Animal-Genome cDNA 20110601C-007769


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007769
         (1105 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001095847.1| adenylosuccinate lyase [Bos taurus].              664   0.0  

>ref|NP_001095847.1| adenylosuccinate lyase [Bos taurus].
          Length = 490

 Score =  664 bits (1714), Expect = 0.0
 Identities = 325/341 (95%), Positives = 337/341 (98%)
 Frame = +1

Query: 82   SYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMRSHLDN 261
            SYRSPLASRYASPEMCF+FSD+YKFRTWRQLWLWLAEAEQTLGLPITDEQIQEM+S+LDN
Sbjct: 18   SYRSPLASRYASPEMCFLFSDKYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMKSNLDN 77

Query: 262  IDFKLAAEEEKRLRHDVMAHVHTFAHCCPKAAAIIHLGATSCYVGDNTDLIILRNAFDLL 441
            IDF++AAEEEK+LRHDVMAHVHTFAHCCPKAA+IIHLGATSCYVGDNTDLIILRNAFDLL
Sbjct: 78   IDFRMAAEEEKQLRHDVMAHVHTFAHCCPKAASIIHLGATSCYVGDNTDLIILRNAFDLL 137

Query: 442  LPKLARVISRLADFAKERADLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDFQNLKRVRD 621
            LPKLARVISRLADFAKE+ADLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMD QNLKRVRD
Sbjct: 138  LPKLARVISRLADFAKEQADLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRD 197

Query: 622  DLRFRGVKGTTGTQASFLQLFEGDDQKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEV 801
            +LRFRGVKGTTGTQASFLQLFEGDDQKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEV
Sbjct: 198  ELRFRGVKGTTGTQASFLQLFEGDDQKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEV 257

Query: 802  LSVLASLGASVHKICTDIRLLANLKEIEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL 981
            LSVLASLGASVHKICTDIRLLANLKE+EEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL
Sbjct: 258  LSVLASLGASVHKICTDIRLLANLKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL 317

Query: 982  MTLVMDTLQTASVQWFERTLDDSANRRICLGEAFLTADTIL 1104
            M LVMD LQTASVQWFERTLDDSANRRICL EAFLTADT+L
Sbjct: 318  MALVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTVL 358


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,900,953
Number of extensions: 1173955
Number of successful extensions: 4074
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4073
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 264
Effective length of database: 14,240,222
Effective search space: 3759418608
Effective search space used: 3759418608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007769
         (1105 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_531727.2| PREDICTED: similar to adenylosuccinate lyase is...   649   0.0  
Alignment   gi|XP_859265.1| PREDICTED: similar to adenylosuccinate lyase is...   649   0.0  

>ref|XP_531727.2| PREDICTED: similar to adenylosuccinate lyase isoform 1 [Canis
            familiaris].
          Length = 490

 Score =  649 bits (1674), Expect = 0.0
 Identities = 320/341 (93%), Positives = 330/341 (96%)
 Frame = +1

Query: 82   SYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMRSHLDN 261
            SY SPLASRYASPEMCF+FSDR KFRTWRQLWLWLAEAEQ LGLPITDEQIQEM+S+LDN
Sbjct: 18   SYCSPLASRYASPEMCFMFSDRCKFRTWRQLWLWLAEAEQALGLPITDEQIQEMKSNLDN 77

Query: 262  IDFKLAAEEEKRLRHDVMAHVHTFAHCCPKAAAIIHLGATSCYVGDNTDLIILRNAFDLL 441
            IDFK+AAE+EK+LRHDVMAHVHTF HCC KAAAIIHLGATSCYVGDNTDLIILRNA DLL
Sbjct: 78   IDFKMAAEKEKQLRHDVMAHVHTFGHCCQKAAAIIHLGATSCYVGDNTDLIILRNAIDLL 137

