Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007730
(1530 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069017.1| acetyl-CoA acetyltransferase, cytosolic [Bos... 707 0.0
Alignment gi|NP_001030419.1| 3-ketoacyl-CoA thiolase, mitochondrial [Bos ... 311 8e-85
Alignment gi|NP_001039540.1| acetyl-CoA acetyltransferase, mitochondrial ... 297 1e-80
Alignment gi|NP_001029491.1| 3-ketoacyl-CoA thiolase, peroxisomal [Bos ta... 251 9e-67
Alignment gi|NP_776761.1| trifunctional enzyme subunit beta, mitochondria... 184 2e-46
>ref|NP_001069017.1| acetyl-CoA acetyltransferase, cytosolic [Bos taurus].
Length = 397
Score = 707 bits (1826), Expect = 0.0
Identities = 355/397 (89%), Positives = 374/397 (94%)
Frame = +2
Query: 119 MSAGSDPVVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHV 298
MSA SDPVVIVSAART+IGSFNGALSTVPVHDLGSTVIREVLKRA V P+EVSEVIFGHV
Sbjct: 1 MSADSDPVVIVSAARTIIGSFNGALSTVPVHDLGSTVIREVLKRAAVAPEEVSEVIFGHV 60
Query: 299 LTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGME 478
L AGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQ+I +GDS IVVAGGME
Sbjct: 61 LAAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQSIRIGDSSIVVAGGME 120
Query: 479 NMSKAPHLVRLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDR 658
NMSKAPHLV LRTGV++GE L DSILCDGLTDAFHNYHMGITAENVA++WQVSREDQD+
Sbjct: 121 NMSKAPHLVHLRTGVKIGETPLADSILCDGLTDAFHNYHMGITAENVARQWQVSREDQDK 180
Query: 659 LAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLT 838
+A LSQ+RTE AQKAGHFDKEIVPVFVSS+KG+TEVKTDEFPR GS +EA+SKLKP FL
Sbjct: 181 VAVLSQNRTEHAQKAGHFDKEIVPVFVSSKKGLTEVKTDEFPRHGSNMEAVSKLKPCFLM 240
Query: 839 DGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEPSIMGTGPIPA 1018
DGTGTVTPANASGINDGAAAVVLMKKSEA NRGLTPLA IVSW+QAGVEPSIMG GPIPA
Sbjct: 241 DGTGTVTPANASGINDGAAAVVLMKKSEAGNRGLTPLAQIVSWAQAGVEPSIMGIGPIPA 300
Query: 1019 IKQAVAKAGWSLEDVDIFEINEAFAAVSVAIVKELGLNPEKVNTEGGAIALGHPLGASGC 1198
IKQAVAKAGWSLEDVD+FEINEAFAA+SVAI KELGLNPEKVNTEGGAIALGHPLGASGC
Sbjct: 301 IKQAVAKAGWSLEDVDVFEINEAFAALSVAIAKELGLNPEKVNTEGGAIALGHPLGASGC 360
Query: 1199 RILVTLLHTMERKGCQRGVTALCIGGGMGIAMCVQRG 1309
RILVTLLHT+ERKG RGV ALCIGGGMGIAMCVQRG
Sbjct: 361 RILVTLLHTLERKGGHRGVAALCIGGGMGIAMCVQRG 397
>ref|NP_001030419.1| 3-ketoacyl-CoA thiolase, mitochondrial [Bos taurus].
Length = 397
Score = 311 bits (798), Expect = 8e-85
Identities = 169/390 (43%), Positives = 233/390 (59%), Gaps = 2/390 (0%)
Frame = +2
Query: 140 VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 319
V IV+A RT G++ G L D+ R L V P+ V V+ G+V+ +
Sbjct: 7 VFIVAAKRTPFGAYGGLLKDFTPTDMAEFAARAALSAGRVSPETVDSVVVGNVMQSSSDA 66
Query: 320 NPV-RQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP 496
+ R + GIP PA + +CGSG +++ Q I DS +V+ GG E+MS+AP
Sbjct: 67 IYLARHVGLRVGIPKETPAITINRLCGSGFQSIVSGCQEICSRDSEVVLCGGTESMSQAP 126
Query: 497 HLVR-LRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRLAALS 673
+ VR +R G +LG + L GLTD M ITAEN+A K Q+SRED DR A S
Sbjct: 127 YCVRNIRFGTKLGSELKLEDTLWTGLTDTHVQMPMAITAENLAVKHQISREDCDRYALQS 186
Query: 674 QDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLTDGTGT 853
Q R + A AG+FD E+ PV V +RKG ++ DE PRP +T+E ++KL P F +GT
Sbjct: 187 QQRWKTANDAGYFDNEMAPVEVKTRKGKQTMQVDEHPRPQTTMEQLNKLPPVFKKEGT-- 244
Query: 854 VTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEPSIMGTGPIPAIKQAV 1033
VT NASG++DGA AV++ + + TPLA IV + +G +P+IMG GP+PAI A+
Sbjct: 245 VTAGNASGVSDGAGAVIIASEDAVKKHNFTPLARIVGYFVSGCDPTIMGIGPVPAISGAL 304
Query: 1034 AKAGWSLEDVDIFEINEAFAAVSVAIVKELGLNPEKVNTEGGAIALGHPLGASGCRILVT 1213
K G SL+D+D+ E+NEAFA +A+ K L L+P K N GGAIALGHPL SG RI
Sbjct: 305 KKTGLSLKDMDLVEVNEAFAPQYLAVEKSLNLDPSKTNVNGGAIALGHPLAGSGSRITAH 364
Query: 1214 LLHTMERKGCQRGVTALCIGGGMGIAMCVQ 1303
L+H + R+G + V + CIGGG GIA+ ++
Sbjct: 365 LVHELRRRGGKYAVGSACIGGGQGIAVIIE 394
>ref|NP_001039540.1| acetyl-CoA acetyltransferase, mitochondrial precursor [Bos taurus].
Length = 422
Score = 297 bits (761), Expect = 1e-80
Identities = 168/391 (42%), Positives = 241/391 (61%), Gaps = 2/391 (0%)
Frame = +2
Query: 140 VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 319
VVIVSA RT IGSF G+LS++P LGS I+ +++A + +EV E G+VL G GQ
Sbjct: 37 VVIVSAIRTPIGSFLGSLSSLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGEGQ 96
Query: 320 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAPH 499
P RQA +GAG+P S P + +C SG+KA+ +A+Q + G ++VAGGME+MS P+
Sbjct: 97 APTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQNLMCGHQDVMVAGGMESMSNVPY 156
Query: 500 LVRLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRLAALSQD 679
++ R G L D I+ DGLTD ++ HMG AEN AKK ++RE+QD A S
Sbjct: 157 VMN-RGATPYGGVKLEDLIVKDGLTDVYNKIHMGNCAENTAKKLNITREEQDTYALNSYT 215
Query: 680 RTEKAQKAGHFDKEIVPVFVS--SRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLTDGTGT 853
R++ A +AG F E+VPV ++ + V + +E+ R + KLK F + GT
Sbjct: 216 RSKAAWEAGRFGNEVVPVTITVKGKPDVVVKEDEEYKRVD--FSKIPKLKTVFQREN-GT 272
Query: 854 VTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEPSIMGTGPIPAIKQAV 1033
VT ANAS +NDGAAAVVLM A+ + PLA I +++ A VEP P A+ + +
Sbjct: 273 VTAANASTLNDGAAAVVLMTADAAKRLNVKPLARIAAFADAAVEPIDFPLAPAYAVPKVL 332
Query: 1034 AKAGWSLEDVDIFEINEAFAAVSVAIVKELGLNPEKVNTEGGAIALGHPLGASGCRILVT 1213
AG ED+ ++E+NEAF+ V +A +K L ++P+KVN GGA++LGHP+G SG RI+V
Sbjct: 333 KDAGLKKEDITMWEVNEAFSVVVLANIKMLEMDPQKVNINGGAVSLGHPIGMSGARIVVH 392
Query: 1214 LLHTMERKGCQRGVTALCIGGGMGIAMCVQR 1306
L H + K + G+ ++C GGG AM +Q+
Sbjct: 393 LAHAL--KQGEYGLASICNGGGGASAMLIQK 421
>ref|NP_001029491.1| 3-ketoacyl-CoA thiolase, peroxisomal [Bos taurus].
Length = 424
Score = 251 bits (642), Expect = 9e-67
Identities = 166/396 (41%), Positives = 230/396 (58%), Gaps = 7/396 (1%)
Frame = +2
Query: 125 AGSDPVVIVSAARTVIG-SFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVL 301
A ++ VV+V RT IG S G +L S V+ VL+ + P ++ ++ G+VL
Sbjct: 33 ASAEDVVVVHGRRTAIGRSGRGGFKDTTPDELLSAVMTAVLQDVKLSPAQLGDICVGNVL 92
Query: 302 TAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMEN 481
G G R A + IP +VP + C SGL+AV A I G I +A G+E+
Sbjct: 93 QPGAGATMARIAQFLSDIPETVPLSAVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVES 152
Query: 482 MSKAPHLVRLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRL 661
MS A RL E L MGIT+ENVA+++ +SRE QD
Sbjct: 153 MSLADRGNPGNITSRLVEKEKARDCLIP----------MGITSENVAEQFGISREKQDTF 202
Query: 662 AALSQDRTEKAQKAGHFDKEIVPVFVSSR--KGVTE---VKTDEFPRPGSTLEAMSKLKP 826
A SQ + +AQ+ G F EIVPV + R KG + V DE RP +T+E ++KLKP
Sbjct: 203 ALASQQKAARAQRQGCFQAEIVPVTTTVRDDKGTEQSITVAQDEGIRPNTTMEGLAKLKP 262
Query: 827 YFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEPSIMGTG 1006
F DG G+ T N+S ++DGAAA++L ++S+AE GL L + S++ GV P IMG G
Sbjct: 263 AF-KDG-GSTTAGNSSQVSDGAAAILLARRSKAEELGLPILGVLRSYAVVGVPPDIMGIG 320
Query: 1007 PIPAIKQAVAKAGWSLEDVDIFEINEAFAAVSVAIVKELGLNPEKVNTEGGAIALGHPLG 1186
P AI A+ KAG +++DVDIFEINEAFA+ +V V++L L EKVN GGA+ALGHPLG
Sbjct: 321 PAYAIPVALQKAGLTVDDVDIFEINEAFASQAVYCVEKLKLPLEKVNPLGGAVALGHPLG 380
Query: 1187 ASGCRILVTLLHTMERKGCQR-GVTALCIGGGMGIA 1291
+G R ++TLL+ ++R+G + GV ++CIG GMG A
Sbjct: 381 CTGARQVITLLNELKRRGKRAYGVVSMCIGTGMGAA 416
>ref|NP_776761.1| trifunctional enzyme subunit beta, mitochondrial precursor [Bos
taurus].
Length = 475
Score = 184 bits (467), Expect = 2e-46
Identities = 137/423 (32%), Positives = 214/423 (50%), Gaps = 35/423 (8%)
Frame = +2
Query: 140 VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 319
+V+V RT + + HDL + +L R +V V +IFG V+
Sbjct: 55 IVVVDGVRTPFLLSGTSYKDLMPHDLARAALSGLLHRTSVPKDVVDYIIFGTVIQEVKTS 114
Query: 320 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP- 496
N R+A++GAG PA + M C S +A+ A I G +VVAGG+E MS P
Sbjct: 115 NVAREAALGAGFSDKTPAHTVTMACISSNQAMTTAVGLIASGQCDVVVAGGVELMSDIPI 174
Query: 497 -HLVRLRTGV----RLGEAALTDSILCD-----------GLTDAFHNYHMGITAENVAKK 628
H ++R + + A SI+ +++ + MG +A+ +A
Sbjct: 175 RHSRKMRKMMLDLNKAKTLAQRLSIISKFRLNFLSPELPAVSEFSTSETMGHSADRLAAA 234
Query: 629 WQVSREDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEA 808
+ +SRE+QD A S +KAQ G ++VP V R VT+ D RP S+L+
Sbjct: 235 FAISREEQDEYALRSHSLAKKAQDEGLLS-DVVPFKVPGRDTVTQ---DNGIRP-SSLDQ 289
Query: 809 MSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEP 988
M+KLKP F+ GTVT AN+S + DGA+AV++M + +A G P A++ + +P
Sbjct: 290 MAKLKPAFIKP-YGTVTAANSSFLTDGASAVLIMAEEKALAMGYKPKAYLRDFMYVSQDP 348
Query: 989 SI-MGTGPIPAIKQAVAKAGWSLEDVDIFEINEAFAAVSVAIVK---------------- 1117
+ GP A + + KAG ++ D+D+FE +EAF+ +A +K
Sbjct: 349 KDQLLLGPTYATPKVLEKAGLTMNDIDVFEFHEAFSGQILANLKAMDSDWFAQNYMGRKA 408
Query: 1118 ELGLNP-EKVNTEGGAIALGHPLGASGCRILVTLLHTMERKGCQRGVTALCIGGGMGIAM 1294
++GL P EK N GG+++LGHP GA+GCR+++ + + ++G Q G+ A C GG G AM
Sbjct: 409 KVGLPPLEKFNNWGGSLSLGHPFGATGCRLVMAAANRLRKEGGQYGLVAACAAGGQGHAM 468
Query: 1295 CVQ 1303
V+
Sbjct: 469 IVE 471
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,945,463
Number of extensions: 1611655
Number of successful extensions: 5309
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5283
Number of HSP's successfully gapped: 6
Length of query: 510
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 403
Effective length of database: 14,140,958
Effective search space: 5698806074
Effective search space used: 5698806074
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007730
(1530 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_541180.2| PREDICTED: similar to Acetyl-CoA acetyltransfer... 687 0.0
Alignment gi|XP_546539.2| PREDICTED: similar to Acetyl-CoA acetyltransfer... 305 1e-82
Alignment gi|XP_534222.2| PREDICTED: similar to 3-ketoacyl-CoA thiolase, ... 252 6e-67
Alignment gi|XP_547690.2| PREDICTED: similar to acetyl-coenzyme A acyltra... 212 7e-55
Alignment gi|XP_849696.1| PREDICTED: similar to Trifunctional enzyme beta... 178 1e-44
Alignment gi|XP_865227.1| PREDICTED: similar to hydroxyacyl dehydrogenase... 172 6e-43
Alignment gi|XP_538166.1| PREDICTED: similar to hydroxyacyl dehydrogenase... 172 6e-43
Alignment gi|XP_859591.1| PREDICTED: similar to Trifunctional enzyme beta... 155 8e-38
Alignment gi|XP_859620.1| PREDICTED: similar to hydroxyacyl dehydrogenase... 155 1e-37
Alignment gi|XP_865177.1| PREDICTED: similar to hydroxyacyl-Coenzyme A de... 151 1e-36
>ref|XP_541180.2| PREDICTED: similar to Acetyl-CoA acetyltransferase, cytosolic
(Cytosolic acetoacetyl-CoA thiolase) (Acetyl CoA
transferase-like protein) [Canis familiaris].
