Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007769
(1105 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095847.1| adenylosuccinate lyase [Bos taurus]. 664 0.0
>ref|NP_001095847.1| adenylosuccinate lyase [Bos taurus].
Length = 490
Score = 664 bits (1714), Expect = 0.0
Identities = 325/341 (95%), Positives = 337/341 (98%)
Frame = +1
Query: 82 SYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMRSHLDN 261
SYRSPLASRYASPEMCF+FSD+YKFRTWRQLWLWLAEAEQTLGLPITDEQIQEM+S+LDN
Sbjct: 18 SYRSPLASRYASPEMCFLFSDKYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMKSNLDN 77
Query: 262 IDFKLAAEEEKRLRHDVMAHVHTFAHCCPKAAAIIHLGATSCYVGDNTDLIILRNAFDLL 441
IDF++AAEEEK+LRHDVMAHVHTFAHCCPKAA+IIHLGATSCYVGDNTDLIILRNAFDLL
Sbjct: 78 IDFRMAAEEEKQLRHDVMAHVHTFAHCCPKAASIIHLGATSCYVGDNTDLIILRNAFDLL 137
Query: 442 LPKLARVISRLADFAKERADLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDFQNLKRVRD 621
LPKLARVISRLADFAKE+ADLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMD QNLKRVRD
Sbjct: 138 LPKLARVISRLADFAKEQADLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRD 197
Query: 622 DLRFRGVKGTTGTQASFLQLFEGDDQKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEV 801
+LRFRGVKGTTGTQASFLQLFEGDDQKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEV
Sbjct: 198 ELRFRGVKGTTGTQASFLQLFEGDDQKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEV 257
Query: 802 LSVLASLGASVHKICTDIRLLANLKEIEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL 981
LSVLASLGASVHKICTDIRLLANLKE+EEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL
Sbjct: 258 LSVLASLGASVHKICTDIRLLANLKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL 317
Query: 982 MTLVMDTLQTASVQWFERTLDDSANRRICLGEAFLTADTIL 1104
M LVMD LQTASVQWFERTLDDSANRRICL EAFLTADT+L
Sbjct: 318 MALVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTVL 358
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,900,953
Number of extensions: 1173955
Number of successful extensions: 4074
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4073
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 264
Effective length of database: 14,240,222
Effective search space: 3759418608
Effective search space used: 3759418608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007769
(1105 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531727.2| PREDICTED: similar to adenylosuccinate lyase is... 649 0.0
Alignment gi|XP_859265.1| PREDICTED: similar to adenylosuccinate lyase is... 649 0.0
>ref|XP_531727.2| PREDICTED: similar to adenylosuccinate lyase isoform 1 [Canis
familiaris].
Length = 490
Score = 649 bits (1674), Expect = 0.0
Identities = 320/341 (93%), Positives = 330/341 (96%)
Frame = +1
Query: 82 SYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMRSHLDN 261
SY SPLASRYASPEMCF+FSDR KFRTWRQLWLWLAEAEQ LGLPITDEQIQEM+S+LDN
Sbjct: 18 SYCSPLASRYASPEMCFMFSDRCKFRTWRQLWLWLAEAEQALGLPITDEQIQEMKSNLDN 77
Query: 262 IDFKLAAEEEKRLRHDVMAHVHTFAHCCPKAAAIIHLGATSCYVGDNTDLIILRNAFDLL 441
IDFK+AAE+EK+LRHDVMAHVHTF HCC KAAAIIHLGATSCYVGDNTDLIILRNA DLL
Sbjct: 78 IDFKMAAEKEKQLRHDVMAHVHTFGHCCQKAAAIIHLGATSCYVGDNTDLIILRNAIDLL 137
Query: 442 LPKLARVISRLADFAKERADLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDFQNLKRVRD 621
LPKLARVISRLADFAKERADLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMD QNLKRV+D
Sbjct: 138 LPKLARVISRLADFAKERADLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVQD 197
Query: 622 DLRFRGVKGTTGTQASFLQLFEGDDQKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEV 801
DLRFRGVKGTTGTQASFLQLFEGD+QKVEQLDKMVTEKAGF RAFIITGQTYTRKVDIEV
Sbjct: 198 DLRFRGVKGTTGTQASFLQLFEGDEQKVEQLDKMVTEKAGFNRAFIITGQTYTRKVDIEV 257
Query: 802 LSVLASLGASVHKICTDIRLLANLKEIEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL 981
LSVLASLGASVHKICTDIRLLANLKE+EEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL
Sbjct: 258 LSVLASLGASVHKICTDIRLLANLKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL 317
Query: 982 MTLVMDTLQTASVQWFERTLDDSANRRICLGEAFLTADTIL 1104
MTL+MD LQTASVQWFERTLDDSANRRICL EAFLTAD IL
Sbjct: 318 MTLIMDPLQTASVQWFERTLDDSANRRICLAEAFLTADAIL 358
>ref|XP_859265.1| PREDICTED: similar to adenylosuccinate lyase isoform 2 [Canis
familiaris].
