVAAADRSKWRIPISLGKNYFSF 220
            MAVKMA AAW            GA   PLS  G GPA V AADRSKW IP+  GK YF+F
Sbjct: 1    MAVKMAVAAWLQVSPVIFLLL-GAQPFPLSFLGAGPAPVFAADRSKWHIPMPSGKGYFNF 59

Query: 221  GKILFKNTTIFLKFDGEPCDVSLNITWYLKSADCYNEIYNFKTEEVETYLENLKEKKGLS 400
            GKILF+NTTI LKFDGEPCD SLNITW+LKSADCYNEIYNFK +E+E+YLENLK KKGLS
Sbjct: 60   GKILFRNTTILLKFDGEPCDQSLNITWFLKSADCYNEIYNFKADEIESYLENLKGKKGLS 119

Query: 401  GKYQTSSKLFQNCSELFKAQSFSGEFIHRLPLLGEKQESKENGTNLTVTGDKTVMHDPLK 580
            G+YQTSS+LFQNCSEL+KAQSFSG+F HRLPLLGEKQE+KEN TN+T TGDK  MH+PL+
Sbjct: 120  GRYQTSSRLFQNCSELYKAQSFSGDFTHRLPLLGEKQEAKENATNVTFTGDKIAMHEPLQ 179

Query: 581  TWQDAPYIFIVHVGIXXXXXXXXXXXXXXLFTMTVEVKGPYEYLTLEDYPLMIFFMVMCI 760
            TWQDAPYIFIVHVGI              LFTMTVEVKGPYEYLTLEDYPLMIFFMVMCI
Sbjct: 180  TWQDAPYIFIVHVGISSSKESPKENALSNLFTMTVEVKGPYEYLTLEDYPLMIFFMVMCI 239

Query: 761  VYVLFGVLWLAWSACYWRDLLRIQFWIGAVIFLGMLEKAVFYAEFQNIRYKGESVQGALI 940
            VYVLFGVLWLAWSACYWRDLLRIQFWIGAVIFLGM EKAVFYAEFQNIRYKGESVQ AL+
Sbjct: 240  VYVLFGVLWLAWSACYWRDLLRIQFWIGAVIFLGMFEKAVFYAEFQNIRYKGESVQNALV 299

Query: 941  LAELLSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTGH 1120
            LAELLSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTG 
Sbjct: 300  LAELLSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTG- 358

Query: 1121 FSYPLALIVNLALSAINACIILWIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAA 1300
                LA +  + L+ ++  +  WIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAA
Sbjct: 359  AQTDLASLAFIPLAFLDTALCWWIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAA 418

Query: 1301 SIVFIIWTTMKFXIVTCQSDWRELWVDDAIWAXAISMIPLVIMXLWRTSAKHQSFAF 1471
            SIVFIIWTTMKF IVTCQSDWRELWVDDAIW    SMI  VIM LWR SA +Q FAF
Sbjct: 419  SIVFIIWTTMKFRIVTCQSDWRELWVDDAIWRLLFSMILFVIMILWRPSANNQRFAF 475


>ref|NP_001103967.1| transmembrane protein 87A isoform 3 [Mus musculus].
          Length = 558

 Score =  747 bits (1929), Expect = 0.0
 Identities = 379/477 (79%), Positives = 402/477 (84%)
 Frame = +2

Query: 41   MAVKMASAAWXXXXXXXXXXXXGAPTSPLSHFGVGPASVAAADRSKWRIPISLGKNYFSF 220
            MAVKMA AAW            GA   PLS  G GPA V AADRSKW IP+  GK YF+F
Sbjct: 1    MAVKMAVAAWLQVSPVIFLLL-GAQPFPLSFLGAGPAPVFAADRSKWHIPMPSGKGYFNF 59

Query: 221  GKILFKNTTIFLKFDGEPCDVSLNITWYLKSADCYNEIYNFKTEEVETYLENLKEKKGLS 400
            GKILF+NTTI LKFDGEPCD SLNITW+LKSADCYNEIYNFK +E+E+YLENLK KKGLS
Sbjct: 60   GKILFRNTTILLKFDGEPCDQSLNITWFLKSADCYNEIYNFKADEIESYLENLKGKKGLS 119

Query: 401  GKYQTSSKLFQNCSELFKAQSFSGEFIHRLPLLGEKQESKENGTNLTVTGDKTVMHDPLK 580
            G+YQTSS+LFQNCSEL+KAQSFSG+F HRLPLLGEKQE+KEN TN+T TGDK  MH+PL+
Sbjct: 120  GRYQTSSRLFQNCSELYKAQSFSGDFTHRLPLLGEKQEAKENATNVTFTGDKIAMHEPLQ 179

Query: 581  TWQDAPYIFIVHVGIXXXXXXXXXXXXXXLFTMTVEVKGPYEYLTLEDYPLMIFFMVMCI 760
            TWQDAPYIFIVHVGI              LFTMTVEVKGPYEYLTLEDYPLMIFFMVMCI
Sbjct: 180  TWQDAPYIFIVHVGISSSKESPKENALSNLFTMTVEVKGPYEYLTLEDYPLMIFFMVMCI 239