Query: 442  LPKLARVISRLADFAKERADLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDFQNLKRVRD 621
            LPKLARVISRLADFAKERADLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMD QNLKRV+D
Sbjct: 138  LPKLARVISRLADFAKERADLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVQD 197

Query: 622  DLRFRGVKGTTGTQASFLQLFEGDDQKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEV 801
            DLRFRGVKGTTGTQASFLQLFEGD+QKVEQLDKMVTEKAGF RAFIITGQTYTRKVDIEV
Sbjct: 198  DLRFRGVKGTTGTQASFLQLFEGDEQKVEQLDKMVTEKAGFNRAFIITGQTYTRKVDIEV 257

Query: 802  LSVLASLGASVHKICTDIRLLANLKEIEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL 981
            LSVLASLGASVHKICTDIRLLANLKE+EEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL
Sbjct: 258  LSVLASLGASVHKICTDIRLLANLKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL 317

Query: 982  MTLVMDTLQTASVQWFERTLDDSANRRICLGEAFLTADTIL 1104
            MTL+MD LQTASVQWFERTLDDSANRRICL EAFLTAD IL
Sbjct: 318  MTLIMDPLQTASVQWFERTLDDSANRRICLAEAFLTADAIL 358


>ref|XP_859265.1| PREDICTED: similar to adenylosuccinate lyase isoform 2 [Canis
            familiaris].
          Length = 431

 Score =  649 bits (1674), Expect = 0.0
 Identities = 320/341 (93%), Positives = 330/341 (96%)
 Frame = +1

Query: 82   SYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMRSHLDN 261
            SY SPLASRYASPEMCF+FSDR KFRTWRQLWLWLAEAEQ LGLPITDEQIQEM+S+LDN
Sbjct: 18   SYCSPLASRYASPEMCFMFSDRCKFRTWRQLWLWLAEAEQALGLPITDEQIQEMKSNLDN 77

Query: 262  IDFKLAAEEEKRLRHDVMAHVHTFAHCCPKAAAIIHLGATSCYVGDNTDLIILRNAFDLL 441
            IDFK+AAE+EK+LRHDVMAHVHTF HCC KAAAIIHLGATSCYVGDNTDLIILRNA DLL
Sbjct: 78   IDFKMAAEKEKQLRHDVMAHVHTFGHCCQKAAAIIHLGATSCYVGDNTDLIILRNAIDLL 137

Query: 442  LPKLARVISRLADFAKERADLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDFQNLKRVRD 621
            LPKLARVISRLADFAKERADLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMD QNLKRV+D
Sbjct: 138  LPKLARVISRLADFAKERADLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVQD 197

Query: 622  DLRFRGVKGTTGTQASFLQLFEGDDQKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEV 801
            DLRFRGVKGTTGTQASFLQLFEGD+QKVEQLDKMVTEKAGF RAFIITGQTYTRKVDIEV
Sbjct: 198  DLRFRGVKGTTGTQASFLQLFEGDEQKVEQLDKMVTEKAGFNRAFIITGQTYTRKVDIEV 257

Query: 802  LSVLASLGASVHKICTDIRLLANLKEIEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL 981
            LSVLASLGASVHKICTDIRLLANLKE+EEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL
Sbjct: 258  LSVLASLGASVHKICTDIRLLANLKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL 317

Query: 982  MTLVMDTLQTASVQWFERTLDDSANRRICLGEAFLTADTIL 1104
            MTL+MD LQTASVQWFERTLDDSANRRICL EAFLTAD IL
Sbjct: 318  MTLIMDPLQTASVQWFERTLDDSANRRICLAEAFLTADAIL 358


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,531,619
Number of extensions: 1199151
Number of successful extensions: 4335
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4331
Number of HSP's successfully gapped: 2
Length of query: 368
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 264
Effective length of database: 15,407,560
Effective search space: 4067595840
Effective search space used: 4067595840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007769
         (1105 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001124205.1| adenylosuccinate lyase [Sus scrofa].              684   0.0  

