Animal-Genome cDNA 20110601C-007968


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007968
         (1582 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001040006.1| bridging integrator 1 [Bos taurus].               494   e-139
Alignment   gi|NP_001091599.1| amphiphysin [Bos taurus].                         357   2e-98
Alignment   gi|NP_001076904.1| bridging integrator 2 [Bos taurus].               269   5e-72
Alignment   gi|XP_602799.4| PREDICTED: bridging integrator 2-like [Bos taur...   157   2e-38
Alignment   gi|XP_002704167.1| PREDICTED: amphiphysin-like [Bos taurus].          71   3e-12
Alignment   gi|XP_002704169.1| PREDICTED: amphiphysin-like [Bos taurus].          50   4e-06

>ref|NP_001040006.1| bridging integrator 1 [Bos taurus].
          Length = 433

 Score =  494 bits (1271), Expect = e-139
 Identities = 258/346 (74%), Positives = 270/346 (78%), Gaps = 2/346 (0%)
 Frame = +2

Query: 161  EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQ 340
            EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQL+EGTRLQ
Sbjct: 3    EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQ 62

Query: 341  KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 520
            KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEA+KIAENNDLLWMDYHQKLVDQA
Sbjct: 63   KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEASKIAENNDLLWMDYHQKLVDQA 122

Query: 521  LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTXXXXXXXXXXXXXXXXXXXX 700
            LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT                    
Sbjct: 123  LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQ 182

Query: 701  XVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQ 880
             VFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVL+SLEKQ
Sbjct: 183  KVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLISLEKQ 242

Query: 881  HGSNTFTVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXXXXKSP 1060
            HGSNTFTVKAQPSDN PAKGNK          AATPEIRVNH               KSP
Sbjct: 243  HGSNTFTVKAQPSDNVPAKGNKSPSPPPDGSPAATPEIRVNHEPEPAGAATPGATLPKSP 302

Query: 1061 SQLRKGXXXXXXXK--HTPSKEVKQEQILSLFDDTFVPEISVTTPS 1192
            SQ  +        +   T + E     + ++  +TF   ++ T  S
Sbjct: 303  SQPAEASEAAGAQEPGETTTSEAASSSLPAVVVETFSATVNGTVES 348



 Score =  122 bits (306), Expect = 9e-28
 Identities = 71/140 (50%), Positives = 78/140 (55%)
 Frame = +2

Query: 1163 VPEISVTTPSQPTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEASXXXXXXXX 1342
            VP     +PS P +    + P    +        A P  T    P+QPAEAS        
Sbjct: 258  VPAKGNKSPSPPPDGSPAATPEIRVNHEPEPAGAATPGATLPKSPSQPAEASEAAGAQEP 317

Query: 1343 XXXXXXXXXXXXXXXXXXXXTFSATVNGTVKSGSAAGRLDLPPGFMFKVQAQHDYTATDT 1522
                                TFSATVNGTV+SGS AGRLDLPPGFMFKVQAQHDYTATDT
Sbjct: 318  GETTTSEAASSSLPAVVVE-TFSATVNGTVESGSGAGRLDLPPGFMFKVQAQHDYTATDT 376

Query: 1523 DELALKAGDLVLVIPFQTPE 1582
            DEL LKAGD+VLVIPFQ PE
Sbjct: 377  DELQLKAGDVVLVIPFQNPE 396


>ref|NP_001091599.1| amphiphysin [Bos taurus].
          Length = 684

 Score =  357 bits (916), Expect = 2e-98
 Identities = 185/339 (54%), Positives = 224/339 (66%)
 Frame = +2

Query: 179  VTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQKDLRTY 358
            +  G  A NVQK+L RAQEKVLQKLGKADETKDEQFE+ VQNF +Q +EGTRLQ++LR Y
Sbjct: 4    IKTGIFAKNVQKRLNRAQEKVLQKLGKADETKDEQFEEYVQNFKRQEAEGTRLQRELRGY 63

Query: 359  LASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQALLTMDT 538
            LA++K M EAS KL E L EVYEPDW GR++   + E  D+LW D+HQKLVD +LLT+DT
Sbjct: 64   LAAIKGMQEASMKLTESLHEVYEPDWYGREDVKMVGEKCDVLWEDFHQKLVDGSLLTLDT 123

Query: 539  YLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTXXXXXXXXXXXXXXXXXXXXXVFEEM 718
            YLGQFPDIK+RIAKR RKLVDYDSARHH E+LQ+                     VFEE 
Sbjct: 124  YLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQSSKRKDESRISKAEEEFQKAQKVFEEF 183

Query: 719  NVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTF 898
            NVDLQEELPSLW+ RVGFYVNTF++++ LE  FHKE++ L   L +V+  L  QH    F
Sbjct: 184  NVDLQEELPSLWSRRVGFYVNTFKNVSSLEAKFHKEIAVLCHKLYEVMTKLGDQHADKAF 243

Query: 899  TVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXXXXKSPSQLRKG 1078
            T++  PSD+ P +  K            +P    NH               +SPSQ RKG
Sbjct: 244  TIQGAPSDSGPLRIAKTPSPPEEASPIPSPTASPNH---TLAPASPAPVRPRSPSQTRKG 300

Query: 1079 XXXXXXXKHTPSKEVKQEQILSLFDDTFVPEISVTTPSQ 1195
                   K TP+KE++QE I+S F+D FVPEISVTTPSQ
Sbjct: 301  PPVPPLPKVTPTKELQQENIISFFEDNFVPEISVTTPSQ 339



 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 19/36 (52%), Positives = 30/36 (83%)
 Frame = +2

Query: 1460 DLPPGFMFKVQAQHDYTATDTDELALKAGDLVLVIP 1567
            ++PPGF++KV+  HD+ A ++DEL L+ GD+VLV+P
Sbjct: 607  EVPPGFLYKVETLHDFEAANSDELTLQRGDVVLVVP 642


>ref|NP_001076904.1| bridging integrator 2 [Bos taurus].
          Length = 519

 Score =  269 bits (688), Expect = 5e-72
 Identities = 135/253 (53%), Positives = 169/253 (66%)
 Frame = +2

Query: 167 GSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQKD 346
           G  G  AG  A  VQKK +RAQEKVLQKLGK  ETKDE+FEQ   NF++Q +EG +L KD
Sbjct: 4   GRAGGAAGLFAKQVQKKFSRAQEKVLQKLGKTVETKDERFEQSASNFHQQQAEGHKLYKD 63

Query: 347 LRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQALL 526
           L+ +L++VK MHE+SK+++E LQE+Y   W G +E   I  NNDLLW DY +KL DQ L 
Sbjct: 64  LKNFLSAVKVMHESSKRVSETLQEIYSSKWDGHEELKAIVANNDLLWEDYEEKLADQVLR 123

Query: 527 TMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTXXXXXXXXXXXXXXXXXXXXXV 706
           TM+ Y+ QF +IK RIAKRGRKLVDYDSARHH E++Q                      V
Sbjct: 124 TMENYVAQFSEIKERIAKRGRKLVDYDSARHHLEAVQNAKKKDEAKTAKAEEEFNKAQLV 183

Query: 707 FEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHG 886
           FE++N +L EELP L+NSR+G YV  FQ+I+ L + F++EMSKLN NL +V+  LEKQH 
Sbjct: 184 FEDLNQELLEELPVLYNSRIGCYVTIFQNISNLRDVFYREMSKLNHNLYEVMSKLEKQHS 243

Query: 887 SNTFTVKAQPSDN 925
              F VK   S N
Sbjct: 244 DKVFVVKGLSSSN 256


>ref|XP_602799.4| PREDICTED: bridging integrator 2-like [Bos taurus].
          Length = 407

 Score =  157 bits (397), Expect = 2e-38
 Identities = 75/133 (56%), Positives = 95/133 (71%)
 Frame = +2

Query: 167 GSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQKD 346
           G  G  AG  A  VQKK +RAQEKVLQKLGK  ETKDE+FEQ   NF++Q +EG +L KD
Sbjct: 4   GRAGGAAGLFAKQVQKKFSRAQEKVLQKLGKTVETKDERFEQSASNFHQQQAEGHKLYKD 63

Query: 347 LRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQALL 526
           L+ +L++VK MHE+SK+++E LQE+Y   W G +E   I  NNDLLW DY +KL DQ L 
Sbjct: 64  LKNFLSAVKVMHESSKRVSETLQEIYSSKWDGHEELKAIVANNDLLWEDYEEKLADQVLR 123

Query: 527 TMDTYLGQFPDIK 565
           TM+ Y+ QF +IK
Sbjct: 124 TMENYVAQFSEIK 136


>ref|XP_002704167.1| PREDICTED: amphiphysin-like [Bos taurus].
          Length = 333

 Score = 70.9 bits (172), Expect = 3e-12
 Identities = 34/46 (73%), Positives = 38/46 (82%)
 Frame = +2

Query: 179 VTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQ 316
           +  G  A NVQK+L RAQEKVLQKLGKADETKDEQFE+ VQNF +Q
Sbjct: 136 IKTGIFAKNVQKRLNRAQEKVLQKLGKADETKDEQFEEYVQNFKRQ 181