Length = 431
Score = 649 bits (1674), Expect = 0.0
Identities = 320/341 (93%), Positives = 330/341 (96%)
Frame = +1
Query: 82 SYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMRSHLDN 261
SY SPLASRYASPEMCF+FSDR KFRTWRQLWLWLAEAEQ LGLPITDEQIQEM+S+LDN
Sbjct: 18 SYCSPLASRYASPEMCFMFSDRCKFRTWRQLWLWLAEAEQALGLPITDEQIQEMKSNLDN 77
Query: 262 IDFKLAAEEEKRLRHDVMAHVHTFAHCCPKAAAIIHLGATSCYVGDNTDLIILRNAFDLL 441
IDFK+AAE+EK+LRHDVMAHVHTF HCC KAAAIIHLGATSCYVGDNTDLIILRNA DLL
Sbjct: 78 IDFKMAAEKEKQLRHDVMAHVHTFGHCCQKAAAIIHLGATSCYVGDNTDLIILRNAIDLL 137
Query: 442 LPKLARVISRLADFAKERADLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDFQNLKRVRD 621
LPKLARVISRLADFAKERADLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMD QNLKRV+D
Sbjct: 138 LPKLARVISRLADFAKERADLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVQD 197
Query: 622 DLRFRGVKGTTGTQASFLQLFEGDDQKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEV 801
DLRFRGVKGTTGTQASFLQLFEGD+QKVEQLDKMVTEKAGF RAFIITGQTYTRKVDIEV
Sbjct: 198 DLRFRGVKGTTGTQASFLQLFEGDEQKVEQLDKMVTEKAGFNRAFIITGQTYTRKVDIEV 257
Query: 802 LSVLASLGASVHKICTDIRLLANLKEIEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL 981
LSVLASLGASVHKICTDIRLLANLKE+EEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL
Sbjct: 258 LSVLASLGASVHKICTDIRLLANLKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL 317
Query: 982 MTLVMDTLQTASVQWFERTLDDSANRRICLGEAFLTADTIL 1104
MTL+MD LQTASVQWFERTLDDSANRRICL EAFLTAD IL
Sbjct: 318 MTLIMDPLQTASVQWFERTLDDSANRRICLAEAFLTADAIL 358
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,531,619
Number of extensions: 1199151
Number of successful extensions: 4335
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4331
Number of HSP's successfully gapped: 2
Length of query: 368
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 264
Effective length of database: 15,407,560
Effective search space: 4067595840
Effective search space used: 4067595840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007769
(1105 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001124205.1| adenylosuccinate lyase [Sus scrofa]. 684 0.0
>ref|NP_001124205.1| adenylosuccinate lyase [Sus scrofa].
Length = 484
Score = 684 bits (1765), Expect = 0.0
Identities = 339/341 (99%), Positives = 339/341 (99%)
Frame = +1
Query: 82 SYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMRSHLDN 261
SYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMRSHLDN
Sbjct: 12 SYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMRSHLDN 71
Query: 262 IDFKLAAEEEKRLRHDVMAHVHTFAHCCPKAAAIIHLGATSCYVGDNTDLIILRNAFDLL 441
IDFKLAAEEEKRLRHDVMAHVHTFAHCCPKAAAIIHLGATSCYVGDNTDLIILRNAFDLL
Sbjct: 72 IDFKLAAEEEKRLRHDVMAHVHTFAHCCPKAAAIIHLGATSCYVGDNTDLIILRNAFDLL 131
Query: 442 LPKLARVISRLADFAKERADLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDFQNLKRVRD 621
LPKLARVISRLADFAKERADLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDFQNLKRVRD
Sbjct: 132 LPKLARVISRLADFAKERADLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDFQNLKRVRD 191
Query: 622 DLRFRGVKGTTGTQASFLQLFEGDDQKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEV 801
DLRFRGVKGTTGTQASFLQLFEGDDQKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEV
Sbjct: 192 DLRFRGVKGTTGTQASFLQLFEGDDQKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEV 251
Query: 802 LSVLASLGASVHKICTDIRLLANLKEIEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL 981
LSVLASLGASVHKICTDIRLLANLKEIEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL
Sbjct: 252 LSVLASLGASVHKICTDIRLLANLKEIEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL 311
Query: 982 MTLVMDTLQTASVQWFERTLDDSANRRICLGEAFLTADTIL 1104
MTLVMD LQTASVQWFERTLDDSANRRICL EAFLTADTIL
Sbjct: 312 MTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTIL 352
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,588,958
Number of extensions: 749360
Number of successful extensions: 2705
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2701
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 268
Effective length of database: 8,854,232
Effective search space: 2372934176
Effective search space used: 2372934176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007769
(1105 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033764.2| adenylosuccinate lyase [Mus musculus]. 653 0.0
>ref|NP_033764.2| adenylosuccinate lyase [Mus musculus].
