Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007704
(1029 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098911.1| abhydrolase domain-containing protein 14B [B... 394 e-110
Alignment gi|XP_002697113.1| PREDICTED: abhydrolase domain containing 14A... 155 4e-38
Alignment gi|XP_593087.3| PREDICTED: abhydrolase domain containing 14A is... 155 4e-38
>ref|NP_001098911.1| abhydrolase domain-containing protein 14B [Bos taurus].
Length = 210
Score = 394 bits (1012), Expect = e-110
Identities = 197/210 (93%), Positives = 201/210 (95%), Gaps = 1/210 (0%)
Frame = +2
Query: 92 MAGVEQHEGTIQVQGQSLFFREARPGSGQAARFSVLLLHGIRFSSETWQNLGTLHRLAEA 271
MAGVEQ EG IQVQGQSLFFREA PG GQAARFSVLLLHGIRFSSETWQNLGTLHRLA+A
Sbjct: 1 MAGVEQREGAIQVQGQSLFFREALPGGGQAARFSVLLLHGIRFSSETWQNLGTLHRLAQA 60
Query: 272 GYRAVAIDLPGLGRSKEA-TPAPIGELVPSSFLAAVVDALDLGPPVVVSPSLSGMYSLLF 448
GYRAVAIDLPGLGRSKEA PAPIGELVPSSFLAAVVDALDLGPPVV+SPSLSGMYSL F
Sbjct: 61 GYRAVAIDLPGLGRSKEAKAPAPIGELVPSSFLAAVVDALDLGPPVVISPSLSGMYSLPF 120
Query: 449 LTAPDSQLRGYVPVAPICTDKINAADYARVKTSVLIVYGDQDPMGQTSFEHLKQLPNHRV 628
LTAP SQLRGYVPVAPICTDKINAADYARVK SVLIVYGDQDPMGQTSFEHLKQLPNHRV
Sbjct: 121 LTAPGSQLRGYVPVAPICTDKINAADYARVKASVLIVYGDQDPMGQTSFEHLKQLPNHRV 180
Query: 629 LVMEGAGHPCYLDKPEQWHTGLLDFLKGLA 718
LVMEGAGHPCYLDKPE+WHTGLLDFL+GLA
Sbjct: 181 LVMEGAGHPCYLDKPEEWHTGLLDFLQGLA 210
>ref|XP_002697113.1| PREDICTED: abhydrolase domain containing 14A [Bos taurus].
Length = 307
Score = 155 bits (393), Expect = 4e-38
Identities = 88/192 (45%), Positives = 114/192 (59%), Gaps = 1/192 (0%)
Frame = +2
Query: 143 LFFREARPGSGQAARFSVLLLHGIRFSSETWQNLGTLHRLAEAGYRAVAIDLPGLGRSKE 322
+F+RE P +A R V+LLHG FSS TW+ LGTL LA+ GYRAVA+DLPG G S
Sbjct: 117 IFYREVLPFH-RAHRVDVVLLHGKAFSSRTWEQLGTLQLLAQRGYRAVALDLPGFGNSAP 175
Query: 323 ATPAPIGELVPSSFLAAVVDALDLGPPVVVSPSLSGMYSLLFLTAPDSQLRGYVPVAPIC 502
+ A E + L V+ L++ V+VSPSLSG Y+L FL QLRG+VP+AP
Sbjct: 176 SKEAST-EAGRAELLERVLQDLNVQNAVLVSPSLSGRYALPFLMRGHHQLRGFVPIAPAS 234
Query: 503 TDKINAADYARVKTSVLIVYGDQD-PMGQTSFEHLKQLPNHRVLVMEGAGHPCYLDKPEQ 679
T + VKT LI+YG+ D + + S L+ LPNH + + AGH CYL KP+
Sbjct: 235 TQNYTQEQFQAVKTPTLILYGELDRTLARESLRQLRHLPNHATVKLRNAGHACYLHKPQD 294
Query: 680 WHTGLLDFLKGL 715
+H LL FL L
Sbjct: 295 FHLELLAFLDHL 306
>ref|XP_593087.3| PREDICTED: abhydrolase domain containing 14A isoform 1 [Bos
taurus].