 Score = 69.7 bits (169), Expect = 7e-12
 Identities = 36/71 (50%), Positives = 47/71 (66%)
 Frame = +2

Query: 257 KADETKDEQFEQCVQNFNKQLSEGTRLQKDLRTYLASVKAMHEASKKLNECLQEVYEPDW 436
           KAD  K E  ++C+       +EGTRLQ++LR YLA++K M EAS KL E L EVYEPDW
Sbjct: 236 KADLGKHEA-QECIH------AEGTRLQRELRGYLAAIKGMQEASMKLTESLHEVYEPDW 288

Query: 437 PGRDEANKIAE 469
            GR++   + E
Sbjct: 289 YGREDVKMVGE 299


>ref|XP_002704169.1| PREDICTED: amphiphysin-like [Bos taurus].
          Length = 367

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 19/36 (52%), Positives = 30/36 (83%)
 Frame = +2

Query: 1460 DLPPGFMFKVQAQHDYTATDTDELALKAGDLVLVIP 1567
            ++PPGF++KV+  HD+ A ++DEL L+ GD+VLV+P
Sbjct: 290  EVPPGFLYKVETLHDFEAANSDELTLQRGDVVLVVP 325


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 56,215,665
Number of extensions: 1649013
Number of successful extensions: 10111
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 10020
Number of HSP's successfully gapped: 10
Length of query: 527
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 420
Effective length of database: 14,140,958
Effective search space: 5939202360
Effective search space used: 5939202360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007968
         (1582 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_540990.2| PREDICTED: similar to Myc box dependent interac...   662   0.0  
Alignment   gi|XP_533085.2| PREDICTED: similar to Amphiphysin [Canis famili...   327   2e-89
Alignment   gi|XP_543665.2| PREDICTED: similar to bridging integrator 2 [Ca...   266   5e-71

>ref|XP_540990.2| PREDICTED: similar to Myc box dependent interacting protein 1
            (Bridging integrator 1) (Amphiphysin-like protein)
            (Amphiphysin II) (Box-dependent myc-interacting
            protein-1) [Canis familiaris].
          Length = 695

 Score =  662 bits (1708), Expect = 0.0
 Identities = 368/553 (66%), Positives = 374/553 (67%), Gaps = 81/553 (14%)
 Frame = +2

Query: 167  GSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQKD 346
            G +G   G+     QKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQL+EGTRLQKD
Sbjct: 108  GQQGGDGGEDRQQRQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQKD 167

Query: 347  LRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQALL 526
            LRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLW+DYHQKLVDQALL
Sbjct: 168  LRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWLDYHQKLVDQALL 227

Query: 527  TMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT---------------------- 640
            TMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT                      
Sbjct: 228  TMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKPVSLLEKAAPQ 287

Query: 641  ---------XXXXXXXXXXXXXXXXXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTFQS 793
                                          VFEEMNVDLQEELPSLWNSRVGFYVNTFQS
Sbjct: 288  WCQGKLQAHLVAQTNLLRNQAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQS 347

Query: 794  IAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKGNKXXXXXXXXX 973
            IAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKGNK         
Sbjct: 348  IAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKGNKSPSPPPDGS 407

Query: 974  XAATPEIRVNHXXXXXXXXXXXXXXXKSPSQLRKGXXXXXXXKHTPSKEVKQEQILSLFD 1153
             AATPEIRVNH               KSPSQLRKG       KHTPSKEVKQEQILSLFD
Sbjct: 408  PAATPEIRVNH--EPEPSAAAGAALPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFD 465

Query: 1154 DTFVPEISVTTPSQ--------------------------------------------PT 1201
            DTFVPEISVTTPSQ                                            PT
Sbjct: 466  DTFVPEISVTTPSQFEVPGPFSEQASLLDLDFDPLPPVASPVKAPTPSGQSIPWDLWEPT 525

Query: 1202 ESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEAS------XXXXXXXXXXXXXXX 1363
            ESPAGSLP GEPSA EGTFAVAWPSQTAEPGPAQPAEAS                     
Sbjct: 526  ESPAGSLPPGEPSATEGTFAVAWPSQTAEPGPAQPAEASEVAGGTPPAAGAQEPGETAAS 585

Query: 1364 XXXXXXXXXXXXXTFSATVNGTVKSGSAAGRLDLPPGFMFKVQAQHDYTATDTDELALKA 1543
                         TFSATVNGTV+ G  AGRLDLPPGFMFKVQAQHDY ATDTDEL LKA
Sbjct: 586  EAASSSLPAVVVETFSATVNGTVEGGGGAGRLDLPPGFMFKVQAQHDYVATDTDELQLKA 645

Query: 1544 GDLVLVIPFQTPE 1582
            GD+VLVIPFQ PE
Sbjct: 646  GDVVLVIPFQNPE 658


>ref|XP_533085.2| PREDICTED: similar to Amphiphysin [Canis familiaris].
          Length = 836

 Score =  327 bits (838), Expect = 2e-89
 Identities = 172/322 (53%), Positives = 209/322 (64%), Gaps = 3/322 (0%)
 Frame = +2

Query: 239  VLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQKDLRTYLASVKAMHEASKKLNECLQE 418
            VLQKLGKADETKDEQFE+ VQNF +Q +EGTRLQ++LR YLA++K M EAS KL E L E
Sbjct: 40   VLQKLGKADETKDEQFEEYVQNFKRQEAEGTRLQRELRGYLAAIKGMQEASMKLTESLHE 99

Query: 419  VYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQALLTMDTYLGQFPDIKSRIAKRGRKLV 598
            VYEPDW GR++   + E  D+LW D+HQKLVD +LLT+DTYLGQFPDIK+RIAKR RKLV
Sbjct: 100  VYEPDWYGREDVKMVGEKCDVLWEDFHQKLVDGSLLTLDTYLGQFPDIKNRIAKRSRKLV 159

Query: 599  DYDSARHHYESLQTXXXXXXXXXXXXXXXXXXXXXVFEEMNVDLQEELPSLWNSRVGFYV 778
            DYDSARHH E+LQ+                     VFEE NVDLQEELPSLW+ RVGFYV
Sbjct: 160  DYDSARHHLEALQSSKRKDESRISKAEEEFQKAQKVFEEFNVDLQEELPSLWSRRVGFYV 219

Query: 779  NTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQP---SDNAPAKGNKX 949
            NTF++++ LE  FHKE++ L   L +V+  L  QH    FT++  P    D+ P +  K 
Sbjct: 220  NTFKNVSSLEAKFHKEIAVLCHKLYEVMTKLGDQHADKAFTIQGAPRARCDSGPLRIAKT 279

Query: 950  XXXXXXXXXAATPEIRVNHXXXXXXXXXXXXXXXKSPSQLRKGXXXXXXXKHTPSKEVKQ 1129
                       +P    NH               +SPSQ RKG       K TP+KE++Q
Sbjct: 280  PSPPEEPSPIPSPTASPNH---TLAPASPAPARPRSPSQTRKGPPVPPLPKVTPTKELQQ 336

Query: 1130 EQILSLFDDTFVPEISVTTPSQ 1195
            E I+S F+D FVPEISVTTPSQ
Sbjct: 337  ENIISFFEDNFVPEISVTTPSQ 358



 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 20/37 (54%), Positives = 31/37 (83%)
 Frame = +2

Query: 1457 LDLPPGFMFKVQAQHDYTATDTDELALKAGDLVLVIP 1567
            L++PPGF++KV+  HD+ A ++DEL L+ GD+VLV+P
Sbjct: 758  LEVPPGFLYKVETLHDFEAANSDELTLQRGDVVLVVP 794


>ref|XP_543665.2| PREDICTED: similar to bridging integrator 2 [Canis familiaris].
          Length = 497

 Score =  266 bits (679), Expect = 5e-71
 Identities = 134/251 (53%), Positives = 170/251 (67%)
 Frame = +2

Query: 167 GSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQKD 346
           G  G  AG  A  VQKKL+RAQEKVLQKLGK  ETKDE+FEQ   NF  Q +EG +L KD
Sbjct: 53  GRAGGAAGLFAKQVQKKLSRAQEKVLQKLGKTVETKDERFEQSANNFYHQQAEGQKLYKD 112

Query: 347 LRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQALL 526
           L+ +L++VK MHE+SK+++E LQE+Y  +W G +E   I  NNDLLW DY +KL DQAL 
Sbjct: 113 LKNFLSAVKVMHESSKRVSETLQEIYSSEWDGHEELKAIVGNNDLLWEDYEEKLADQALR 172

Query: 527 TMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTXXXXXXXXXXXXXXXXXXXXXV 706
           TM+ Y+ QF +IK RIAKRGRKLVDYDSARHH E++Q                      V
Sbjct: 173 TMENYVAQFSEIKERIAKRGRKLVDYDSARHHLEAVQNAKKKDEAKTAKAEEEFNKAQSV 232