>ref|NP_001124205.1| adenylosuccinate lyase [Sus scrofa].
          Length = 484

 Score =  684 bits (1765), Expect = 0.0
 Identities = 339/341 (99%), Positives = 339/341 (99%)
 Frame = +1

Query: 82   SYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMRSHLDN 261
            SYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMRSHLDN
Sbjct: 12   SYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMRSHLDN 71

Query: 262  IDFKLAAEEEKRLRHDVMAHVHTFAHCCPKAAAIIHLGATSCYVGDNTDLIILRNAFDLL 441
            IDFKLAAEEEKRLRHDVMAHVHTFAHCCPKAAAIIHLGATSCYVGDNTDLIILRNAFDLL
Sbjct: 72   IDFKLAAEEEKRLRHDVMAHVHTFAHCCPKAAAIIHLGATSCYVGDNTDLIILRNAFDLL 131

Query: 442  LPKLARVISRLADFAKERADLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDFQNLKRVRD 621
            LPKLARVISRLADFAKERADLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDFQNLKRVRD
Sbjct: 132  LPKLARVISRLADFAKERADLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDFQNLKRVRD 191

Query: 622  DLRFRGVKGTTGTQASFLQLFEGDDQKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEV 801
            DLRFRGVKGTTGTQASFLQLFEGDDQKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEV
Sbjct: 192  DLRFRGVKGTTGTQASFLQLFEGDDQKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEV 251

Query: 802  LSVLASLGASVHKICTDIRLLANLKEIEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL 981
            LSVLASLGASVHKICTDIRLLANLKEIEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL
Sbjct: 252  LSVLASLGASVHKICTDIRLLANLKEIEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL 311

Query: 982  MTLVMDTLQTASVQWFERTLDDSANRRICLGEAFLTADTIL 1104
            MTLVMD LQTASVQWFERTLDDSANRRICL EAFLTADTIL
Sbjct: 312  MTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTIL 352


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,588,958
Number of extensions: 749360
Number of successful extensions: 2705
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2701
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 268
Effective length of database: 8,854,232
Effective search space: 2372934176
Effective search space used: 2372934176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007769
         (1105 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_033764.2| adenylosuccinate lyase [Mus musculus].               653   0.0  

>ref|NP_033764.2| adenylosuccinate lyase [Mus musculus].
          Length = 484

 Score =  653 bits (1685), Expect = 0.0
 Identities = 321/341 (94%), Positives = 332/341 (97%)
 Frame = +1

Query: 82   SYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMRSHLDN 261
            SYRSPLA+RYAS EMCF+FSDRYKF+TWRQLWLWLAEAEQTLGLPITDEQIQEM+S+L+N
Sbjct: 12   SYRSPLAARYASREMCFLFSDRYKFQTWRQLWLWLAEAEQTLGLPITDEQIQEMKSNLNN 71

Query: 262  IDFKLAAEEEKRLRHDVMAHVHTFAHCCPKAAAIIHLGATSCYVGDNTDLIILRNAFDLL 441
            IDF++AAEEEKRLRHDVMAHVHTF HCCPKAA IIHLGATSCYVGDNTDLIILRNAFDLL
Sbjct: 72   IDFQMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGATSCYVGDNTDLIILRNAFDLL 131

Query: 442  LPKLARVISRLADFAKERADLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDFQNLKRVRD 621
            LPKLARVISRLADFAK+RADLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMD QNLKRVRD
Sbjct: 132  LPKLARVISRLADFAKDRADLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRD 191

Query: 622  DLRFRGVKGTTGTQASFLQLFEGDDQKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEV 801
            +LRFRGVKGTTGTQASFLQLFEGD QKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEV
Sbjct: 192  ELRFRGVKGTTGTQASFLQLFEGDHQKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEV 251

Query: 802  LSVLASLGASVHKICTDIRLLANLKEIEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL 981
            LSVLASLGASVHKICTDIRLLANLKE+EEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL
Sbjct: 252  LSVLASLGASVHKICTDIRLLANLKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL 311

