Animal-Genome cDNA 20110601C-007695


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007695
         (1547 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_776711.1| cyclic AMP-responsive element-binding protein 3...   444   e-125
Alignment   gi|XP_002686042.1| PREDICTED: cAMP responsive element binding p...    99   9e-21
Alignment   gi|XP_885877.2| PREDICTED: cAMP responsive element binding prot...    99   9e-21
Alignment   gi|NP_001029604.1| cyclic AMP-responsive element-binding protei...    85   2e-16
Alignment   gi|XP_002689745.1| PREDICTED: hypothetical protein [Bos taurus].      49   8e-13
Alignment   gi|NP_001096003.1| cyclic AMP-responsive element-binding protei...    71   2e-12
Alignment   gi|NP_001179270.1| cyclic AMP-responsive element-binding protei...    68   3e-11
Alignment   gi|XP_002693578.1| PREDICTED: cAMP responsive element binding p...    68   3e-11

>ref|NP_776711.1| cyclic AMP-responsive element-binding protein 3 [Bos taurus].
          Length = 365

 Score =  444 bits (1143), Expect = e-125
 Identities = 239/341 (70%), Positives = 251/341 (73%)
 Frame = +1

Query: 235  AAPDEALEAPLDWELPLSEALSDWDVEDFLSCLSSPPASLTDFSHSDPYLVHHDHTYSLS 414
            AAPDEAL +P DWELPLSE+LSDWDVEDFLSCL SPPA L  FS+SDP LV HDHTYSLS
Sbjct: 25   AAPDEALTSPPDWELPLSESLSDWDVEDFLSCLPSPPAVLNVFSNSDPCLVQHDHTYSLS 84

Query: 415  QEYVSIDLDNEDYEKEGAQMTSLRVEAPAEQEIGXXXXXXXXXXXXXXXXXXXXXXXXXX 594
            QE+VSIDLDNE YEKE AQMT LRVE PA+QEI                           
Sbjct: 85   QEHVSIDLDNESYEKERAQMTPLRVEEPADQEIARLILTEEEKRLLEKEGLTLPGMLPLT 144

Query: 595  KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 774
            KMEEQVL+RVRRKIRNKKSAQESRRKKKVYVG LESRVLKY+AQNLELQNKVQLLEEQN 
Sbjct: 145  KMEEQVLKRVRRKIRNKKSAQESRRKKKVYVGGLESRVLKYTAQNLELQNKVQLLEEQNL 204

Query: 775  XXXXXXXXXXXMVIQTANKASSSSTCIXXXXXXXXXXXXPAMYSSDTRGSPPAEHGVLSR 954
                       MVIQTANKASSSSTC+            PAMYSSDTRGS PAEH VLSR
Sbjct: 205  SLLDQLRRLQAMVIQTANKASSSSTCVLVLLFSFCLLLVPAMYSSDTRGSLPAEHRVLSR 264

Query: 955  QLRALPSEDVPQRDLPALQSEVPQDSSTHELQAPGNSCCLFHHMAWAPGAESPMKLPLPD 1134
            QLRALPSED PQ + PALQSEVP+DS   ELQA  NSCCLFH M  AP AE P++LPLPD
Sbjct: 265  QLRALPSEDPPQLEPPALQSEVPKDSLNPELQAASNSCCLFHLMPQAPRAEPPLQLPLPD 324

Query: 1135 RFSRSSSPGPIFPLHANLTREGGWLPTHSPISVTLQGRYSG 1257
             FS  S P  I PLHANLTRE GWLPT SP SV LQGRYSG
Sbjct: 325  GFSGCSCPDSISPLHANLTREEGWLPTPSPTSVILQGRYSG 365


>ref|XP_002686042.1| PREDICTED: cAMP responsive element binding protein 3-like 4-like
           [Bos taurus].
          Length = 425

 Score = 98.6 bits (244), Expect(2) = 9e-21
 Identities = 57/128 (44%), Positives = 76/128 (59%), Gaps = 6/128 (4%)
 Frame = +1

Query: 595 KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 774
           K EE+VL++VRRKIRNK+SAQ+SRR+KK Y+  LESRV   +AQN ELQ KVQ LE  N 
Sbjct: 242 KAEERVLKKVRRKIRNKQSAQDSRRRKKEYIDGLESRVAACAAQNQELQRKVQELERHNI 301

Query: 775 XXXXXXXXXXXMVIQTANKASSSSTCIXXXXXXXXXXXXPAMYSSDTRGSPPA------E 936
                      +++QT+NKA+ +STC+            P+   S  +G P A       
Sbjct: 302 SLVTQLRQLQMLIVQTSNKAAQTSTCVLILLFSLALIILPSF--SPFQGLPEAGPEDYQP 359

Query: 937 HGVLSRQL 960
           HGV+SR +
Sbjct: 360 HGVISRNI 367



 Score = 21.2 bits (43), Expect(2) = 9e-21
 Identities = 13/44 (29%), Positives = 15/44 (34%)
 Frame = +3

Query: 1080 PHGLGSWGRIAHEAATARPLLKVF*PRSHLPPACKSHKRGRMAP 1211
            PHG+ S   + H   T  P   V   R   PP  K        P
Sbjct: 359  PHGVISRNILTHRDMTENPENAVEESRLEGPPGAKGANSSTRTP 402


>ref|XP_885877.2| PREDICTED: cAMP responsive element binding protein 3-like 4-like
           isoform 2 [Bos taurus].
          Length = 425

 Score = 98.6 bits (244), Expect(2) = 9e-21
 Identities = 57/128 (44%), Positives = 76/128 (59%), Gaps = 6/128 (4%)
 Frame = +1

Query: 595 KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 774
           K EE+VL++VRRKIRNK+SAQ+SRR+KK Y+  LESRV   +AQN ELQ KVQ LE  N 
Sbjct: 242 KAEERVLKKVRRKIRNKQSAQDSRRRKKEYIDGLESRVAACAAQNQELQRKVQELERHNI 301

Query: 775 XXXXXXXXXXXMVIQTANKASSSSTCIXXXXXXXXXXXXPAMYSSDTRGSPPA------E 936
                      +++QT+NKA+ +STC+            P+   S  +G P A       
Sbjct: 302 SLVTQLRQLQMLIVQTSNKAAQTSTCVLILLFSLALIILPSF--SPFQGLPEAGPEDYQP 359

Query: 937 HGVLSRQL 960
           HGV+SR +
Sbjct: 360 HGVISRNI 367



 Score = 21.2 bits (43), Expect(2) = 9e-21
 Identities = 13/44 (29%), Positives = 15/44 (34%)
 Frame = +3