Length = 397
Score = 687 bits (1772), Expect = 0.0
Identities = 343/388 (88%), Positives = 364/388 (93%)
Frame = +2
Query: 119 MSAGSDPVVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHV 298
MSAGSDPVVIVSAART IGSFNGAL+TVP HDLGS+VI+EVL+RA V P+EVSEVIFGHV
Sbjct: 1 MSAGSDPVVIVSAARTPIGSFNGALATVPAHDLGSSVIKEVLRRAAVAPEEVSEVIFGHV 60
Query: 299 LTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGME 478
L AGCGQNPVRQAS+GAGIPY+VPAWSCQM+CGSGLKAVCLAAQ+IG+GDS IVVAGGME
Sbjct: 61 LAAGCGQNPVRQASMGAGIPYAVPAWSCQMVCGSGLKAVCLAAQSIGIGDSSIVVAGGME 120
Query: 479 NMSKAPHLVRLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDR 658
+MSKAPHLV LR GV++GE L DSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQD+
Sbjct: 121 SMSKAPHLVHLRAGVKIGEMPLADSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDK 180
Query: 659 LAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLT 838
A LSQ+RTE AQKAG+FDKEIVPVFVSSRKG+TEVKTDEFPR GS +EA+SKLKPYFLT
Sbjct: 181 CAVLSQNRTESAQKAGYFDKEIVPVFVSSRKGLTEVKTDEFPRHGSNIEAVSKLKPYFLT 240
Query: 839 DGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEPSIMGTGPIPA 1018
DGTGTVTPANASGINDGAAAVVLMKKSEA NRGLTPLA IVSWSQ GVEPSIMGTGPIPA
Sbjct: 241 DGTGTVTPANASGINDGAAAVVLMKKSEAANRGLTPLAQIVSWSQVGVEPSIMGTGPIPA 300
Query: 1019 IKQAVAKAGWSLEDVDIFEINEAFAAVSVAIVKELGLNPEKVNTEGGAIALGHPLGASGC 1198
IKQAVAKAGWSLEDVDIFEINEAFAA+SVAI KELGLNPEKVN +GGAIALGHPLGASGC
Sbjct: 301 IKQAVAKAGWSLEDVDIFEINEAFAALSVAITKELGLNPEKVNIQGGAIALGHPLGASGC 360
Query: 1199 RILVTLLHTMERKGCQRGVTALCIGGGM 1282
RILVTLLHTMERKG RGV ALCIGGGM
Sbjct: 361 RILVTLLHTMERKGGHRGVAALCIGGGM 388
>ref|XP_546539.2| PREDICTED: similar to Acetyl-CoA acetyltransferase, mitochondrial
precursor (Acetoacetyl-CoA thiolase) (T2) [Canis
familiaris].
Length = 433
Score = 305 bits (780), Expect = 1e-82
Identities = 167/389 (42%), Positives = 244/389 (62%)
Frame = +2
Query: 140 VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 319
VVIVSAART IGSF G+LS++P LGS I+ V+++A + +EV E G+VL G GQ
Sbjct: 48 VVIVSAARTPIGSFLGSLSSLPATKLGSIAIQGVIEKAGIPKEEVKEAYMGNVLQGGEGQ 107
Query: 320 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAPH 499
P RQA++GAG+P S P + +C SG+KA+ +A+Q++ G ++VAGGME+MS P+
Sbjct: 108 APTRQAALGAGLPISTPCTTVNKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMSNVPY 167
Query: 500 LVRLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRLAALSQD 679
++ R G L D I+ DGLTD ++ HMG AEN AKK ++RE+QD A S
Sbjct: 168 VMS-RGATPYGGVKLEDLIVKDGLTDVYNKIHMGNCAENTAKKMNITREEQDTYALSSYT 226
Query: 680 RTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLTDGTGTVT 859
R++ A +AG F E++PV V+++ + T++ + KLK F + GTVT
Sbjct: 227 RSKAAWEAGRFGSEVIPVTVTTKGKPDVLVTEDEEYKRVDFSKVPKLKTVFQKEN-GTVT 285
Query: 860 PANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEPSIMGTGPIPAIKQAVAK 1039
ANAS +NDGAAAVVLM A + PLA + +++ A VEP P A+ + +
Sbjct: 286 AANASTLNDGAAAVVLMTADAARRLKVKPLARVAAFADAAVEPIDFPVAPAYAVPKVLRD 345
Query: 1040 AGWSLEDVDIFEINEAFAAVSVAIVKELGLNPEKVNTEGGAIALGHPLGASGCRILVTLL 1219
AG ED+ ++E+NEAF+ V +A +K L L+P+KVN GGA++LGHP+G SG RI+V L+
Sbjct: 346 AGLKKEDITMWEVNEAFSLVVLANIKMLDLDPQKVNMNGGAVSLGHPIGMSGARIVVHLV 405
Query: 1220 HTMERKGCQRGVTALCIGGGMGIAMCVQR 1306
H + K + G+ ++C GGG A+ +Q+
Sbjct: 406 HAL--KQGEYGLASICNGGGGASALLIQK 432
>ref|XP_534222.2| PREDICTED: similar to 3-ketoacyl-CoA thiolase, peroxisomal precursor
(Beta-ketothiolase) (Acetyl-CoA acyltransferase)
(Peroxisomal 3-oxoacyl-CoA thiolase) isoform 1 [Canis
familiaris].
Length = 426
Score = 252 bits (644), Expect = 6e-67
Identities = 165/396 (41%), Positives = 227/396 (57%), Gaps = 7/396 (1%)
Frame = +2
Query: 125 AGSDPVVIVSAARTVIG-SFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVL 301
A +D VV+V RT IG G +L S V+ VL+ + P ++ ++ G+VL
Sbjct: 35 ASADDVVVVHGRRTAIGRGGRGGFKDTTPDELLSAVMTAVLQDVRLSPAQLGDICVGNVL 94
Query: 302 TAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMEN 481
G G R A + IP +VP + C SGL+A+ A I G I +A G+E+
Sbjct: 95 QPGAGAIMARIAQFLSDIPETVPLSTVNRQCSSGLQALANIAGGIRNGSYDIGMACGVES 154
Query: 482 MSKAPHLVRLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRL 661
MS A RL E L MGIT+ENVA+++ +SRE QD
Sbjct: 155 MSLADRGNPGNITSRLVEKKKARDCLIP----------MGITSENVAERFGISREKQDTF 204
Query: 662 AALSQDRTEKAQKAGHFDKEIVPVF--VSSRKGVTEVKT---DEFPRPGSTLEAMSKLKP 826
A SQ + +AQ G F EIVPV V KG + T DE RP +T+E ++KLKP
Sbjct: 205 ALASQQKAARAQSKGCFQAEIVPVTTTVHDDKGAERIITVAQDEGIRPNTTMEGLAKLKP 264
Query: 827 YFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEPSIMGTG 1006
F G+ T N+S ++DGAAA++L ++S+AE GL L + S++ GV P IMG G
Sbjct: 265 AFKQGGS--TTAGNSSQVSDGAAALLLARRSKAEELGLPVLGVLRSYAVVGVPPDIMGIG 322
Query: 1007 PIPAIKQAVAKAGWSLEDVDIFEINEAFAAVSVAIVKELGLNPEKVNTEGGAIALGHPLG 1186
P AI A+ KAG +++DVDIFEINEAFA+ +V V++LGL PEKVN GGA+ALGHPLG
Sbjct: 323 PAYAIPVALQKAGLTVKDVDIFEINEAFASQAVYCVEKLGLPPEKVNPLGGAVALGHPLG 382
Query: 1187 ASGCRILVTLLHTMERKGCQR-GVTALCIGGGMGIA 1291
+G R ++TLL+ ++R+G + GV ++CIG GMG A
Sbjct: 383 CTGARQVITLLNELKRRGKRAYGVVSMCIGTGMGAA 418
>ref|XP_547690.2| PREDICTED: similar to acetyl-coenzyme A acyltransferase 2 [Canis
familiaris].
Length = 382
Score = 212 bits (540), Expect = 7e-55
Identities = 134/389 (34%), Positives = 208/389 (53%), Gaps = 1/389 (0%)
Frame = +2
Query: 140 VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 319
V IV+A RT G++ G L DL R L V P+ + +I G+V+ +
Sbjct: 3 VFIVAAKRTPFGAYGGLLKDFTATDLTELAARAALSAGGVSPEAIDSIIVGNVMQSSSDA 62
Query: 320 NPV-RQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP 496
+ R + G+P VPA+ +CGSG +++ Q I D+ GG + +P
Sbjct: 63 PYLARHVGLRVGVPKEVPAFVVNRLCGSGFQSIVSGCQRITGKDAEKKGCGGTGCLGLSP 122
Query: 497 HLVRLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRLAALSQ 676
H G + + +L+ + L + ++ T + + S +D R ++
Sbjct: 123 H------GQKNQKQSLSPTELQNLDYNSMSESQFRSTIIQLLVALEKSIKDS-RDFMTAE 175
Query: 677 DRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLTDGTGTV 856
R +A+ ++ + V + + V EV +E +P +TLE ++KL P F +GT V
Sbjct: 176 FRANQAEIKNQLNEMQSKLEVLTMR-VNEV--EERVKPRTTLEQLNKLPPLFKKEGT--V 230
Query: 857 TPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEPSIMGTGPIPAIKQAVA 1036
T NASG++DGA AV++ + + TPLA IV + +G +PSIMG GP+PAI A+
Sbjct: 231 TAGNASGVSDGAGAVIIASEDAVKKHNFTPLARIVGYFVSGCDPSIMGIGPVPAINGALK 290
Query: 1037 KAGWSLEDVDIFEINEAFAAVSVAIVKELGLNPEKVNTEGGAIALGHPLGASGCRILVTL 1216
K G SL+D+D+ E+NEAFA +A+ K L L+P K N GGAIALGHPLG SG RI+ L
Sbjct: 291 KIGRSLKDMDLVEVNEAFAPQYLAVEKSLDLDPSKTNVNGGAIALGHPLGGSGTRIMAHL 350
Query: 1217 LHTMERKGCQRGVTALCIGGGMGIAMCVQ 1303
+H + R+G + + + CIGGG GIA+ ++
Sbjct: 351 VHELRRRGGKYAMGSACIGGGQGIAVVIE 379
>ref|XP_849696.1| PREDICTED: similar to Trifunctional enzyme beta subunit,
mitochondrial precursor (TP-beta) isoform 1 [Canis
familiaris].