Length = 309
Score = 155 bits (393), Expect = 4e-38
Identities = 88/192 (45%), Positives = 114/192 (59%), Gaps = 1/192 (0%)
Frame = +2
Query: 143 LFFREARPGSGQAARFSVLLLHGIRFSSETWQNLGTLHRLAEAGYRAVAIDLPGLGRSKE 322
+F+RE P +A R V+LLHG FSS TW+ LGTL LA+ GYRAVA+DLPG G S
Sbjct: 119 IFYREVLPFH-RAHRVDVVLLHGKAFSSRTWEQLGTLQLLAQRGYRAVALDLPGFGNSAP 177
Query: 323 ATPAPIGELVPSSFLAAVVDALDLGPPVVVSPSLSGMYSLLFLTAPDSQLRGYVPVAPIC 502
+ A E + L V+ L++ V+VSPSLSG Y+L FL QLRG+VP+AP
Sbjct: 178 SKEAST-EAGRAELLERVLQDLNVQNAVLVSPSLSGRYALPFLMRGHHQLRGFVPIAPAS 236
Query: 503 TDKINAADYARVKTSVLIVYGDQD-PMGQTSFEHLKQLPNHRVLVMEGAGHPCYLDKPEQ 679
T + VKT LI+YG+ D + + S L+ LPNH + + AGH CYL KP+
Sbjct: 237 TQNYTQEQFQAVKTPTLILYGELDRTLARESLRQLRHLPNHATVKLRNAGHACYLHKPQD 296
Query: 680 WHTGLLDFLKGL 715
+H LL FL L
Sbjct: 297 FHLELLAFLDHL 308
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,110,123
Number of extensions: 1695623
Number of successful extensions: 10026
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9746
Number of HSP's successfully gapped: 3
Length of query: 343
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 240
Effective length of database: 14,273,310
Effective search space: 3425594400
Effective search space used: 3425594400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007704
(1029 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_541860.2| PREDICTED: similar to Y55F3AM.10 [Canis familia... 390 e-111
Alignment gi|XP_541859.2| PREDICTED: similar to abhydrolase domain contai... 153 2e-37
>ref|XP_541860.2| PREDICTED: similar to Y55F3AM.10 [Canis familiaris].
Length = 300
Score = 390 bits (1002), Expect(2) = e-111
Identities = 196/216 (90%), Positives = 201/216 (93%), Gaps = 1/216 (0%)
Frame = +2
Query: 74 TSPAAGMAGVEQHEGTIQVQGQSLFFREARPGSGQAARFSVLLLHGIRFSSETWQNLGTL 253
T AAGMAGVEQ EGTIQVQGQSLFFRE RPG GQAA FSVLLLHGIRFSSETWQ LGTL
Sbjct: 85 TRTAAGMAGVEQQEGTIQVQGQSLFFREGRPGGGQAASFSVLLLHGIRFSSETWQKLGTL 144
Query: 254 HRLAEAGYRAVAIDLPGLGRSKEAT-PAPIGELVPSSFLAAVVDALDLGPPVVVSPSLSG 430
H+LA+AGYRAVAIDLPGLGRSKEA PAPIGELVPSSFLAAVVDALDLG PVV+SPSLSG
Sbjct: 145 HKLAQAGYRAVAIDLPGLGRSKEAVAPAPIGELVPSSFLAAVVDALDLGSPVVISPSLSG 204
Query: 431 MYSLLFLTAPDSQLRGYVPVAPICTDKINAADYARVKTSVLIVYGDQDPMGQTSFEHLKQ 610
MYSL FLTAP SQLRGYVPVAPICTDKINAADYA VKTS LIVYGDQDPMG TSFEHLKQ
Sbjct: 205 MYSLPFLTAPGSQLRGYVPVAPICTDKINAADYASVKTSTLIVYGDQDPMGLTSFEHLKQ 264
Query: 611 LPNHRVLVMEGAGHPCYLDKPEQWHTGLLDFLKGLA 718
LPNHRVLVMEGAGHPCYLDKPE+WHTGLLDFL+GLA
Sbjct: 265 LPNHRVLVMEGAGHPCYLDKPEEWHTGLLDFLQGLA 300
Score = 29.6 bits (65), Expect(2) = e-111
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = +1
Query: 19 RRLHSPASYLREPTHFPRHFT 81
RR +SPAS REPT PR FT
Sbjct: 65 RRQNSPASNPREPTQLPRCFT 85
>ref|XP_541859.2| PREDICTED: similar to abhydrolase domain containing 14A [Canis
familiaris].