Length = 484
Score = 653 bits (1685), Expect = 0.0
Identities = 321/341 (94%), Positives = 332/341 (97%)
Frame = +1
Query: 82 SYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMRSHLDN 261
SYRSPLA+RYAS EMCF+FSDRYKF+TWRQLWLWLAEAEQTLGLPITDEQIQEM+S+L+N
Sbjct: 12 SYRSPLAARYASREMCFLFSDRYKFQTWRQLWLWLAEAEQTLGLPITDEQIQEMKSNLNN 71
Query: 262 IDFKLAAEEEKRLRHDVMAHVHTFAHCCPKAAAIIHLGATSCYVGDNTDLIILRNAFDLL 441
IDF++AAEEEKRLRHDVMAHVHTF HCCPKAA IIHLGATSCYVGDNTDLIILRNAFDLL
Sbjct: 72 IDFQMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGATSCYVGDNTDLIILRNAFDLL 131
Query: 442 LPKLARVISRLADFAKERADLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDFQNLKRVRD 621
LPKLARVISRLADFAK+RADLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMD QNLKRVRD
Sbjct: 132 LPKLARVISRLADFAKDRADLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRD 191
Query: 622 DLRFRGVKGTTGTQASFLQLFEGDDQKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEV 801
+LRFRGVKGTTGTQASFLQLFEGD QKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEV
Sbjct: 192 ELRFRGVKGTTGTQASFLQLFEGDHQKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEV 251
Query: 802 LSVLASLGASVHKICTDIRLLANLKEIEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL 981
LSVLASLGASVHKICTDIRLLANLKE+EEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL
Sbjct: 252 LSVLASLGASVHKICTDIRLLANLKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL 311
Query: 982 MTLVMDTLQTASVQWFERTLDDSANRRICLGEAFLTADTIL 1104
M L MD LQTASVQWFERTLDDSANRRICL EAFLTADTIL
Sbjct: 312 MALTMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTIL 352
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,489,781
Number of extensions: 1015280
Number of successful extensions: 3563
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3558
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 265
Effective length of database: 12,523,851
Effective search space: 3318820515
Effective search space used: 3318820515
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007769
(1105 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001116850.1| adenylosuccinate lyase isoform b [Homo sapie... 665 0.0
Alignment gi|NP_000017.1| adenylosuccinate lyase isoform a [Homo sapiens]. 665 0.0
>ref|NP_001116850.1| adenylosuccinate lyase isoform b [Homo sapiens].
Length = 425
Score = 665 bits (1715), Expect = 0.0
Identities = 328/341 (96%), Positives = 333/341 (97%)
Frame = +1
Query: 82 SYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMRSHLDN 261
SYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEM+S+L+N
Sbjct: 12 SYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMKSNLEN 71
Query: 262 IDFKLAAEEEKRLRHDVMAHVHTFAHCCPKAAAIIHLGATSCYVGDNTDLIILRNAFDLL 441
IDFK+AAEEEKRLRHDVMAHVHTF HCCPKAA IIHLGATSCYVGDNTDLIILRNA DLL
Sbjct: 72 IDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGATSCYVGDNTDLIILRNALDLL 131
Query: 442 LPKLARVISRLADFAKERADLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDFQNLKRVRD 621
LPKLARVISRLADFAKERA LPTLGFTHFQPAQLTTVGKRCCLWIQDLCMD QNLKRVRD
Sbjct: 132 LPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRD 191
Query: 622 DLRFRGVKGTTGTQASFLQLFEGDDQKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEV 801
DLRFRGVKGTTGTQASFLQLFEGDD KVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEV
Sbjct: 192 DLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEV 251
Query: 802 LSVLASLGASVHKICTDIRLLANLKEIEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL 981
LSVLASLGASVHKICTDIRLLANLKE+EEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL
Sbjct: 252 LSVLASLGASVHKICTDIRLLANLKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL 311
Query: 982 MTLVMDTLQTASVQWFERTLDDSANRRICLGEAFLTADTIL 1104
MTLVMD LQTASVQWFERTLDDSANRRICL EAFLTADTIL
Sbjct: 312 MTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTIL 352
>ref|NP_000017.1| adenylosuccinate lyase isoform a [Homo sapiens].