Length = 475
Score = 178 bits (451), Expect = 1e-44
Identities = 137/423 (32%), Positives = 207/423 (48%), Gaps = 35/423 (8%)
Frame = +2
Query: 140 VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 319
+V+V R + + HDL + +L R NV V +IFG V+
Sbjct: 55 IVVVDGVRIPFLQSGTSYKDLMPHDLARAALSGLLHRTNVPKDVVDYIIFGTVIQEVKTS 114
Query: 320 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP- 496
N R+A++GAG PA + M C S +A+ I G +VVAGG+E MS P
Sbjct: 115 NVAREAALGAGFSDKTPAHTVTMACISANQAMTTGVGLIASGQCDVVVAGGVELMSDVPI 174
Query: 497 --------HLVRLRTGVRLGE-AALTDSILCDGLT-------DAFHNYHMGITAENVAKK 628
++ L LG+ +L + L+ + + MG +A+ +A
Sbjct: 175 RHSRKMRKMMLDLNKAKTLGQRLSLLSKFRLNFLSPELPAVAEFSTSETMGHSADRLAAA 234
Query: 629 WQVSREDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEA 808
+ VSR DQD A S +KAQ G +IVP V + VT+ D RP S+LE
Sbjct: 235 FAVSRADQDEYALRSHSLAKKAQDEGLL-SDIVPFKVPGKDTVTK---DNGIRP-SSLEQ 289
Query: 809 MSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEP 988
M+KLKP F+ GTVT AN+S + DGA+A+++M + +A G P A++ + +P
Sbjct: 290 MAKLKPAFIKP-YGTVTAANSSFLTDGASAMLIMAEEKALAMGYKPKAYLRDFVYVSQDP 348
Query: 989 -SIMGTGPIPAIKQAVAKAGWSLEDVDIFEINEAFAAVSVAIVK---------------- 1117
+ GP A + + KAG +L D+D FE +EAF+ +A K
Sbjct: 349 KDQLLLGPTYATPKVLEKAGLTLNDIDAFEFHEAFSGQILANFKAMDSDWFAQNYMGRKT 408
Query: 1118 ELGLNP-EKVNTEGGAIALGHPLGASGCRILVTLLHTMERKGCQRGVTALCIGGGMGIAM 1294
++G P EK N GG+++LGHP GA+GCR+++ + + ++G Q G+ A C GG G AM
Sbjct: 409 KVGSPPLEKFNNWGGSLSLGHPFGATGCRLVMAAANRLRKEGGQYGLVAACAAGGQGHAM 468
Query: 1295 CVQ 1303
V+
Sbjct: 469 IVE 471
>ref|XP_865227.1| PREDICTED: similar to hydroxyacyl dehydrogenase, subunit B isoform 4
[Canis familiaris].
Length = 444
Score = 172 bits (437), Expect = 6e-43
Identities = 136/423 (32%), Positives = 205/423 (48%), Gaps = 35/423 (8%)
Frame = +2
Query: 140 VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 319
+V+V R + + HDL +L R NV V +IFG V+
Sbjct: 24 IVVVDGVRIPFLQSGTSYKDLMPHDLARAAFSGLLHRTNVSKDVVDYIIFGTVIQEVKTS 83
Query: 320 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP- 496
N R+A++GAG PA + M C S +A+ I G +VVAGG+E MS P
Sbjct: 84 NVAREAALGAGFSDKTPAHTVTMACISANQAMITGVGLIASGQCDVVVAGGVELMSDVPI 143
Query: 497 --------HLVRLRTGVRLGE-AALTDSILCDGLT-------DAFHNYHMGITAENVAKK 628
++ L LG+ +L + L+ + + MG +A+ +A
Sbjct: 144 RHSRKIRKMMLDLNKAKTLGQRLSLLSKFRLNFLSPELPAVAEFSTSETMGHSADRLAAA 203
Query: 629 WQVSREDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEA 808
+ VSR DQD A S +KAQ G +IVP V + VT+ D RP S+LE
Sbjct: 204 FAVSRADQDEYALRSHSLAKKAQDEGLL-SDIVPFKVPGKDTVTK---DNDIRP-SSLEQ 258
Query: 809 MSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEP 988
M+KLKP F+ GTVT AN+S + DGA+A+++M + +A G A++ + +P
Sbjct: 259 MAKLKPAFIKP-YGTVTTANSSFLTDGASAMLIMAEEKALAMGYKLKAYLRDFVYVSQDP 317
Query: 989 -SIMGTGPIPAIKQAVAKAGWSLEDVDIFEINEAFAAVSVAIVK---------------- 1117
+ GP A + + KAG +L D+D FE +EAF+ +A K
Sbjct: 318 KDQLLLGPTYATPKVLEKAGLTLNDIDAFEFHEAFSGQILANFKAMDSDWFAQNYMGRKT 377
Query: 1118 ELGLNP-EKVNTEGGAIALGHPLGASGCRILVTLLHTMERKGCQRGVTALCIGGGMGIAM 1294
++G P EK N GG+++LGHP GA+GCR+++ + + ++G Q G+ A C GG G AM
Sbjct: 378 KVGSPPLEKFNNWGGSLSLGHPFGATGCRLVMAGANRLRKEGGQYGLVAACAAGGQGHAM 437
Query: 1295 CVQ 1303
V+
Sbjct: 438 IVE 440
>ref|XP_538166.1| PREDICTED: similar to hydroxyacyl dehydrogenase, subunit B isoform 1
[Canis familiaris].
Length = 458
Score = 172 bits (437), Expect = 6e-43
Identities = 136/423 (32%), Positives = 205/423 (48%), Gaps = 35/423 (8%)
Frame = +2
Query: 140 VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 319
+V+V R + + HDL +L R NV V +IFG V+
Sbjct: 38 IVVVDGVRIPFLQSGTSYKDLMPHDLARAAFSGLLHRTNVSKDVVDYIIFGTVIQEVKTS 97
Query: 320 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP- 496
N R+A++GAG PA + M C S +A+ I G +VVAGG+E MS P
Sbjct: 98 NVAREAALGAGFSDKTPAHTVTMACISANQAMITGVGLIASGQCDVVVAGGVELMSDVPI 157
Query: 497 --------HLVRLRTGVRLGE-AALTDSILCDGLT-------DAFHNYHMGITAENVAKK 628
++ L LG+ +L + L+ + + MG +A+ +A
Sbjct: 158 RHSRKIRKMMLDLNKAKTLGQRLSLLSKFRLNFLSPELPAVAEFSTSETMGHSADRLAAA 217
Query: 629 WQVSREDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEA 808
+ VSR DQD A S +KAQ G +IVP V + VT+ D RP S+LE
Sbjct: 218 FAVSRADQDEYALRSHSLAKKAQDEGLL-SDIVPFKVPGKDTVTK---DNDIRP-SSLEQ 272
Query: 809 MSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEP 988
M+KLKP F+ GTVT AN+S + DGA+A+++M + +A G A++ + +P
Sbjct: 273 MAKLKPAFIKP-YGTVTTANSSFLTDGASAMLIMAEEKALAMGYKLKAYLRDFVYVSQDP 331
Query: 989 -SIMGTGPIPAIKQAVAKAGWSLEDVDIFEINEAFAAVSVAIVK---------------- 1117
+ GP A + + KAG +L D+D FE +EAF+ +A K
Sbjct: 332 KDQLLLGPTYATPKVLEKAGLTLNDIDAFEFHEAFSGQILANFKAMDSDWFAQNYMGRKT 391
Query: 1118 ELGLNP-EKVNTEGGAIALGHPLGASGCRILVTLLHTMERKGCQRGVTALCIGGGMGIAM 1294
++G P EK N GG+++LGHP GA+GCR+++ + + ++G Q G+ A C GG G AM
Sbjct: 392 KVGSPPLEKFNNWGGSLSLGHPFGATGCRLVMAGANRLRKEGGQYGLVAACAAGGQGHAM 451
Query: 1295 CVQ 1303
V+
Sbjct: 452 IVE 454
>ref|XP_859591.1| PREDICTED: similar to Trifunctional enzyme beta subunit,
mitochondrial precursor (TP-beta) isoform 3 [Canis
familiaris].
Length = 440
Score = 155 bits (393), Expect = 8e-38
Identities = 126/392 (32%), Positives = 189/392 (48%), Gaps = 35/392 (8%)
Frame = +2
Query: 140 VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 319
+V+V R + + HDL + +L R NV V +IFG V+
Sbjct: 55 IVVVDGVRIPFLQSGTSYKDLMPHDLARAALSGLLHRTNVPKDVVDYIIFGTVIQEVKTS 114
Query: 320 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP- 496
N R+A++GAG PA + M C S +A+ I G +VVAGG+E MS P
Sbjct: 115 NVAREAALGAGFSDKTPAHTVTMACISANQAMTTGVGLIASGQCDVVVAGGVELMSDVPI 174
Query: 497 --------HLVRLRTGVRLGE-AALTDSILCDGLT-------DAFHNYHMGITAENVAKK 628
++ L LG+ +L + L+ + + MG +A+ +A
Sbjct: 175 RHSRKMRKMMLDLNKAKTLGQRLSLLSKFRLNFLSPELPAVAEFSTSETMGHSADRLAAA 234
Query: 629 WQVSREDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEA 808
+ VSR DQD A S +KAQ G +IVP V + VT+ D RP S+LE
Sbjct: 235 FAVSRADQDEYALRSHSLAKKAQDEGLL-SDIVPFKVPGKDTVTK---DNGIRP-SSLEQ 289
Query: 809 MSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEP 988
M+KLKP F+ GTVT AN+S + DGA+A+++M + +A G P A++ + +P
Sbjct: 290 MAKLKPAFIKP-YGTVTAANSSFLTDGASAMLIMAEEKALAMGYKPKAYLRDFVYVSQDP 348
Query: 989 -SIMGTGPIPAIKQAVAKAGWSLEDVDIFEINEAFAAVSVAIVK---------------- 1117
+ GP A + + KAG +L D+D FE +EAF+ +A K
Sbjct: 349 KDQLLLGPTYATPKVLEKAGLTLNDIDAFEFHEAFSGQILANFKAMDSDWFAQNYMGRKT 408
Query: 1118 ELGLNP-EKVNTEGGAIALGHPLGASGCRILV 1210
++G P EK N GG+++LGHP GA+GCR ++
Sbjct: 409 KVGSPPLEKFNNWGGSLSLGHPFGATGCRAML 440
>ref|XP_859620.1| PREDICTED: similar to hydroxyacyl dehydrogenase, subunit B isoform 4
[Canis familiaris].
Length = 410
Score = 155 bits (391), Expect = 1e-37
Identities = 120/358 (33%), Positives = 180/358 (50%), Gaps = 35/358 (9%)
Frame = +2
Query: 335 ASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP------ 496
A++GAG PA + M C S +A+ I G +VVAGG+E MS P
Sbjct: 55 AALGAGFSDKTPAHTVTMACISANQAMTTGVGLIASGQCDVVVAGGVELMSDVPIRHSRK 114
Query: 497 ---HLVRLRTGVRLGEA-ALTDSILCDGLTDAFH-------NYHMGITAENVAKKWQVSR 643
++ L LG+ +L + L+ + MG +A+ +A + VSR
Sbjct: 115 MRKMMLDLNKAKTLGQRLSLLSKFRLNFLSPELPAVAEFSTSETMGHSADRLAAAFAVSR 174
Query: 644 EDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLK 823
DQD A S +KAQ G +IVP V + VT+ D RP S+LE M+KLK
Sbjct: 175 ADQDEYALRSHSLAKKAQDEGLLS-DIVPFKVPGKDTVTK---DNGIRP-SSLEQMAKLK 229
Query: 824 PYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEPSI-MG 1000
P F+ GTVT AN+S + DGA+A+++M + +A G P A++ + +P +
Sbjct: 230 PAFIKP-YGTVTAANSSFLTDGASAMLIMAEEKALAMGYKPKAYLRDFVYVSQDPKDQLL 288
Query: 1001 TGPIPAIKQAVAKAGWSLEDVDIFEINEAFAAVSVAIVK----------------ELGLN 1132
GP A + + KAG +L D+D FE +EAF+ +A K ++G
Sbjct: 289 LGPTYATPKVLEKAGLTLNDIDAFEFHEAFSGQILANFKAMDSDWFAQNYMGRKTKVGSP 348
Query: 1133 P-EKVNTEGGAIALGHPLGASGCRILVTLLHTMERKGCQRGVTALCIGGGMGIAMCVQ 1303
P EK N GG+++LGHP GA+GCR+++ + + ++G Q G+ A C GG G AM V+
Sbjct: 349 PLEKFNNWGGSLSLGHPFGATGCRLVMAAANRLRKEGGQYGLVAACAAGGQGHAMIVE 406
>ref|XP_865177.1| PREDICTED: similar to hydroxyacyl-Coenzyme A
dehydrogenase/3-ketoacyl-Coenzyme A
thiolase/enoyl-Coenzyme A hydratase (trifunctional
protein), beta subunit isoform 2 [Canis familiaris].