Query: 1080 PHGLGSWGRIAHEAATARPLLKVF*PRSHLPPACKSHKRGRMAP 1211
            PHG+ S   + H   T  P   V   R   PP  K        P
Sbjct: 359  PHGVISRNILTHRDMTENPENAVEESRLEGPPGAKGANSSTRTP 402


>ref|NP_001029604.1| cyclic AMP-responsive element-binding protein 3-like protein 3 [Bos
            taurus].
          Length = 456

 Score = 84.7 bits (208), Expect = 2e-16
 Identities = 56/161 (34%), Positives = 89/161 (55%), Gaps = 5/161 (3%)
 Frame = +1

Query: 595  KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 774
            K EE++L+++RRKIRNK+SAQESR+KKK Y+  LE+R+   +AQN ELQ KV  LE+QN 
Sbjct: 233  KYEERMLKKIRRKIRNKQSAQESRKKKKEYIDGLETRMSACTAQNQELQRKVLHLEKQNL 292

Query: 775  XXXXXXXXXXXMVIQTANKASSSSTCIXXXXXXXXXXXXPAM--YSSDTRGSPP--AEHG 942
                       +V+Q+ +K++ + TCI            P++  ++S+   SP   A   
Sbjct: 293  SLLEQLKKLQAIVVQSTSKSAQTGTCIAVLLFSFALIVLPSISPFASNRAESPGDFAPVR 352

Query: 943  VLSRQLRALPSEDVPQRDLPALQSEVP-QDSSTHELQAPGN 1062
            V SR L    +  V     P  ++  P  ++   + ++PG+
Sbjct: 353  VFSRTLHNDAASRVAPDTAPGSEAPGPGPNTGALQERSPGS 393


>ref|XP_002689745.1| PREDICTED: hypothetical protein [Bos taurus].
          Length = 169

 Score = 49.3 bits (116), Expect(2) = 8e-13
 Identities = 29/53 (54%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
 Frame = -2

Query: 205 SPASHRHPSPTPAPYETSTERMSRNTEVH-PESTPNPT-HDSHRSSVGHTYGL 53
           S A   HP PTPAPYET TE+M RNT VH    T +P   +  R SVG TY L
Sbjct: 92  SLAGRGHPGPTPAPYETFTEKMRRNTGVHFATRTLSPARRNRDRLSVGPTYRL 144



 Score = 43.5 bits (101), Expect(2) = 8e-13
 Identities = 20/27 (74%), Positives = 23/27 (85%)
 Frame = -3

Query: 369 VAKIGQRCWGTRQAAQEILYVPIAQCL 289
           VA+  Q CWGTRQAAQEIL+VP+AQ L
Sbjct: 36  VAENVQHCWGTRQAAQEILHVPVAQRL 62


>ref|NP_001096003.1| cyclic AMP-responsive element-binding protein 3-like protein 2 [Bos
           taurus].
          Length = 520

 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 35/59 (59%), Positives = 46/59 (77%)
 Frame = +1

Query: 595 KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQN 771
           K EE+ L+++RRKI+NK SAQESRRKKK Y+ SLE +V   S +NLEL+ KV++LE  N
Sbjct: 289 KSEEKALKKIRRKIKNKISAQESRRKKKEYMDSLEKKVESCSTENLELRKKVEVLENTN 347


>ref|NP_001179270.1| cyclic AMP-responsive element-binding protein 3-like protein 1 [Bos
           taurus].
          Length = 520

 Score = 67.8 bits (164), Expect = 3e-11
 Identities = 35/59 (59%), Positives = 44/59 (74%)
 Frame = +1

Query: 595 KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQN 771
           K EE+ L+RVRRKI+NK SAQESRRKKK YV  LE +V  ++++N EL  KV+ LE  N
Sbjct: 285 KAEEKALKRVRRKIKNKISAQESRRKKKEYVECLEKKVETFTSENNELWKKVETLENAN 343


>ref|XP_002693578.1| PREDICTED: cAMP responsive element binding protein 3-like 1 [Bos
           taurus].
          Length = 520

 Score = 67.8 bits (164), Expect = 3e-11
 Identities = 35/59 (59%), Positives = 44/59 (74%)
 Frame = +1

Query: 595 KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQN 771
           K EE+ L+RVRRKI+NK SAQESRRKKK YV  LE +V  ++++N EL  KV+ LE  N
Sbjct: 285 KAEEKALKRVRRKIKNKISAQESRRKKKEYVECLEKKVETFTSENNELWKKVETLENAN 343


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 62,732,208
Number of extensions: 1909455
Number of successful extensions: 9468
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 9411
Number of HSP's successfully gapped: 12
Length of query: 515
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 408
Effective length of database: 14,140,958
Effective search space: 5769510864
Effective search space used: 5769510864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007695
         (1547 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_854750.1| PREDICTED: similar to cAMP responsive element b...   400   e-111
Alignment   gi|XP_855139.1| PREDICTED: similar to cAMP responsive element b...    95   2e-19
Alignment   gi|XP_542164.2| PREDICTED: similar to cAMP responsive element b...    86   1e-16
Alignment   gi|XP_548490.2| PREDICTED: similar to cAMP responsive element b...    71   2e-12
Alignment   gi|XP_540756.2| PREDICTED: similar to cAMP responsive element b...    68   3e-11

>ref|XP_854750.1| PREDICTED: similar to cAMP responsive element binding protein 3
            [Canis familiaris].
          Length = 411

 Score =  400 bits (1029), Expect = e-111
 Identities = 213/326 (65%), Positives = 233/326 (71%)
 Frame = +1

Query: 280  PLSEALSDWDVEDFLSCLSSPPASLTDFSHSDPYLVHHDHTYSLSQEYVSIDLDNEDYEK 459
            PLSEALS+W+ EDFLS + SPPASL   S SD  LVHHDHTYSLSQ++VSIDLD   Y K
Sbjct: 86   PLSEALSEWEAEDFLSSMLSPPASLNVLSSSDSCLVHHDHTYSLSQQHVSIDLDGGSYGK 145

Query: 460  EGAQMTSLRVEAPAEQEIGXXXXXXXXXXXXXXXXXXXXXXXXXXKMEEQVLRRVRRKIR 639
            E AQ T L+VE PAEQEI                           KMEEQVL RVRRKIR
Sbjct: 146  EEAQTTPLQVEEPAEQEIARLILTDEEKRLLEKEGLTLHGTLPLTKMEEQVLTRVRRKIR 205