Query: 761  VYVLFGVLWLAWSACYWRDLLRIQFWIGAVIFLGMLEKAVFYAEFQNIRYKGESVQGALI 940
            VYVLFGVLWLAWSACYWRDLLRIQFWIGAVIFLGM EKAVFYAEFQNIRYKGESVQ AL+
Sbjct: 240  VYVLFGVLWLAWSACYWRDLLRIQFWIGAVIFLGMFEKAVFYAEFQNIRYKGESVQNALV 299

Query: 941  LAELLSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTGH 1120
            LAELLSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTG 
Sbjct: 300  LAELLSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTG- 358

Query: 1121 FSYPLALIVNLALSAINACIILWIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAA 1300
                LA +  + L+ ++  +  WIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAA
Sbjct: 359  AQTDLASLAFIPLAFLDTALCWWIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAA 418

Query: 1301 SIVFIIWTTMKFXIVTCQSDWRELWVDDAIWAXAISMIPLVIMXLWRTSAKHQSFAF 1471
            SIVFIIWTTMKF IVTCQSDWRELWVDDAIW    SMI  VIM LWR SA +Q FAF
Sbjct: 419  SIVFIIWTTMKFRIVTCQSDWRELWVDDAIWRLLFSMILFVIMILWRPSANNQRFAF 475


>ref|NP_082524.2| transmembrane protein 87B precursor [Mus musculus].
          Length = 555

 Score =  364 bits (934), Expect = e-100
 Identities = 205/452 (45%), Positives = 272/452 (60%), Gaps = 10/452 (2%)
 Frame = +2

Query: 146  PASV-AAADRSKWRIPISLGKNYFSFGKILFKNTTIFLKFDGEPCD--VSLNITWYLKSA 316
            PA+V A  +   W   ++       F K +F +T I        C   V   I W+LK  
Sbjct: 37   PAAVDAVPELGLWTRTVNDKSGPLVFRKTMFNSTEIKFSVKSFSCSGPVKFTIEWHLKYH 96

Query: 317  DCYNEIYNFKTEEVETYLENLKEKKGLSGK-----YQTSSKLFQNCSELFKAQSFSGEF- 478
             C+N+  + +        E L ++  L        Y  +   +   SE     S S  F 
Sbjct: 97   TCHNDYPDLE--------EELSQRHELHADPDVCAYFKNIDCWTTKSENLDCSSDSQAFP 148

Query: 479  -IHRLPLLGEKQESKENGTNLTVTGDKTVMHDPLKTWQDAPYIFIVHVGIXXXXXXXXXX 655
             ++   L G +  S + G+   V           +T +D  +IFIV +            
Sbjct: 149  SLNNKELTGIRNISSQEGSTDVVA----------RTQKDGFHIFIVSIKTEKTDAVWD-- 196

Query: 656  XXXXLFTMTVEVKGPYEYLTLEDYPLMIFFMVMCIVYVLFGVLWLAWSACYWRDLLRIQF 835
                   +++ + GP+ Y++  D+PLMIF+MVMCIVY+L+GVLWL WSACYW+D+LRIQF
Sbjct: 197  -----LNVSLSMVGPHGYISASDWPLMIFYMVMCIVYILYGVLWLLWSACYWKDILRIQF 251

Query: 836  WIGAVIFLGMLEKAVFYAEFQNIRYKGESVQGALILAELLSAVKRSLARTLVIIVSLGYG 1015
            WI AVIFLGMLEKAVFY+E+QNI   G S QG LI AEL+SAVKR+LAR LVIIVSLGYG
Sbjct: 252  WIAAVIFLGMLEKAVFYSEYQNINSTGLSTQGLLIFAELISAVKRTLARLLVIIVSLGYG 311

Query: 1016 IVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTGHFSYPLALIVNLALSAINACIILWIF 1195
            IVKPRLG  +H+V+  G LYL+F+ +EGV+RV G   +   ++ ++ L+ I++  + +IF
Sbjct: 312  IVKPRLGTVMHRVIGLGLLYLIFAAIEGVMRVIGGSKHLAVVLTDIVLAVIDSIFVWFIF 371

Query: 1196 ISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAASIVFIIWTTMKFXIVTCQSDWRELW 1375
            ISL QTMK L+LR+N VK SLYRHFTNTLI AV ASIVF++WTT  F I  CQSDW ELW
Sbjct: 372  ISLAQTMKTLRLRKNTVKFSLYRHFTNTLIFAVLASIVFMVWTTKTFRIAKCQSDWMELW 431

Query: 1376 VDDAIWAXAISMIPLVIMXLWRTSAKHQSFAF 1471
            VDDA W+   S+I +VIM LWR SA +Q +AF
Sbjct: 432  VDDAFWSFLFSVILIVIMFLWRPSANNQRYAF 463


>ref|NP_848875.2| protein GPR107 precursor [Mus musculus].
          Length = 551

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 42/207 (20%), Positives = 85/207 (41%), Gaps = 9/207 (4%)
 Frame = +2

Query: 677  MTVEVKGPYEYLTLEDYPLMIFFMVMCIVYVLFGVLWLAWSACYWRDLLRIQFWIGAVIF 856
            + +  K P  YL+  + PL   ++ M + + L G +W+        D+ +I + + A+ F
Sbjct: 243  IAITEKNPNSYLSAGEIPLPKLYVSMALFFFLSGTIWIHILRKRRNDVFKIHWLMAALPF 302