Length = 354
Score = 153 bits (387), Expect = 2e-37
Identities = 87/192 (45%), Positives = 115/192 (59%), Gaps = 1/192 (0%)
Frame = +2
Query: 143 LFFREARPGSGQAARFSVLLLHGIRFSSETWQNLGTLHRLAEAGYRAVAIDLPGLGRSKE 322
+F+RE P +A R V+LLHG F+S TW+ LGTL LA+ GYRAVA+DLPG G S
Sbjct: 164 IFYREVLP-LHRARRVEVVLLHGKAFNSHTWEQLGTLQLLAQRGYRAVALDLPGFGNSAP 222
Query: 323 ATPAPIGELVPSSFLAAVVDALDLGPPVVVSPSLSGMYSLLFLTAPDSQLRGYVPVAPIC 502
+ A E + L V+ L++ ++VSPSLSG Y+L FL QLRG+VP+AP
Sbjct: 223 SKEANT-EAGRAELLERVLRDLEVHNAILVSPSLSGRYALPFLIQGHHQLRGFVPIAPAS 281
Query: 503 TDKINAADYARVKTSVLIVYGDQDP-MGQTSFEHLKQLPNHRVLVMEGAGHPCYLDKPEQ 679
T + VKT LI+YG+ D + + S L+ LPNH V+ + AGH CYL KP+
Sbjct: 282 TQNYTQEQFWAVKTPTLILYGELDRILARESLRQLRHLPNHSVVKLRDAGHACYLHKPQD 341
Query: 680 WHTGLLDFLKGL 715
+H LL FL L
Sbjct: 342 FHLVLLAFLDHL 353
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,003,318
Number of extensions: 1732426
Number of successful extensions: 10448
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 10135
Number of HSP's successfully gapped: 3
Length of query: 343
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 239
Effective length of database: 15,407,560
Effective search space: 3682406840
Effective search space used: 3682406840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007704
(1029 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_083907.3| abhydrolase domain-containing protein 14B [Mus ... 367 e-101
Alignment gi|NP_666031.2| abhydrolase domain-containing protein 14A isofo... 154 1e-37
Alignment gi|NP_001103741.1| abhydrolase domain-containing protein 14A is... 154 1e-37
Alignment gi|NP_001103742.1| abhydrolase domain-containing protein 14A is... 145 4e-35
>ref|NP_083907.3| abhydrolase domain-containing protein 14B [Mus musculus].
Length = 210
Score = 367 bits (941), Expect = e-101
Identities = 180/210 (85%), Positives = 191/210 (90%), Gaps = 1/210 (0%)
Frame = +2
Query: 92 MAGVEQHEGTIQVQGQSLFFREARPGSGQAARFSVLLLHGIRFSSETWQNLGTLHRLAEA 271
MAGV+QHEGTI+VQGQ+LFFRE RPGSGQ RFSVLLLHGIRFSSETWQNLGTL RLAEA
Sbjct: 1 MAGVDQHEGTIKVQGQNLFFRETRPGSGQPVRFSVLLLHGIRFSSETWQNLGTLQRLAEA 60
Query: 272 GYRAVAIDLPGLGRSKEAT-PAPIGELVPSSFLAAVVDALDLGPPVVVSPSLSGMYSLLF 448
GYRAVAIDLPGLGRSKEA PAPIGE P SFLAAVVD L+LGPPVV+SPSLSGMYSL F
Sbjct: 61 GYRAVAIDLPGLGRSKEAAAPAPIGEPAPGSFLAAVVDTLELGPPVVISPSLSGMYSLPF 120
Query: 449 LTAPDSQLRGYVPVAPICTDKINAADYARVKTSVLIVYGDQDPMGQTSFEHLKQLPNHRV 628
L AP SQLRG+VPVAPICTDKINA DYA VKT LIVYGDQDPMG +SF+HLKQLPNHRV
Sbjct: 121 LVAPGSQLRGFVPVAPICTDKINAVDYASVKTPALIVYGDQDPMGSSSFQHLKQLPNHRV 180
Query: 629 LVMEGAGHPCYLDKPEQWHTGLLDFLKGLA 718
LVMEGAGHPCYLDKP++WH GLLDFL+GLA
Sbjct: 181 LVMEGAGHPCYLDKPDEWHKGLLDFLQGLA 210
>ref|NP_666031.2| abhydrolase domain-containing protein 14A isoform a [Mus musculus].