Query: 707 FEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHG 886
           FE++N +L EELP L++SR+G YV  FQ+I+ L + F++EMSKLN +L +V+  LEKQH 
Sbjct: 233 FEDLNQELLEELPVLYHSRIGCYVTIFQNISNLRDVFYREMSKLNHSLYEVMSKLEKQHS 292

Query: 887 SNTFTVKAQPS 919
           +  F VK   S
Sbjct: 293 NKVFVVKGVSS 303


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 58,592,980
Number of extensions: 1699772
Number of successful extensions: 10146
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 10080
Number of HSP's successfully gapped: 6
Length of query: 527
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 420
Effective length of database: 15,307,552
Effective search space: 6429171840
Effective search space used: 6429171840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007968
         (1582 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003133335.2| PREDICTED: myc box-dependent-interacting pro...   698   0.0  
Alignment   gi|NP_001090909.1| myc box-dependent-interacting protein 1 [Sus...   587   e-168
Alignment   gi|XP_003126186.1| PREDICTED: bridging integrator 2 [Sus scrofa].    218   7e-57
Alignment   gi|XP_003361993.1| PREDICTED: bridging integrator 2-like, parti...   206   3e-53
Alignment   gi|XP_003357576.1| PREDICTED: amphiphysin-like [Sus scrofa].         111   1e-24
Alignment   gi|XP_003357575.1| PREDICTED: hypothetical protein LOC100626143...   110   3e-24

>ref|XP_003133335.2| PREDICTED: myc box-dependent-interacting protein 1-like, partial [Sus
            scrofa].
          Length = 545

 Score =  698 bits (1802), Expect = 0.0
 Identities = 383/543 (70%), Positives = 386/543 (71%), Gaps = 75/543 (13%)
 Frame = +2

Query: 161  EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQ 340
            EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQ
Sbjct: 3    EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQ 62

Query: 341  KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 520
            KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA
Sbjct: 63   KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 122

Query: 521  LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT-------------------- 640
            LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHH+ESLQT                    
Sbjct: 123  LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTAKKKDEAKIAKPVSLLEKAA 182

Query: 641  -----------XXXXXXXXXXXXXXXXXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTF 787
                                            VFEEMNVDLQEELPSLWNSRVGFYVNTF
Sbjct: 183  PQWCQGKLQAHLVAQTNLLRNQAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTF 242

Query: 788  QSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKGNKXXXXXXX 967
            QSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKGNK       
Sbjct: 243  QSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKGNKSPSPPPD 302

Query: 968  XXXAATPEIRVNHXXXXXXXXXXXXXXXKSPSQLRKGXXXXXXXKHTPSKEVKQEQILSL 1147
               AATPEIRVNH               KSPSQLRKG       KHTPSKEVKQEQILSL
Sbjct: 303  GSPAATPEIRVNHEPEPAGAATPGAALPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSL 362

Query: 1148 FDDTFVPEISVTTPSQ-------------------------------------------- 1195
            FDDTFVPEISVTTPSQ                                            
Sbjct: 363  FDDTFVPEISVTTPSQFEAPGPFSEQASLLDLDFDPLPPVASPVKAPTPSGQSIPWDLWE 422

Query: 1196 PTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEASXXXXXXXXXXXXXXXXXXX 1375
            PTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEAS                   
Sbjct: 423  PTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEASEVAGGAQEPGEPAASEAAS 482

Query: 1376 XXXXXXXXXTFSATVNGTVKSGSAAGRLDLPPGFMFKVQAQHDYTATDTDELALKAGDLV 1555
                     TFSATVNGTV+SGSAAGRLDLPPGFMFKVQAQHDYTATDTDEL LKAGD+V
Sbjct: 483  SSLPAVVVETFSATVNGTVESGSAAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVV 542

Query: 1556 LVI 1564
            LVI
Sbjct: 543  LVI 545


>ref|NP_001090909.1| myc box-dependent-interacting protein 1 [Sus scrofa].
          Length = 434

 Score =  587 bits (1512), Expect = e-168
 Identities = 322/474 (67%), Positives = 333/474 (70%)
 Frame = +2

Query: 161  EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQ 340
            EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQ
Sbjct: 3    EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQ 62

Query: 341  KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 520
            KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA
Sbjct: 63   KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 122

Query: 521  LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTXXXXXXXXXXXXXXXXXXXX 700
            LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT                    
Sbjct: 123  LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQ 182

Query: 701  XVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQ 880
             VFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQ
Sbjct: 183  KVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQ 242

Query: 881  HGSNTFTVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXXXXKSP 1060
            HGSNTFTVKAQPSDNAPAKGNK          AATPEIRVNH               KSP
Sbjct: 243  HGSNTFTVKAQPSDNAPAKGNKSPSPPPDGSPAATPEIRVNHEPEPAGAATPGAALPKSP 302

Query: 1061 SQLRKGXXXXXXXKHTPSKEVKQEQILSLFDDTFVPEISVTTPSQPTESPAGSLPSGEPS 1240
            SQ                                        P++ +E   G+   GEP+
Sbjct: 303  SQ----------------------------------------PAEASEVAGGAQEPGEPA 322

Query: 1241 AAEGTFAVAWPSQTAEPGPAQPAEASXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFSATV 1420
            A+E   + + P+   E                                      TFSATV
Sbjct: 323  ASEAA-SSSLPAVVVE--------------------------------------TFSATV 343

Query: 1421 NGTVKSGSAAGRLDLPPGFMFKVQAQHDYTATDTDELALKAGDLVLVIPFQTPE 1582
            NGTV+SGSAAGRLDLPPGFMFKVQAQHDYTATDTDEL LKAGD+VLVIPFQ PE
Sbjct: 344  NGTVESGSAAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPE 397


>ref|XP_003126186.1| PREDICTED: bridging integrator 2 [Sus scrofa].
          Length = 508

 Score =  218 bits (555), Expect = 7e-57
 Identities = 115/251 (45%), Positives = 148/251 (58%)
 Frame = +2

Query: 167 GSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQKD 346
           G  G  AG  A  VQK L RAQEK                           +EG +L KD
Sbjct: 4   GKTGGVAGLFAKQVQKTLNRAQEK---------------------------AEGHKLYKD 36

Query: 347 LRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQALL 526
           L+ +L++VK MHE+SK+++E LQE+Y  +W G ++   I  NNDLLW DY +KL DQAL 
Sbjct: 37  LKNFLSAVKVMHESSKRVSETLQEIYSSEWDGHEDLKAIVGNNDLLWEDYEEKLADQALR 96

Query: 527 TMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTXXXXXXXXXXXXXXXXXXXXXV 706
           TM+ Y+ QF ++K RIAKRGRKLVDYDSARHH E++Q                      V
Sbjct: 97  TMENYVAQFSEVKERIAKRGRKLVDYDSARHHLEAVQNAKKKDEAKTAKAEEEFNKAQIV 156

Query: 707 FEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHG 886
           FE++N +L EELP L+NSR+G YV  FQ+I+ L + F++EMSKLN NL +V+  LEKQH 
Sbjct: 157 FEDLNKELLEELPILYNSRIGCYVTIFQNISNLRDVFYREMSKLNHNLYEVMSKLEKQHS 216

Query: 887 SNTFTVKAQPS 919
              F VK   S
Sbjct: 217 DKVFVVKGLSS 227


>ref|XP_003361993.1| PREDICTED: bridging integrator 2-like, partial [Sus scrofa].
          Length = 488

 Score =  206 bits (524), Expect = 3e-53
 Identities = 128/330 (38%), Positives = 173/330 (52%), Gaps = 3/330 (0%)
 Frame = +2

Query: 320  SEGTRLQKDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYH 499
            +EG +L KDL+ +L++VK MHE+SK+++E LQE+Y  +W G ++   I  NNDLLW DY 
Sbjct: 53   AEGHKLYKDLKNFLSAVKVMHESSKRVSETLQEIYSSEWDGHEDLKAIVGNNDLLWEDYE 112

Query: 500  QKLVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTXXXXXXXXXXXXX 679
            +KL DQAL TM+ Y+ QF ++K RIAKRGRKLVDYDSARHH E++Q              
Sbjct: 113  EKLADQALRTMENYVAQFSEVKERIAKRGRKLVDYDSARHHLEAVQNAKKKDEAKTAKAE 172

Query: 680  XXXXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDV 859
                    VFE++N +L EELP L+NSR+  YV  FQ+I+ L + F++EMSKLN NL +V
Sbjct: 173  EEFNKAQIVFEDLNKELLEELPILYNSRICCYVTIFQNISNLRDVFYREMSKLNHNLYEV 232

Query: 860  LVSLEKQHGSNTFTVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXX 1039
            +  LEKQH    F VK   S      G++           +  E+               
Sbjct: 233  MSKLEKQHSDKVFVVKGLSS------GSRRSLVISSPVRTSAEEL--------------- 271

Query: 1040 XXXXKSPSQLRKGXXXXXXXKHTPSK--EVKQEQI-LSLFDDTFVPEISVTTPSQPTESP 1210
                 S S   +G       K  P K  EV++E    S  ++  +P  +  TP+QP    
Sbjct: 272  ----ASDSAQEEG---NPEMKEEPFKDQEVEEEAAGSSSGEEEPLPACNGPTPAQPA--- 321

