Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007968
(1582 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001040006.1| bridging integrator 1 [Bos taurus]. 494 e-139
Alignment gi|NP_001091599.1| amphiphysin [Bos taurus]. 357 2e-98
Alignment gi|NP_001076904.1| bridging integrator 2 [Bos taurus]. 269 5e-72
Alignment gi|XP_602799.4| PREDICTED: bridging integrator 2-like [Bos taur... 157 2e-38
Alignment gi|XP_002704167.1| PREDICTED: amphiphysin-like [Bos taurus]. 71 3e-12
Alignment gi|XP_002704169.1| PREDICTED: amphiphysin-like [Bos taurus]. 50 4e-06
>ref|NP_001040006.1| bridging integrator 1 [Bos taurus].
Length = 433
Score = 494 bits (1271), Expect = e-139
Identities = 258/346 (74%), Positives = 270/346 (78%), Gaps = 2/346 (0%)
Frame = +2
Query: 161 EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQ 340
EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQL+EGTRLQ
Sbjct: 3 EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQ 62
Query: 341 KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 520
KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEA+KIAENNDLLWMDYHQKLVDQA
Sbjct: 63 KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEASKIAENNDLLWMDYHQKLVDQA 122
Query: 521 LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTXXXXXXXXXXXXXXXXXXXX 700
LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT
Sbjct: 123 LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQ 182
Query: 701 XVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQ 880
VFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVL+SLEKQ
Sbjct: 183 KVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLISLEKQ 242
Query: 881 HGSNTFTVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXXXXKSP 1060
HGSNTFTVKAQPSDN PAKGNK AATPEIRVNH KSP
Sbjct: 243 HGSNTFTVKAQPSDNVPAKGNKSPSPPPDGSPAATPEIRVNHEPEPAGAATPGATLPKSP 302
Query: 1061 SQLRKGXXXXXXXK--HTPSKEVKQEQILSLFDDTFVPEISVTTPS 1192
SQ + + T + E + ++ +TF ++ T S
Sbjct: 303 SQPAEASEAAGAQEPGETTTSEAASSSLPAVVVETFSATVNGTVES 348
Score = 122 bits (306), Expect = 9e-28
Identities = 71/140 (50%), Positives = 78/140 (55%)
Frame = +2
Query: 1163 VPEISVTTPSQPTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEASXXXXXXXX 1342
VP +PS P + + P + A P T P+QPAEAS
Sbjct: 258 VPAKGNKSPSPPPDGSPAATPEIRVNHEPEPAGAATPGATLPKSPSQPAEASEAAGAQEP 317
Query: 1343 XXXXXXXXXXXXXXXXXXXXTFSATVNGTVKSGSAAGRLDLPPGFMFKVQAQHDYTATDT 1522
TFSATVNGTV+SGS AGRLDLPPGFMFKVQAQHDYTATDT
Sbjct: 318 GETTTSEAASSSLPAVVVE-TFSATVNGTVESGSGAGRLDLPPGFMFKVQAQHDYTATDT 376
Query: 1523 DELALKAGDLVLVIPFQTPE 1582
DEL LKAGD+VLVIPFQ PE
Sbjct: 377 DELQLKAGDVVLVIPFQNPE 396
>ref|NP_001091599.1| amphiphysin [Bos taurus].
Length = 684
Score = 357 bits (916), Expect = 2e-98
Identities = 185/339 (54%), Positives = 224/339 (66%)
Frame = +2
Query: 179 VTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQKDLRTY 358
+ G A NVQK+L RAQEKVLQKLGKADETKDEQFE+ VQNF +Q +EGTRLQ++LR Y
Sbjct: 4 IKTGIFAKNVQKRLNRAQEKVLQKLGKADETKDEQFEEYVQNFKRQEAEGTRLQRELRGY 63
Query: 359 LASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQALLTMDT 538
LA++K M EAS KL E L EVYEPDW GR++ + E D+LW D+HQKLVD +LLT+DT
Sbjct: 64 LAAIKGMQEASMKLTESLHEVYEPDWYGREDVKMVGEKCDVLWEDFHQKLVDGSLLTLDT 123
Query: 539 YLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTXXXXXXXXXXXXXXXXXXXXXVFEEM 718
YLGQFPDIK+RIAKR RKLVDYDSARHH E+LQ+ VFEE
Sbjct: 124 YLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQSSKRKDESRISKAEEEFQKAQKVFEEF 183
Query: 719 NVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTF 898
NVDLQEELPSLW+ RVGFYVNTF++++ LE FHKE++ L L +V+ L QH F
Sbjct: 184 NVDLQEELPSLWSRRVGFYVNTFKNVSSLEAKFHKEIAVLCHKLYEVMTKLGDQHADKAF 243
Query: 899 TVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXXXXKSPSQLRKG 1078
T++ PSD+ P + K +P NH +SPSQ RKG
Sbjct: 244 TIQGAPSDSGPLRIAKTPSPPEEASPIPSPTASPNH---TLAPASPAPVRPRSPSQTRKG 300
Query: 1079 XXXXXXXKHTPSKEVKQEQILSLFDDTFVPEISVTTPSQ 1195
K TP+KE++QE I+S F+D FVPEISVTTPSQ
Sbjct: 301 PPVPPLPKVTPTKELQQENIISFFEDNFVPEISVTTPSQ 339
Score = 50.4 bits (119), Expect = 4e-06
Identities = 19/36 (52%), Positives = 30/36 (83%)
Frame = +2
Query: 1460 DLPPGFMFKVQAQHDYTATDTDELALKAGDLVLVIP 1567
++PPGF++KV+ HD+ A ++DEL L+ GD+VLV+P
Sbjct: 607 EVPPGFLYKVETLHDFEAANSDELTLQRGDVVLVVP 642
>ref|NP_001076904.1| bridging integrator 2 [Bos taurus].