Length = 248
Score = 154 bits (389), Expect = 1e-37
Identities = 90/194 (46%), Positives = 112/194 (57%), Gaps = 3/194 (1%)
Frame = +2
Query: 143 LFFREARPGSGQAARFSVLLLHGIRFSSETWQNLGTLHRLAEAGYRAVAIDLPGLGRS-- 316
+F+RE P QA R V+ LHG F+S TW+ LGTL L+E GYRAVAIDLPG G S
Sbjct: 58 IFYREVLPIQ-QARRAEVVFLHGKAFNSHTWEQLGTLQLLSERGYRAVAIDLPGFGNSAP 116
Query: 317 KEATPAPIGELVPSSFLAAVVDALDLGPPVVVSPSLSGMYSLLFLTAPDSQLRGYVPVAP 496
E G + L V L + V+VSPSLSG Y+L FL QLRG+VP+AP
Sbjct: 117 SEEVSTEAGRV---ELLERVFQDLQVQNTVLVSPSLSGSYALPFLMQNHHQLRGFVPIAP 173
Query: 497 ICTDKINAADYARVKTSVLIVYGDQD-PMGQTSFEHLKQLPNHRVLVMEGAGHPCYLDKP 673
T + VKT LI+YG+ D + + S + L+ LPNH V+ + AGH CYL KP
Sbjct: 174 TSTRNYAQEQFGAVKTPTLILYGELDHTLARESLQQLRHLPNHSVVKLHDAGHACYLHKP 233
Query: 674 EQWHTGLLDFLKGL 715
E +H LL FL L
Sbjct: 234 EAFHLALLAFLDHL 247
>ref|NP_001103741.1| abhydrolase domain-containing protein 14A isoform a [Mus musculus].
Length = 248
Score = 154 bits (389), Expect = 1e-37
Identities = 90/194 (46%), Positives = 112/194 (57%), Gaps = 3/194 (1%)
Frame = +2
Query: 143 LFFREARPGSGQAARFSVLLLHGIRFSSETWQNLGTLHRLAEAGYRAVAIDLPGLGRS-- 316
+F+RE P QA R V+ LHG F+S TW+ LGTL L+E GYRAVAIDLPG G S
Sbjct: 58 IFYREVLPIQ-QARRAEVVFLHGKAFNSHTWEQLGTLQLLSERGYRAVAIDLPGFGNSAP 116
Query: 317 KEATPAPIGELVPSSFLAAVVDALDLGPPVVVSPSLSGMYSLLFLTAPDSQLRGYVPVAP 496
E G + L V L + V+VSPSLSG Y+L FL QLRG+VP+AP
Sbjct: 117 SEEVSTEAGRV---ELLERVFQDLQVQNTVLVSPSLSGSYALPFLMQNHHQLRGFVPIAP 173
Query: 497 ICTDKINAADYARVKTSVLIVYGDQD-PMGQTSFEHLKQLPNHRVLVMEGAGHPCYLDKP 673
T + VKT LI+YG+ D + + S + L+ LPNH V+ + AGH CYL KP
Sbjct: 174 TSTRNYAQEQFGAVKTPTLILYGELDHTLARESLQQLRHLPNHSVVKLHDAGHACYLHKP 233
Query: 674 EQWHTGLLDFLKGL 715
E +H LL FL L
Sbjct: 234 EAFHLALLAFLDHL 247
>ref|NP_001103742.1| abhydrolase domain-containing protein 14A isoform b [Mus musculus].
Length = 266
Score = 145 bits (367), Expect = 4e-35
Identities = 92/212 (43%), Positives = 114/212 (53%), Gaps = 21/212 (9%)
Frame = +2
Query: 143 LFFREARPGSGQAARFSVLLLHGIRFSSETWQNLGTLHRLAEAGYRAVAIDLPGLGRSKE 322
+F+RE P QA R V+ LHG F+S TW+ LGTL L+E GYRAVAIDLPG E
Sbjct: 58 IFYREVLPIQ-QARRAEVVFLHGKAFNSHTWEQLGTLQLLSERGYRAVAIDLPG---DPE 113
Query: 323 ATPAPI----------GELVPS----------SFLAAVVDALDLGPPVVVSPSLSGMYSL 442
AP+ G PS L V L + V+VSPSLSG Y+L
Sbjct: 114 HFVAPMRLCLLLFLGFGNSAPSEEVSTEAGRVELLERVFQDLQVQNTVLVSPSLSGSYAL 173
Query: 443 LFLTAPDSQLRGYVPVAPICTDKINAADYARVKTSVLIVYGDQD-PMGQTSFEHLKQLPN 619
FL QLRG+VP+AP T + VKT LI+YG+ D + + S + L+ LPN
Sbjct: 174 PFLMQNHHQLRGFVPIAPTSTRNYAQEQFGAVKTPTLILYGELDHTLARESLQQLRHLPN 233
Query: 620 HRVLVMEGAGHPCYLDKPEQWHTGLLDFLKGL 715
H V+ + AGH CYL KPE +H LL FL L
Sbjct: 234 HSVVKLHDAGHACYLHKPEAFHLALLAFLDHL 265
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,136,099
Number of extensions: 1387175
Number of successful extensions: 7485
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 7184
Number of HSP's successfully gapped: 4
Length of query: 343
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 241
Effective length of database: 12,553,887
Effective search space: 3025486767
Effective search space used: 3025486767
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007704
(1029 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358508.1| PREDICTED: abhydrolase domain-containing pro... 421 e-118
Alignment gi|XP_003358507.1| PREDICTED: abhydrolase domain-containing pro... 421 e-118
Alignment gi|XP_003358524.1| PREDICTED: abhydrolase domain-containing pro... 157 1e-38
>ref|XP_003358508.1| PREDICTED: abhydrolase domain-containing protein 14B-like isoform 2
[Sus scrofa].