Query: 640  NKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNXXXXXXXXXXXXMVIQ 819
            NKKSAQESRRKKKVY+G LE+RVLKY+AQNLELQNKVQLLEEQN            M+IQ
Sbjct: 206  NKKSAQESRRKKKVYLGGLENRVLKYTAQNLELQNKVQLLEEQNLSLLDQLRRLQAMLIQ 265

Query: 820  TANKASSSSTCIXXXXXXXXXXXXPAMYSSDTRGSPPAEHGVLSRQLRALPSEDVPQRDL 999
             +NK SSSSTC+            PAMYSSDTRGS PAEHGVLSRQLRALPSED  Q +L
Sbjct: 266  ISNKTSSSSTCVLVLLFSFCLLIVPAMYSSDTRGSLPAEHGVLSRQLRALPSEDPHQLEL 325

Query: 1000 PALQSEVPQDSSTHELQAPGNSCCLFHHMAWAPGAESPMKLPLPDRFSRSSSPGPIFPLH 1179
            PALQSEVP+DSS  ELQAPGNSCC  +H+  APGAESP+KLPLP   S+S    P+ PLH
Sbjct: 326  PALQSEVPKDSSDQELQAPGNSCCPLYHLPQAPGAESPLKLPLPVPSSKSPCSCPLLPLH 385

Query: 1180 ANLTREGGWLPTHSPISVTLQGRYSG 1257
            AN TR+GGWLPTHSP SV LQGRYSG
Sbjct: 386  ANFTRDGGWLPTHSPTSVILQGRYSG 411


>ref|XP_855139.1| PREDICTED: similar to cAMP responsive element binding protein
           3-like 4 [Canis familiaris].
          Length = 384

 Score = 95.1 bits (235), Expect = 2e-19
 Identities = 56/128 (43%), Positives = 75/128 (58%), Gaps = 6/128 (4%)
 Frame = +1

Query: 595 KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 774
           K EE+VL+++RRKIRNK+SAQ+SRR+KK Y+  LESRV   SAQN ELQ KVQ LE  N 
Sbjct: 201 KAEERVLKKIRRKIRNKQSAQDSRRRKKEYIDGLESRVAACSAQNQELQKKVQELERHNI 260

Query: 775 XXXXXXXXXXXMVIQTANKASSSSTCIXXXXXXXXXXXXPAMYSSDTRGSPPA------E 936
                      ++ QT+NKA+ +STC+            P++  S  +G   A       
Sbjct: 261 SLVTQLRQLQTLIAQTSNKAAQTSTCVLILLFSLALIVLPSV--SPLQGLREAGSEDYQP 318

Query: 937 HGVLSRQL 960
           HGV+SR +
Sbjct: 319 HGVISRNI 326


>ref|XP_542164.2| PREDICTED: similar to cAMP responsive element binding protein 3-like
            3 [Canis familiaris].
          Length = 609

 Score = 85.5 bits (210), Expect = 1e-16
 Identities = 55/161 (34%), Positives = 85/161 (52%), Gaps = 5/161 (3%)
 Frame = +1

Query: 595  KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 774
            K EE+VL+++RRKIRNK+SAQESR+KKK Y+  LE+R+   +AQN ELQ KV  LE+QN 
Sbjct: 358  KYEERVLKKIRRKIRNKQSAQESRKKKKEYIDGLETRMSACTAQNQELQRKVLHLEKQNL 417

Query: 775  XXXXXXXXXXXMVIQTANKASSSSTCIXXXXXXXXXXXXPA----MYSSDTRGSPPAEHG 942
                       +V+Q+ +K++ + TC+            P+    + +        A   
Sbjct: 418  SLLEQLKKLQAIVVQSTSKSAQTGTCLAVLLFSFALIVLPSISPFVANKAKHAGDYAPVR 477

Query: 943  VLSRQLRALPSEDVPQRDLPALQSEVPQ-DSSTHELQAPGN 1062
            V SR L   P+  V    +P  ++  P+    T +  +PG+
Sbjct: 478  VFSRTLHNDPASRVAPDAIPGSEAPGPRPKGGTPQEGSPGS 518


>ref|XP_548490.2| PREDICTED: similar to cAMP responsive element binding protein
           3-like 2 [Canis familiaris].
          Length = 393

 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 35/59 (59%), Positives = 46/59 (77%)
 Frame = +1

Query: 595 KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQN 771
           K EE+ L+++RRKI+NK SAQESRRKKK Y+ SLE +V   S +NLEL+ KV++LE  N
Sbjct: 186 KSEEKALKKIRRKIKNKISAQESRRKKKEYMDSLEKKVESCSTENLELRKKVEVLENTN 244


>ref|XP_540756.2| PREDICTED: similar to cAMP responsive element binding protein
           3-like 1 [Canis familiaris].
          Length = 725

 Score = 67.8 bits (164), Expect = 3e-11
 Identities = 35/59 (59%), Positives = 44/59 (74%)
 Frame = +1

Query: 595 KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQN 771
           K EE+ L+RVRRKI+NK SAQESRRKKK YV  LE +V  ++++N EL  KV+ LE  N
Sbjct: 490 KAEEKALKRVRRKIKNKISAQESRRKKKEYVECLEKKVETFTSENNELWKKVETLENAN 548


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 65,263,441
Number of extensions: 1967972
Number of successful extensions: 9860
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 9762
Number of HSP's successfully gapped: 5
Length of query: 515
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 408
Effective length of database: 15,307,552
Effective search space: 6245481216
Effective search space used: 6245481216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007695
         (1547 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_038525.2| cyclic AMP-responsive element-binding protein 3...   273   3e-73
Alignment   gi|NP_084356.1| cyclic AMP-responsive element-binding protein 3...    94   3e-19
Alignment   gi|NP_663340.1| cyclic AMP-responsive element-binding protein 3...    85   2e-16
Alignment   gi|XP_919654.3| PREDICTED: cyclic AMP-responsive element-bindin...    71   2e-12
Alignment   gi|NP_848776.2| cyclic AMP-responsive element-binding protein 3...    71   2e-12
Alignment   gi|NP_036087.2| cyclic AMP-responsive element-binding protein 3...    69   1e-11

>ref|NP_038525.2| cyclic AMP-responsive element-binding protein 3 [Mus musculus].
          Length = 379

 Score =  273 bits (698), Expect = 3e-73
 Identities = 174/353 (49%), Positives = 198/353 (56%), Gaps = 12/353 (3%)
 Frame = +1