Length = 423
Score = 151 bits (382), Expect = 1e-36
Identities = 125/392 (31%), Positives = 187/392 (47%), Gaps = 35/392 (8%)
Frame = +2
Query: 140 VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 319
+V+V R + + HDL +L R NV V +IFG V+
Sbjct: 38 IVVVDGVRIPFLQSGTSYKDLMPHDLARAAFSGLLHRTNVSKDVVDYIIFGTVIQEVKTS 97
Query: 320 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP- 496
N R+A++GAG PA + M C S +A+ I G +VVAGG+E MS P
Sbjct: 98 NVAREAALGAGFSDKTPAHTVTMACISANQAMITGVGLIASGQCDVVVAGGVELMSDVPI 157
Query: 497 --------HLVRLRTGVRLGE-AALTDSILCDGLT-------DAFHNYHMGITAENVAKK 628
++ L LG+ +L + L+ + + MG +A+ +A
Sbjct: 158 RHSRKIRKMMLDLNKAKTLGQRLSLLSKFRLNFLSPELPAVAEFSTSETMGHSADRLAAA 217
Query: 629 WQVSREDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEA 808
+ VSR DQD A S +KAQ G +IVP V + VT+ D RP S+LE
Sbjct: 218 FAVSRADQDEYALRSHSLAKKAQDEGLL-SDIVPFKVPGKDTVTK---DNDIRP-SSLEQ 272
Query: 809 MSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEP 988
M+KLKP F+ GTVT AN+S + DGA+A+++M + +A G A++ + +P
Sbjct: 273 MAKLKPAFIKP-YGTVTTANSSFLTDGASAMLIMAEEKALAMGYKLKAYLRDFVYVSQDP 331
Query: 989 -SIMGTGPIPAIKQAVAKAGWSLEDVDIFEINEAFAAVSVAIVK---------------- 1117
+ GP A + + KAG +L D+D FE +EAF+ +A K
Sbjct: 332 KDQLLLGPTYATPKVLEKAGLTLNDIDAFEFHEAFSGQILANFKAMDSDWFAQNYMGRKT 391
Query: 1118 ELGLNP-EKVNTEGGAIALGHPLGASGCRILV 1210
++G P EK N GG+++LGHP GA+GCR ++
Sbjct: 392 KVGSPPLEKFNNWGGSLSLGHPFGATGCRAML 423
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 57,641,074
Number of extensions: 1539116
Number of successful extensions: 5564
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 5513
Number of HSP's successfully gapped: 21
Length of query: 510
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 403
Effective length of database: 15,307,552
Effective search space: 6168943456
Effective search space used: 6168943456
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007730
(1530 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033364.2| acetyl-CoA acetyltransferase, cytosolic [Mus mu... 689 0.0
Alignment gi|NP_694791.2| acetyl-Coenzyme A acetyltransferase 3 [Mus musc... 678 0.0
Alignment gi|NP_803421.1| 3-ketoacyl-CoA thiolase, mitochondrial [Mus mus... 299 3e-81
Alignment gi|NP_659033.1| acetyl-CoA acetyltransferase, mitochondrial pre... 291 9e-79
Alignment gi|NP_666342.1| 3-ketoacyl-CoA thiolase B, peroxisomal precurso... 249 5e-66
Alignment gi|NP_570934.1| 3-ketoacyl-CoA thiolase A, peroxisomal precurso... 249 5e-66
Alignment gi|NP_663533.1| trifunctional enzyme subunit beta, mitochondria... 178 9e-45
Alignment gi|XP_003086283.1| PREDICTED: trifunctional enzyme subunit beta... 140 2e-33
Alignment gi|NP_035457.1| non-specific lipid-transfer protein [Mus muscul... 54 3e-07
>ref|NP_033364.2| acetyl-CoA acetyltransferase, cytosolic [Mus musculus].
Length = 397
Score = 689 bits (1778), Expect = 0.0
Identities = 344/397 (86%), Positives = 365/397 (91%)
Frame = +2
Query: 119 MSAGSDPVVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHV 298
M+AGSDPVVIVSAART IGSFNGALSTVPVH++G+TVI+EVL+RA V P+EVSEVIFGHV
Sbjct: 1 MNAGSDPVVIVSAARTAIGSFNGALSTVPVHEMGTTVIKEVLQRAKVAPEEVSEVIFGHV 60
Query: 299 LTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGME 478
LTAGCGQNP RQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQ+I +GDS IVVAGGME
Sbjct: 61 LTAGCGQNPTRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQSIAMGDSTIVVAGGME 120
Query: 479 NMSKAPHLVRLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDR 658
NMSKAPHL LRTGVR+GE L DSILCDGLTDAFHNYHMGITAENVAKKWQVSRE QD+
Sbjct: 121 NMSKAPHLTHLRTGVRMGEVPLADSILCDGLTDAFHNYHMGITAENVAKKWQVSREAQDK 180
Query: 659 LAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLT 838
+A LSQ+R E AQKAGHFDKEIVPV VSSRKG+TEVK DEFPR GS LEAM KLKPYFLT
Sbjct: 181 VAVLSQNRAEHAQKAGHFDKEIVPVLVSSRKGLTEVKIDEFPRHGSNLEAMGKLKPYFLT 240
Query: 839 DGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEPSIMGTGPIPA 1018
DGTGTVTPANASG+NDGAAAVVLMKK+EAE R L PLA IVSWSQAGVEPS+MG GPIPA
Sbjct: 241 DGTGTVTPANASGMNDGAAAVVLMKKTEAERRMLKPLARIVSWSQAGVEPSVMGVGPIPA 300
Query: 1019 IKQAVAKAGWSLEDVDIFEINEAFAAVSVAIVKELGLNPEKVNTEGGAIALGHPLGASGC 1198
IKQAVAKAGWSLEDVD+FEINEAFAAVS AI KELGLNPEKVN +GGAIALGHPLGASGC
Sbjct: 301 IKQAVAKAGWSLEDVDLFEINEAFAAVSAAIAKELGLNPEKVNIDGGAIALGHPLGASGC 360
Query: 1199 RILVTLLHTMERKGCQRGVTALCIGGGMGIAMCVQRG 1309
RILVTLLHT+ER G RGV ALCIGGGMG+AMCVQRG
Sbjct: 361 RILVTLLHTLERVGGTRGVAALCIGGGMGVAMCVQRG 397
>ref|NP_694791.2| acetyl-Coenzyme A acetyltransferase 3 [Mus musculus].
Length = 397
Score = 678 bits (1750), Expect = 0.0
Identities = 339/397 (85%), Positives = 362/397 (91%)
Frame = +2
Query: 119 MSAGSDPVVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHV 298
M+ SDPVVIVSAART IGSFNGALSTVPVH++G+TVI+EVL+RA V P+EVSEVIFGHV
Sbjct: 1 MNTRSDPVVIVSAARTAIGSFNGALSTVPVHEMGTTVIKEVLQRAKVAPEEVSEVIFGHV 60
Query: 299 LTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGME 478
LTAGCGQNP RQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQ+I +GDS IVVAGGME
Sbjct: 61 LTAGCGQNPTRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQSIAMGDSTIVVAGGME 120
Query: 479 NMSKAPHLVRLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDR 658
NMSKAPHL LRTGVR+GE L DSILCDGLTDAFHNYHMGITAENVAKKWQVSRE QD+
Sbjct: 121 NMSKAPHLTHLRTGVRVGEVPLADSILCDGLTDAFHNYHMGITAENVAKKWQVSREAQDK 180
Query: 659 LAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLT 838
+A LSQ+R E AQKAGHFDKEIVPV VSSRKG+TEVK DEFPR GS LEAM KLKPYFLT
Sbjct: 181 VAVLSQNRAEHAQKAGHFDKEIVPVLVSSRKGLTEVKIDEFPRHGSNLEAMGKLKPYFLT 240
Query: 839 DGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEPSIMGTGPIPA 1018
DGTGTVT ANA+G+NDGAAAVVLMKK+EAE R L PLA IVSWSQAGVEPS+MG GPIPA
Sbjct: 241 DGTGTVTTANATGMNDGAAAVVLMKKTEAERRMLKPLARIVSWSQAGVEPSVMGVGPIPA 300
Query: 1019 IKQAVAKAGWSLEDVDIFEINEAFAAVSVAIVKELGLNPEKVNTEGGAIALGHPLGASGC 1198
IKQAVAKAGWSLEDVD+FEINEA+AA+SVAI KELGLNPEKVN GGAIALGHPLGASGC
Sbjct: 301 IKQAVAKAGWSLEDVDLFEINEAYAALSVAIAKELGLNPEKVNINGGAIALGHPLGASGC 360
Query: 1199 RILVTLLHTMERKGCQRGVTALCIGGGMGIAMCVQRG 1309
RILVTLLHT+ER G RGV ALCIGGGMG+AMCVQRG
Sbjct: 361 RILVTLLHTLERVGGTRGVAALCIGGGMGVAMCVQRG 397
>ref|NP_803421.1| 3-ketoacyl-CoA thiolase, mitochondrial [Mus musculus].
Length = 397
Score = 299 bits (766), Expect = 3e-81
Identities = 161/390 (41%), Positives = 233/390 (59%), Gaps = 2/390 (0%)
Frame = +2
Query: 140 VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 319
V IV+A RT G++ G L DL R L V P+ + VI G+V+ +
Sbjct: 7 VFIVAAKRTPFGAYGGLLKDFSATDLTEFAARAALSAGKVPPETIDSVIVGNVMQSSSDA 66
Query: 320 NPV-RQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP 496
+ R + G+P A + +CGSG +++ Q I D+ +V+ GG E+MS++P
Sbjct: 67 AYLARHVGLRVGVPTETGALTLNRLCGSGFQSIVSGCQEICSKDAEVVLCGGTESMSQSP 126
Query: 497 HLVR-LRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRLAALS 673
+ VR +R G + G + L GLTD MG+TAEN+A K+ +SRED DR A S
Sbjct: 127 YCVRNVRFGTKFGLDLKLEDTLWAGLTDQHVKLPMGMTAENLAAKYNISREDCDRYALQS 186
Query: 674 QDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLTDGTGT 853
Q R + A +AG+F++E+ P+ V ++KG ++ DE RP +TLE + KL F DGT
Sbjct: 187 QQRWKAANEAGYFNEEMAPIEVKTKKGKQTMQVDEHARPQTTLEQLQKLPSVFKKDGT-- 244
Query: 854 VTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEPSIMGTGPIPAIKQAV 1033
VT NASG++DGA AV++ + + TPLA +V + +G +P+IMG GP+PAI A+
Sbjct: 245 VTAGNASGVSDGAGAVIIASEDAVKKHNFTPLARVVGYFVSGCDPTIMGIGPVPAINGAL 304
Query: 1034 AKAGWSLEDVDIFEINEAFAAVSVAIVKELGLNPEKVNTEGGAIALGHPLGASGCRILVT 1213
KAG SL+D+D+ ++NEAFA +++ K L L+P K N GGAIALGHPLG SG RI
Sbjct: 305 KKAGLSLKDMDLIDVNEAFAPQFLSVQKALDLDPSKTNVSGGAIALGHPLGGSGSRITAH 364
Query: 1214 LLHTMERKGCQRGVTALCIGGGMGIAMCVQ 1303
L+H + R+G + V + CIGGG GIA+ +Q
Sbjct: 365 LVHELRRRGGKYAVGSACIGGGQGIALIIQ 394
>ref|NP_659033.1| acetyl-CoA acetyltransferase, mitochondrial precursor [Mus musculus].
Length = 424
Score = 291 bits (745), Expect = 9e-79
Identities = 164/405 (40%), Positives = 246/405 (60%), Gaps = 6/405 (1%)
Frame = +2
Query: 110 CRRMSAGSDP----VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVS 277
C S S P VVIVSA RT IGSF G+L++ P LG+ I+ +++A + +EV
Sbjct: 25 CLERSYASKPTLNEVVIVSAIRTPIGSFLGSLASQPATKLGTAAIQGAIEKAGIPKEEVK 84
Query: 278 EVIFGHVLTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRI 457
EV G+V+ G GQ P RQA++GAG+P S P + +C SG+KA+ +A+Q++ G +
Sbjct: 85 EVYMGNVIQGGEGQAPTRQATLGAGLPISTPCTTVNKVCASGMKAIMMASQSLMCGHQDV 144
Query: 458 VVAGGMENMSKAPHLVRLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQV 637
+VAGGME+MS P+++ R G L D I+ DGLTD ++ HMG AEN AKK +
Sbjct: 145 MVAGGMESMSNVPYVMS-RGATPYGGVKLEDLIVKDGLTDVYNKIHMGNCAENTAKKMNI 203
Query: 638 SREDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVS--SRKGVTEVKTDEFPRPGSTLEAM 811
SR++QD A S R+++A AG F EI P+ +S + V + +E+ R +
Sbjct: 204 SRQEQDTYALSSYTRSKEAWDAGKFASEITPITISVKGKPDVVVKEDEEYKRVD--FSKV 261
Query: 812 SKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEPS 991
KLK F + GT+T ANAS +NDGAAA+VLM A+ + PLA I +++ A V+P
Sbjct: 262 PKLKTVFQKEN-GTITAANASTLNDGAAALVLMTAEAAQRLNVKPLARIAAFADAAVDPI 320
Query: 992 IMGTGPIPAIKQAVAKAGWSLEDVDIFEINEAFAAVSVAIVKELGLNPEKVNTEGGAIAL 1171
P A+ + + AG ED+ ++E+NEAF+ V +A +K L ++P+KVN GGA++L
Sbjct: 321 DFPLAPAYAVPKVLKYAGLKKEDIAMWEVNEAFSVVVLANIKMLEIDPQKVNIHGGAVSL 380
Query: 1172 GHPLGASGCRILVTLLHTMERKGCQRGVTALCIGGGMGIAMCVQR 1306
GHP+G SG RI+V + H + K + G+ ++C GGG A+ +++
Sbjct: 381 GHPIGMSGARIVVHMAHAL--KPGEFGLASICNGGGGASALLIEK 423
>ref|NP_666342.1| 3-ketoacyl-CoA thiolase B, peroxisomal precursor [Mus musculus].