Query: 857  LGMLEKAVFYAEFQNIRYKGESVQGALILAELLSAVKRSLARTLVIIVSLGYGIVKPRLG 1036
               L       ++  I  +G  ++G  ++  +   +K +L    + ++  G+  +K  L 
Sbjct: 303  TKSLSLVFHAIDYHYISSQGFPIEGWAVVYYITHLLKGALLFITIALIGTGWAFIKHILS 362

Query: 1037 --------VTLHKVVVAGALYLLFSGMEGVLRVTGHFSYPLALIVNLALSAINACIILWI 1192
                    + +   V+A   Y++    E      G +   L L+  L   AI    ++W 
Sbjct: 363  DKDKKIFMIVIPLQVLANVAYIIIESTEEGTTEYGLWKDSLFLVDLLCCGAI-LFPVVWS 421

Query: 1193 FISLTQTMKL-LKLRRNIVKLSLYRHF 1270
               L +      K   N+ KL L+RH+
Sbjct: 422  IRHLQEASATDGKAAINLAKLRLFRHY 448


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,021,596
Number of extensions: 1152162
Number of successful extensions: 3350
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3342
Number of HSP's successfully gapped: 5
Length of query: 490
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 385
Effective length of database: 12,463,779
Effective search space: 4798554915
Effective search space used: 4798554915
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007656
         (1471 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_001929255.2| PREDICTED: transmembrane protein 87A [Sus sc...   823   0.0  
Alignment   gi|XP_003124859.2| PREDICTED: transmembrane protein 87B [Sus sc...   366   e-101

>ref|XP_001929255.2| PREDICTED: transmembrane protein 87A [Sus scrofa].
          Length = 560

 Score =  823 bits (2126), Expect = 0.0
 Identities = 419/477 (87%), Positives = 426/477 (89%)
 Frame = +2

Query: 41   MAVKMASAAWXXXXXXXXXXXXGAPTSPLSHFGVGPASVAAADRSKWRIPISLGKNYFSF 220
            MAVKMASAAW            GAPTSPLSHFGVGPASVAAADRSKWRIPISLGKNYFSF
Sbjct: 1    MAVKMASAAWLQVLPVILLLLLGAPTSPLSHFGVGPASVAAADRSKWRIPISLGKNYFSF 60

Query: 221  GKILFKNTTIFLKFDGEPCDVSLNITWYLKSADCYNEIYNFKTEEVETYLENLKEKKGLS 400
            GKILFKNTTIFLKFDGEPCDVSLNITWYLKSADCYNEIYNFKTEEVETYLENLKEKKGLS
Sbjct: 61   GKILFKNTTIFLKFDGEPCDVSLNITWYLKSADCYNEIYNFKTEEVETYLENLKEKKGLS 120

Query: 401  GKYQTSSKLFQNCSELFKAQSFSGEFIHRLPLLGEKQESKENGTNLTVTGDKTVMHDPLK 580
            GKYQTSSKLFQNCSELFKAQSFSGEFIHRLPLLGEKQESKENGTNLTVTGDKTVMHDPLK
Sbjct: 121  GKYQTSSKLFQNCSELFKAQSFSGEFIHRLPLLGEKQESKENGTNLTVTGDKTVMHDPLK 180

Query: 581  TWQDAPYIFIVHVGIXXXXXXXXXXXXXXLFTMTVEVKGPYEYLTLEDYPLMIFFMVMCI 760
            TWQDAPYIFIVHVGI              LFTMTVEVKGPYEYLTLEDYPLMIFFMVMCI
Sbjct: 181  TWQDAPYIFIVHVGISSSKESSKENSPSSLFTMTVEVKGPYEYLTLEDYPLMIFFMVMCI 240

Query: 761  VYVLFGVLWLAWSACYWRDLLRIQFWIGAVIFLGMLEKAVFYAEFQNIRYKGESVQGALI 940
            VYVLFGVLWLAWSACYWRDLLRIQFWIGAVIFLGMLEKAVFYAEFQNIRYKGESVQGALI
Sbjct: 241  VYVLFGVLWLAWSACYWRDLLRIQFWIGAVIFLGMLEKAVFYAEFQNIRYKGESVQGALI 300

Query: 941  LAELLSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTGH 1120
            LAELLSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTG 
Sbjct: 301  LAELLSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTG- 359

Query: 1121 FSYPLALIVNLALSAINACIILWIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAA 1300
                LA +  + L+ ++  +  WIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAA
Sbjct: 360  AQTDLASLAFIPLAFLDTALCWWIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAA 419

Query: 1301 SIVFIIWTTMKFXIVTCQSDWRELWVDDAIWAXAISMIPLVIMXLWRTSAKHQSFAF 1471
            SIVFIIWTTMKF IVTCQSDWRELWVDDAIW    SMI  VIM LWR SA +Q FAF
Sbjct: 420  SIVFIIWTTMKFRIVTCQSDWRELWVDDAIWRLLFSMILFVIMVLWRPSANNQRFAF 476


>ref|XP_003124859.2| PREDICTED: transmembrane protein 87B [Sus scrofa].
          Length = 529