Query: 235  AAPDEALEAPLDWELPLSE----ALSDWDVEDFLSCLSSPPASLTDFSHSDPYLVHHDHT 402
            AA +  ++APLD EL  SE     LSDW+VED LS L SP  S  D   S    + HDH 
Sbjct: 31   AATEPDVKAPLDLELSPSENSVQELSDWEVEDLLSSLLSPSVS-RDVLGSSSSSILHDHN 89

Query: 403  YSLSQEYVSIDLDNEDYEKEGAQMTSLR-VEAPAEQEIGXXXXXXXXXXXXXXXXXXXXX 579
            YSL QE+VSIDLD E +EKEG  +T L   E  AEQE+                      
Sbjct: 90   YSLPQEHVSIDLDTESFEKEGFHVTPLPGEERAAEQEMSRLILTEEEKKLLEKEGLTLPS 149

Query: 580  XXXXXKMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLL 759
                 K+EEQVL+RVRRKIRNK++AQESR+KKKVYV  LESRVLKY+AQN ELQNKVQ L
Sbjct: 150  TLPLTKVEEQVLKRVRRKIRNKRAAQESRKKKKVYVVGLESRVLKYTAQNRELQNKVQRL 209

Query: 760  EEQNXXXXXXXXXXXXMVIQTANKASSSSTCIXXXXXXXXXXXXPAMYSSDTRGSPPAEH 939
            EEQN            MVI+ ANK SS STC+            PAMYSSD RGS PAE+
Sbjct: 210  EEQNLSLLDQLRKLQAMVIEIANKTSSGSTCVLVLVFSFCLLLVPAMYSSDARGSVPAEY 269

Query: 940  GVLSRQLRALPSEDVPQRDLPALQSEVPQ-------DSSTHELQAPGNSCCLFHHMAWAP 1098
             VL R+LRALPSED  Q    AL SE+P        DSS H      N  C+ +H   AP
Sbjct: 270  VVLHRKLRALPSEDDHQPKPSALSSELPMDSTHQSLDSSEHMFLVSSNFSCVLYH---AP 326

Query: 1099 GAESPMKLPLPDRFSRSSSPGPIFPLHANLTREGGWLPTHSPISVTLQGRYSG 1257
             AE P+  PL D  S          L ANL+   GW P HSP  V  QGRYSG
Sbjct: 327  QAEQPLHWPLWDLSSEMLFSDSNLLLQANLSESEGWQPNHSPSLVIFQGRYSG 379


>ref|NP_084356.1| cyclic AMP-responsive element-binding protein 3-like protein 4 [Mus
            musculus].
          Length = 370

 Score = 94.0 bits (232), Expect = 3e-19
 Identities = 60/157 (38%), Positives = 89/157 (56%), Gaps = 8/157 (5%)
 Frame = +1

Query: 595  KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 774
            K EE++L+++RRKIRNK+SAQ+SRR+KK Y+  LESRV   S QN +LQ KVQ LE QN 
Sbjct: 188  KAEERILKKIRRKIRNKQSAQDSRRRKKEYLDGLESRVAACSEQNQKLQRKVQELERQNI 247

Query: 775  XXXXXXXXXXXMVIQTANKASSSSTCIXXXXXXXXXXXXPAMY----SSDTRGSPPAEHG 942
                       +  QT+++A+ +STC+            P+       S+ R      HG
Sbjct: 248  FLMEQVRQLQKLTAQTSSRAAQTSTCVLILLFSLALIILPSFSPFQGQSEARPEDYQLHG 307

Query: 943  VLSRQLRALPSEDVPQR-DLPALQS---EVPQDSSTH 1041
            V+SR +  L  E+V +  + P L+S   E+P+  +T+
Sbjct: 308  VISRNI--LTHENVTENLESPVLKSKLEELPEAPTTN 342


>ref|NP_663340.1| cyclic AMP-responsive element-binding protein 3-like protein 3 [Mus
           musculus].
          Length = 479

 Score = 84.7 bits (208), Expect = 2e-16
 Identities = 43/87 (49%), Positives = 60/87 (68%)
 Frame = +1

Query: 595 KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 774
           K EE+VL+++RRKIRNK+SAQESR+KKK Y+  LE+R+   +AQN ELQ KV  LE+QN 
Sbjct: 234 KYEERVLKKIRRKIRNKQSAQESRKKKKEYIDGLENRMSACTAQNQELQRKVLHLEKQNL 293

Query: 775 XXXXXXXXXXXMVIQTANKASSSSTCI 855
                      +V+Q+ +K + + TCI
Sbjct: 294 SLLEQLKHLQALVVQSTSKPAHAGTCI 320


>ref|XP_919654.3| PREDICTED: cyclic AMP-responsive element-binding protein 3-like
           protein 2-like [Mus musculus].
          Length = 460

 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 35/59 (59%), Positives = 46/59 (77%)
 Frame = +1

Query: 595 KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQN 771
           K EE+ L+++RRKI+NK SAQESRRKKK Y+ SLE +V   S +NLEL+ KV++LE  N
Sbjct: 228 KSEEKALKKIRRKIKNKISAQESRRKKKEYMDSLEKKVESCSTENLELRKKVEVLENTN 286


>ref|NP_848776.2| cyclic AMP-responsive element-binding protein 3-like protein 2 [Mus
           musculus].
          Length = 521

 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 35/59 (59%), Positives = 46/59 (77%)
 Frame = +1

Query: 595 KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQN 771
           K EE+ L+++RRKI+NK SAQESRRKKK Y+ SLE +V   S +NLEL+ KV++LE  N
Sbjct: 289 KSEEKALKKIRRKIKNKISAQESRRKKKEYMDSLEKKVESCSTENLELRKKVEVLENTN 347


>ref|NP_036087.2| cyclic AMP-responsive element-binding protein 3-like protein 1 [Mus
           musculus].
          Length = 520

 Score = 68.9 bits (167), Expect = 1e-11
 Identities = 36/59 (61%), Positives = 44/59 (74%)
 Frame = +1

Query: 595 KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQN 771
           K EE+ L+RVRRKI+NK SAQESRRKKK YV  LE +V  Y+++N EL  KV+ LE  N
Sbjct: 285 KAEEKALKRVRRKIKNKISAQESRRKKKEYVECLEKKVETYTSENNELWKKVETLETAN 343