Query: 1211 AGSLPSGEPSAAEGTFAVAWPSQTAEPGPA 1300
                PS  P A E    VA  S    PG A
Sbjct: 322  ----PSAAPEAGEAQEEVALCSPAPAPGGA 347


>ref|XP_003357576.1| PREDICTED: amphiphysin-like [Sus scrofa].
          Length = 712

 Score =  111 bits (278), Expect = 1e-24
 Identities = 60/145 (41%), Positives = 80/145 (55%)
 Frame = +2

Query: 761  RVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKG 940
            RVGFYVNTF++++ LE  FHKE++ L   L +V+  L  QH    FT++  PSD+ P + 
Sbjct: 232  RVGFYVNTFKNVSSLEAKFHKEIAVLCHKLYEVMTKLGDQHADKAFTIQGAPSDSGPLRI 291

Query: 941  NKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXXXXKSPSQLRKGXXXXXXXKHTPSKE 1120
             K            +P    NH               +SPSQ RKG       K TP+KE
Sbjct: 292  AKTPSPPEEPSPIPSPTASPNH---TLAPASPAPARPRSPSQTRKGPPVPPLPKVTPTKE 348

Query: 1121 VKQEQILSLFDDTFVPEISVTTPSQ 1195
            ++QE I++ F+D FVPEISVTTPSQ
Sbjct: 349  LQQENIINFFEDNFVPEISVTTPSQ 373



 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 19/36 (52%), Positives = 30/36 (83%)
 Frame = +2

Query: 1460 DLPPGFMFKVQAQHDYTATDTDELALKAGDLVLVIP 1567
            ++PPGF++KV+  HD+ A ++DEL L+ GD+VLV+P
Sbjct: 635  EVPPGFLYKVETLHDFEAANSDELTLQRGDVVLVVP 670


>ref|XP_003357575.1| PREDICTED: hypothetical protein LOC100626143, partial [Sus scrofa].
          Length = 405

 Score =  110 bits (274), Expect = 3e-24
 Identities = 52/77 (67%), Positives = 62/77 (80%)
 Frame = +2

Query: 239 VLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQKDLRTYLASVKAMHEASKKLNECLQE 418
           VLQKLGKADETKDEQFE+ VQNF +Q +EGTRLQ++LR YLA++K M EAS KL E L E
Sbjct: 329 VLQKLGKADETKDEQFEEYVQNFKRQEAEGTRLQRELRGYLAAIKGMQEASMKLTESLHE 388

Query: 419 VYEPDWPGRDEANKIAE 469
           VYEPDW GR++   + E
Sbjct: 389 VYEPDWYGREDVKMVGE 405



 Score = 72.8 bits (177), Expect = 5e-13
 Identities = 41/82 (50%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
 Frame = +2

Query: 533 DTYLGQFPDI--KSRIAKRGRKLVDYDSARHHYESLQTXXXXXXXXXXXXXXXXXXXXXV 706
           + ++G+F     ++RIAKR RKLVDYDSARHH E+LQ+                     V
Sbjct: 189 EVHIGKFQHSVQQNRIAKRSRKLVDYDSARHHLEALQSSKRKDESRISKAEEEFQKAQKV 248

Query: 707 FEEMNVDLQEELPSLWNSRVGF 772
           FEE NVDLQEELPSLW SR G+
Sbjct: 249 FEEFNVDLQEELPSLW-SRCGY 269


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,378,033
Number of extensions: 1070916
Number of successful extensions: 6446
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6395
Number of HSP's successfully gapped: 11
Length of query: 527
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 423
Effective length of database: 8,754,644
Effective search space: 3703214412
Effective search space used: 3703214412
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007968
         (1582 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_033798.1| myc box-dependent-interacting protein 1 isoform...   684   0.0  
Alignment   gi|NP_001076803.1| myc box-dependent-interacting protein 1 isof...   647   0.0  
Alignment   gi|NP_778172.1| amphiphysin [Mus musculus].                          357   2e-98

>ref|NP_033798.1| myc box-dependent-interacting protein 1 isoform 1 [Mus musculus].
          Length = 588

 Score =  684 bits (1764), Expect = 0.0
 Identities = 373/549 (67%), Positives = 382/549 (69%), Gaps = 75/549 (13%)
 Frame = +2

Query: 161  EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQ 340
            EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQL+EGTRLQ
Sbjct: 3    EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQ 62

Query: 341  KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 520
            KDLRTYLASVKAMHEASKKL+ECLQEVYEP+WPGRDEANKIAENNDLLWMDYHQKLVDQA
Sbjct: 63   KDLRTYLASVKAMHEASKKLSECLQEVYEPEWPGRDEANKIAENNDLLWMDYHQKLVDQA 122

Query: 521  LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT-------------------- 640
            LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT                    
Sbjct: 123  LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKPVSLLEKAA 182

Query: 641  -----------XXXXXXXXXXXXXXXXXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTF 787
                                            VFEEMNVDLQEELPSLWNSRVGFYVNTF
Sbjct: 183  PQWCQGKLQAHLVAQTNLLRNQAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTF 242

Query: 788  QSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKGNKXXXXXXX 967
            QSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAP KGNK       
Sbjct: 243  QSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPEKGNKSPSPPPD 302

Query: 968  XXXAATPEIRVNHXXXXXXXXXXXXXXXKSPSQLRKGXXXXXXXKHTPSKEVKQEQILSL 1147
               AATPEIRVNH               KSPSQLRKG       KHTPSKE+KQEQILSL
Sbjct: 303  GSPAATPEIRVNHEPEPASGASPGATIPKSPSQLRKGPPVPPPPKHTPSKEMKQEQILSL 362

Query: 1148 FDDTFVPEISVTTPSQ-------------------------------------------- 1195
            FDD FVPEISVTTPSQ                                            
Sbjct: 363  FDDAFVPEISVTTPSQFEAPGPFSEQASLLDLDFEPLPPVASPVKAPTPSGQSIPWDLWE 422

Query: 1196 PTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEASXXXXXXXXXXXXXXXXXXX 1375
            PTES AG LPSGEPS+AEG+FAVAWPSQTAEPGPAQPAEAS                   
Sbjct: 423  PTESQAGILPSGEPSSAEGSFAVAWPSQTAEPGPAQPAEASEVVGGAQEPGETAASEATS 482

Query: 1376 XXXXXXXXXTFSATVNGTVKSGSAAGRLDLPPGFMFKVQAQHDYTATDTDELALKAGDLV 1555
                     TFSATVNG V+  +  GRLDLPPGFMFKVQAQHDYTATDTDEL LKAGD+V
Sbjct: 483  SSLPAVVVETFSATVNGAVEGSAGTGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVV 542

Query: 1556 LVIPFQTPE 1582
            LVIPFQ PE
Sbjct: 543  LVIPFQNPE 551


>ref|NP_001076803.1| myc box-dependent-interacting protein 1 isoform 2 [Mus musculus].
          Length = 477

 Score =  647 bits (1670), Expect = 0.0
 Identities = 346/477 (72%), Positives = 360/477 (75%), Gaps = 3/477 (0%)
 Frame = +2

Query: 161  EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQ 340
            EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQL+EGTRLQ
Sbjct: 3    EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQ 62

Query: 341  KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 520
            KDLRTYLASVKAMHEASKKL+ECLQEVYEP+WPGRDEANKIAENNDLLWMDYHQKLVDQA
Sbjct: 63   KDLRTYLASVKAMHEASKKLSECLQEVYEPEWPGRDEANKIAENNDLLWMDYHQKLVDQA 122

Query: 521  LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTXXXXXXXXXXXXXXXXXXXX 700
            LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT                    
Sbjct: 123  LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQ 182

Query: 701  XVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQ 880
             VFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQ
Sbjct: 183  KVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQ 242

Query: 881  HGSNTFTVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXXXXKSP 1060
            HGSNTFTVKAQPSDNAP KGNK          AATPEIRVNH               KSP
Sbjct: 243  HGSNTFTVKAQPSDNAPEKGNKSPSPPPDGSPAATPEIRVNHEPEPASGASPGATIPKSP 302

Query: 1061 SQLRKGXXXXXXXKHTPSKEVKQEQILSLFDDTFVPEISVTTPSQPTESP---AGSLPSG 1231
            SQLRKG       KHTPSKE+KQEQILSLFDD FVPEISVTTPSQP E+     G+   G
Sbjct: 303  SQLRKGPPVPPPPKHTPSKEMKQEQILSLFDDAFVPEISVTTPSQPAEASEVVGGAQEPG 362

Query: 1232 EPSAAEGTFAVAWPSQTAEPGPAQPAEASXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFS 1411
            E +A+E T + + P+   E                                      TFS
Sbjct: 363  ETAASEAT-SSSLPAVVVE--------------------------------------TFS 383