Length = 209
Score = 421 bits (1083), Expect = e-118
Identities = 209/209 (100%), Positives = 209/209 (100%)
Frame = +2
Query: 92 MAGVEQHEGTIQVQGQSLFFREARPGSGQAARFSVLLLHGIRFSSETWQNLGTLHRLAEA 271
MAGVEQHEGTIQVQGQSLFFREARPGSGQAARFSVLLLHGIRFSSETWQNLGTLHRLAEA
Sbjct: 1 MAGVEQHEGTIQVQGQSLFFREARPGSGQAARFSVLLLHGIRFSSETWQNLGTLHRLAEA 60
Query: 272 GYRAVAIDLPGLGRSKEATPAPIGELVPSSFLAAVVDALDLGPPVVVSPSLSGMYSLLFL 451
GYRAVAIDLPGLGRSKEATPAPIGELVPSSFLAAVVDALDLGPPVVVSPSLSGMYSLLFL
Sbjct: 61 GYRAVAIDLPGLGRSKEATPAPIGELVPSSFLAAVVDALDLGPPVVVSPSLSGMYSLLFL 120
Query: 452 TAPDSQLRGYVPVAPICTDKINAADYARVKTSVLIVYGDQDPMGQTSFEHLKQLPNHRVL 631
TAPDSQLRGYVPVAPICTDKINAADYARVKTSVLIVYGDQDPMGQTSFEHLKQLPNHRVL
Sbjct: 121 TAPDSQLRGYVPVAPICTDKINAADYARVKTSVLIVYGDQDPMGQTSFEHLKQLPNHRVL 180
Query: 632 VMEGAGHPCYLDKPEQWHTGLLDFLKGLA 718
VMEGAGHPCYLDKPEQWHTGLLDFLKGLA
Sbjct: 181 VMEGAGHPCYLDKPEQWHTGLLDFLKGLA 209
>ref|XP_003358507.1| PREDICTED: abhydrolase domain-containing protein 14B-like isoform 1
[Sus scrofa].
Length = 209
Score = 421 bits (1083), Expect = e-118
Identities = 209/209 (100%), Positives = 209/209 (100%)
Frame = +2
Query: 92 MAGVEQHEGTIQVQGQSLFFREARPGSGQAARFSVLLLHGIRFSSETWQNLGTLHRLAEA 271
MAGVEQHEGTIQVQGQSLFFREARPGSGQAARFSVLLLHGIRFSSETWQNLGTLHRLAEA
Sbjct: 1 MAGVEQHEGTIQVQGQSLFFREARPGSGQAARFSVLLLHGIRFSSETWQNLGTLHRLAEA 60
Query: 272 GYRAVAIDLPGLGRSKEATPAPIGELVPSSFLAAVVDALDLGPPVVVSPSLSGMYSLLFL 451
GYRAVAIDLPGLGRSKEATPAPIGELVPSSFLAAVVDALDLGPPVVVSPSLSGMYSLLFL
Sbjct: 61 GYRAVAIDLPGLGRSKEATPAPIGELVPSSFLAAVVDALDLGPPVVVSPSLSGMYSLLFL 120
Query: 452 TAPDSQLRGYVPVAPICTDKINAADYARVKTSVLIVYGDQDPMGQTSFEHLKQLPNHRVL 631
TAPDSQLRGYVPVAPICTDKINAADYARVKTSVLIVYGDQDPMGQTSFEHLKQLPNHRVL
Sbjct: 121 TAPDSQLRGYVPVAPICTDKINAADYARVKTSVLIVYGDQDPMGQTSFEHLKQLPNHRVL 180
Query: 632 VMEGAGHPCYLDKPEQWHTGLLDFLKGLA 718
VMEGAGHPCYLDKPEQWHTGLLDFLKGLA
Sbjct: 181 VMEGAGHPCYLDKPEQWHTGLLDFLKGLA 209
>ref|XP_003358524.1| PREDICTED: abhydrolase domain-containing protein 14A-like [Sus
scrofa].