Query: 982  MTLVMDTLQTASVQWFERTLDDSANRRICLGEAFLTADTIL 1104
            M L MD LQTASVQWFERTLDDSANRRICL EAFLTADTIL
Sbjct: 312  MALTMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTIL 352


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,489,781
Number of extensions: 1015280
Number of successful extensions: 3563
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3558
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 265
Effective length of database: 12,523,851
Effective search space: 3318820515
Effective search space used: 3318820515
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007769
         (1105 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001116850.1| adenylosuccinate lyase isoform b [Homo sapie...   665   0.0  
Alignment   gi|NP_000017.1| adenylosuccinate lyase isoform a [Homo sapiens].     665   0.0  

>ref|NP_001116850.1| adenylosuccinate lyase isoform b [Homo sapiens].
          Length = 425

 Score =  665 bits (1715), Expect = 0.0
 Identities = 328/341 (96%), Positives = 333/341 (97%)
 Frame = +1

Query: 82   SYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMRSHLDN 261
            SYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEM+S+L+N
Sbjct: 12   SYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMKSNLEN 71

Query: 262  IDFKLAAEEEKRLRHDVMAHVHTFAHCCPKAAAIIHLGATSCYVGDNTDLIILRNAFDLL 441
            IDFK+AAEEEKRLRHDVMAHVHTF HCCPKAA IIHLGATSCYVGDNTDLIILRNA DLL
Sbjct: 72   IDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGATSCYVGDNTDLIILRNALDLL 131

Query: 442  LPKLARVISRLADFAKERADLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDFQNLKRVRD 621
            LPKLARVISRLADFAKERA LPTLGFTHFQPAQLTTVGKRCCLWIQDLCMD QNLKRVRD
Sbjct: 132  LPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRD 191

Query: 622  DLRFRGVKGTTGTQASFLQLFEGDDQKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEV 801
            DLRFRGVKGTTGTQASFLQLFEGDD KVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEV
Sbjct: 192  DLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEV 251

Query: 802  LSVLASLGASVHKICTDIRLLANLKEIEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL 981
            LSVLASLGASVHKICTDIRLLANLKE+EEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL
Sbjct: 252  LSVLASLGASVHKICTDIRLLANLKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL 311

Query: 982  MTLVMDTLQTASVQWFERTLDDSANRRICLGEAFLTADTIL 1104
            MTLVMD LQTASVQWFERTLDDSANRRICL EAFLTADTIL
Sbjct: 312  MTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTIL 352


>ref|NP_000017.1| adenylosuccinate lyase isoform a [Homo sapiens].
          Length = 484

 Score =  665 bits (1715), Expect = 0.0
 Identities = 328/341 (96%), Positives = 333/341 (97%)
 Frame = +1

Query: 82   SYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMRSHLDN 261
            SYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEM+S+L+N
Sbjct: 12   SYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMKSNLEN 71

Query: 262  IDFKLAAEEEKRLRHDVMAHVHTFAHCCPKAAAIIHLGATSCYVGDNTDLIILRNAFDLL 441
            IDFK+AAEEEKRLRHDVMAHVHTF HCCPKAA IIHLGATSCYVGDNTDLIILRNA DLL
Sbjct: 72   IDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGATSCYVGDNTDLIILRNALDLL 131

Query: 442  LPKLARVISRLADFAKERADLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDFQNLKRVRD 621
            LPKLARVISRLADFAKERA LPTLGFTHFQPAQLTTVGKRCCLWIQDLCMD QNLKRVRD
Sbjct: 132  LPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRD 191

Query: 622  DLRFRGVKGTTGTQASFLQLFEGDDQKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEV 801
            DLRFRGVKGTTGTQASFLQLFEGDD KVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEV
Sbjct: 192  DLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEV 251