Query: 1412 ATVNGTVKSGSAAGRLDLPPGFMFKVQAQHDYTATDTDELALKAGDLVLVIPFQTPE 1582
            ATVNG V+  +  GRLDLPPGFMFKVQAQHDYTATDTDEL LKAGD+VLVIPFQ PE
Sbjct: 384  ATVNGAVEGSAGTGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPE 440


>ref|NP_778172.1| amphiphysin [Mus musculus].
          Length = 686

 Score =  357 bits (915), Expect = 2e-98
 Identities = 184/339 (54%), Positives = 225/339 (66%)
 Frame = +2

Query: 179  VTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQKDLRTY 358
            +  G  A NVQK+L RAQEKVLQKLGKADETKDEQFE+ VQNF +Q +EGTRLQ++LR Y
Sbjct: 4    IKTGIFAKNVQKRLNRAQEKVLQKLGKADETKDEQFEEYVQNFKRQEAEGTRLQRELRGY 63

Query: 359  LASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQALLTMDT 538
            LA++K M EAS KL E L EVYEPDW GR++   + E  D+LW D+HQKLVD +LLT+DT
Sbjct: 64   LAAIKGMQEASMKLTESLHEVYEPDWYGREDVKMVGEKCDVLWEDFHQKLVDGSLLTLDT 123

Query: 539  YLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTXXXXXXXXXXXXXXXXXXXXXVFEEM 718
            YLGQFPDIK+RIAKR RKLVDYDSARHH E+LQ+                     VFEE 
Sbjct: 124  YLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQSSKRKDESRISKAEEEFQKAQKVFEEF 183

Query: 719  NVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTF 898
            NVDLQEELPSLW+SRVGFYVNTF++++ LE  FHKE++ L   L +V+  L  QH    F
Sbjct: 184  NVDLQEELPSLWSSRVGFYVNTFKNVSSLEAKFHKEIAVLCHKLYEVMTKLGDQHADKAF 243

Query: 899  TVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXXXXKSPSQLRKG 1078
            +++  PSD+ P +  K            +P    NH               +SPSQ RKG
Sbjct: 244  SIQGAPSDSGPLRIAKTPSPPEEPSPLPSPTASPNH---TLAPASPAPVRPRSPSQTRKG 300

Query: 1079 XXXXXXXKHTPSKEVKQEQILSLFDDTFVPEISVTTPSQ 1195
                   K TP+KE+KQE I++ F+D FVPEI+VTTPSQ
Sbjct: 301  PPVPPLPKVTPTKELKQENIINFFEDNFVPEINVTTPSQ 339



 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 23/53 (43%), Positives = 38/53 (71%)
 Frame = +2

Query: 1409 SATVNGTVKSGSAAGRLDLPPGFMFKVQAQHDYTATDTDELALKAGDLVLVIP 1567
            +  V+ ++ +G A    +LPPGF++KV+  HD+ A ++DEL L+ GD+VLV+P
Sbjct: 594  AGAVDASLSAGDATQ--ELPPGFLYKVETLHDFEAANSDELNLQRGDVVLVVP 644


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,093,868
Number of extensions: 1348285
Number of successful extensions: 7446
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7398
Number of HSP's successfully gapped: 7
Length of query: 527
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 421
Effective length of database: 12,433,743
Effective search space: 5234605803
Effective search space used: 5234605803
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007968
         (1582 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_647597.1| myc box-dependent-interacting protein 1 isoform...   728   0.0  
Alignment   gi|NP_647593.1| myc box-dependent-interacting protein 1 isoform...   690   0.0  
Alignment   gi|NP_647598.1| myc box-dependent-interacting protein 1 isoform...   655   0.0  
Alignment   gi|NP_647596.1| myc box-dependent-interacting protein 1 isoform...   645   0.0  
Alignment   gi|NP_647599.1| myc box-dependent-interacting protein 1 isoform...   641   0.0  
Alignment   gi|NP_647594.1| myc box-dependent-interacting protein 1 isoform...   639   0.0  
Alignment   gi|NP_647595.1| myc box-dependent-interacting protein 1 isoform...   625   e-179
Alignment   gi|NP_647600.1| myc box-dependent-interacting protein 1 isoform...   567   e-162
Alignment   gi|NP_004296.1| myc box-dependent-interacting protein 1 isoform...   557   e-159
Alignment   gi|NP_647601.1| myc box-dependent-interacting protein 1 isoform...   491   e-139

>ref|NP_647597.1| myc box-dependent-interacting protein 1 isoform 5 [Homo sapiens].
          Length = 518

 Score =  728 bits (1878), Expect = 0.0
 Identities = 382/480 (79%), Positives = 387/480 (80%), Gaps = 6/480 (1%)
 Frame = +2

Query: 161  EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQ 340
            EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQL+EGTRLQ
Sbjct: 3    EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQ 62

Query: 341  KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 520
            KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA
Sbjct: 63   KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 122

Query: 521  LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTXXXXXXXXXXXXXXXXXXXX 700
            LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT                    
Sbjct: 123  LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQ 182

Query: 701  XVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQ 880
             VFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV LEKQ
Sbjct: 183  KVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVGLEKQ 242

Query: 881  HGSNTFTVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXXXXKSP 1060
            HGSNTFTVKAQPSDNAPAKGNK          AATPEIRVNH               KSP
Sbjct: 243  HGSNTFTVKAQPSDNAPAKGNKSPSPPDGSP-AATPEIRVNHEPEPAGGATPGATLPKSP 301

Query: 1061 SQLRKGXXXXXXXKHTPSKEVKQEQILSLFDDTFVPEISVTTPSQPTESPAGSLPSGEPS 1240
            SQLRKG       KHTPSKEVKQEQILSLF+DTFVPEISVTTPSQPTESPAGSLPSGEPS
Sbjct: 302  SQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQPTESPAGSLPSGEPS 361

Query: 1241 AAEGTFAVAWPSQTAEPGPAQPAEASXXXXXXXXXXXXXXXXXXXXXXXXXXXX------ 1402
            AAEGTFAV+WPSQTAEPGPAQPAEAS                                  
Sbjct: 362  AAEGTFAVSWPSQTAEPGPAQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVE 421

Query: 1403 TFSATVNGTVKSGSAAGRLDLPPGFMFKVQAQHDYTATDTDELALKAGDLVLVIPFQTPE 1582
            TF ATVNGTV+ GS AGRLDLPPGFMFKVQAQHDYTATDTDEL LKAGD+VLVIPFQ PE
Sbjct: 422  TFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPE 481


>ref|NP_647593.1| myc box-dependent-interacting protein 1 isoform 1 [Homo sapiens].
          Length = 593

 Score =  690 bits (1781), Expect = 0.0
 Identities = 382/555 (68%), Positives = 387/555 (69%), Gaps = 81/555 (14%)
 Frame = +2

Query: 161  EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQ 340
            EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQL+EGTRLQ
Sbjct: 3    EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQ 62

Query: 341  KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 520
            KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA
Sbjct: 63   KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 122

Query: 521  LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT-------------------- 640
            LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT                    
Sbjct: 123  LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKPVSLLEKAA 182

Query: 641  -----------XXXXXXXXXXXXXXXXXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTF 787
                                            VFEEMNVDLQEELPSLWNSRVGFYVNTF
Sbjct: 183  PQWCQGKLQAHLVAQTNLLRNQAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTF 242

Query: 788  QSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKGNKXXXXXXX 967
            QSIAGLEENFHKEMSKLNQNLNDVLV LEKQHGSNTFTVKAQPSDNAPAKGNK       
Sbjct: 243  QSIAGLEENFHKEMSKLNQNLNDVLVGLEKQHGSNTFTVKAQPSDNAPAKGNK-SPSPPD 301

Query: 968  XXXAATPEIRVNHXXXXXXXXXXXXXXXKSPSQLRKGXXXXXXXKHTPSKEVKQEQILSL 1147
               AATPEIRVNH               KSPSQLRKG       KHTPSKEVKQEQILSL
Sbjct: 302  GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSL 361

Query: 1148 FDDTFVPEISVTTPSQ-------------------------------------------- 1195
            F+DTFVPEISVTTPSQ                                            
Sbjct: 362  FEDTFVPEISVTTPSQFEAPGPFSEQASLLDLDFDPLPPVTSPVKAPTPSGQSIPWDLWE 421

Query: 1196 PTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEAS------XXXXXXXXXXXXX 1357
            PTESPAGSLPSGEPSAAEGTFAV+WPSQTAEPGPAQPAEAS                   
Sbjct: 422  PTESPAGSLPSGEPSAAEGTFAVSWPSQTAEPGPAQPAEASEVAGGTQPAAGAQEPGETA 481

Query: 1358 XXXXXXXXXXXXXXXTFSATVNGTVKSGSAAGRLDLPPGFMFKVQAQHDYTATDTDELAL 1537
                           TF ATVNGTV+ GS AGRLDLPPGFMFKVQAQHDYTATDTDEL L
Sbjct: 482  ASEAASSSLPAVVVETFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQL 541