Length = 316
Score = 157 bits (396), Expect = 1e-38
Identities = 90/192 (46%), Positives = 115/192 (59%), Gaps = 1/192 (0%)
Frame = +2
Query: 143 LFFREARPGSGQAARFSVLLLHGIRFSSETWQNLGTLHRLAEAGYRAVAIDLPGLGRSKE 322
LF+RE P QA R V+LLHG F+S TW+ LGTL LA+ GYRAVA+DLPG G S
Sbjct: 126 LFYREVLP-LHQARRVDVVLLHGKAFNSHTWEQLGTLQLLAQRGYRAVALDLPGFGNSAP 184
Query: 323 ATPAPIGELVPSSFLAAVVDALDLGPPVVVSPSLSGMYSLLFLTAPDSQLRGYVPVAPIC 502
+ A E + L V+ L++ V+VSPSLSG Y+L FL QL G+VP+AP
Sbjct: 185 SKEAST-EAGRAELLERVLRNLEVQNAVLVSPSLSGRYALPFLMRGHHQLHGFVPIAPAS 243
Query: 503 TDKINAADYARVKTSVLIVYGDQDP-MGQTSFEHLKQLPNHRVLVMEGAGHPCYLDKPEQ 679
T + VKT LI+YG+ D + Q S + L+ LPNH V+ + AGH CYL KP+
Sbjct: 244 TQNYTQEQFWAVKTPTLILYGELDRILAQESLQQLRHLPNHSVVKLRDAGHACYLHKPQD 303
Query: 680 WHTGLLDFLKGL 715
+H LL FL L
Sbjct: 304 FHLVLLAFLDHL 315
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,168,669
Number of extensions: 1101872
Number of successful extensions: 6515
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6371
Number of HSP's successfully gapped: 3
Length of query: 343
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 243
Effective length of database: 8,854,232
Effective search space: 2151578376
Effective search space used: 2151578376
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007704
(1029 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001139786.1| abhydrolase domain-containing protein 14B [H... 366 e-101
Alignment gi|NP_116139.1| abhydrolase domain-containing protein 14B [Homo... 366 e-101
Alignment gi|NP_056222.2| abhydrolase domain-containing protein 14A [Homo... 152 6e-37
>ref|NP_001139786.1| abhydrolase domain-containing protein 14B [Homo sapiens].
Length = 210
Score = 366 bits (939), Expect = e-101
Identities = 183/208 (87%), Positives = 193/208 (92%), Gaps = 1/208 (0%)
Frame = +2
Query: 95 AGVEQHEGTIQVQGQSLFFREARPGSGQAARFSVLLLHGIRFSSETWQNLGTLHRLAEAG 274
A VEQ EGTIQVQGQ+LFFREA PGSGQA RFSVLLLHGIRFSSETWQNLGTLHRLA+AG
Sbjct: 3 ASVEQREGTIQVQGQALFFREALPGSGQA-RFSVLLLHGIRFSSETWQNLGTLHRLAQAG 61
Query: 275 YRAVAIDLPGLGRSKEAT-PAPIGELVPSSFLAAVVDALDLGPPVVVSPSLSGMYSLLFL 451
YRAVAIDLPGLG SKEA PAPIGEL P SFLAAVVDAL+LGPPVV+SPSLSGMYSL FL
Sbjct: 62 YRAVAIDLPGLGHSKEAAAPAPIGELAPGSFLAAVVDALELGPPVVISPSLSGMYSLPFL 121
Query: 452 TAPDSQLRGYVPVAPICTDKINAADYARVKTSVLIVYGDQDPMGQTSFEHLKQLPNHRVL 631
TAP SQL G+VPVAPICTDKINAA+YA VKT LIVYGDQDPMGQTSFEHLKQLPNHRVL
Sbjct: 122 TAPGSQLPGFVPVAPICTDKINAANYASVKTPALIVYGDQDPMGQTSFEHLKQLPNHRVL 181
Query: 632 VMEGAGHPCYLDKPEQWHTGLLDFLKGL 715
+M+GAGHPCYLDKPE+WHTGLLDFL+GL
Sbjct: 182 IMKGAGHPCYLDKPEEWHTGLLDFLQGL 209
>ref|NP_116139.1| abhydrolase domain-containing protein 14B [Homo sapiens].