Query: 802  LSVLASLGASVHKICTDIRLLANLKEIEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL 981
            LSVLASLGASVHKICTDIRLLANLKE+EEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL
Sbjct: 252  LSVLASLGASVHKICTDIRLLANLKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL 311

Query: 982  MTLVMDTLQTASVQWFERTLDDSANRRICLGEAFLTADTIL 1104
            MTLVMD LQTASVQWFERTLDDSANRRICL EAFLTADTIL
Sbjct: 312  MTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTIL 352


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,930,628
Number of extensions: 1193083
Number of successful extensions: 4369
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4364
Number of HSP's successfully gapped: 2
Length of query: 368
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 264
Effective length of database: 14,868,908
Effective search space: 3925391712
Effective search space used: 3925391712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007769
         (1105 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr05                                                         414   e-113

>Sscrofa_Chr05 
||          Length = 111506441

 Score =  414 bits (209), Expect = e-113
 Identities = 209/209 (100%)
 Strand = Plus / Minus

                                                                           
Query: 198     gcagacattgggtttgcctatcaccgacgaacaaatccaggaaatgagatcacacctgga 257
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5273983 gcagacattgggtttgcctatcaccgacgaacaaatccaggaaatgagatcacacctgga 5273924

                                                                           
Query: 258     caacatcgacttcaagctggcagctgaggaagagaagcggctccgacatgatgtgatggc 317
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5273923 caacatcgacttcaagctggcagctgaggaagagaagcggctccgacatgatgtgatggc 5273864

                                                                           
Query: 318     tcatgtgcacacgtttgcccactgctgtccaaaagctgccgctattattcacctcggtgc 377
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5273863 tcatgtgcacacgtttgcccactgctgtccaaaagctgccgctattattcacctcggtgc 5273804

                                            
Query: 378     cacctcctgctatgttggggacaataccg 406
               |||||||||||||||||||||||||||||
Sbjct: 5273803 cacctcctgctatgttggggacaataccg 5273775



 Score =  398 bits (201), Expect = e-108
 Identities = 201/201 (100%)
 Strand = Plus / Minus

                                                                           
Query: 1       ttccgctgtggctggtcctgtcccttctagcagggtcgtgtgttcgggatggcggcggga 60
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5278037 ttccgctgtggctggtcctgtcccttctagcagggtcgtgtgttcgggatggcggcggga 5277978

                                                                           
Query: 61      ggtgaccatgacgggcacgacagctaccgctcgccgcttgcctcccgctatgccagcccg 120
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5277977 ggtgaccatgacgggcacgacagctaccgctcgccgcttgcctcccgctatgccagcccg 5277918

                                                                           
Query: 121     gagatgtgcttcgtgtttagcgacaggtacaaattccggacctggcggcagctctggctg 180
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5277917 gagatgtgcttcgtgtttagcgacaggtacaaattccggacctggcggcagctctggctg 5277858

                                    
Query: 181     tggctggcggaggctgagcag 201
               |||||||||||||||||||||
Sbjct: 5277857 tggctggcggaggctgagcag 5277837



 Score =  347 bits (175), Expect = 8e-93
 Identities = 175/175 (100%)
 Strand = Plus / Minus

                                                                           
Query: 531     gcctgctcagctgaccacagttgggaagcgttgctgtctttggattcaagatctttgcat 590
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5268737 gcctgctcagctgaccacagttgggaagcgttgctgtctttggattcaagatctttgcat 5268678

                                                                           
Query: 591     ggatttccaaaacttgaagcgtgtccgagatgacctgcgcttccgaggagtgaagggtac 650
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5268677 ggatttccaaaacttgaagcgtgtccgagatgacctgcgcttccgaggagtgaagggtac 5268618

                                                                      
Query: 651     cactggcactcaggccagcttcctgcagctcttcgagggagatgaccaaaaggta 705
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5268617 cactggcactcaggccagcttcctgcagctcttcgagggagatgaccaaaaggta 5268563