Query: 1538 KAGDLVLVIPFQTPE 1582
            KAGD+VLVIPFQ PE
Sbjct: 542  KAGDVVLVIPFQNPE 556


>ref|NP_647598.1| myc box-dependent-interacting protein 1 isoform 6 [Homo sapiens].
          Length = 482

 Score =  655 bits (1689), Expect = 0.0
 Identities = 351/474 (74%), Positives = 360/474 (75%)
 Frame = +2

Query: 161  EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQ 340
            EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQL+EGTRLQ
Sbjct: 3    EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQ 62

Query: 341  KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 520
            KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA
Sbjct: 63   KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 122

Query: 521  LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTXXXXXXXXXXXXXXXXXXXX 700
            LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT                    
Sbjct: 123  LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQ 182

Query: 701  XVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQ 880
             VFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV LEKQ
Sbjct: 183  KVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVGLEKQ 242

Query: 881  HGSNTFTVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXXXXKSP 1060
            HGSNTFTVKAQPSDNAPAKGNK          AATPEIRVNH               KSP
Sbjct: 243  HGSNTFTVKAQPSDNAPAKGNK-SPSPPDGSPAATPEIRVNHEPEPAGGATPGATLPKSP 301

Query: 1061 SQLRKGXXXXXXXKHTPSKEVKQEQILSLFDDTFVPEISVTTPSQPTESPAGSLPSGEPS 1240
            SQLRKG       KHTPSKEVKQEQILSLF+DTFVPEISVTTPSQP E+           
Sbjct: 302  SQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQPAEA---------SE 352

Query: 1241 AAEGTFAVAWPSQTAEPGPAQPAEASXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFSATV 1420
             A GT   A   +  E   ++ A +S                            TF ATV
Sbjct: 353  VAGGTQPAAGAQEPGETAASEAASSS---------------------LPAVVVETFPATV 391

Query: 1421 NGTVKSGSAAGRLDLPPGFMFKVQAQHDYTATDTDELALKAGDLVLVIPFQTPE 1582
            NGTV+ GS AGRLDLPPGFMFKVQAQHDYTATDTDEL LKAGD+VLVIPFQ PE
Sbjct: 392  NGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPE 445


>ref|NP_647596.1| myc box-dependent-interacting protein 1 isoform 4 [Homo sapiens].
          Length = 497

 Score =  645 bits (1663), Expect = 0.0
 Identities = 351/489 (71%), Positives = 360/489 (73%), Gaps = 15/489 (3%)
 Frame = +2

Query: 161  EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQ 340
            EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQL+EGTRLQ
Sbjct: 3    EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQ 62

Query: 341  KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 520
            KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA
Sbjct: 63   KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 122

Query: 521  LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTXXXXXXXXXXXXXXXXXXXX 700
            LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT                    
Sbjct: 123  LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQ 182

Query: 701  XVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQ 880
             VFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV LEKQ
Sbjct: 183  KVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVGLEKQ 242

Query: 881  HGSNTFTVKAQP---------------SDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXX 1015
            HGSNTFTVKAQP               SDNAPAKGNK          AATPEIRVNH   
Sbjct: 243  HGSNTFTVKAQPRKKSKLFSRLRRKKNSDNAPAKGNK-SPSPPDGSPAATPEIRVNHEPE 301

Query: 1016 XXXXXXXXXXXXKSPSQLRKGXXXXXXXKHTPSKEVKQEQILSLFDDTFVPEISVTTPSQ 1195
                        KSPSQLRKG       KHTPSKEVKQEQILSLF+DTFVPEISVTTPSQ
Sbjct: 302  PAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQ 361

Query: 1196 PTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEASXXXXXXXXXXXXXXXXXXX 1375
            P E+            A GT   A   +  E   ++ A +S                   
Sbjct: 362  PAEA---------SEVAGGTQPAAGAQEPGETAASEAASSS------------------- 393

Query: 1376 XXXXXXXXXTFSATVNGTVKSGSAAGRLDLPPGFMFKVQAQHDYTATDTDELALKAGDLV 1555
                     TF ATVNGTV+ GS AGRLDLPPGFMFKVQAQHDYTATDTDEL LKAGD+V
Sbjct: 394  --LPAVVVETFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVV 451

Query: 1556 LVIPFQTPE 1582
            LVIPFQ PE
Sbjct: 452  LVIPFQNPE 460


>ref|NP_647599.1| myc box-dependent-interacting protein 1 isoform 7 [Homo sapiens].
          Length = 475

 Score =  641 bits (1653), Expect = 0.0
 Identities = 347/480 (72%), Positives = 351/480 (73%), Gaps = 6/480 (1%)
 Frame = +2

Query: 161  EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQ 340
            EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQL+EGTRLQ
Sbjct: 3    EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQ 62

Query: 341  KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 520
            KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA
Sbjct: 63   KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 122

Query: 521  LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTXXXXXXXXXXXXXXXXXXXX 700
            LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT                    
Sbjct: 123  LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQ 182

Query: 701  XVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQ 880
             VFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV LEKQ
Sbjct: 183  KVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVGLEKQ 242

Query: 881  HGSNTFTVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXXXXKSP 1060
            HGSNTFTVKAQPSDNAPAKGNK          AATPEIRVNH               KSP
Sbjct: 243  HGSNTFTVKAQPSDNAPAKGNK-SPSPPDGSPAATPEIRVNHEPEPAGGATPGATLPKSP 301

Query: 1061 SQLRKGXXXXXXXKHTPSKEVKQEQILSLFDDTFVPEISVTTPSQPTESPAGSLPSGEPS 1240
                                                       SQPTESPAGSLPSGEPS
Sbjct: 302  -------------------------------------------SQPTESPAGSLPSGEPS 318

Query: 1241 AAEGTFAVAWPSQTAEPGPAQPAEAS------XXXXXXXXXXXXXXXXXXXXXXXXXXXX 1402
            AAEGTFAV+WPSQTAEPGPAQPAEAS                                  
Sbjct: 319  AAEGTFAVSWPSQTAEPGPAQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVE 378

Query: 1403 TFSATVNGTVKSGSAAGRLDLPPGFMFKVQAQHDYTATDTDELALKAGDLVLVIPFQTPE 1582
            TF ATVNGTV+ GS AGRLDLPPGFMFKVQAQHDYTATDTDEL LKAGD+VLVIPFQ PE
Sbjct: 379  TFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPE 438


>ref|NP_647594.1| myc box-dependent-interacting protein 1 isoform 2 [Homo sapiens].
          Length = 550

 Score =  639 bits (1648), Expect = 0.0
 Identities = 356/523 (68%), Positives = 364/523 (69%), Gaps = 49/523 (9%)
 Frame = +2

Query: 161  EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQ 340
            EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQL+EGTRLQ
Sbjct: 3    EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQ 62

Query: 341  KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 520
            KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA
Sbjct: 63   KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 122

Query: 521  LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTXXXXXXXXXXXXXXXXXXXX 700
            LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT                    
Sbjct: 123  LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKPVSLLEKAA 182

Query: 701  X-------------------------------VFEEMNVDLQEELPSLWNSRVGFYVNTF 787
                                            VFEEMNVDLQEELPSLWNSRVGFYVNTF
Sbjct: 183  PQWCQGKLQAHLVAQTNLLRNQAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTF 242

Query: 788  QSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKGNKXXXXXXX 967
            QSIAGLEENFHKEMSKLNQNLNDVLV LEKQHGSNTFTVKAQPSDNAPAKGNK       
Sbjct: 243  QSIAGLEENFHKEMSKLNQNLNDVLVGLEKQHGSNTFTVKAQPSDNAPAKGNKSPSPPDG 302

Query: 968  XXXAATPEIRVNHXXXXXXXXXXXXXXXKSPSQLRKGXXXXXXXKHTPSKEVKQEQILSL 1147
               AATPEIRVNH               KSPSQ              P    +Q  +L L
Sbjct: 303  SP-AATPEIRVNHEPEPAGGATPGATLPKSPSQFE-----------APGPFSEQASLLDL 350

Query: 1148 FDDTFVP---EISVTTPS---------QPTESPAGSLPSGEPSAAEGTFAVAWPSQTAEP 1291
              D   P    +   TPS         +PTESPAGSLPSGEPSAAEGTFAV+WPSQTAEP
Sbjct: 351  DFDPLPPVTSPVKAPTPSGQSIPWDLWEPTESPAGSLPSGEPSAAEGTFAVSWPSQTAEP 410

Query: 1292 GPAQPAEASXXXXXXXXXXXXXXXXXXXXXXXXXXXX------TFSATVNGTVKSGSAAG 1453
            GPAQPAEAS                                  TF ATVNGTV+ GS AG
Sbjct: 411  GPAQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVNGTVEGGSGAG 470

Query: 1454 RLDLPPGFMFKVQAQHDYTATDTDELALKAGDLVLVIPFQTPE 1582
            RLDLPPGFMFKVQAQHDYTATDTDEL LKAGD+VLVIPFQ PE
Sbjct: 471  RLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPE 513


>ref|NP_647595.1| myc box-dependent-interacting protein 1 isoform 3 [Homo sapiens].
          Length = 506