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 54,028,416
Number of extensions: 1600124
Number of successful extensions: 7760
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 7687
Number of HSP's successfully gapped: 6
Length of query: 515
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 409
Effective length of database: 12,433,743
Effective search space: 5085400887
Effective search space used: 5085400887
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007695
         (1547 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001116692.1| cyclic AMP-responsive element-binding protei...   569   e-162
Alignment   gi|XP_003353616.1| PREDICTED: hypothetical protein LOC100627545...   130   3e-30
Alignment   gi|NP_001116574.1| cyclic AMP-responsive element-binding protei...    95   9e-20
Alignment   gi|XP_003123109.1| PREDICTED: cyclic AMP-responsive element-bin...    86   6e-17
Alignment   gi|XP_003123108.1| PREDICTED: cyclic AMP-responsive element-bin...    86   6e-17
Alignment   gi|XP_003134683.1| PREDICTED: cyclic AMP-responsive element-bin...    71   1e-12
Alignment   gi|XP_003122877.1| PREDICTED: cyclic AMP-responsive element-bin...    68   2e-11
Alignment   gi|XP_003353933.1| PREDICTED: cyclic AMP-responsive element-bin...    68   2e-11

>ref|NP_001116692.1| cyclic AMP-responsive element-binding protein 3 [Sus scrofa].
          Length = 365

 Score =  569 bits (1466), Expect = e-162
 Identities = 291/341 (85%), Positives = 291/341 (85%)
 Frame = +1

Query: 235  AAPDEALEAPLDWELPLSEALSDWDVEDFLSCLSSPPASLTDFSHSDPYLVHHDHTYSLS 414
            AAPDEALEAPLDWELPLSEALSDWDVEDFLSCLSSPPASLTDFSHSDPYLVHHDHTYSLS
Sbjct: 25   AAPDEALEAPLDWELPLSEALSDWDVEDFLSCLSSPPASLTDFSHSDPYLVHHDHTYSLS 84

Query: 415  QEYVSIDLDNEDYEKEGAQMTSLRVEAPAEQEIGXXXXXXXXXXXXXXXXXXXXXXXXXX 594
            QEYVSIDLDNEDYEKEGAQMTSLRVEAPAEQEIG                          
Sbjct: 85   QEYVSIDLDNEDYEKEGAQMTSLRVEAPAEQEIGELVLTEEEKRLLEKEGLTLPGTLPLT 144

Query: 595  KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 774
            KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQN 
Sbjct: 145  KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNL 204

Query: 775  XXXXXXXXXXXMVIQTANKASSSSTCIXXXXXXXXXXXXPAMYSSDTRGSPPAEHGVLSR 954
                       MVIQTANKASSSSTCI            PAMYSSDTRGSPPAEHGVLSR
Sbjct: 205  SLLDQLRRLQSMVIQTANKASSSSTCILVLLFSFCLLFVPAMYSSDTRGSPPAEHGVLSR 264

Query: 955  QLRALPSEDVPQRDLPALQSEVPQDSSTHELQAPGNSCCLFHHMAWAPGAESPMKLPLPD 1134
            QLRALPSEDVPQRDLPALQSEVPQDSSTHELQAPGNSCCLFHHMAWAPGAESPMKLPLPD
Sbjct: 265  QLRALPSEDVPQRDLPALQSEVPQDSSTHELQAPGNSCCLFHHMAWAPGAESPMKLPLPD 324

Query: 1135 RFSRSSSPGPIFPLHANLTREGGWLPTHSPISVTLQGRYSG 1257
            RFSRSSSPGPIFPLHANLTREGGWLPTHSPISVTLQGRYSG
Sbjct: 325  RFSRSSSPGPIFPLHANLTREGGWLPTHSPISVTLQGRYSG 365


>ref|XP_003353616.1| PREDICTED: hypothetical protein LOC100627545 [Sus scrofa].
          Length = 59

 Score =  130 bits (326), Expect = 3e-30
 Identities = 59/59 (100%), Positives = 59/59 (100%)
 Frame = +2

Query: 938  MECCPASFVPSPARTFPSGTCLHCSQRYHRTAQPTSSRLLATLAACSTTWLGLLGQNRP 1114
            MECCPASFVPSPARTFPSGTCLHCSQRYHRTAQPTSSRLLATLAACSTTWLGLLGQNRP
Sbjct: 1    MECCPASFVPSPARTFPSGTCLHCSQRYHRTAQPTSSRLLATLAACSTTWLGLLGQNRP 59


>ref|NP_001116574.1| cyclic AMP-responsive element-binding protein 3-like protein 4 [Sus
           scrofa].
          Length = 395

 Score = 95.1 bits (235), Expect = 9e-20
 Identities = 48/87 (55%), Positives = 62/87 (71%)
 Frame = +1

Query: 595 KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 774
           K EE+VL++VRRKIRNK+SAQ+SRR+KK Y+  LESRV   SAQN ELQ KVQ LE  N 
Sbjct: 212 KAEERVLKKVRRKIRNKQSAQDSRRRKKEYIDGLESRVAACSAQNQELQKKVQELERHNL 271

Query: 775 XXXXXXXXXXXMVIQTANKASSSSTCI 855
                      +++QT+NKA+ +STC+
Sbjct: 272 SLVTQLRQLQMLIVQTSNKAAQTSTCV 298


>ref|XP_003123109.1| PREDICTED: cyclic AMP-responsive element-binding protein 3-like
            protein 3-like isoform 2 [Sus scrofa].
          Length = 450

 Score = 85.9 bits (211), Expect = 6e-17
 Identities = 56/161 (34%), Positives = 89/161 (55%), Gaps = 5/161 (3%)
 Frame = +1

Query: 595  KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 774
            K EE+VL+++RRKIRNK+SAQESR+KKK Y+  LE+R+   +AQN ELQ KV  LE+QN 
Sbjct: 227  KYEERVLKKIRRKIRNKQSAQESRKKKKEYIDGLETRMSACTAQNQELQRKVLHLEKQNL 286

Query: 775  XXXXXXXXXXXMVIQTANKASSSSTCIXXXXXXXXXXXXPAM--YSSDTRGSPP--AEHG 942
                       +V+Q+ +K++ + TCI            P++  ++S+   +P       
Sbjct: 287  SLLEQLKKLQAIVVQSTSKSAQTGTCIAVLLFSFALIVLPSISPFASNKTENPGDFTPVR 346

Query: 943  VLSRQLRALPSEDVPQRDLPALQSEVPQ-DSSTHELQAPGN 1062
            V SR L    +  V     P  ++  P+ ++ T +  +PG+
Sbjct: 347  VFSRTLHNDAASRVAPNTAPGSEAPGPRPEAGTLQEGSPGS 387