 Score =  366 bits (940), Expect = e-101
 Identities = 201/446 (45%), Positives = 270/446 (60%), Gaps = 3/446 (0%)
 Frame = +2

Query: 143  GPASVAAA-DRSKWRIPISLGKNYFSFGKILFKNTTIFLKFDGEPCD--VSLNITWYLKS 313
            GPA+V A  +   W   ++       F K +F +T I        C   V   I W+L+ 
Sbjct: 29   GPAAVGAVPELGLWAATVNDKSGPLIFRKTMFNSTEIKFSVKSFSCSGPVKFTIEWHLEY 88

Query: 314  ADCYNEIYNFKTEEVETYLENLKEKKGLSGKYQTSSKLFQNCSELFKAQSFSGEFIHRLP 493
              C+N+          + LE L  K  LS         F+N  E +  ++   +    L 
Sbjct: 89   HTCHNQY---------SELEELSRKHKLSVDEDFCGHYFKN-RECWTTKTEKLDCNSDLQ 138

Query: 494  LLGEKQESKENGTNLTVTGDKTVMHDPLKTWQDAPYIFIVHVGIXXXXXXXXXXXXXXLF 673
            L       ++      V+  +  M    +T +D  +IFIV +                  
Sbjct: 139  LFPSLHNKEQITNTRNVSNQEGSMDVVARTQRDGFHIFIVSIKTEKTDADWN-------L 191

Query: 674  TMTVEVKGPYEYLTLEDYPLMIFFMVMCIVYVLFGVLWLAWSACYWRDLLRIQFWIGAVI 853
             +++ + GP+ Y++  D+PLMIF+MVMCIVY+L+GVLWL WSACYW+D+LRIQFWI AVI
Sbjct: 192  NVSLSMMGPHGYISASDWPLMIFYMVMCIVYILYGVLWLMWSACYWKDILRIQFWIAAVI 251

Query: 854  FLGMLEKAVFYAEFQNIRYKGESVQGALILAELLSAVKRSLARTLVIIVSLGYGIVKPRL 1033
            FLGMLEKAVFYAE+QNI   G S QG LI AEL+S+VKR+LAR LVIIVSLGYGIVKPRL
Sbjct: 252  FLGMLEKAVFYAEYQNINSTGLSTQGLLIFAELISSVKRTLARLLVIIVSLGYGIVKPRL 311

Query: 1034 GVTLHKVVVAGALYLLFSGMEGVLRVTGHFSYPLALIVNLALSAINACIILWIFISLTQT 1213
            G  +H+VV  G LY +F+ +EGV+RV G  ++   ++ ++ L+ I++  + +IFISL QT
Sbjct: 312  GTVMHRVVGLGLLYFIFAAIEGVMRVIGGSNHLAVVLGDIILAVIDSIFVWFIFISLAQT 371

Query: 1214 MKLLKLRRNIVKLSLYRHFTNTLILAVAASIVFIIWTTMKFXIVTCQSDWRELWVDDAIW 1393
            MK L+LR+N VK SLYRHFTNTLI A+ AS+VF++WTT  F I  CQSDW E WVDDA W
Sbjct: 372  MKTLRLRKNTVKFSLYRHFTNTLIFAILASVVFMVWTTKTFRIAKCQSDWMERWVDDAFW 431

Query: 1394 AXAISMIPLVIMXLWRTSAKHQSFAF 1471
            +   S+I +VIM LWR SA +Q +AF
Sbjct: 432  SFLFSLILIVIMFLWRPSANNQRYAF 457


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,461,699
Number of extensions: 835540
Number of successful extensions: 2328
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2322
Number of HSP's successfully gapped: 2
Length of query: 490
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 387
Effective length of database: 8,779,541
Effective search space: 3397682367
Effective search space used: 3397682367
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007656
         (1471 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_056312.2| transmembrane protein 87A isoform 1 [Homo sapie...   765   0.0  
Alignment   gi|NP_116213.1| transmembrane protein 87B precursor [Homo sapie...   358   7e-99
Alignment   gi|NP_001103973.1| transmembrane protein 87A isoform 2 [Homo sa...   275   1e-73
Alignment   gi|NP_066011.2| protein GPR107 isoform 3 [Homo sapiens].              51   3e-06
Alignment   gi|NP_001073921.1| protein GPR108 [Homo sapiens].                     49   9e-06

>ref|NP_056312.2| transmembrane protein 87A isoform 1 [Homo sapiens].
          Length = 555

 Score =  765 bits (1975), Expect = 0.0
 Identities = 388/473 (82%), Positives = 407/473 (86%)
 Frame = +2

Query: 53   MASAAWXXXXXXXXXXXXGAPTSPLSHFGVGPASVAAADRSKWRIPISLGKNYFSFGKIL 232
            MA+AAW            GA  SPLS F  GPA+VAAADRSKW IPI  GKNYFSFGKIL
Sbjct: 1    MAAAAWLQVLPVILLLL-GAHPSPLSFFSAGPATVAAADRSKWHIPIPSGKNYFSFGKIL 59