Length = 424
Score = 249 bits (635), Expect = 5e-66
Identities = 163/399 (40%), Positives = 230/399 (57%), Gaps = 8/399 (2%)
Frame = +2
Query: 119 MSAGSDPVVIVSAARTVIG-SFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGH 295
+ A + VV+V RT IG + G +L S V+ VL+ + P+++ ++ G+
Sbjct: 31 LQASASDVVVVHGRRTPIGRASRGCFKDTTPDELLSAVLTAVLQDVKLKPEQLGDISVGN 90
Query: 296 VLTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGM 475
VL G G R A +GIP +VP + C SGL+AV A I G I +A G+
Sbjct: 91 VLQPGAGAIMARIAQFLSGIPETVPLSTVNRQCSSGLQAVANIAGGIRNGSYDIGMACGV 150
Query: 476 ENMSKAPHLVRLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQD 655
E+M+ + RL E L MGIT+ENVA+++ VSR+ QD
Sbjct: 151 ESMTLSQRGNHGNISSRLLENEKARDCLIP----------MGITSENVAERFGVSRQKQD 200
Query: 656 RLAALSQDRTEKAQKAGHFDKEIVPVFVS------SRKGVTEVKTDEFPRPGSTLEAMSK 817
A SQ + AQ G F EIVPV + +K +T V DE RP +T++ ++K
Sbjct: 201 AFALASQQKAASAQSRGCFHAEIVPVTTTVLNDKGDKKTIT-VSQDEGVRPSTTMQGLAK 259
Query: 818 LKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEPSIM 997
LKP F DG G+ T N+S ++DGAAAV+L ++S+AE GL L + S++ GV P +M
Sbjct: 260 LKPAF-KDG-GSTTAGNSSQVSDGAAAVLLARRSKAEELGLPILGVLRSYAVVGVPPDVM 317
Query: 998 GTGPIPAIKQAVAKAGWSLEDVDIFEINEAFAAVSVAIVKELGLNPEKVNTEGGAIALGH 1177
G GP AI A+ KAG ++ D+DIFEINEAFA+ +V V++LG+ EKVN GGAIALGH
Sbjct: 318 GIGPAYAIPAALQKAGLTVNDIDIFEINEAFASQAVYCVEKLGIPAEKVNPLGGAIALGH 377
Query: 1178 PLGASGCRILVTLLHTMERKGCQR-GVTALCIGGGMGIA 1291
PLG +G R +VTLL+ ++R+G + GV ++CIG GMG A
Sbjct: 378 PLGCTGARQVVTLLNELKRRGRRAYGVVSMCIGTGMGAA 416
>ref|NP_570934.1| 3-ketoacyl-CoA thiolase A, peroxisomal precursor [Mus musculus].
Length = 424
Score = 249 bits (635), Expect = 5e-66
Identities = 166/398 (41%), Positives = 234/398 (58%), Gaps = 9/398 (2%)
Frame = +2
Query: 125 AGSDPVVIVSAARTVIG--SFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHV 298
A + VV+V RT IG S G +T P +L S V+ VL+ + P+++ ++ G+V
Sbjct: 33 ASASDVVVVHGRRTPIGRASRGGFKNTTP-DELLSAVLTAVLQDVRLKPEQLGDISVGNV 91
Query: 299 LTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGME 478
L G G R A +GIP +VP + C SGL+AV A I G I +A G+E
Sbjct: 92 LEPGAGAVMARIAQFLSGIPETVPLSTVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVE 151
Query: 479 NMSKAPHLVRLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDR 658
+MS L + + L D LT MG+T+ENVA+++ +SR+ QD
Sbjct: 152 SMS----LSGMGNPGNISSRLLESEKARDCLTP------MGMTSENVAERFGISRQKQDD 201
Query: 659 LAALSQDRTEKAQKAGHFDKEIVPVFVS------SRKGVTEVKTDEFPRPGSTLEAMSKL 820
A SQ + AQ G F EIVPV + +K +T V DE RP +T++ ++KL
Sbjct: 202 FALASQQKAASAQSRGCFRAEIVPVTTTVLDDKGDKKTIT-VSQDEGVRPSTTMQGLAKL 260
Query: 821 KPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEPSIMG 1000
KP F DG G+ T N+S ++DGAAAV+L ++S+AE GL L + S++ GV P +MG
Sbjct: 261 KPAF-KDG-GSTTAGNSSQVSDGAAAVLLARRSKAEELGLPILGVLRSYAVVGVPPDVMG 318
Query: 1001 TGPIPAIKQAVAKAGWSLEDVDIFEINEAFAAVSVAIVKELGLNPEKVNTEGGAIALGHP 1180
GP AI A+ KAG ++ D+DIFEINEAFA+ +V V++LG+ EKVN GGAIALGHP
Sbjct: 319 IGPAYAIPAALQKAGLTVNDIDIFEINEAFASQAVYCVEKLGIPAEKVNPLGGAIALGHP 378
Query: 1181 LGASGCRILVTLLHTMERKGCQR-GVTALCIGGGMGIA 1291
LG +G R +VTLL+ ++R+G + GV ++CIG GMG A
Sbjct: 379 LGCTGARQVVTLLNELKRRGRRAYGVVSMCIGTGMGAA 416
>ref|NP_663533.1| trifunctional enzyme subunit beta, mitochondrial precursor [Mus
musculus].
Length = 475
Score = 178 bits (452), Expect = 9e-45
Identities = 136/423 (32%), Positives = 206/423 (48%), Gaps = 35/423 (8%)
Frame = +2
Query: 140 VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 319
+V+V R + + HDL + +L R N+ V +IFG V+
Sbjct: 55 IVVVEGVRIPFLLSGTSYKDLMPHDLARAALSGLLHRTNIPKDVVDYIIFGTVIQEVKTS 114
Query: 320 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP- 496
N R+A++GAG PA + M C S +A+ A I G +VVAGG+E MS P
Sbjct: 115 NVAREAALGAGFSDKTPAHTVTMACISSNQAMTTAVGLIASGQCDVVVAGGVELMSDVPI 174
Query: 497 --------HLVRLRTGVRLGE-AALTDSILCDGLT-------DAFHNYHMGITAENVAKK 628
++ L LG+ +L + L+ + N MG +A+ +A
Sbjct: 175 RHSRNMRKMMLDLNKAKTLGQRLSLLSKFRLNFLSPELPAVAEFSTNETMGHSADRLAAA 234
Query: 629 WQVSREDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEA 808
+ VSR +QD A S +KAQ GH +IVP V + VT+ D RP S+LE
Sbjct: 235 FAVSRMEQDEYALRSHSLAKKAQDEGHL-SDIVPFKVPGKDTVTK---DNGIRP-SSLEQ 289
Query: 809 MSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEP 988
M+KLKP F+ GTVT AN+S + DGA+A+++M + A G P A++ + +P
Sbjct: 290 MAKLKPAFIKP-YGTVTAANSSFLTDGASAMLIMSEDRALAMGYKPKAYLRDFIYVSQDP 348
Query: 989 -SIMGTGPIPAIKQAVAKAGWSLEDVDIFEINEAFAAVSVAIVK---------------- 1117
+ GP A + + KAG ++ D+D FE +EAF+ +A K
Sbjct: 349 KDQLLLGPTYATPKVLEKAGLTMNDIDAFEFHEAFSGQILANFKAMDSDWFAQNYMGRKT 408
Query: 1118 ELGLNP-EKVNTEGGAIALGHPLGASGCRILVTLLHTMERKGCQRGVTALCIGGGMGIAM 1294
++G P EK N GG+++LGHP GA+GCR+++ + + + G Q + A C GG G AM
Sbjct: 409 KVGSPPLEKFNIWGGSLSLGHPFGATGCRLVMAAANRLRKDGGQYALVAACAAGGQGHAM 468
Query: 1295 CVQ 1303
V+
Sbjct: 469 IVE 471
>ref|XP_003086283.1| PREDICTED: trifunctional enzyme subunit beta, mitochondrial-like [Mus
musculus].
Length = 330
Score = 140 bits (354), Expect = 2e-33
Identities = 110/329 (33%), Positives = 164/329 (49%), Gaps = 35/329 (10%)
Frame = +2
Query: 422 AAQAIGVGDSRIVVAGGMENMSKAP---------HLVRLRTGVRLGEA-ALTDSILCDGL 571
A I G +VVAGG+E MS P ++ L LG+ +L + L
Sbjct: 4 AVGLIASGQCDVVVAGGVELMSDVPIRHSRNMRKMMLDLNKAKTLGQRLSLLSKFRLNFL 63
Query: 572 TDAFH-------NYHMGITAENVAKKWQVSREDQDRLAALSQDRTEKAQKAGHFDKEIVP 730
+ N MG +A+ +A + VSR +QD A S +KAQ GH +IVP
Sbjct: 64 SPELPAVAEFSTNETMGHSADRLAAAFAVSRMEQDEYALHSHSLAKKAQDEGHLS-DIVP 122
Query: 731 VFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLTDGTGTVTPANASGINDGAAAVVLM 910
V + VT+ D RP S+LE M+KLKP F+ GTVT AN+S + DGA+A+++M
Sbjct: 123 FKVPGKDTVTK---DNGIRP-SSLEQMAKLKPAFIKP-YGTVTAANSSFLTDGASAMLIM 177
Query: 911 KKSEAENRGLTPLAHIVSWSQAGVEPSI-MGTGPIPAIKQAVAKAGWSLEDVDIFEINEA 1087
+ A G P A++ + +P + GP A + + KAG ++ D+D FE +EA
Sbjct: 178 SEDRALAMGYKPKAYLRDFIYVSQDPKDQLLLGPTYATPKVLEKAGLTMNDIDAFEFHEA 237
Query: 1088 FAAVSVAIVK----------------ELGLNP-EKVNTEGGAIALGHPLGASGCRILVTL 1216
F+ +A K ++G P EK N GG+++LGHP GA+GCR+++
Sbjct: 238 FSGQILANFKAMDSDWFAQNYMGRKTKVGSPPLEKFNIWGGSLSLGHPFGATGCRLVMAA 297
Query: 1217 LHTMERKGCQRGVTALCIGGGMGIAMCVQ 1303
+ + + G Q + A C GG G AM V+
Sbjct: 298 ANRLRKDGGQYALVAACAAGGQGHAMIVE 326
>ref|NP_035457.1| non-specific lipid-transfer protein [Mus musculus].
Length = 547
Score = 54.3 bits (129), Expect = 3e-07
Identities = 82/359 (22%), Positives = 132/359 (36%), Gaps = 31/359 (8%)
Frame = +2
Query: 212 DLGSTVIREVLKRANVDPKEVSEVIFGHVL-TAGCGQNPVRQASVGAGIPYSVPAWSCQM 388
D+ ++ L+ A + V + G+V + GQ + + GIP +
Sbjct: 37 DMAKEAGQKALEDAQIPYSAVEQACVGYVYGDSTSGQRAIYHSLGLTGIPII----NVNN 92
Query: 389 ICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAPHLVRLRTGVRLGEAALTDSILCDG 568
C +G A+ +A Q I G + V+A G E M + G + + +
Sbjct: 93 NCSTGSTALFMAHQLIQGGLANCVLALGFEKMERGS------IGTKFSDRTTPTDKHIEV 146
Query: 569 LTDAFHNYHMGITAENVAKKWQVSREDQDRLAALSQDRTEK-AQKAGHFDKEIVPVFVSS 745
L D + G++A + + ++ EK K HF K S
Sbjct: 147 LIDKY-----GLSAHPITPQM---------FGYAGKEHMEKYGTKVEHFAKIGWKNHKHS 192
Query: 746 RKGVTEVKTDEFPRPGSTLEAMSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEA 925
DE+ +LE + K KP F +T +DGAAA +L +
Sbjct: 193 VNNTYSQFQDEY-----SLEEVMKSKPVF-----DFLTILQCCPTSDGAAAAILSSEEFV 242
Query: 926 ENRGLTPLA-HIVSWSQAGVEPSIMGTGPI----------PAIKQAVAKAGWSLEDVDIF 1072
+ GL A IV+ PS I A ++ K+G + DVD+
Sbjct: 243 QQYGLQSKAVEIVAQEMMTDLPSTFEEKSIIKVVGYDMSKEAARRCYEKSGLTPNDVDVI 302
Query: 1073 EINEAFAAVSVAIVKELGLNPE------------------KVNTEGGAIALGHPLGASG 1195
E+++ F+ + + LGL PE +N GG I+ GHPLGA+G
Sbjct: 303 ELHDCFSVNELITYEALGLCPEGQGGTLVDRGDNTYGGKWVINPSGGLISKGHPLGATG 361
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,026,290
Number of extensions: 1283846
Number of successful extensions: 4482
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4447
Number of HSP's successfully gapped: 9
Length of query: 510
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 404
Effective length of database: 12,433,743
Effective search space: 5023232172
Effective search space used: 5023232172
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007730
(1530 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928380.1| PREDICTED: acetyl-CoA acetyltransferase, cyt... 783 0.0
Alignment gi|NP_001161110.1| 3-ketoacyl-CoA thiolase, mitochondrial [Sus ... 310 1e-84
Alignment gi|XP_003357324.1| PREDICTED: acetyl-CoA acetyltransferase, mit... 296 2e-80
Alignment gi|XP_003132151.1| PREDICTED: 3-ketoacyl-CoA thiolase A, peroxi... 246 2e-65
Alignment gi|XP_003132161.2| PREDICTED: 3-ketoacyl-CoA thiolase, peroxiso... 176 4e-44
Alignment gi|NP_999131.1| long-chain 3-ketoacyl-CoA thiolase [Sus scrofa]. 174 2e-43
Alignment gi|XP_003132152.1| PREDICTED: 3-ketoacyl-CoA thiolase A, peroxi... 123 3e-28
>ref|XP_001928380.1| PREDICTED: acetyl-CoA acetyltransferase, cytosolic [Sus scrofa].