 Score =  625 bits (1611), Expect = e-179
 Identities = 347/511 (67%), Positives = 351/511 (68%), Gaps = 37/511 (7%)
 Frame = +2

Query: 161  EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQ 340
            EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQL+EGTRLQ
Sbjct: 3    EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQ 62

Query: 341  KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 520
            KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA
Sbjct: 63   KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 122

Query: 521  LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT-------------------- 640
            LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT                    
Sbjct: 123  LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKPVSLLEKAA 182

Query: 641  -----------XXXXXXXXXXXXXXXXXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTF 787
                                            VFEEMNVDLQEELPSLWNSRVGFYVNTF
Sbjct: 183  PQWCQGKLQAHLVAQTNLLRNQAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTF 242

Query: 788  QSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKGNKXXXXXXX 967
            QSIAGLEENFHKEMSKLNQNLNDVLV LEKQHGSNTFTVKAQPSDNAPAKGNK       
Sbjct: 243  QSIAGLEENFHKEMSKLNQNLNDVLVGLEKQHGSNTFTVKAQPSDNAPAKGNK-SPSPPD 301

Query: 968  XXXAATPEIRVNHXXXXXXXXXXXXXXXKSPSQLRKGXXXXXXXKHTPSKEVKQEQILSL 1147
               AATPEIRVNH               KSP                             
Sbjct: 302  GSPAATPEIRVNHEPEPAGGATPGATLPKSP----------------------------- 332

Query: 1148 FDDTFVPEISVTTPSQPTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEAS--- 1318
                          SQPTESPAGSLPSGEPSAAEGTFAV+WPSQTAEPGPAQPAEAS   
Sbjct: 333  --------------SQPTESPAGSLPSGEPSAAEGTFAVSWPSQTAEPGPAQPAEASEVA 378

Query: 1319 ---XXXXXXXXXXXXXXXXXXXXXXXXXXXXTFSATVNGTVKSGSAAGRLDLPPGFMFKV 1489
                                           TF ATVNGTV+ GS AGRLDLPPGFMFKV
Sbjct: 379  GGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVNGTVEGGSGAGRLDLPPGFMFKV 438

Query: 1490 QAQHDYTATDTDELALKAGDLVLVIPFQTPE 1582
            QAQHDYTATDTDEL LKAGD+VLVIPFQ PE
Sbjct: 439  QAQHDYTATDTDELQLKAGDVVLVIPFQNPE 469


>ref|NP_647600.1| myc box-dependent-interacting protein 1 isoform 9 [Homo sapiens].
          Length = 439

 Score =  567 bits (1462), Expect = e-162
 Identities = 315/474 (66%), Positives = 327/474 (68%)
 Frame = +2

Query: 161  EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQ 340
            EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQL+EGTRLQ
Sbjct: 3    EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQ 62

Query: 341  KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 520
            KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA
Sbjct: 63   KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 122

Query: 521  LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTXXXXXXXXXXXXXXXXXXXX 700
            LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT                    
Sbjct: 123  LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQ 182

Query: 701  XVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQ 880
             VFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV LEKQ
Sbjct: 183  KVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVGLEKQ 242

Query: 881  HGSNTFTVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXXXXKSP 1060
            HGSNTFTVKAQPSDNAPAKGNK          AATPEIRVNH               KSP
Sbjct: 243  HGSNTFTVKAQPSDNAPAKGNK-SPSPPDGSPAATPEIRVNHEPEPAGGATPGATLPKSP 301

Query: 1061 SQLRKGXXXXXXXKHTPSKEVKQEQILSLFDDTFVPEISVTTPSQPTESPAGSLPSGEPS 1240
            SQ                                      +  +  T+  AG+   GE +
Sbjct: 302  SQ----------------------------------PAEASEVAGGTQPAAGAQEPGETA 327

Query: 1241 AAEGTFAVAWPSQTAEPGPAQPAEASXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFSATV 1420
            A+E   + + P+   E  PA                                      TV
Sbjct: 328  ASEAA-SSSLPAVVVETFPA--------------------------------------TV 348

Query: 1421 NGTVKSGSAAGRLDLPPGFMFKVQAQHDYTATDTDELALKAGDLVLVIPFQTPE 1582
            NGTV+ GS AGRLDLPPGFMFKVQAQHDYTATDTDEL LKAGD+VLVIPFQ PE
Sbjct: 349  NGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPE 402


>ref|NP_004296.1| myc box-dependent-interacting protein 1 isoform 8 [Homo sapiens].
          Length = 454

 Score =  557 bits (1436), Expect = e-159
 Identities = 315/489 (64%), Positives = 327/489 (66%), Gaps = 15/489 (3%)
 Frame = +2

Query: 161  EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQ 340
            EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQL+EGTRLQ
Sbjct: 3    EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQ 62

Query: 341  KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 520
            KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA
Sbjct: 63   KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 122

Query: 521  LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTXXXXXXXXXXXXXXXXXXXX 700
            LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT                    
Sbjct: 123  LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQ 182

Query: 701  XVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQ 880
             VFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV LEKQ
Sbjct: 183  KVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVGLEKQ 242

Query: 881  HGSNTFTVKAQP---------------SDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXX 1015
            HGSNTFTVKAQP               SDNAPAKGNK          AATPEIRVNH   
Sbjct: 243  HGSNTFTVKAQPRKKSKLFSRLRRKKNSDNAPAKGNK-SPSPPDGSPAATPEIRVNHEPE 301

Query: 1016 XXXXXXXXXXXXKSPSQLRKGXXXXXXXKHTPSKEVKQEQILSLFDDTFVPEISVTTPSQ 1195
                        KSPSQ                                      +  + 
Sbjct: 302  PAGGATPGATLPKSPSQ----------------------------------PAEASEVAG 327

Query: 1196 PTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEASXXXXXXXXXXXXXXXXXXX 1375
             T+  AG+   GE +A+E   + + P+   E  PA                         
Sbjct: 328  GTQPAAGAQEPGETAASEAA-SSSLPAVVVETFPA------------------------- 361

Query: 1376 XXXXXXXXXTFSATVNGTVKSGSAAGRLDLPPGFMFKVQAQHDYTATDTDELALKAGDLV 1555
                         TVNGTV+ GS AGRLDLPPGFMFKVQAQHDYTATDTDEL LKAGD+V
Sbjct: 362  -------------TVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVV 408

Query: 1556 LVIPFQTPE 1582
            LVIPFQ PE
Sbjct: 409  LVIPFQNPE 417


>ref|NP_647601.1| myc box-dependent-interacting protein 1 isoform 10 [Homo sapiens].
          Length = 409

 Score =  491 bits (1264), Expect = e-139
 Identities = 254/302 (84%), Positives = 255/302 (84%)
 Frame = +2

Query: 161  EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQ 340
            EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQL+EGTRLQ
Sbjct: 3    EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQ 62

Query: 341  KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 520
            KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA
Sbjct: 63   KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 122

Query: 521  LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTXXXXXXXXXXXXXXXXXXXX 700
            LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT                    
Sbjct: 123  LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQ 182

Query: 701  XVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQ 880
             VFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV LEKQ
Sbjct: 183  KVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVGLEKQ 242

Query: 881  HGSNTFTVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXXXXKSP 1060
            HGSNTFTVKAQPSDNAPAKGNK          AATPEIRVNH               KSP
Sbjct: 243  HGSNTFTVKAQPSDNAPAKGNK-SPSPPDGSPAATPEIRVNHEPEPAGGATPGATLPKSP 301

Query: 1061 SQ 1066
            SQ
Sbjct: 302  SQ 303



 Score =  110 bits (276), Expect = 3e-24
 Identities = 53/60 (88%), Positives = 55/60 (91%)
 Frame = +2

Query: 1403 TFSATVNGTVKSGSAAGRLDLPPGFMFKVQAQHDYTATDTDELALKAGDLVLVIPFQTPE 1582
            TF ATVNGTV+ GS AGRLDLPPGFMFKVQAQHDYTATDTDEL LKAGD+VLVIPFQ PE
Sbjct: 313  TFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPE 372


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 57,284,189
Number of extensions: 1646269
Number of successful extensions: 9535
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 9454
Number of HSP's successfully gapped: 28
Length of query: 527
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 420
Effective length of database: 14,770,016
Effective search space: 6203406720
Effective search space used: 6203406720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007968
         (1582 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr15                                                         468   e-129

>Sscrofa_Chr15 
||          Length = 157681621

 Score =  468 bits (236), Expect = e-129
 Identities = 239/240 (99%)
 Strand = Plus / Plus

                                                                            
Query: 1        ctccctcggtccccgcgtcgctcgctcgctcgccgggcggacgctccgcctccgccagtc 60
                |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29008956 ctcccttggtccccgcgtcgctcgctcgctcgccgggcggacgctccgcctccgccagtc 29009015

                                                                            
Query: 61       ggctcggcgctctgctgcgcggcgtggagcagagccggggcccggggctgggggctggga 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29009016 ggctcggcgctctgctgcgcggcgtggagcagagccggggcccggggctgggggctggga 29009075