Query: 233  FKNTTIFLKFDGEPCDVSLNITWYLKSADCYNEIYNFKTEEVETYLENLKEKKGLSGKYQ 412
            F+NTTIFLKFDGEPCD+SLNITWYLKSADCYNEIYNFK EEVE YLE LKEK+GLSGKYQ
Sbjct: 60   FRNTTIFLKFDGEPCDLSLNITWYLKSADCYNEIYNFKAEEVELYLEKLKEKRGLSGKYQ 119

Query: 413  TSSKLFQNCSELFKAQSFSGEFIHRLPLLGEKQESKENGTNLTVTGDKTVMHDPLKTWQD 592
            TSSKLFQNCSELFK Q+FSG+F+HRLPLLGEKQE+KENGTNLT  GDKT MH+PL+TWQD
Sbjct: 120  TSSKLFQNCSELFKTQTFSGDFMHRLPLLGEKQEAKENGTNLTFIGDKTAMHEPLQTWQD 179

Query: 593  APYIFIVHVGIXXXXXXXXXXXXXXLFTMTVEVKGPYEYLTLEDYPLMIFFMVMCIVYVL 772
            APYIFIVH+GI              LFTMTVEVKGPYEYLTLEDYPLMIFFMVMCIVYVL
Sbjct: 180  APYIFIVHIGISSSKESSKENSLSNLFTMTVEVKGPYEYLTLEDYPLMIFFMVMCIVYVL 239

Query: 773  FGVLWLAWSACYWRDLLRIQFWIGAVIFLGMLEKAVFYAEFQNIRYKGESVQGALILAEL 952
            FGVLWLAWSACYWRDLLRIQFWIGAVIFLGMLEKAVFYAEFQNIRYKGESVQGALILAEL
Sbjct: 240  FGVLWLAWSACYWRDLLRIQFWIGAVIFLGMLEKAVFYAEFQNIRYKGESVQGALILAEL 299

Query: 953  LSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTGHFSYP 1132
            LSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTG     
Sbjct: 300  LSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHKVVVAGALYLLFSGMEGVLRVTG-AQTD 358

Query: 1133 LALIVNLALSAINACIILWIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAASIVF 1312
            LA +  + L+ ++  +  WIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAASIVF
Sbjct: 359  LASLAFIPLAFLDTALCWWIFISLTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAASIVF 418

Query: 1313 IIWTTMKFXIVTCQSDWRELWVDDAIWAXAISMIPLVIMXLWRTSAKHQSFAF 1471
            IIWTTMKF IVTCQSDWRELWVDDAIW    SMI  VIM LWR SA +Q FAF
Sbjct: 419  IIWTTMKFRIVTCQSDWRELWVDDAIWRLLFSMILFVIMVLWRPSANNQRFAF 471


>ref|NP_116213.1| transmembrane protein 87B precursor [Homo sapiens].
          Length = 555

 Score =  358 bits (919), Expect = 7e-99
 Identities = 206/450 (45%), Positives = 270/450 (60%), Gaps = 8/450 (1%)
 Frame = +2

Query: 146  PASVAAA-DRSKWRIPISLGKNYFSFGKILFKNTTIFLKFDGEPCD--VSLNITWYLKSA 316
            PA+V A  +   W   ++       F K +F +T I L      C   V   I W+LK  
Sbjct: 37   PAAVRAVPELGLWLETVNDKSGPLIFRKTMFNSTDIKLSVKSFHCSGPVKFTIVWHLKYH 96

Query: 317  DCYNEIYNFKTEEVETYLENLKEKKGLSGK-----YQTSSKLFQNCSELFKAQSFSGEFI 481
             C+NE  N         LE L +K  LS       Y  +   +   +E     S S  F 
Sbjct: 97   TCHNEHSN---------LEELFQKHKLSVDEDFCHYLKNDNCWTTKNENLDCNSDSQVF- 146

Query: 482  HRLPLLGEKQESKENGTNLTVTGDKTVMHDPLKTWQDAPYIFIVHVGIXXXXXXXXXXXX 661
               P L  K+          V+  +  M    +T +D  +IFIV +              
Sbjct: 147  ---PSLNNKELINIRN----VSNQERSMDVVARTQKDGFHIFIVSIKTENTDASWN---- 195

Query: 662  XXLFTMTVEVKGPYEYLTLEDYPLMIFFMVMCIVYVLFGVLWLAWSACYWRDLLRIQFWI 841
                 +++ + GP+ Y++  D+PLMIF+MVMCIVY+L+G+LWL WSACYW+D+LRIQFWI
Sbjct: 196  ---LNVSLSMIGPHGYISASDWPLMIFYMVMCIVYILYGILWLTWSACYWKDILRIQFWI 252

Query: 842  GAVIFLGMLEKAVFYAEFQNIRYKGESVQGALILAELLSAVKRSLARTLVIIVSLGYGIV 1021
             AVIFLGMLEKAVFY+E+QNI   G S QG LI AEL+SA+KR+LAR LVIIVSLGYGIV
Sbjct: 253  AAVIFLGMLEKAVFYSEYQNISNTGLSTQGLLIFAELISAIKRTLARLLVIIVSLGYGIV 312