>ref|XP_003123108.1| PREDICTED: cyclic AMP-responsive element-binding protein 3-like
            protein 3-like isoform 1 [Sus scrofa].
          Length = 444

 Score = 85.9 bits (211), Expect = 6e-17
 Identities = 56/161 (34%), Positives = 89/161 (55%), Gaps = 5/161 (3%)
 Frame = +1

Query: 595  KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 774
            K EE+VL+++RRKIRNK+SAQESR+KKK Y+  LE+R+   +AQN ELQ KV  LE+QN 
Sbjct: 221  KYEERVLKKIRRKIRNKQSAQESRKKKKEYIDGLETRMSACTAQNQELQRKVLHLEKQNL 280

Query: 775  XXXXXXXXXXXMVIQTANKASSSSTCIXXXXXXXXXXXXPAM--YSSDTRGSPP--AEHG 942
                       +V+Q+ +K++ + TCI            P++  ++S+   +P       
Sbjct: 281  SLLEQLKKLQAIVVQSTSKSAQTGTCIAVLLFSFALIVLPSISPFASNKTENPGDFTPVR 340

Query: 943  VLSRQLRALPSEDVPQRDLPALQSEVPQ-DSSTHELQAPGN 1062
            V SR L    +  V     P  ++  P+ ++ T +  +PG+
Sbjct: 341  VFSRTLHNDAASRVAPNTAPGSEAPGPRPEAGTLQEGSPGS 381


>ref|XP_003134683.1| PREDICTED: cyclic AMP-responsive element-binding protein 3-like
           protein 2 [Sus scrofa].
          Length = 520

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 35/59 (59%), Positives = 46/59 (77%)
 Frame = +1

Query: 595 KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQN 771
           K EE+ L+++RRKI+NK SAQESRRKKK Y+ SLE +V   S +NLEL+ KV++LE  N
Sbjct: 289 KSEEKALKKIRRKIKNKISAQESRRKKKEYMDSLEKKVESCSTENLELRKKVEVLENTN 347


>ref|XP_003122877.1| PREDICTED: cyclic AMP-responsive element-binding protein 3-like
           protein 1 [Sus scrofa].
          Length = 520

 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 35/59 (59%), Positives = 44/59 (74%)
 Frame = +1

Query: 595 KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQN 771
           K EE+ L+RVRRKI+NK SAQESRRKKK YV  LE +V  ++++N EL  KV+ LE  N
Sbjct: 285 KAEEKALKRVRRKIKNKISAQESRRKKKEYVECLEKKVETFTSENNELWKKVETLENAN 343


>ref|XP_003353933.1| PREDICTED: cyclic AMP-responsive element-binding protein 3-like
           protein 1-like [Sus scrofa].
          Length = 446

 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 35/59 (59%), Positives = 44/59 (74%)
 Frame = +1

Query: 595 KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQN 771
           K EE+ L+RVRRKI+NK SAQESRRKKK YV  LE +V  ++++N EL  KV+ LE  N
Sbjct: 273 KAEEKALKRVRRKIKNKISAQESRRKKKEYVECLEKKVETFTSENNELWKKVETLENAN 331


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 40,513,256
Number of extensions: 1237523
Number of successful extensions: 6217
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 6189
Number of HSP's successfully gapped: 8
Length of query: 515
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 412
Effective length of database: 8,779,541
Effective search space: 3617170892
Effective search space used: 3617170892
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007695
         (1547 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_006359.3| cyclic AMP-responsive element-binding protein 3...   383   e-106
Alignment   gi|NP_570968.1| cyclic AMP-responsive element-binding protein 3...    98   2e-20
Alignment   gi|NP_115996.1| cyclic AMP-responsive element-binding protein 3...    87   5e-17
Alignment   gi|NP_919047.2| cyclic AMP-responsive element-binding protein 3...    71   2e-12
Alignment   gi|NP_443086.1| cyclic AMP-responsive element-binding protein 3...    68   3e-11

>ref|NP_006359.3| cyclic AMP-responsive element-binding protein 3 [Homo sapiens].
          Length = 371

 Score =  383 bits (984), Expect = e-106
 Identities = 212/348 (60%), Positives = 236/348 (67%), Gaps = 8/348 (2%)
 Frame = +1

Query: 238  APDEALEAPLDWELPLSEALSDWDVEDFLSCLSSPPASLTDFSHSDPYLVHHDHTYSLSQ 417
            APDEA+ APLDW LPLSE  SDW+V+D L  L SPPASL   S S+P LVHHDHTYSL +
Sbjct: 26   APDEAVRAPLDWALPLSEVPSDWEVDDLLCSLLSPPASLNILSSSNPCLVHHDHTYSLPR 85

Query: 418  EYVSIDLDNEDYEKEGAQMTSLRVEAPAEQEIGXXXXXXXXXXXXXXXXXXXXXXXXXXK 597
            E VS+DL++E   KEG QMT   +E  AEQEI                           K
Sbjct: 86   ETVSMDLESESCRKEGTQMTPQHMEELAEQEIARLVLTDEEKSLLEKEGLILPETLPLTK 145

Query: 598  MEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNXX 777
             EEQ+L+RVRRKIRNK+SAQESRRKKKVYVG LESRVLKY+AQN+ELQNKVQLLEEQN  
Sbjct: 146  TEEQILKRVRRKIRNKRSAQESRRKKKVYVGGLESRVLKYTAQNMELQNKVQLLEEQNLS 205

Query: 778  XXXXXXXXXXMVIQTANKASSSSTCIXXXXXXXXXXXXPAMYSSDTRGSPPAEHGVLSRQ 957
                      MVI+ +NK SSSSTCI            PAMYSSDTRGS PAEHGVLSRQ
Sbjct: 206  LLDQLRKLQAMVIEISNKTSSSSTCILVLLVSFCLLLVPAMYSSDTRGSLPAEHGVLSRQ 265

Query: 958  LRALPSEDVPQRDLPALQSEVPQDSSTHE--------LQAPGNSCCLFHHMAWAPGAESP 1113
            LRALPSED  Q +LPALQSEVP+D STH+        LQAPGN+ CL H+M  AP AE P
Sbjct: 266  LRALPSEDPYQLELPALQSEVPKD-STHQWLDGSDCVLQAPGNTSCLLHYMPQAPSAEPP 324