Length = 397
Score = 783 bits (2022), Expect = 0.0
Identities = 396/397 (99%), Positives = 396/397 (99%)
Frame = +2
Query: 119 MSAGSDPVVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHV 298
MSAGSDPVVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHV
Sbjct: 1 MSAGSDPVVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHV 60
Query: 299 LTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGME 478
LTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGME
Sbjct: 61 LTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGME 120
Query: 479 NMSKAPHLVRLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDR 658
NMSKAPHLVRLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDR
Sbjct: 121 NMSKAPHLVRLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDR 180
Query: 659 LAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLT 838
LAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLT
Sbjct: 181 LAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLT 240
Query: 839 DGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEPSIMGTGPIPA 1018
DGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEPSIMGTGPIPA
Sbjct: 241 DGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEPSIMGTGPIPA 300
Query: 1019 IKQAVAKAGWSLEDVDIFEINEAFAAVSVAIVKELGLNPEKVNTEGGAIALGHPLGASGC 1198
IKQAVAKAGWSLEDVDIFEINEAFAAVSVAIVKELGLNPEKVNTEGGAIALGHPLGASGC
Sbjct: 301 IKQAVAKAGWSLEDVDIFEINEAFAAVSVAIVKELGLNPEKVNTEGGAIALGHPLGASGC 360
Query: 1199 RILVTLLHTMERKGCQRGVTALCIGGGMGIAMCVQRG 1309
RILVTLLHTMERKGCQRGV ALCIGGGMGIAMCVQRG
Sbjct: 361 RILVTLLHTMERKGCQRGVAALCIGGGMGIAMCVQRG 397
>ref|NP_001161110.1| 3-ketoacyl-CoA thiolase, mitochondrial [Sus scrofa].
Length = 397
Score = 310 bits (794), Expect = 1e-84
Identities = 170/390 (43%), Positives = 236/390 (60%), Gaps = 2/390 (0%)
Frame = +2
Query: 140 VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 319
V IV+A RT G+F G L DL R L NV P+ + VI G+V+ +
Sbjct: 7 VFIVAAKRTPFGAFGGLLKDFTATDLTEFAARAALSAGNVSPETIDSVIVGNVMQSSSDA 66
Query: 320 NPV-RQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP 496
+ R + GIP PA + +CGSG +++ Q I D+++V+ GG E+MS+AP
Sbjct: 67 IYLARHVGLRVGIPKETPALTVNRLCGSGFQSIVNGCQEICAKDAKVVLCGGTESMSQAP 126
Query: 497 HLVR-LRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRLAALS 673
+ VR +R G +LG + L GLTD M ITAEN+A K ++SRE+ D+ A S
Sbjct: 127 YCVRNIRFGTKLGLDLKLEDSLWTGLTDQHIQIPMAITAENLAAKHKISREECDKYALQS 186
Query: 674 QDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLTDGTGT 853
Q R + A AG+F+ E+ P+ V ++KG ++ DE RP +TLE +SKL P F +GT
Sbjct: 187 QQRWKAANDAGYFNNEMAPIEVKTKKGKQTMQVDEHARPQTTLEQLSKLPPVFKKEGT-- 244
Query: 854 VTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEPSIMGTGPIPAIKQAV 1033
VT NASGI+DGA AV++ + + TPLA IV + +G +PSIMG GP+PAI A+
Sbjct: 245 VTAGNASGISDGAGAVIIASEDAVKKHNFTPLARIVGYFASGCDPSIMGIGPVPAITGAL 304
Query: 1034 AKAGWSLEDVDIFEINEAFAAVSVAIVKELGLNPEKVNTEGGAIALGHPLGASGCRILVT 1213
KAG SL+D+D+ E+NEAFA +A+ K L L+P K N GGAIALGHPLG SG RI
Sbjct: 305 KKAGLSLKDMDLVEVNEAFAPQYLAVEKSLDLDPSKTNVNGGAIALGHPLGGSGARITSH 364
Query: 1214 LLHTMERKGCQRGVTALCIGGGMGIAMCVQ 1303
L+H + R+G + V + CIGGG GIA+ ++
Sbjct: 365 LVHELRRRGKKYAVGSACIGGGQGIAIIIE 394
>ref|XP_003357324.1| PREDICTED: acetyl-CoA acetyltransferase, mitochondrial [Sus scrofa].
Length = 426
Score = 296 bits (759), Expect = 2e-80
Identities = 171/390 (43%), Positives = 242/390 (62%), Gaps = 1/390 (0%)
Frame = +2
Query: 140 VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 319
VVIVSA RT IGSF G+LS++P LGS I+ +++A + +EV EV G+VL G GQ
Sbjct: 41 VVIVSATRTPIGSFLGSLSSLPATKLGSIAIQGAIEKAGIPKEEVKEVYMGNVLQGGEGQ 100
Query: 320 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAPH 499
P RQA +GAG+P S P + +C SG+KA+ +A+Q + G ++VAGGME+MS P+
Sbjct: 101 APTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQNLMCGHQDVMVAGGMESMSNVPY 160
Query: 500 LVRLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRLAALSQD 679
++ T G L D I+ DGLTD ++ HMG AEN AKK + R++QD A S
Sbjct: 161 VMDRGT-TPYGGVKLEDLIVKDGLTDVYNKIHMGNCAENTAKKLNIPRDEQDTYAINSYT 219
Query: 680 RTEKAQKAGHFDKEIVPVFVSSR-KGVTEVKTDEFPRPGSTLEAMSKLKPYFLTDGTGTV 856
R++ A +AG F E++PV +S + K T VK DE + + KLK F + GTV
Sbjct: 220 RSKAAWEAGKFRSEVIPVTISVKGKPDTVVKEDEEYKRVD-FNKVPKLKTVFQKEN-GTV 277
Query: 857 TPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEPSIMGTGPIPAIKQAVA 1036
T ANAS +NDGAAAVVLM A+ + PLA I +++ A V+P P A+ + +
Sbjct: 278 TAANASTLNDGAAAVVLMTADAAKRLNVKPLARIAAFADAAVDPIDFPIAPAYAVPKVLK 337
Query: 1037 KAGWSLEDVDIFEINEAFAAVSVAIVKELGLNPEKVNTEGGAIALGHPLGASGCRILVTL 1216
AG EDV ++E+NEAF+ V +A +K L ++P+KVN GGA++LGHP+G SG RI+V L
Sbjct: 338 DAGLKKEDVTMWEVNEAFSVVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVVHL 397
Query: 1217 LHTMERKGCQRGVTALCIGGGMGIAMCVQR 1306
H + K + G+ ++C GGG AM +Q+
Sbjct: 398 AHAL--KQGEYGLASICNGGGGASAMLIQK 425
>ref|XP_003132151.1| PREDICTED: 3-ketoacyl-CoA thiolase A, peroxisomal isoform 1 [Sus
scrofa].
Length = 426
Score = 246 bits (628), Expect = 2e-65
Identities = 159/397 (40%), Positives = 227/397 (57%), Gaps = 8/397 (2%)
Frame = +2
Query: 125 AGSDPVVIVSAARTVIG-SFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVL 301
A ++ +V+V RT IG S G +L S V+ VL+ + P ++ ++ G+VL
Sbjct: 35 ASAEDIVVVHGRRTAIGRSGRGGFKDTTPDELLSAVMTAVLQDVKLSPAQLGDICVGNVL 94
Query: 302 TAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMEN 481
G G R A + IP +VP + C SGL+AV A I G I +A G+E+
Sbjct: 95 QPGAGAVMARIAQFLSDIPETVPLSTVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVES 154
Query: 482 MSKAPHLVRLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRL 661
M+ RL E L MGIT+ENVAK++ +SRE QD
Sbjct: 155 MTLGDRGNPGNISSRLVEKEKARDCLIP----------MGITSENVAKRFGISREKQDTF 204
Query: 662 AALSQDRTEKAQKAGHFDKEIVPVFVS------SRKGVTEVKTDEFPRPGSTLEAMSKLK 823
A SQ + +AQ G F EIVPV + + K +T V DE RP +T+E ++KLK
Sbjct: 205 ALASQQKAARAQSKGCFQAEIVPVTTTVYDDKGNEKSIT-VAQDEGIRPNTTMEGLAKLK 263
Query: 824 PYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEPSIMGT 1003
P F G+ T N+S ++DGAAA++L ++S+A+ GL L + S++ GV P IMG
Sbjct: 264 PAFKQGGS--TTAGNSSQVSDGAAALLLARRSKAKELGLPILGILRSYAVVGVPPDIMGI 321
Query: 1004 GPIPAIKQAVAKAGWSLEDVDIFEINEAFAAVSVAIVKELGLNPEKVNTEGGAIALGHPL 1183
GP AI A+ KAG +++D+DIFEINEAFA+ ++ V++L L PEKVN GGA+ALGHPL
Sbjct: 322 GPAYAIPVALEKAGLTVDDIDIFEINEAFASQALYCVEKLKLPPEKVNPLGGAVALGHPL 381
Query: 1184 GASGCRILVTLLHTMERKGCQR-GVTALCIGGGMGIA 1291
G +G R ++TLL+ ++R+G + GV ++CIG GMG A
Sbjct: 382 GCTGARQVITLLNELKRRGKRAYGVVSMCIGTGMGAA 418
>ref|XP_003132161.2| PREDICTED: 3-ketoacyl-CoA thiolase, peroxisomal-like [Sus scrofa].
Length = 390
Score = 176 bits (445), Expect = 4e-44
Identities = 142/410 (34%), Positives = 198/410 (48%), Gaps = 8/410 (1%)
Frame = +2
Query: 86 TSSGGARLCRRMSAGSDPVVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDP 265
T+ G RL R P + SAA + +L +L S V+ VL+ + P
Sbjct: 13 TALSGVRLGER----GFPGIPSSAASGGLSRPRFSLQDTTPDELLSAVMTAVLQDVKLSP 68
Query: 266 KEVSEVIFGHVLTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVG 445
++ ++ G+VL G G R A + IP +VP + C SGL+AV A I G
Sbjct: 69 AQLGDICVGNVLQPGAGAVMARIAQFLSDIPETVPLSTVNRQCSSGLQAVANIAGGIRNG 128
Query: 446 DSRIVVAGGMENMSKAPHLVRLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAK 625
I +A G+E+M+ RL E L MGIT+ENVAK
Sbjct: 129 SYDIGMACGVESMTLGDRGNPGNISSRLVEKEKARDCLIP----------MGITSENVAK 178
Query: 626 KWQVSREDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVS------SRKGVTEVKTDEFPR 787
++ +SRE QD A SQ + +AQ G F EIVPV + + K +T V DE R
Sbjct: 179 RFGISREKQDTFALASQQKAARAQSKGCFQAEIVPVTTTVYDDKGNEKSIT-VAQDEGIR 237
Query: 788 PGSTLEAMSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSW 967
P +T+E ++KLKP F G+ T N+S ++DGAAA++L ++S+A+ GL L + S+
Sbjct: 238 PNTTMEGLAKLKPAFKQGGS--TTAGNSSQVSDGAAALLLARRSKAKELGLPILGILRSY 295
Query: 968 SQAGVEPSIMGTGPIPAIKQAVAKAGWSLEDVDIFEINEAFAAVSVAIVKELGLNPEKVN 1147
+ GV P IMG GP AI A+ KAG +++D+DIFEINEAFA+
Sbjct: 296 AVVGVPPDIMGIGPAYAIPVALEKAGLTVDDIDIFEINEAFAS----------------- 338
Query: 1148 TEGGAIALGHPLGASGCRILVTLLHTMERKGCQR--GVTALCIGGGMGIA 1291
L G G IL L + R GV ++CIG GMG A
Sbjct: 339 ------QLSWARGELGDLILPFRLSHNQHIFFHRAYGVVSMCIGTGMGAA 382
>ref|NP_999131.1| long-chain 3-ketoacyl-CoA thiolase [Sus scrofa].