Length = 484
Score = 665 bits (1715), Expect = 0.0
Identities = 328/341 (96%), Positives = 333/341 (97%)
Frame = +1
Query: 82 SYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMRSHLDN 261
SYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEM+S+L+N
Sbjct: 12 SYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMKSNLEN 71
Query: 262 IDFKLAAEEEKRLRHDVMAHVHTFAHCCPKAAAIIHLGATSCYVGDNTDLIILRNAFDLL 441
IDFK+AAEEEKRLRHDVMAHVHTF HCCPKAA IIHLGATSCYVGDNTDLIILRNA DLL
Sbjct: 72 IDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGATSCYVGDNTDLIILRNALDLL 131
Query: 442 LPKLARVISRLADFAKERADLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDFQNLKRVRD 621
LPKLARVISRLADFAKERA LPTLGFTHFQPAQLTTVGKRCCLWIQDLCMD QNLKRVRD
Sbjct: 132 LPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRD 191
Query: 622 DLRFRGVKGTTGTQASFLQLFEGDDQKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEV 801
DLRFRGVKGTTGTQASFLQLFEGDD KVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEV
Sbjct: 192 DLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEV 251
Query: 802 LSVLASLGASVHKICTDIRLLANLKEIEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL 981
LSVLASLGASVHKICTDIRLLANLKE+EEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL
Sbjct: 252 LSVLASLGASVHKICTDIRLLANLKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHL 311
Query: 982 MTLVMDTLQTASVQWFERTLDDSANRRICLGEAFLTADTIL 1104
MTLVMD LQTASVQWFERTLDDSANRRICL EAFLTADTIL
Sbjct: 312 MTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTIL 352
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,930,628
Number of extensions: 1193083
Number of successful extensions: 4369
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4364
Number of HSP's successfully gapped: 2
Length of query: 368
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 264
Effective length of database: 14,868,908
Effective search space: 3925391712
Effective search space used: 3925391712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007769
(1105 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 414 e-113
>Sscrofa_Chr05
|| Length = 111506441
Score = 414 bits (209), Expect = e-113
Identities = 209/209 (100%)
Strand = Plus / Minus
Query: 198 gcagacattgggtttgcctatcaccgacgaacaaatccaggaaatgagatcacacctgga 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5273983 gcagacattgggtttgcctatcaccgacgaacaaatccaggaaatgagatcacacctgga 5273924
Query: 258 caacatcgacttcaagctggcagctgaggaagagaagcggctccgacatgatgtgatggc 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5273923 caacatcgacttcaagctggcagctgaggaagagaagcggctccgacatgatgtgatggc 5273864
Query: 318 tcatgtgcacacgtttgcccactgctgtccaaaagctgccgctattattcacctcggtgc 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5273863 tcatgtgcacacgtttgcccactgctgtccaaaagctgccgctattattcacctcggtgc 5273804
Query: 378 cacctcctgctatgttggggacaataccg 406
|||||||||||||||||||||||||||||
Sbjct: 5273803 cacctcctgctatgttggggacaataccg 5273775
Score = 398 bits (201), Expect = e-108
Identities = 201/201 (100%)
Strand = Plus / Minus
Query: 1 ttccgctgtggctggtcctgtcccttctagcagggtcgtgtgttcgggatggcggcggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5278037 ttccgctgtggctggtcctgtcccttctagcagggtcgtgtgttcgggatggcggcggga 5277978
Query: 61 ggtgaccatgacgggcacgacagctaccgctcgccgcttgcctcccgctatgccagcccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5277977 ggtgaccatgacgggcacgacagctaccgctcgccgcttgcctcccgctatgccagcccg 5277918
Query: 121 gagatgtgcttcgtgtttagcgacaggtacaaattccggacctggcggcagctctggctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5277917 gagatgtgcttcgtgtttagcgacaggtacaaattccggacctggcggcagctctggctg 5277858
Query: 181 tggctggcggaggctgagcag 201
|||||||||||||||||||||
Sbjct: 5277857 tggctggcggaggctgagcag 5277837
Score = 347 bits (175), Expect = 8e-93