Query: 1114 MKLPLPDRFSRSSSPGPIFPLHANLTREGGWLPTHSPISVTLQGRYSG 1257
            ++ P PD FS     GPI PL ANLTR+GGWLPT SP SV LQ RYSG
Sbjct: 325  LEWPFPDLFSEPLCRGPILPLQANLTRKGGWLPTGSP-SVILQDRYSG 371


>ref|NP_570968.1| cyclic AMP-responsive element-binding protein 3-like protein 4
           [Homo sapiens].
          Length = 395

 Score = 98.2 bits (243), Expect = 2e-20
 Identities = 59/136 (43%), Positives = 78/136 (57%), Gaps = 4/136 (2%)
 Frame = +1

Query: 595 KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 774
           K EE+VL++VRRKIRNK+SAQ+SRR+KK Y+  LESRV   SAQN ELQ KVQ LE  N 
Sbjct: 212 KAEERVLKKVRRKIRNKQSAQDSRRRKKEYIDGLESRVAACSAQNQELQKKVQELERHNI 271

Query: 775 XXXXXXXXXXXMVIQTANKASSSSTCIXXXXXXXXXXXXPAMYSSDTRGSPPAE----HG 942
                      ++ QT+NKA+ +STC+            P+     +R    +E    HG
Sbjct: 272 SLVAQLRQLQTLIAQTSNKAAQTSTCVLILLFSLALIILPSFSPFQSRPEAGSEDYQPHG 331

Query: 943 VLSRQLRALPSEDVPQ 990
           V SR +  L  +DV +
Sbjct: 332 VTSRNI--LTHKDVTE 345


>ref|NP_115996.1| cyclic AMP-responsive element-binding protein 3-like protein 3 [Homo
            sapiens].
          Length = 461

 Score = 86.7 bits (213), Expect = 5e-17
 Identities = 56/161 (34%), Positives = 89/161 (55%), Gaps = 5/161 (3%)
 Frame = +1

Query: 595  KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 774
            K EE+VL+++RRKIRNK+SAQESR+KKK Y+  LE+R+   +AQN ELQ KV  LE+QN 
Sbjct: 238  KYEERVLKKIRRKIRNKQSAQESRKKKKEYIDGLETRMSACTAQNQELQRKVLHLEKQNL 297

Query: 775  XXXXXXXXXXXMVIQTANKASSSSTCIXXXXXXXXXXXXPAM--YSSDTRGSPP--AEHG 942
                       +V+Q+ +K++ + TC+            P++  +  +   SP   A   
Sbjct: 298  SLLEQLKKLQAIVVQSTSKSAQTGTCVAVLLLSFALIILPSISPFGPNKTESPGDFAPVR 357

Query: 943  VLSRQLRALPSEDVPQRDLPALQSEVPQ-DSSTHELQAPGN 1062
            V SR L    +  V    +P  ++  P+ ++ T   ++PG+
Sbjct: 358  VFSRTLHNDAASRVAADAVPGSEAPGPRPEADTTREESPGS 398


>ref|NP_919047.2| cyclic AMP-responsive element-binding protein 3-like protein 2
           [Homo sapiens].
          Length = 520

 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 35/59 (59%), Positives = 46/59 (77%)
 Frame = +1

Query: 595 KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQN 771
           K EE+ L+++RRKI+NK SAQESRRKKK Y+ SLE +V   S +NLEL+ KV++LE  N
Sbjct: 289 KSEEKALKKIRRKIKNKISAQESRRKKKEYMDSLEKKVESCSTENLELRKKVEVLENTN 347


>ref|NP_443086.1| cyclic AMP-responsive element-binding protein 3-like protein 1
           [Homo sapiens].
          Length = 519

 Score = 67.8 bits (164), Expect = 3e-11
 Identities = 35/59 (59%), Positives = 44/59 (74%)
 Frame = +1

Query: 595 KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQN 771
           K EE+ L+RVRRKI+NK SAQESRRKKK YV  LE +V  ++++N EL  KV+ LE  N
Sbjct: 285 KAEEKALKRVRRKIKNKISAQESRRKKKEYVECLEKKVETFTSENNELWKKVETLENAN 343


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 64,023,074
Number of extensions: 1924854
Number of successful extensions: 9737
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 9674
Number of HSP's successfully gapped: 5
Length of query: 515
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 408
Effective length of database: 14,770,016
Effective search space: 6026166528
Effective search space used: 6026166528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007695
         (1547 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr01                                                        1152   0.0  

>Sscrofa_Chr01 
||          Length = 315321322

 Score = 1152 bits (581), Expect = 0.0
 Identities = 587/589 (99%)
 Strand = Plus / Plus

                                                                             
Query: 942       agtgttgtcccgccagcttcgtgccctccccagcgaggacgttccccagcgggacctgcc 1001
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264180972 agtgttgtcccgccagcttcgtgccctccccagcgaggacgttccccagcgggacctgcc 264181031

                                                                             
Query: 1002      tgcactgcagtcagaggtaccacaggacagctcaacccacgagctccaggctcctggcaa 1061
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264181032 tgcactgcagtcagaggtaccacaggacagctcaacccacgagctccaggctcctggcaa 264181091

                                                                             
Query: 1062      ctcttgctgcctgttccaccacatggcttgggctcctggggcagaatcgcccatgaagct 1121
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264181092 ctcttgctgcctgttccaccacatggcttgggctcctggggcagaatcgcccatgaagct 264181151

                                                                             
Query: 1122      gccactgcccgaccgcttctcaaggtcttctagcccaggtcccatcttccccctgcatgc 1181
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264181152 gccactgcccgaccgcttctcaaggtcttctagcccaggtcccatcttccccctgcatgc 264181211

                                                                             
Query: 1182      aaatctcacaagagagggaggatggctccctacccacagccccatatctgttaccttgca 1241
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264181212 aaatctcacaagagagggaggatggctccctacccacagccccatatctgttaccttgca 264181271

                                                                             
Query: 1242      gggcaggtactcaggctagatgtgagaatgcagggggcctcagccagagcctggtgcccc 1301
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264181272 gggcaggtactcaggctagatgtgagaatgcagggggcctcagccagagcctggtgcccc 264181331

                                                                             
Query: 1302      cagtctgtgttcaaaggagaaggaatgggagagggtgaacctcaggtcctgtcccctgtc 1361
                 |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 264181332 cagtctgtgttcaaaggaaaaggaatgggagagggtgagcctcaggtcctgtcccctgtc 264181391

                                                                             
Query: 1362      aggaagcctgagggcacaaacacaccacacttactggctttctggggttttatttgcacc 1421
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264181392 aggaagcctgagggcacaaacacaccacacttactggctttctggggttttatttgcacc 264181451