 Score =  280 bits (141), Expect = 2e-72
 Identities = 147/149 (98%)
 Strand = Plus / Minus

                                                                           
Query: 910     ggctcaagcgcaatgccgtacaagcggaacccgatgcgctcagagcggtgctgcagcctc 969
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5266289 ggctcaagcgcaatgccgtacaagcggaacccgatgcgctcagagcggtgctgcagcctc 5266230

                                                                           
Query: 970     gcccgtcacctgatgacccttgtcatggacacactgcaaacggcgtctgtgcagtggttt 1029
               |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 5266229 gcccgtcacctgatgacccttgtcatggacccactgcagacggcgtctgtgcagtggttt 5266170

                                            
Query: 1030    gaacgcacactggatgacagtgccaaccg 1058
               |||||||||||||||||||||||||||||
Sbjct: 5266169 gaacgcacactggatgacagtgccaaccg 5266141



 Score =  184 bits (93), Expect = 7e-44
 Identities = 93/93 (100%)
 Strand = Plus / Minus

                                                                           
Query: 748     agggctttcattatcacagggcagacttatactcgaaaagtcgatattgaggtgctctct 807
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5266955 agggctttcattatcacagggcagacttatactcgaaaagtcgatattgaggtgctctct 5266896

                                                
Query: 808     gtgctggccagcttgggggcatcggtgcacaag 840
               |||||||||||||||||||||||||||||||||
Sbjct: 5266895 gtgctggccagcttgggggcatcggtgcacaag 5266863



 Score =  165 bits (83), Expect = 6e-38
 Identities = 83/83 (100%)
 Strand = Plus / Minus

                                                                           
Query: 449     agcttgccagagtgatctctcggcttgccgactttgccaaggaacgggctgatctaccca 508
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5270881 agcttgccagagtgatctctcggcttgccgactttgccaaggaacgggctgatctaccca 5270822

                                      
Query: 509     ccttaggtttcacgcacttccag 531
               |||||||||||||||||||||||
Sbjct: 5270821 ccttaggtttcacgcacttccag 5270799



 Score =  145 bits (73), Expect = 6e-32
 Identities = 73/73 (100%)
 Strand = Plus / Minus

                                                                           
Query: 839     agatttgtactgacatacgactcttggcaaacctcaaggagatagaggagcccttcgaaa 898
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5266498 agatttgtactgacatacgactcttggcaaacctcaaggagatagaggagcccttcgaaa 5266439

                            
Query: 899     aacagcagattgg 911
               |||||||||||||
Sbjct: 5266438 aacagcagattgg 5266426



 Score =  101 bits (51), Expect = 8e-19
 Identities = 51/51 (100%)
 Strand = Plus / Minus

                                                                  
Query: 700     aaggtagagcagcttgacaagatggtgacagaaaaggcgggattcaagagg 750
               |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5268086 aaggtagagcagcttgacaagatggtgacagaaaaggcgggattcaagagg 5268036



 Score = 89.7 bits (45), Expect = 3e-15
 Identities = 45/45 (100%)
 Strand = Plus / Minus

                                                            
Query: 406     gatctgattatccttagaaatgcatttgacctgcttttgccaaag 450
               |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5271427 gatctgattatccttagaaatgcatttgacctgcttttgccaaag 5271383



 Score = 79.8 bits (40), Expect = 3e-12
 Identities = 46/48 (95%)
 Strand = Plus / Minus

                                                               
Query: 1058    gacgtatctgtttgggcgaggcatttctcactgcagataccatactga 1105
               ||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 5264444 gacgtatctgtttggccgaggcatttctcactgcagatacgatactga 5264397


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,337,936
Number of extensions: 174
Number of successful extensions: 174
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 10
Length of query: 1105
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1084
Effective length of database: 2,808,413,156
Effective search space: 3044319861104
Effective search space used: 3044319861104
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)