Length = 210
Score = 366 bits (939), Expect = e-101
Identities = 183/208 (87%), Positives = 193/208 (92%), Gaps = 1/208 (0%)
Frame = +2
Query: 95 AGVEQHEGTIQVQGQSLFFREARPGSGQAARFSVLLLHGIRFSSETWQNLGTLHRLAEAG 274
A VEQ EGTIQVQGQ+LFFREA PGSGQA RFSVLLLHGIRFSSETWQNLGTLHRLA+AG
Sbjct: 3 ASVEQREGTIQVQGQALFFREALPGSGQA-RFSVLLLHGIRFSSETWQNLGTLHRLAQAG 61
Query: 275 YRAVAIDLPGLGRSKEAT-PAPIGELVPSSFLAAVVDALDLGPPVVVSPSLSGMYSLLFL 451
YRAVAIDLPGLG SKEA PAPIGEL P SFLAAVVDAL+LGPPVV+SPSLSGMYSL FL
Sbjct: 62 YRAVAIDLPGLGHSKEAAAPAPIGELAPGSFLAAVVDALELGPPVVISPSLSGMYSLPFL 121
Query: 452 TAPDSQLRGYVPVAPICTDKINAADYARVKTSVLIVYGDQDPMGQTSFEHLKQLPNHRVL 631
TAP SQL G+VPVAPICTDKINAA+YA VKT LIVYGDQDPMGQTSFEHLKQLPNHRVL
Sbjct: 122 TAPGSQLPGFVPVAPICTDKINAANYASVKTPALIVYGDQDPMGQTSFEHLKQLPNHRVL 181
Query: 632 VMEGAGHPCYLDKPEQWHTGLLDFLKGL 715
+M+GAGHPCYLDKPE+WHTGLLDFL+GL
Sbjct: 182 IMKGAGHPCYLDKPEEWHTGLLDFLQGL 209
>ref|NP_056222.2| abhydrolase domain-containing protein 14A [Homo sapiens].
Length = 271
Score = 152 bits (383), Expect = 6e-37
Identities = 86/192 (44%), Positives = 114/192 (59%), Gaps = 1/192 (0%)
Frame = +2
Query: 143 LFFREARPGSGQAARFSVLLLHGIRFSSETWQNLGTLHRLAEAGYRAVAIDLPGLGRSKE 322
+F+RE P QA R V+LLHG F+S TW+ LGTL L++ GYRAVA+DLPG G S
Sbjct: 81 IFYREVLP-LNQAHRVEVVLLHGKAFNSHTWEQLGTLQLLSQRGYRAVALDLPGFGNSAP 139
Query: 323 ATPAPIGELVPSSFLAAVVDALDLGPPVVVSPSLSGMYSLLFLTAPDSQLRGYVPVAPIC 502
+ A E ++ L + L++ V+VSPSLSG Y+L FL QL G+VP+AP
Sbjct: 140 SKEAST-EAGRAALLERALRDLEVQNAVLVSPSLSGHYALPFLMRGHHQLHGFVPIAPTS 198
Query: 503 TDKINAADYARVKTSVLIVYGDQDP-MGQTSFEHLKQLPNHRVLVMEGAGHPCYLDKPEQ 679
T + VKT LI+YG+ D + + S L+ LPNH V+ + AGH CYL KP+
Sbjct: 199 TQNYTQEQFWAVKTPTLILYGELDHILARESLRQLRHLPNHSVVKLRNAGHACYLHKPQD 258
Query: 680 WHTGLLDFLKGL 715
+H LL FL L
Sbjct: 259 FHLVLLAFLDHL 270
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,898,903
Number of extensions: 1684115
Number of successful extensions: 9485
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9210
Number of HSP's successfully gapped: 3
Length of query: 343
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 240
Effective length of database: 14,901,872
Effective search space: 3576449280
Effective search space used: 3576449280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007704
(1029 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 579 e-162
>Sscrofa_Chr13
|| Length = 218635234
Score = 579 bits (292), Expect = e-162
Identities = 292/292 (100%)
Strand = Plus / Minus
Query: 540 agacctcggttcttattgtatatggagaccaggaccccatgggtcagaccagctttgagc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37298730 agacctcggttcttattgtatatggagaccaggaccccatgggtcagaccagctttgagc 37298671
Query: 600 acctgaagcagctgcccaatcaccgggtgttggtcatggagggggcagggcacccctgtt 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37298670 acctgaagcagctgcccaatcaccgggtgttggtcatggagggggcagggcacccctgtt 37298611
Query: 660 accttgacaaacctgagcagtggcacacagggctgctggattttctgaaagggctggcat 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37298610 accttgacaaacctgagcagtggcacacagggctgctggattttctgaaagggctggcat 37298551
Query: 720 gaggctcagccctgcggatgggggtgggccacttgcctgccttgggctctctcttgctca 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37298550 gaggctcagccctgcggatgggggtgggccacttgcctgccttgggctctctcttgctca 37298491