                                                                             
Query: 1422      catgtatgtctgttgttccattaaggggcctgggagagtccactgacttccttgaacatt 1481
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264181452 catgtatgtctgttgttccattaaggggcctgggagagtccactgacttccttgaacatt 264181511

                                                                  
Query: 1482      tcatgcaatgaggggatggggtgaagaaagaaataaataagtgattctg 1530
                 |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264181512 tcatgcaatgaggggatggggtgaagaaagaaataaataagtgattctg 264181560



 Score =  563 bits (284), Expect = e-157
 Identities = 290/292 (99%)
 Strand = Plus / Plus

                                                                             
Query: 1         gggtcgggtttgcgagccacctccggcatccaggaggaaaaccccgcttgcggagcccat 60
                 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264176139 gggtcgggtttgtgagccacctccggcatccaggaggaaaaccccgcttgcggagcccat 264176198

                                                                             
Query: 61        aggtgtggcccactgacgatcggtgggagtcgtgcgtggggttgggagttgactccgggt 120
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264176199 aggtgtggcccactgacgatcggtgggagtcgtgcgtggggttgggagttgactccgggt 264176258

                                                                             
Query: 121       gtacttctgtgtttctgctcatcctttccgtagatgtctcatatggagctggggttggac 180
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264176259 gtacttctgtgtttctgctcatcctttccgtagatgtctcatatggagctggggttggac 264176318

                                                                             
Query: 181       tcgggtgacgatgacttgctgggcttcctgttagaggaaagcggaggtctgggggcggcg 240
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264176319 tcgggtgacgatgacttgctgggcttcctgttagaggaaagcggaggtctgggggcggcg 264176378

                                                                     
Query: 241       ccggacgaagccttggaggcgcccctggattgggagctaccactttccgagg 292
                 | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264176379 cgggacgaagccttggaggcgcccctggattgggagctaccactttccgagg 264176430



 Score =  297 bits (150), Expect = 9e-78
 Identities = 150/150 (100%)
 Strand = Plus / Plus

                                                                             
Query: 290       aggcattgagcgattgggacgtagaggatttcctgagctgcctgtcgagtcccccagcat 349
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264176533 aggcattgagcgattgggacgtagaggatttcctgagctgcctgtcgagtcccccagcat 264176592

                                                                             
Query: 350       cgttgaccgattttagccactctgacccctatcttgtccaccatgatcacacctattccc 409
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264176593 cgttgaccgattttagccactctgacccctatcttgtccaccatgatcacacctattccc 264176652

                                               
Query: 410       tgtcacaggagtatgtctccatagatctag 439
                 ||||||||||||||||||||||||||||||
Sbjct: 264176653 tgtcacaggagtatgtctccatagatctag 264176682



 Score =  194 bits (98), Expect = 1e-46
 Identities = 107/110 (97%)
 Strand = Plus / Plus

                                                                             
Query: 596       agatggaggaacaagttctgagacgagtgcgaaggaagattcgaaacaaaaagtctgctc 655
                 ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||
Sbjct: 264179557 agatggaggaacaagttctgcttcgagtgcgaaggaagattcgaaacaaaaagtctgctc 264179616

                                                                   
Query: 656       aagagagccgcaggaagaagaaggtgtatgtggggagtttagagagcagg 705
                 ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264179617 aagagagccgcaggaagaagaaggtgtatgtggggagtttagagagcagg 264179666



 Score =  184 bits (93), Expect = 1e-43
 Identities = 93/93 (100%)
 Strand = Plus / Plus

                                                                             
Query: 505       caggagattggtgagctgatactgacggaggaggagaagaggcttttggagaaggagggg 564
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264176940 caggagattggtgagctgatactgacggaggaggagaagaggcttttggagaaggagggg 264176999

                                                  
Query: 565       cttactctgcccgggacacttcctctcactaag 597
                 |||||||||||||||||||||||||||||||||
Sbjct: 264177000 cttactctgcccgggacacttcctctcactaag 264177032



 Score =  172 bits (87), Expect = 4e-40
 Identities = 87/87 (100%)
 Strand = Plus / Plus

                                                                             
Query: 774       gtcccttttggatcagttgaggaggctgcagtccatggtgattcagacggcaaacaaagc 833
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264180623 gtcccttttggatcagttgaggaggctgcagtccatggtgattcagacggcaaacaaagc 264180682

                                            
Query: 834       cagcagcagcagcacctgcatcttggt 860
                 |||||||||||||||||||||||||||
Sbjct: 264180683 cagcagcagcagcacctgcatcttggt 264180709



 Score =  170 bits (86), Expect = 1e-39
 Identities = 86/86 (100%)
 Strand = Plus / Plus

                                                                             
Query: 858       ggtcctgctcttctccttctgtctcctcttcgtacctgccatgtactcctcggacacaag 917
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264180811 ggtcctgctcttctccttctgtctcctcttcgtacctgccatgtactcctcggacacaag 264180870

                                           
Query: 918       ggggagcccgccagccgagcatggag 943
                 ||||||||||||||||||||||||||
Sbjct: 264180871 ggggagcccgccagccgagcatggag 264180896



 Score =  147 bits (74), Expect = 2e-32
 Identities = 74/74 (100%)
 Strand = Plus / Plus

                                                                             
Query: 702       cagggtcctgaaatactcggcccagaatctggagctacagaacaaagtacagctcctgga 761
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264179776 cagggtcctgaaatactcggcccagaatctggagctacagaacaaagtacagctcctgga 264179835

                               
Query: 762       ggagcagaatctgt 775
                 ||||||||||||||
Sbjct: 264179836 ggagcagaatctgt 264179849



 Score =  133 bits (67), Expect = 3e-28
 Identities = 70/71 (98%)
 Strand = Plus / Plus

                                                                             
Query: 438       agataatgaggattatgagaaggaaggggcccaaatgacttcactgcgtgtggaggcgcc 497
                 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 264176757 agataatgaggattatgagaaggaaggggcccaaatgacttccctgcgtgtggaggcgcc 264176816

                            
Query: 498       cgcagagcagg 508
                 |||||||||||
Sbjct: 264176817 cgcagagcagg 264176827


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 45,106,319
Number of extensions: 363
Number of successful extensions: 363
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 363
Number of HSP's successfully gapped: 9
Length of query: 1547
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1526
Effective length of database: 2,808,413,156
Effective search space: 4285638476056
Effective search space used: 4285638476056
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)