Query: 1022 KPRLGVTLHKVVVAGALYLLFSGMEGVLRVTGHFSYPLALIVNLALSAINACIILWIFIS 1201
            KPRLG  +H+V+  G LYL+F+ +EGV+RV G  ++   ++ ++ L+ I++  + +IFIS
Sbjct: 313  KPRLGTVMHRVIGLGLLYLIFAAVEGVMRVIGGSNHLAVVLDDIILAVIDSIFVWFIFIS 372

Query: 1202 LTQTMKLLKLRRNIVKLSLYRHFTNTLILAVAASIVFIIWTTMKFXIVTCQSDWRELWVD 1381
            L QTMK L+LR+N VK SLYRHF NTLI AV ASIVF+ WTT  F I  CQSDW E WVD
Sbjct: 373  LAQTMKTLRLRKNTVKFSLYRHFKNTLIFAVLASIVFMGWTTKTFRIAKCQSDWMERWVD 432

Query: 1382 DAIWAXAISMIPLVIMXLWRTSAKHQSFAF 1471
            DA W+   S+I +VIM LWR SA +Q +AF
Sbjct: 433  DAFWSFLFSLILIVIMFLWRPSANNQRYAF 462


>ref|NP_001103973.1| transmembrane protein 87A isoform 2 [Homo sapiens].
          Length = 181

 Score =  275 bits (702), Expect = 1e-73
 Identities = 136/176 (77%), Positives = 146/176 (82%)
 Frame = +2

Query: 53  MASAAWXXXXXXXXXXXXGAPTSPLSHFGVGPASVAAADRSKWRIPISLGKNYFSFGKIL 232
           MA+AAW            GA  SPLS F  GPA+VAAADRSKW IPI  GKNYFSFGKIL
Sbjct: 1   MAAAAWLQVLPVILLLL-GAHPSPLSFFSAGPATVAAADRSKWHIPIPSGKNYFSFGKIL 59

Query: 233 FKNTTIFLKFDGEPCDVSLNITWYLKSADCYNEIYNFKTEEVETYLENLKEKKGLSGKYQ 412
           F+NTTIFLKFDGEPCD+SLNITWYLKSADCYNEIYNFK EEVE YLE LKEK+GLSGKYQ
Sbjct: 60  FRNTTIFLKFDGEPCDLSLNITWYLKSADCYNEIYNFKAEEVELYLEKLKEKRGLSGKYQ 119

Query: 413 TSSKLFQNCSELFKAQSFSGEFIHRLPLLGEKQESKENGTNLTVTGDKTVMHDPLK 580
           TSSKLFQNCSELFK Q+FSG+F+HRLPLLGEKQE+KENGTNLT  GDKT+    LK
Sbjct: 120 TSSKLFQNCSELFKTQTFSGDFMHRLPLLGEKQEAKENGTNLTFIGDKTIQMPFLK 175


>ref|NP_066011.2| protein GPR107 isoform 3 [Homo sapiens].
          Length = 552

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 44/211 (20%), Positives = 88/211 (41%), Gaps = 11/211 (5%)
 Frame = +2

Query: 671  FTMTVEV--KGPYEYLTLEDYPLMIFFMVMCIVYVLFGVLWLAWSACYWRDLLRIQFWIG 844
            F++ +E+  K P  YL+  + PL   ++ M   + L G +W+        D+ +I + + 
Sbjct: 240  FSLDIEITEKNPDSYLSAGEIPLPKLYISMAFFFFLSGTIWIHILRKRRNDVFKIHWLMA 299

Query: 845  AVIFLGMLEKAVFYAEFQNIRYKGESVQGALILAELLSAVKRSLARTLVIIVSLGYGIVK 1024
            A+ F   L       ++  I  +G  ++G  ++  +   +K +L    + ++  G+  +K
Sbjct: 300  ALPFTKSLSLVFHAIDYHYISSQGFPIEGWAVVYYITHLLKGALLFITIALIGTGWAFIK 359

Query: 1025 PRLG--------VTLHKVVVAGALYLLFSGMEGVLRVTGHFSYPLALIVNLALSAINACI 1180
              L         + +   V+A   Y++    E      G +   L L+  L   AI    
Sbjct: 360  HILSDKDKKIFMIVIPLQVLANVAYIIIESTEEGTTEYGLWKDSLFLVDLLCCGAI-LFP 418

Query: 1181 ILWIFISLTQTMKL-LKLRRNIVKLSLYRHF 1270
            ++W    L +      K   N+ KL L+RH+
Sbjct: 419  VVWSIRHLQEASATDGKAAINLAKLKLFRHY 449


>ref|NP_001073921.1| protein GPR108 [Homo sapiens].
          Length = 543

 Score = 49.3 bits (116), Expect = 9e-06
 Identities = 41/212 (19%), Positives = 85/212 (40%), Gaps = 13/212 (6%)
 Frame = +2

Query: 674  TMTVEVKGPYEYLTLEDYPLMIFFMVMCIVYVLFGVLWLAWSACYWRDLLRIQFWIGAVI 853
            T+ +  K P  +L+  + PL   +MVM   ++  G+ W++        + +I + + A+ 
Sbjct: 241  TVMIREKNPDGFLSAAEMPLFKLYMVMSACFLAAGIFWVSILCRNTYSVFKIHWLMAALA 300