Identities = 175/175 (100%)
Strand = Plus / Minus
Query: 531 gcctgctcagctgaccacagttgggaagcgttgctgtctttggattcaagatctttgcat 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5268737 gcctgctcagctgaccacagttgggaagcgttgctgtctttggattcaagatctttgcat 5268678
Query: 591 ggatttccaaaacttgaagcgtgtccgagatgacctgcgcttccgaggagtgaagggtac 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5268677 ggatttccaaaacttgaagcgtgtccgagatgacctgcgcttccgaggagtgaagggtac 5268618
Query: 651 cactggcactcaggccagcttcctgcagctcttcgagggagatgaccaaaaggta 705
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5268617 cactggcactcaggccagcttcctgcagctcttcgagggagatgaccaaaaggta 5268563
Score = 280 bits (141), Expect = 2e-72
Identities = 147/149 (98%)
Strand = Plus / Minus
Query: 910 ggctcaagcgcaatgccgtacaagcggaacccgatgcgctcagagcggtgctgcagcctc 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5266289 ggctcaagcgcaatgccgtacaagcggaacccgatgcgctcagagcggtgctgcagcctc 5266230
Query: 970 gcccgtcacctgatgacccttgtcatggacacactgcaaacggcgtctgtgcagtggttt 1029
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 5266229 gcccgtcacctgatgacccttgtcatggacccactgcagacggcgtctgtgcagtggttt 5266170
Query: 1030 gaacgcacactggatgacagtgccaaccg 1058
|||||||||||||||||||||||||||||
Sbjct: 5266169 gaacgcacactggatgacagtgccaaccg 5266141
Score = 184 bits (93), Expect = 7e-44
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 748 agggctttcattatcacagggcagacttatactcgaaaagtcgatattgaggtgctctct 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5266955 agggctttcattatcacagggcagacttatactcgaaaagtcgatattgaggtgctctct 5266896
Query: 808 gtgctggccagcttgggggcatcggtgcacaag 840
|||||||||||||||||||||||||||||||||
Sbjct: 5266895 gtgctggccagcttgggggcatcggtgcacaag 5266863
Score = 165 bits (83), Expect = 6e-38
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 449 agcttgccagagtgatctctcggcttgccgactttgccaaggaacgggctgatctaccca 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5270881 agcttgccagagtgatctctcggcttgccgactttgccaaggaacgggctgatctaccca 5270822
Query: 509 ccttaggtttcacgcacttccag 531
|||||||||||||||||||||||
Sbjct: 5270821 ccttaggtttcacgcacttccag 5270799
Score = 145 bits (73), Expect = 6e-32
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 839 agatttgtactgacatacgactcttggcaaacctcaaggagatagaggagcccttcgaaa 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5266498 agatttgtactgacatacgactcttggcaaacctcaaggagatagaggagcccttcgaaa 5266439
Query: 899 aacagcagattgg 911
|||||||||||||
Sbjct: 5266438 aacagcagattgg 5266426
Score = 101 bits (51), Expect = 8e-19
Identities = 51/51 (100%)
Strand = Plus / Minus
Query: 700 aaggtagagcagcttgacaagatggtgacagaaaaggcgggattcaagagg 750
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5268086 aaggtagagcagcttgacaagatggtgacagaaaaggcgggattcaagagg 5268036
Score = 89.7 bits (45), Expect = 3e-15
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 406 gatctgattatccttagaaatgcatttgacctgcttttgccaaag 450
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5271427 gatctgattatccttagaaatgcatttgacctgcttttgccaaag 5271383
Score = 79.8 bits (40), Expect = 3e-12
Identities = 46/48 (95%)
Strand = Plus / Minus
Query: 1058 gacgtatctgtttgggcgaggcatttctcactgcagataccatactga 1105
||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 5264444 gacgtatctgtttggccgaggcatttctcactgcagatacgatactga 5264397
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,337,936
Number of extensions: 174
Number of successful extensions: 174
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 10
Length of query: 1105
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1084
Effective length of database: 2,808,413,156
Effective search space: 3044319861104
Effective search space used: 3044319861104
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)