Query: 780 ttctctccttccctccgtgggctcctgctcttcatgcacatacaacaggtgt 831
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37298490 ttctctccttccctccgtgggctcctgctcttcatgcacatacaacaggtgt 37298439
Score = 480 bits (242), Expect = e-133
Identities = 242/242 (100%)
Strand = Plus / Minus
Query: 300 caggtctggggcgctccaaggaagcaacccctgcccctattggggagctggtccccagca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37299323 caggtctggggcgctccaaggaagcaacccctgcccctattggggagctggtccccagca 37299264
Query: 360 gtttcctggcagctgtggtggatgccttggacctgggccccccagttgtggtcagcccat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37299263 gtttcctggcagctgtggtggatgccttggacctgggccccccagttgtggtcagcccat 37299204
Query: 420 cgttgagtggcatgtactccctgctcttcctcactgccccagactcccagctccgaggct 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37299203 cgttgagtggcatgtactccctgctcttcctcactgccccagactcccagctccgaggct 37299144
Query: 480 atgtgccagtggcccccatctgcactgacaaaatcaatgctgccgactatgccagagtga 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37299143 atgtgccagtggcccccatctgcactgacaaaatcaatgctgccgactatgccagagtga 37299084
Query: 540 ag 541
||
Sbjct: 37299083 ag 37299082
Score = 468 bits (236), Expect = e-129
Identities = 236/236 (100%)
Strand = Plus / Minus
Query: 69 caggcacttcaccagctgcaggtatggcgggcgtggagcagcacgagggcaccatccagg 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37300623 caggcacttcaccagctgcaggtatggcgggcgtggagcagcacgagggcaccatccagg 37300564
Query: 129 tgcagggccagagccttttcttccgagaggctcggcctggcagtgggcaggccgcccgct 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37300563 tgcagggccagagccttttcttccgagaggctcggcctggcagtgggcaggccgcccgct 37300504
Query: 189 tctctgtgctgctgttgcatggcatacgcttctcctccgagacctggcagaacctgggca 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37300503 tctctgtgctgctgttgcatggcatacgcttctcctccgagacctggcagaacctgggca 37300444
Query: 249 cgctgcacaggctggccgaggctggctaccgggctgtggccattgacctgccaggt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37300443 cgctgcacaggctggccgaggctggctaccgggctgtggccattgacctgccaggt 37300388
Score = 155 bits (78), Expect = 6e-35
Identities = 97/104 (93%)
Strand = Plus / Minus
Query: 926 gtcagtaatcaagggacataatctggtggagggtaaattattcattagatgaccttctcc 985
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 37298345 gtcagtaatcaagggacataatctggtggagggtaattaattcattagatgaccttctcc 37298286
Query: 986 tataggctttctccagcctccccccacctcccanctcctncttt 1029
||||||||| ||||||||||||||||||||| ||||| ||||
Sbjct: 37298285 tataggcttctcccagcctccccccacctcccacctcctccttt 37298242
Score = 143 bits (72), Expect = 2e-31
Identities = 72/72 (100%)
Strand = Plus / Minus
Query: 1 cccgccctgggcctcagtcgccgcctgcactcgccggcctcctatctgcgcgagcccacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37301404 cccgccctgggcctcagtcgccgcctgcactcgccggcctcctatctgcgcgagcccacg 37301345
Query: 61 catttccccagg 72
||||||||||||
Sbjct: 37301344 catttccccagg 37301333
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,169,904
Number of extensions: 194
Number of successful extensions: 194
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 5
Length of query: 1029
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1008
Effective length of database: 2,808,413,156
Effective search space: 2830880461248
Effective search space used: 2830880461248
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)