Length = 442
Score = 174 bits (440), Expect = 2e-43
Identities = 132/423 (31%), Positives = 205/423 (48%), Gaps = 35/423 (8%)
Frame = +2
Query: 140 VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 319
+V+V R + + HDL + +L R +V V ++FG V+
Sbjct: 22 IVVVDGVRIPFLQSGTSYKELMPHDLARAALLGLLHRTSVPKDVVDYLVFGTVIQEVKTS 81
Query: 320 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP- 496
N R+A++GAG PA + M C S +A+ I G +VVAGG+E MS P
Sbjct: 82 NVAREAALGAGFSDKTPAHTVTMACISSNQAMTTGVSLIASGQFDVVVAGGVELMSDIPI 141
Query: 497 --------HLVRLRTGVRLGEAALTDSIL--------CDGLTDAFHNYHMGITAENVAKK 628
++ L LG+ S + + + MG +A+ +A
Sbjct: 142 RHSRKMRKMMLDLNKAKTLGQRLSLISKFRLNFLSPELPAVAEFSTSETMGHSADRLAAA 201
Query: 629 WQVSREDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEA 808
+ VSR +QD A S +KAQ G ++VP V + V + D RP S+LE
Sbjct: 202 FAVSRSEQDEYALRSHSLAKKAQDEGLLS-DVVPFKVPGKDTVLK---DNGIRP-SSLEQ 256
Query: 809 MSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEP 988
M+KLKP F+ GTVT AN+S + DGA+AV++M + +A G P A++ + +P
Sbjct: 257 MAKLKPAFIKP-YGTVTAANSSFLTDGASAVLIMAEEKALAMGYKPKAYLRDFIYVSQDP 315
Query: 989 SI-MGTGPIPAIKQAVAKAGWSLEDVDIFEINEAFAAVSVAIVK---------------- 1117
+ GP A + + KAG ++ D+D FE +EAF+ +A +K
Sbjct: 316 KDQLLLGPTYATPKVLEKAGLTMNDIDAFEFHEAFSGQILANLKAMDSDWFAQNYMGRKA 375
Query: 1118 ELGLNP-EKVNTEGGAIALGHPLGASGCRILVTLLHTMERKGCQRGVTALCIGGGMGIAM 1294
++G P EK N GG+++LGHP GA+GCR+++T + + ++G Q G+ A C GG G AM
Sbjct: 376 KVGSPPLEKFNNWGGSLSLGHPFGATGCRLVMTAANRLRKEGGQYGLVAACAAGGQGHAM 435
Query: 1295 CVQ 1303
V+
Sbjct: 436 IVE 438
>ref|XP_003132152.1| PREDICTED: 3-ketoacyl-CoA thiolase A, peroxisomal isoform 2 [Sus
scrofa].
Length = 333
Score = 123 bits (308), Expect = 3e-28
Identities = 112/393 (28%), Positives = 169/393 (43%), Gaps = 4/393 (1%)
Frame = +2
Query: 125 AGSDPVVIVSAARTVIG-SFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVL 301
A ++ +V+V RT IG S G +L S V+ VL+ + P ++ ++ G+VL
Sbjct: 35 ASAEDIVVVHGRRTAIGRSGRGGFKDTTPDELLSAVMTAVLQDVKLSPAQLGDICVGNVL 94
Query: 302 TAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMEN 481
G G R A + IP +VP + C SGL+AV +AGG+ N
Sbjct: 95 QPGAGAVMARIAQFLSDIPETVPLSTVNRQCSSGLQAVAN-------------IAGGIRN 141
Query: 482 MSKAPHLVRLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRL 661
S +G A GIT+ENVAK++
Sbjct: 142 GS-----------YDIGMAC-------------------GITSENVAKRF---------- 161
Query: 662 AALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLTD 841
G++ K D F A ++ K F +
Sbjct: 162 ------------------------------GISREKQDTFALASQQKAARAQSKGCFQAE 191
Query: 842 GTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEPSIMGTGPI-PA 1018
T N+ + V A++ G+ P ++ G + PA
Sbjct: 192 IVPVTTTVYDDKGNEKSITV-------AQDEGIRP------------NTTMEGLAKLKPA 232
Query: 1019 IKQAVAK-AGWSLEDVDIFEINEAFAAVSVAIVKELGLNPEKVNTEGGAIALGHPLGASG 1195
KQ + AG +++D+DIFEINEAFA+ ++ V++L L PEKVN GGA+ALGHPLG +G
Sbjct: 233 FKQGGSTTAGLTVDDIDIFEINEAFASQALYCVEKLKLPPEKVNPLGGAVALGHPLGCTG 292
Query: 1196 CRILVTLLHTMERKGCQR-GVTALCIGGGMGIA 1291
R ++TLL+ ++R+G + GV ++CIG GMG A
Sbjct: 293 ARQVITLLNELKRRGKRAYGVVSMCIGTGMGAA 325
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 37,050,159
Number of extensions: 1194986
Number of successful extensions: 3358
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3339
Number of HSP's successfully gapped: 10
Length of query: 510
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 407
Effective length of database: 8,779,541
Effective search space: 3573273187
Effective search space used: 3573273187
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007730
(1530 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005882.2| acetyl-CoA acetyltransferase, cytosolic [Homo s... 696 0.0
Alignment gi|NP_006102.2| 3-ketoacyl-CoA thiolase, mitochondrial [Homo sa... 297 2e-80
Alignment gi|NP_000010.1| acetyl-CoA acetyltransferase, mitochondrial pre... 293 2e-79
Alignment gi|NP_001598.1| 3-ketoacyl-CoA thiolase, peroxisomal isoform a ... 249 5e-66
Alignment gi|NP_000174.1| trifunctional enzyme subunit beta, mitochondria... 177 2e-44
Alignment gi|NP_001123882.1| 3-ketoacyl-CoA thiolase, peroxisomal isoform... 149 5e-36
>ref|NP_005882.2| acetyl-CoA acetyltransferase, cytosolic [Homo sapiens].
Length = 397
Score = 696 bits (1797), Expect = 0.0
Identities = 349/396 (88%), Positives = 367/396 (92%)
Frame = +2
Query: 119 MSAGSDPVVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHV 298
M+AGSDPVVIVSAART+IGSFNGAL+ VPV DLGSTVI+EVLKRA V P++VSEVIFGHV
Sbjct: 1 MNAGSDPVVIVSAARTIIGSFNGALAAVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHV 60
Query: 299 LTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGME 478
L AGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLA Q+IG+GDS IVVAGGME
Sbjct: 61 LAAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAVQSIGIGDSSIVVAGGME 120
Query: 479 NMSKAPHLVRLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDR 658
NMSKAPHL LRTGV++GE LTDSILCDGLTDAFHN HMGITAENVAKKWQVSREDQD+
Sbjct: 121 NMSKAPHLAYLRTGVKIGEMPLTDSILCDGLTDAFHNCHMGITAENVAKKWQVSREDQDK 180
Query: 659 LAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLT 838
+A LSQ+RTE AQKAGHFDKEIVPV VS+RKG+ EVKTDEFPR GS +EAMSKLKPYFLT
Sbjct: 181 VAVLSQNRTENAQKAGHFDKEIVPVLVSTRKGLIEVKTDEFPRHGSNIEAMSKLKPYFLT 240
Query: 839 DGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEPSIMGTGPIPA 1018
DGTGTVTPANASGINDGAAAVVLMKKSEA+ RGLTPLA IVSWSQ GVEPSIMG GPIPA
Sbjct: 241 DGTGTVTPANASGINDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGVEPSIMGIGPIPA 300
Query: 1019 IKQAVAKAGWSLEDVDIFEINEAFAAVSVAIVKELGLNPEKVNTEGGAIALGHPLGASGC 1198
IKQAV KAGWSLEDVDIFEINEAFAAVS AIVKELGLNPEKVN EGGAIALGHPLGASGC
Sbjct: 301 IKQAVTKAGWSLEDVDIFEINEAFAAVSAAIVKELGLNPEKVNIEGGAIALGHPLGASGC 360
Query: 1199 RILVTLLHTMERKGCQRGVTALCIGGGMGIAMCVQR 1306
RILVTLLHT+ER G RGV ALCIGGGMGIAMCVQR
Sbjct: 361 RILVTLLHTLERMGRSRGVAALCIGGGMGIAMCVQR 396
>ref|NP_006102.2| 3-ketoacyl-CoA thiolase, mitochondrial [Homo sapiens].
Length = 397
Score = 297 bits (761), Expect = 2e-80
Identities = 164/390 (42%), Positives = 231/390 (59%), Gaps = 2/390 (0%)
Frame = +2
Query: 140 VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 319
V +V+A RT G++ G L DL + L V P+ V VI G+VL +
Sbjct: 7 VFVVAAKRTPFGAYGGLLKDFTATDLSEFAAKAALSAGKVSPETVDSVIMGNVLQSSSDA 66
Query: 320 NPV-RQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP 496
+ R + GIP PA + +CGSG +++ Q I V ++ +V+ GG E+MS+AP
Sbjct: 67 IYLARHVGLRVGIPKETPALTINRLCGSGFQSIVNGCQEICVKEAEVVLCGGTESMSQAP 126
Query: 497 HLVR-LRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRLAALS 673
+ VR +R G +LG + L LTD M +TAEN+A K ++SRE+ D+ A S
Sbjct: 127 YCVRNVRFGTKLGSDIKLEDSLWVSLTDQHVQLPMAMTAENLAVKHKISREECDKYALQS 186
Query: 674 QDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLTDGTGT 853
Q R + A AG+F+ E+ P+ V ++KG ++ DE RP +TLE + KL P F DGT
Sbjct: 187 QQRWKAANDAGYFNDEMAPIEVKTKKGKQTMQVDEHARPQTTLEQLQKLPPVFKKDGT-- 244
Query: 854 VTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEPSIMGTGPIPAIKQAV 1033
VT NASG+ DGA AV++ + + TPLA IV + +G +PSIMG GP+PAI A+
Sbjct: 245 VTAGNASGVADGAGAVIIASEDAVKKHNFTPLARIVGYFVSGCDPSIMGIGPVPAISGAL 304
Query: 1034 AKAGWSLEDVDIFEINEAFAAVSVAIVKELGLNPEKVNTEGGAIALGHPLGASGCRILVT 1213
KAG SL+D+D+ E+NEAFA +A+ + L L+ K N GGAIALGHPLG SG RI
Sbjct: 305 KKAGLSLKDMDLVEVNEAFAPQYLAVERSLDLDISKTNVNGGAIALGHPLGGSGSRITAH 364
Query: 1214 LLHTMERKGCQRGVTALCIGGGMGIAMCVQ 1303
L+H + R+G + V + CIGGG GIA+ +Q
Sbjct: 365 LVHELRRRGGKYAVGSACIGGGQGIAVIIQ 394
>ref|NP_000010.1| acetyl-CoA acetyltransferase, mitochondrial precursor [Homo sapiens].
Length = 427
Score = 293 bits (751), Expect = 2e-79
Identities = 164/389 (42%), Positives = 236/389 (60%)
Frame = +2
Query: 140 VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 319
VVIVSA RT IGSF G+LS +P LGS I+ +++A + +EV E G+VL G GQ
Sbjct: 42 VVIVSATRTPIGSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGEGQ 101
Query: 320 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAPH 499
P RQA +GAG+P S P + +C SG+KA+ +A+Q++ G ++VAGGME+MS P+
Sbjct: 102 APTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMSNVPY 161
Query: 500 LVRLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRLAALSQD 679
++ R G L D I+ DGLTD ++ HMG AEN AKK ++R +QD A S
Sbjct: 162 VMN-RGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAYAINSYT 220
Query: 680 RTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLTDGTGTVT 859
R++ A +AG F E++PV V+ + V ++ + KLK F + GTVT
Sbjct: 221 RSKAAWEAGKFGNEVIPVTVTVKGQPDVVVKEDEEYKRVDFSKVPKLKTVFQKEN-GTVT 279
Query: 860 PANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEPSIMGTGPIPAIKQAVAK 1039
ANAS +NDGAAA+VLM A+ +TPLA IV+++ A VEP P+ A +
Sbjct: 280 AANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAPVYAASMVLKD 339
Query: 1040 AGWSLEDVDIFEINEAFAAVSVAIVKELGLNPEKVNTEGGAIALGHPLGASGCRILVTLL 1219
G ED+ ++E+NEAF+ V +A +K L ++P+KVN GGA++LGHP+G SG RI+ L
Sbjct: 340 VGLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVGHLT 399
Query: 1220 HTMERKGCQRGVTALCIGGGMGIAMCVQR 1306
H + K + G+ ++C GGG AM +Q+
Sbjct: 400 HAL--KQGEYGLASICNGGGGASAMLIQK 426
>ref|NP_001598.1| 3-ketoacyl-CoA thiolase, peroxisomal isoform a [Homo sapiens].
Length = 424
Score = 249 bits (636), Expect = 5e-66
Identities = 165/398 (41%), Positives = 229/398 (57%), Gaps = 9/398 (2%)
Frame = +2
Query: 125 AGSDPVVIVSAARTVI--GSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHV 298
A + VV+V RT I G T P +L S V+ VLK N+ P+++ ++ G+V
Sbjct: 33 ASAADVVVVHGRRTAICRAGRGGFKDTTP-DELLSAVMTAVLKDVNLRPEQLGDICVGNV 91
Query: 299 LTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGME 478
L G G R A + IP +VP + C SGL+AV A I G I +A G+E
Sbjct: 92 LQPGAGAIMARIAQFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVE 151
Query: 479 NMSKAPHLVRLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDR 658
+MS A RL E L MGIT+ENVA+++ +SRE QD
Sbjct: 152 SMSLADRGNPGNITSRLMEKEKARDCLIP----------MGITSENVAERFGISREKQDT 201
Query: 659 LAALSQDRTEKAQKAGHFDKEIVPVFVS------SRKGVTEVKTDEFPRPGSTLEAMSKL 820
A SQ + +AQ G F EIVPV + +++ +T V DE RP +T+E ++KL
Sbjct: 202 FALASQQKAARAQSKGCFQAEIVPVTTTVHDDKGTKRSIT-VTQDEGIRPSTTMEGLAKL 260
Query: 821 KPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEPSIMG 1000
KP F DG+ T N+S ++DGAAA++L ++S+AE GL L + S++ GV P IMG
Sbjct: 261 KPAFKKDGS--TTAGNSSQVSDGAAAILLARRSKAEELGLPILGVLRSYAVVGVPPDIMG 318
Query: 1001 TGPIPAIKQAVAKAGWSLEDVDIFEINEAFAAVSVAIVKELGLNPEKVNTEGGAIALGHP 1180
GP AI A+ KAG ++ DVDIFEINEAFA+ + V++L L PEKVN GGA+ALGHP
Sbjct: 319 IGPAYAIPVALQKAGLTVSDVDIFEINEAFASQAAYCVEKLRLPPEKVNPLGGAVALGHP 378
Query: 1181 LGASGCRILVTLLHTMERKGCQR-GVTALCIGGGMGIA 1291
LG +G R ++TLL+ ++R+G + GV ++CIG GMG A
Sbjct: 379 LGCTGARQVITLLNELKRRGKRAYGVVSMCIGTGMGAA 416
>ref|NP_000174.1| trifunctional enzyme subunit beta, mitochondrial precursor [Homo
sapiens].