                                                                            
Query: 121      ggtcgccgcccgccacgggcaagcttgagccgcaatggctgagatgggtagcaagggggt 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29009076 ggtcgccgcccgccacgggcaagcttgagccgcaatggctgagatgggtagcaagggggt 29009135

                                                                            
Query: 181      gaccgcggggaagatcgccagcaatgtgcagaagaagctcactcgcgcgcaggagaaggt 240
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29009136 gaccgcggggaagatcgccagcaatgtgcagaagaagctcactcgcgcgcaggagaaggt 29009195



 Score =  299 bits (151), Expect = 2e-78
 Identities = 151/151 (100%)
 Strand = Plus / Plus

                                                                            
Query: 916      cagtgacaacgcccctgcaaaagggaacaagagcccctcgcctccgcctgatggctctcc 975
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29050203 cagtgacaacgcccctgcaaaagggaacaagagcccctcgcctccgcctgatggctctcc 29050262

                                                                            
Query: 976      tgctgccactcccgagatcagagtcaaccacgagcctgagccagccggggcagccacacc 1035
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29050263 tgctgccactcccgagatcagagtcaaccacgagcctgagccagccggggcagccacacc 29050322

                                               
Query: 1036     tggggcagccctccccaagtccccgtcccag 1066
                |||||||||||||||||||||||||||||||
Sbjct: 29050323 tggggcagccctccccaagtccccgtcccag 29050353



 Score =  262 bits (132), Expect = 5e-67
 Identities = 132/132 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1064     cagctccggaaaggcccaccagtccctccgcctcccaaacacaccccgtccaaggaggtc 1123
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29051491 cagctccggaaaggcccaccagtccctccgcctcccaaacacaccccgtccaaggaggtc 29051550

                                                                            
Query: 1124     aagcaggagcagatcctcagcctgtttgacgacacgtttgtccctgagatcagcgtgacc 1183
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29051551 aagcaggagcagatcctcagcctgtttgacgacacgtttgtccctgagatcagcgtgacc 29051610

                            
Query: 1184     accccctcccag 1195
                ||||||||||||
Sbjct: 29051611 accccctcccag 29051622



 Score =  218 bits (110), Expect = 7e-54
 Identities = 110/110 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1194     agcccacagagagtccagctggcagcctgccttccggggagcccagcgctgccgagggca 1253
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29055643 agcccacagagagtccagctggcagcctgccttccggggagcccagcgctgccgagggca 29055702

                                                                  
Query: 1254     cctttgctgtggcctggcccagccagacggccgagccagggcctgcccaa 1303
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29055703 cctttgctgtggcctggcccagccagacggccgagccagggcctgcccaa 29055752



 Score =  218 bits (110), Expect = 7e-54
 Identities = 113/114 (99%)
 Strand = Plus / Plus

                                                                            
Query: 1376     agttctctcccggcggtggtggtggagaccttctcagcaactgtgaacggcaccgtgaag 1435
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 29056770 agttctctcccggcggtggtggtggagaccttctcagcaactgtgaacggcaccgtggag 29056829

                                                                      
Query: 1436     agcggcagcgcggcagggcgcctggacctgcctccagggttcatgttcaaggtg 1489
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29056830 agcggcagcgcggcagggcgcctggacctgcctccagggttcatgttcaaggtg 29056883



 Score =  212 bits (107), Expect = 4e-52
 Identities = 110/111 (99%)
 Strand = Plus / Plus

                                                                            
Query: 564      agtcacgcattgccaagcgtgggcggaagctggtggactatgacagtgcccggcaccatt 623
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29040680 agtcacgcattgccaagcgtgggcggaagctggtggactatgacagtgcccggcaccatt 29040739

                                                                   
Query: 624      atgagtccctccaaactgccaaaaagaaggatgaagccaaaatagctaagg 674
                 ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29040740 ttgagtccctccaaactgccaaaaagaaggatgaagccaaaatagctaagg 29040790



 Score =  192 bits (97), Expect = 4e-46
 Identities = 97/97 (100%)
 Strand = Plus / Plus

                                                                            
Query: 373      agccatgcatgaggcctccaagaagctgaatgagtgtctgcaggaggtgtacgagcctga 432
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29039098 agccatgcatgaggcctccaagaagctgaatgagtgtctgcaggaggtgtacgagcctga 29039157

                                                     
Query: 433      ctggccgggcagggacgaagccaacaagatcgcagag 469
                |||||||||||||||||||||||||||||||||||||
Sbjct: 29039158 ctggccgggcagggacgaagccaacaagatcgcagag 29039194



 Score =  186 bits (94), Expect = 3e-44
 Identities = 97/98 (98%)
 Strand = Plus / Plus

                                                                            
Query: 468      agaacaatgacctgctctggatggattaccaccagaagctggtggaccaggcgctgctga 527
                |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 29039638 agaacaatgacctgctctggatggattaccaccaaaagctggtggaccaggcgctgctga 29039697

                                                      
Query: 528      ccatggacacgtacctgggccagttcccggacatcaag 565
                ||||||||||||||||||||||||||||||||||||||
Sbjct: 29039698 ccatggacacgtacctgggccagttcccggacatcaag 29039735



 Score =  174 bits (88), Expect = 1e-40
 Identities = 88/88 (100%)
 Strand = Plus / Plus

                                                                            
Query: 672      aggccgaggaagagctcatcaaagcccagaaggtgtttgaggagatgaacgtggacctgc 731
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29045538 aggccgaggaagagctcatcaaagcccagaaggtgtttgaggagatgaacgtggacctgc 29045597

                                            
Query: 732      aggaggagctgccgtccctgtggaacag 759
                ||||||||||||||||||||||||||||
Sbjct: 29045598 aggaggagctgccgtccctgtggaacag 29045625



 Score =  168 bits (85), Expect = 6e-39
 Identities = 85/85 (100%)
 Strand = Plus / Plus

                                                                            
Query: 834      agctcaaccagaatctcaatgacgtgctggtcagcctggagaagcagcacgggagcaaca 893
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29047353 agctcaaccagaatctcaatgacgtgctggtcagcctggagaagcagcacgggagcaaca 29047412

                                         
Query: 894      ccttcacggtcaaggcccagcccag 918
                |||||||||||||||||||||||||
Sbjct: 29047413 ccttcacggtcaaggcccagcccag 29047437



 Score =  165 bits (83), Expect = 9e-38
 Identities = 83/83 (100%)
 Strand = Plus / Plus

                                                                            
Query: 237      aggtcctccagaaactggggaaggcagatgagaccaaggatgaacagtttgaacagtgtg 296
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29033345 aggtcctccagaaactggggaaggcagatgagaccaaggatgaacagtttgaacagtgtg 29033404

                                       
Query: 297      tccagaatttcaacaagcagctg 319
                |||||||||||||||||||||||
Sbjct: 29033405 tccagaatttcaacaagcagctg 29033427



 Score =  159 bits (80), Expect = 6e-36
 Identities = 80/80 (100%)
 Strand = Plus / Plus

                                                                            
Query: 756      acagccgggtgggtttctatgtcaacactttccagagcatcgcgggcttggaggagaact 815
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29045770 acagccgggtgggtttctatgtcaacactttccagagcatcgcgggcttggaggagaact 29045829

                                    
Query: 816      tccacaaggaaatgagtaag 835
                ||||||||||||||||||||
Sbjct: 29045830 tccacaaggaaatgagtaag 29045849



 Score =  143 bits (72), Expect = 3e-31
 Identities = 72/72 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1304     ccagcagaggcgtcggaggtggcgggtggagcccaggagcctggggagccggcagcaagt 1363
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29056486 ccagcagaggcgtcggaggtggcgggtggagcccaggagcctggggagccggcagcaagt 29056545

                            
Query: 1364     gaagcagcctcc 1375
                ||||||||||||
Sbjct: 29056546 gaagcagcctcc 29056557



 Score =  133 bits (67), Expect = 3e-28
 Identities = 79/83 (95%)
 Strand = Plus / Plus

                                                                            
Query: 1485     aggtgcaggcccagcacgactacacggccactgacacagacgagctggcactcaaagctg 1544
                |||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||
Sbjct: 29057103 aggtgcaggcccagcacgactacacggccactgacacagacgagctgcaactcaaggctg 29057162

                                       
Query: 1545     gagacctggtgctggtgatcccc 1567
                ||||| |||||||||||||||||
Sbjct: 29057163 gagacgtggtgctggtgatcccc 29057185



 Score =  111 bits (56), Expect = 1e-21
 Identities = 56/56 (100%)
 Strand = Plus / Plus

                                                                        
Query: 319      gagtgagggcacccggctgcagaaggatctccgaacctacctggcctcagtcaaag 374
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29038864 gagtgagggcacccggctgcagaaggatctccgaacctacctggcctcagtcaaag 29038919


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,006,373
Number of extensions: 339
Number of successful extensions: 339
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 339
Number of HSP's successfully gapped: 15
Length of query: 1582
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1560
Effective length of database: 2,808,408,574
Effective search space: 4381117375440
Effective search space used: 4381117375440
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)