Query: 854  FLGMLEKAVFYAEFQNIRYKGESVQGALILAELLSAVKRSLARTLVIIVSLGYGIVKPRL 1033
            F   +        +  I  +G  ++G  ++  +   +K +L    + ++  G+  +K  L
Sbjct: 301  FTKSISLLFHSINYYFINSQGHPIEGLAVMYYIAHLLKGALLFITIALIGSGWAFIKYVL 360

Query: 1034 --------GVTLHKVVVAGALYLLFSGMEGVLRVTGHFSYPL----ALIVNLALSAINAC 1177
                    G+ +   V+A   Y++    E      G   Y L      +V+L        
Sbjct: 361  SDKEKKVFGIVIPMQVLANVAYIIIESRE-----EGASDYVLWKEILFLVDLICCGAILF 415

Query: 1178 IILWIFISLTQTMKL-LKLRRNIVKLSLYRHF 1270
             ++W    L        K+  N+ KL L+RH+
Sbjct: 416  PVVWSIRHLQDASGTDGKVAVNLAKLKLFRHY 447


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 53,751,259
Number of extensions: 1353260
Number of successful extensions: 3868
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3857
Number of HSP's successfully gapped: 5
Length of query: 490
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 383
Effective length of database: 14,770,016
Effective search space: 5656916128
Effective search space used: 5656916128
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007656
         (1471 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr01                                                         396   e-107

>Sscrofa_Chr01 
||          Length = 315321322

 Score =  396 bits (200), Expect = e-107
 Identities = 200/200 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1         acgaaccggaagaaggtgaaatactttgggtaggcactccatggctgtgaagatggcgtc 60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143990834 acgaaccggaagaaggtgaaatactttgggtaggcactccatggctgtgaagatggcgtc 143990893

                                                                             
Query: 61        ggctgcgtggcttcaggtgttgcctgtcattcttcttcttcttctgggggctcccacgtc 120
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143990894 ggctgcgtggcttcaggtgttgcctgtcattcttcttcttcttctgggggctcccacgtc 143990953

                                                                             
Query: 121       cccactgtcacatttcggtgtaggaccggcatccgtggcagctgccgaccgatccaagtg 180
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143990954 cccactgtcacatttcggtgtaggaccggcatccgtggcagctgccgaccgatccaagtg 143991013

                                     
Query: 181       gcgcataccgatatcgttgg 200
                 ||||||||||||||||||||
Sbjct: 143991014 gcgcataccgatatcgttgg 143991033



 Score =  353 bits (178), Expect = 2e-94
 Identities = 178/178 (100%)
 Strand = Plus / Plus

                                                                             
Query: 746       atggtgatgtgtattgtatatgtcctgtttggtgtactgtggctggcatggtctgcttgc 805
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144012472 atggtgatgtgtattgtatatgtcctgtttggtgtactgtggctggcatggtctgcttgc 144012531

                                                                             
Query: 806       tactggagagatctcctgagaattcagttttggatcggtgctgtcatcttcttgggaatg 865
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144012532 tactggagagatctcctgagaattcagttttggatcggtgctgtcatcttcttgggaatg 144012591

                                                                           
Query: 866       cttgagaaagctgtcttctatgcagaatttcagaatatccgatacaaaggagaatctg 923
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144012592 cttgagaaagctgtcttctatgcagaatttcagaatatccgatacaaaggagaatctg 144012649



 Score =  234 bits (118), Expect = 1e-58
 Identities = 118/118 (100%)
 Strand = Plus / Plus

                                                                             
Query: 560       gtaatgcatgatccattgaaaacttggcaagatgcaccatacatttttattgtacatgtt 619
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144006899 gtaatgcatgatccattgaaaacttggcaagatgcaccatacatttttattgtacatgtt 144006958

                                                                           
Query: 620       ggcatttcatcctctaaggaatcatcaaaagaaaattccccaagtagtctttttacca 677
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144006959 ggcatttcatcctctaaggaatcatcaaaagaaaattccccaagtagtctttttacca 144007016



 Score =  216 bits (109), Expect = 3e-53
 Identities = 109/109 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1190      atatttattagtctgactcaaacaatgaagctattaaaacttcggaggaacattgtaaaa 1249
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144020629 atatttattagtctgactcaaacaatgaagctattaaaacttcggaggaacattgtaaaa 144020688

                                                                  
Query: 1250      ctctctttataccgacatttcaccaacacgcttatcttggcggtggcag 1298
                 |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144020689 ctctctttataccgacatttcaccaacacgcttatcttggcggtggcag 144020737



 Score =  202 bits (102), Expect = 4e-49
 Identities = 102/102 (100%)
 Strand = Plus / Plus

                                                                             
Query: 923       gtccaaggtgccctgatccttgcagagctgctttcggctgttaaacgctcactggctcga 982
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144013893 gtccaaggtgccctgatccttgcagagctgctttcggctgttaaacgctcactggctcga 144013952

                                                           
Query: 983       accttggtcatcatagtcagtctgggatatggcattgtcaag 1024
                 ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144013953 accttggtcatcatagtcagtctgggatatggcattgtcaag 144013994



 Score =  186 bits (94), Expect = 2e-44
 Identities = 94/94 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1024      gcctcgccttggtgttaccctccacaaggttgtggtagcaggagccctttatcttttgtt 1083
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144016919 gcctcgccttggtgttaccctccacaaggttgtggtagcaggagccctttatcttttgtt 144016978