Length = 474
Score = 177 bits (449), Expect = 2e-44
Identities = 137/423 (32%), Positives = 211/423 (49%), Gaps = 35/423 (8%)
Frame = +2
Query: 140 VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 319
VV+V RT + + HDL + +L R +V + V +IFG V+
Sbjct: 54 VVVVDGVRTPFLLSGTSYKDLMPHDLARAALTGLLHRTSVPKEVVDYIIFGTVIQEVKTS 113
Query: 320 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP- 496
N R+A++GAG PA + M C S +A+ I G ++VAGG+E MS P
Sbjct: 114 NVAREAALGAGFSDKTPAHTVTMACISANQAMTTGVGLIASGQCDVIVAGGVELMSDVPI 173
Query: 497 -HLVRLR-----------TGVRLG-EAALTDSILCDGL---TDAFHNYHMGITAENVAKK 628
H ++R G RL + + L L ++ + MG +A+ +A
Sbjct: 174 RHSRKMRKLMLDLNKAKSMGQRLSLISKFRFNFLAPELPAVSEFSTSETMGHSADRLAAA 233
Query: 629 WQVSREDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEA 808
+ VSR +QD A S +KAQ G ++VP V + VT+ D RP S+LE
Sbjct: 234 FAVSRLEQDEYALRSHSLAKKAQDEGLL-SDVVPFKVPGKDTVTK---DNGIRP-SSLEQ 288
Query: 809 MSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEP 988
M+KLKP F+ GTVT AN+S + DGA+A+++M + +A G P A++ + +P
Sbjct: 289 MAKLKPAFIKP-YGTVTAANSSFLTDGASAMLIMAEEKALAMGYKPKAYLRDFMYVSQDP 347
Query: 989 -SIMGTGPIPAIKQAVAKAGWSLEDVDIFEINEAFAAVSVAIVK---------------- 1117
+ GP A + + KAG ++ D+D FE +EAF+ +A K
Sbjct: 348 KDQLLLGPTYATPKVLEKAGLTMNDIDAFEFHEAFSGQILANFKAMDSDWFAENYMGRKT 407
Query: 1118 ELGLNP-EKVNTEGGAIALGHPLGASGCRILVTLLHTMERKGCQRGVTALCIGGGMGIAM 1294
++GL P EK N GG+++LGHP GA+GCR+++ + + ++G Q G+ A C GG G AM
Sbjct: 408 KVGLPPLEKFNNWGGSLSLGHPFGATGCRLVMAAANRLRKEGGQYGLVAACAAGGQGHAM 467
Query: 1295 CVQ 1303
V+
Sbjct: 468 IVE 470
>ref|NP_001123882.1| 3-ketoacyl-CoA thiolase, peroxisomal isoform b [Homo sapiens].
Length = 331
Score = 149 bits (377), Expect = 5e-36
Identities = 125/392 (31%), Positives = 174/392 (44%), Gaps = 3/392 (0%)
Frame = +2
Query: 125 AGSDPVVIVSAARTVI--GSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHV 298
A + VV+V RT I G T P +L S V+ VLK N+ P+++ ++ G+V
Sbjct: 33 ASAADVVVVHGRRTAICRAGRGGFKDTTP-DELLSAVMTAVLKDVNLRPEQLGDICVGNV 91
Query: 299 LTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGME 478
L G G R A + IP +VP + C SGL+AV +AGG+
Sbjct: 92 LQPGAGAIMARIAQFLSDIPETVPLSTVNRQCSSGLQAVAS-------------IAGGIR 138
Query: 479 NMSKAPHLVRLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDR 658
N S +G A GIT+ENVA+++ +SRE QD
Sbjct: 139 NGS-----------YDIGMAC-------------------GITSENVAERFGISREKQDT 168
Query: 659 LAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLT 838
A SQ + +AQ G F EIVPV T V D+ + T+ ++P
Sbjct: 169 FALASQQKAARAQSKGCFQAEIVPV-------TTTVHDDKGTKRSITVTQDEGIRPSTTM 221
Query: 839 DGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEPSIMGTGPIPA 1018
+G + PA KK + GLT
Sbjct: 222 EGLAKLKPA--------------FKKDGSTTAGLT------------------------- 242
Query: 1019 IKQAVAKAGWSLEDVDIFEINEAFAAVSVAIVKELGLNPEKVNTEGGAIALGHPLGASGC 1198
+ DVDIFEINEAFA+ + V++L L PEKVN GGA+ALGHPLG +G
Sbjct: 243 -----------VSDVDIFEINEAFASQAAYCVEKLRLPPEKVNPLGGAVALGHPLGCTGA 291
Query: 1199 RILVTLLHTMERKGCQR-GVTALCIGGGMGIA 1291
R ++TLL+ ++R+G + GV ++CIG GMG A
Sbjct: 292 RQVITLLNELKRRGKRAYGVVSMCIGTGMGAA 323
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 56,607,166
Number of extensions: 1520089
Number of successful extensions: 5327
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5300
Number of HSP's successfully gapped: 8
Length of query: 510
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 403
Effective length of database: 14,770,016
Effective search space: 5952316448
Effective search space used: 5952316448
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007730
(1530 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 480 e-132
>Sscrofa_Chr01
|| Length = 315321322
Score = 480 bits (242), Expect = e-132
Identities = 245/246 (99%)
Strand = Plus / Minus
Query: 1140 aggtcaacactgaaggaggagctatagccttgggccacccgcttggagcatctggttgcc 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9400083 aggtcaacactgaaggaggagctatagccttgggccacccgcttggagcatctggttgcc 9400024
Query: 1200 gcatacttgttactctgttacacacaatggagcgcaagggttgccagcgtggcgtcactg 1259
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 9400023 gcatacttgttactctgttacacacaatggagcgcaagggttgccagcgtggcgtcgctg 9399964
Query: 1260 ccctgtgcatcgggggtgggatgggaattgcaatgtgtgttcagagaggatgaaatggcc 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9399963 ccctgtgcatcgggggtgggatgggaattgcaatgtgtgttcagagaggatgaaatggcc 9399904
Query: 1320 tagcaattaatcaaacctcatctctttttaaactaattaaatactaaattgtgaaatcag 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9399903 tagcaattaatcaaacctcatctctttttaaactaattaaatactaaattgtgaaatcag 9399844
Query: 1380 aggaca 1385
||||||
Sbjct: 9399843 aggaca 9399838
Score = 371 bits (187), Expect = e-100
Identities = 187/187 (100%)
Strand = Plus / Minus
Query: 305 gcaggttgtgggcagaatcccgttcgacaagccagtgtgggggcaggaatcccctactct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9407407 gcaggttgtgggcagaatcccgttcgacaagccagtgtgggggcaggaatcccctactct 9407348
Query: 365 gttccggcctggagctgccagatgatctgtgggtcaggcctgaaggccgtgtgcctcgcc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9407347 gttccggcctggagctgccagatgatctgtgggtcaggcctgaaggccgtgtgcctcgcc 9407288
Query: 425 gcccaggccataggggtgggagactcccgcattgtggtcgcaggaggcatggaaaacatg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9407287 gcccaggccataggggtgggagactcccgcattgtggtcgcaggaggcatggaaaacatg 9407228
Query: 485 agcaagg 491
|||||||
Sbjct: 9407227 agcaagg 9407221
Score = 317 bits (160), Expect = 1e-83
Identities = 160/160 (100%)
Strand = Plus / Minus
Query: 873 caggaattaatgatggtgctgctgctgtggttcttatgaagaagtcagaggctgagaacc 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9402002 caggaattaatgatggtgctgctgctgtggttcttatgaagaagtcagaggctgagaacc 9401943
Query: 933 gcgggcttactcctttagcacacatagtttcctggtcacaagcaggcgtggagccttcca 992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9401942 gcgggcttactcctttagcacacatagtttcctggtcacaagcaggcgtggagccttcca 9401883
Query: 993 tcatgggaacaggcccaatcccggcaataaagcaagctgt 1032
||||||||||||||||||||||||||||||||||||||||
Sbjct: 9401882 tcatgggaacaggcccaatcccggcaataaagcaagctgt 9401843
Score = 301 bits (152), Expect = 6e-79
Identities = 152/152 (100%)
Strand = Plus / Minus
Query: 604 cacagctgaaaacgtagccaaaaaatggcaagtgagtagagaagatcaggacaggcttgc 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9404179 cacagctgaaaacgtagccaaaaaatggcaagtgagtagagaagatcaggacaggcttgc 9404120
Query: 664 cgctctgtcccaggacaggacggagaaggcacagaaagctggccattttgacaaagagat 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9404119 cgctctgtcccaggacaggacggagaaggcacagaaagctggccattttgacaaagagat 9404060
Query: 724 tgtgccggtttttgtatcttctagaaaaggtg 755
||||||||||||||||||||||||||||||||
Sbjct: 9404059 tgtgccggtttttgtatcttctagaaaaggtg 9404028
Score = 301 bits (152), Expect = 6e-79
Identities = 165/168 (98%), Gaps = 1/168 (0%)
Strand = Plus / Minus
Query: 8 gtctgaggccc-gccccccgggttgccttctcagccgcagggcggggctttgctgactcg 66
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 9411825 gtctgaggccccgccccccgggttgccttctcagccgcagggcggggctttgctcactcg 9411766
Query: 67 ctcgcggcgtggagtccacaccagctcgggaggagctcgattgtgcagaaggatgagtgc 126
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 9411765 ctcgcggcgtggagtccacaccagctcgggaggagctcgactgtgcagaaggatgagtgc 9411706
Query: 127 aggctcggaccccgtggtcatcgtctcggcggcgcggaccgtcatagg 174
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9411705 aggctcggaccccgtggtcatcgtctcggcggcgcggaccgtcatagg 9411658
Score = 278 bits (140), Expect = 9e-72
Identities = 140/140 (100%)
Strand = Plus / Minus
Query: 171 taggctccttcaatggtgctttgtccaccgttcctgtccatgacctgggctcgactgtca 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9410947 taggctccttcaatggtgctttgtccaccgttcctgtccatgacctgggctcgactgtca 9410888
Query: 231 tcagagaggtcctgaagagggccaatgtggatcccaaggaggtatcagaggtcatatttg 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9410887 tcagagaggtcctgaagagggccaatgtggatcccaaggaggtatcagaggtcatatttg 9410828
Query: 291 gacacgttttgacagcaggt 310
||||||||||||||||||||
Sbjct: 9410827 gacacgttttgacagcaggt 9410808
Score = 250 bits (126), Expect = 2e-63
Identities = 126/126 (100%)
Strand = Plus / Minus
Query: 751 aggtgtcaccgaagtgaaaaccgatgagtttcctcgccccgggagcaccctagaagccat 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9402780 aggtgtcaccgaagtgaaaaccgatgagtttcctcgccccgggagcaccctagaagccat 9402721
Query: 811 gtctaagctaaagccttactttctcacagatgggacaggaacagtcaccccagctaatgc 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9402720 gtctaagctaaagccttactttctcacagatgggacaggaacagtcaccccagctaatgc 9402661
Query: 871 ctcagg 876
||||||
Sbjct: 9402660 ctcagg 9402655
Score = 238 bits (120), Expect = 7e-60
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 489 aggcccctcacttggttcgcctgaggaccggcgtcaggctcggggaggccgcgctcactg 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9405281 aggcccctcacttggttcgcctgaggaccggcgtcaggctcggggaggccgcgctcactg 9405222
Query: 549 acagcatcctctgtgatgggctgacagatgcgtttcacaactaccacatgggcatcacag 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9405221 acagcatcctctgtgatgggctgacagatgcgtttcacaactaccacatgggcatcacag 9405162
Score = 224 bits (113), Expect = 1e-55
Identities = 113/113 (100%)
Strand = Plus / Minus
Query: 1031 gttgcaaaagcaggttggtcactggaagatgtggacatatttgaaatcaacgaagctttt 1090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9400837 gttgcaaaagcaggttggtcactggaagatgtggacatatttgaaatcaacgaagctttt 9400778
Query: 1091 gcagccgtctctgttgcaatagttaaagaacttggattaaacccagaaaaggt 1143
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9400777 gcagccgtctctgttgcaatagttaaagaacttggattaaacccagaaaaggt 9400725
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 39,121,119
Number of extensions: 207
Number of successful extensions: 207
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 9
Length of query: 1530
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1509
Effective length of database: 2,808,413,156
Effective search space: 4237895452404
Effective search space used: 4237895452404
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)