                                                   
Query: 1084      ctccggcatggaaggggtcctcagagttactggg 1117
                 ||||||||||||||||||||||||||||||||||
Sbjct: 144016979 ctccggcatggaaggggtcctcagagttactggg 144017012



 Score =  182 bits (92), Expect = 4e-43
 Identities = 108/116 (93%)
 Strand = Plus / Plus

                                                                             
Query: 345       agacagaagaagtggagacatacttagaaaatcttaaggnnnnnnnnggcttgtctggga 404
                 |||||||||||||||||||||||||||||||||||||||        |||||||||||||
Sbjct: 143998938 agacagaagaagtggagacatacttagaaaatcttaaggaaaaaaaaggcttgtctggga 143998997

                                                                         
Query: 405       aatatcaaacatcatcaaaattgttccagaactgcagtgaactctttaaagcacag 460
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143998998 aatatcaaacatcatcaaaattgttccagaactgcagtgaactctttaaagcacag 143999053



 Score =  170 bits (86), Expect = 1e-39
 Identities = 86/86 (100%)
 Strand = Plus / Plus

                                                                             
Query: 261       ttgatggagaaccttgtgacgtatctttgaatataacctggtatctgaaaagtgctgact 320
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143995379 ttgatggagaaccttgtgacgtatctttgaatataacctggtatctgaaaagtgctgact 143995438

                                           
Query: 321       gttataatgagatatacaacttcaag 346
                 ||||||||||||||||||||||||||
Sbjct: 143995439 gttataatgagatatacaacttcaag 143995464



 Score =  145 bits (73), Expect = 8e-32
 Identities = 76/77 (98%)
 Strand = Plus / Plus

                                                                             
Query: 1117      gcatttttcttatcccttggctttgatagtaaacctggccctctcagcaattaatgcctg 1176
                 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 144017788 gcatttttcttatcccttggctttgatagtaaacctggccctctcagcaattgatgcctg 144017847

                                  
Query: 1177      tattattttatggatat 1193
                 |||||||||||||||||
Sbjct: 144017848 tattattttatggatat 144017864



 Score =  123 bits (62), Expect = 3e-25
 Identities = 62/62 (100%)
 Strand = Plus / Plus

                                                                             
Query: 199       ggggaaaaattattttagttttggaaagatcctcttcaaaaatactactatcttcctgaa 258
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143992298 ggggaaaaattattttagttttggaaagatcctcttcaaaaatactactatcttcctgaa 143992357

                   
Query: 259       at 260
                 ||
Sbjct: 143992358 at 143992359



 Score =  119 bits (60), Expect = 5e-24
 Identities = 60/60 (100%)
 Strand = Plus / Plus

                                                                             
Query: 678       tgactgttgaagtgaaaggtccctatgaatacctcacacttgaagactatcctctgatga 737
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144011615 tgactgttgaagtgaaaggtccctatgaatacctcacacttgaagactatcctctgatga 144011674



 Score =  119 bits (60), Expect = 5e-24
 Identities = 96/106 (90%), Gaps = 2/106 (1%)
 Strand = Plus / Plus

                                                                             
Query: 1357      ggattggcgggagctgtgggtagacgatgccatctgggcggntgcta-tctctatgatcc 1415
                 ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct: 144022676 ggattggcgggagctgtgggtagacgatgccatct-ggcggttgctattctctatgatcc 144022734

                                                               
Query: 1416      ctcttgtcatcatggntctgtggcgaacatctgcaaaacaccagag 1461
                    |||||||||||| |||||||||| ||||||||||  |||||||
Sbjct: 144022735 tctttgtcatcatggttctgtggcgaccatctgcaaacaaccagag 144022780



 Score =  117 bits (59), Expect = 2e-23
 Identities = 61/62 (98%)
 Strand = Plus / Plus

                                                                             
Query: 1297      agcatctatcgtgtttatcatctggaccaccatgaagttcangatagtgacttgtcagtc 1356
                 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 144021879 agcatctatcgtgtttatcatctggaccaccatgaagttcaggatagtgacttgtcagtc 144021938

                   
Query: 1357      gg 1358
                 ||
Sbjct: 144021939 gg 144021940



 Score =  111 bits (56), Expect = 1e-21
 Identities = 56/56 (100%)
 Strand = Plus / Plus

                                                                         
Query: 459       agagcttttctggggaattcatacatcgattgcctctcttaggagaaaaacaggag 514
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144001829 agagcttttctggggaattcatacatcgattgcctctcttaggagaaaaacaggag 144001884



 Score =  101 bits (51), Expect = 1e-18
 Identities = 51/51 (100%)
 Strand = Plus / Plus

                                                                    
Query: 513       agtctaaggagaatggaacaaatcttaccgttactggagacaaaactgtaa 563
                 |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144001981 agtctaaggagaatggaacaaatcttaccgttactggagacaaaactgtaa 144002031


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 46,839,064
Number of extensions: 489
Number of successful extensions: 489
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 488
Number of HSP's successfully gapped: 16
Length of query: 1471
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1450
Effective length of database: 2,808,413,156
Effective search space: 4072199076200
Effective search space used: 4072199076200
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)