Length = 519
Score = 269 bits (688), Expect = 5e-72
Identities = 135/253 (53%), Positives = 169/253 (66%)
Frame = +2
Query: 167 GSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQKD 346
G G AG A VQKK +RAQEKVLQKLGK ETKDE+FEQ NF++Q +EG +L KD
Sbjct: 4 GRAGGAAGLFAKQVQKKFSRAQEKVLQKLGKTVETKDERFEQSASNFHQQQAEGHKLYKD 63
Query: 347 LRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQALL 526
L+ +L++VK MHE+SK+++E LQE+Y W G +E I NNDLLW DY +KL DQ L
Sbjct: 64 LKNFLSAVKVMHESSKRVSETLQEIYSSKWDGHEELKAIVANNDLLWEDYEEKLADQVLR 123
Query: 527 TMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTXXXXXXXXXXXXXXXXXXXXXV 706
TM+ Y+ QF +IK RIAKRGRKLVDYDSARHH E++Q V
Sbjct: 124 TMENYVAQFSEIKERIAKRGRKLVDYDSARHHLEAVQNAKKKDEAKTAKAEEEFNKAQLV 183
Query: 707 FEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHG 886
FE++N +L EELP L+NSR+G YV FQ+I+ L + F++EMSKLN NL +V+ LEKQH
Sbjct: 184 FEDLNQELLEELPVLYNSRIGCYVTIFQNISNLRDVFYREMSKLNHNLYEVMSKLEKQHS 243
Query: 887 SNTFTVKAQPSDN 925
F VK S N
Sbjct: 244 DKVFVVKGLSSSN 256
>ref|XP_602799.4| PREDICTED: bridging integrator 2-like [Bos taurus].
Length = 407
Score = 157 bits (397), Expect = 2e-38
Identities = 75/133 (56%), Positives = 95/133 (71%)
Frame = +2
Query: 167 GSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQKD 346
G G AG A VQKK +RAQEKVLQKLGK ETKDE+FEQ NF++Q +EG +L KD
Sbjct: 4 GRAGGAAGLFAKQVQKKFSRAQEKVLQKLGKTVETKDERFEQSASNFHQQQAEGHKLYKD 63
Query: 347 LRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQALL 526
L+ +L++VK MHE+SK+++E LQE+Y W G +E I NNDLLW DY +KL DQ L
Sbjct: 64 LKNFLSAVKVMHESSKRVSETLQEIYSSKWDGHEELKAIVANNDLLWEDYEEKLADQVLR 123
Query: 527 TMDTYLGQFPDIK 565
TM+ Y+ QF +IK
Sbjct: 124 TMENYVAQFSEIK 136
>ref|XP_002704167.1| PREDICTED: amphiphysin-like [Bos taurus].
Length = 333
Score = 70.9 bits (172), Expect = 3e-12
Identities = 34/46 (73%), Positives = 38/46 (82%)
Frame = +2
Query: 179 VTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQ 316
+ G A NVQK+L RAQEKVLQKLGKADETKDEQFE+ VQNF +Q
Sbjct: 136 IKTGIFAKNVQKRLNRAQEKVLQKLGKADETKDEQFEEYVQNFKRQ 181
Score = 69.7 bits (169), Expect = 7e-12
Identities = 36/71 (50%), Positives = 47/71 (66%)
Frame = +2
Query: 257 KADETKDEQFEQCVQNFNKQLSEGTRLQKDLRTYLASVKAMHEASKKLNECLQEVYEPDW 436
KAD K E ++C+ +EGTRLQ++LR YLA++K M EAS KL E L EVYEPDW
Sbjct: 236 KADLGKHEA-QECIH------AEGTRLQRELRGYLAAIKGMQEASMKLTESLHEVYEPDW 288
Query: 437 PGRDEANKIAE 469
GR++ + E
Sbjct: 289 YGREDVKMVGE 299
>ref|XP_002704169.1| PREDICTED: amphiphysin-like [Bos taurus].
Length = 367
Score = 50.4 bits (119), Expect = 4e-06
Identities = 19/36 (52%), Positives = 30/36 (83%)
Frame = +2
Query: 1460 DLPPGFMFKVQAQHDYTATDTDELALKAGDLVLVIP 1567
++PPGF++KV+ HD+ A ++DEL L+ GD+VLV+P
Sbjct: 290 EVPPGFLYKVETLHDFEAANSDELTLQRGDVVLVVP 325
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 56,215,665
Number of extensions: 1649013
Number of successful extensions: 10111
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 10020
Number of HSP's successfully gapped: 10
Length of query: 527
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 420
Effective length of database: 14,140,958
Effective search space: 5939202360
Effective search space used: 5939202360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007968
(1582 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540990.2| PREDICTED: similar to Myc box dependent interac... 662 0.0
Alignment gi|XP_533085.2| PREDICTED: similar to Amphiphysin [Canis famili... 327 2e-89
Alignment gi|XP_543665.2| PREDICTED: similar to bridging integrator 2 [Ca... 266 5e-71
>ref|XP_540990.2| PREDICTED: similar to Myc box dependent interacting protein 1
(Bridging integrator 1) (Amphiphysin-like protein)
(Amphiphysin II) (Box-dependent myc-interacting
protein-1) [Canis familiaris].
Length = 695
Score = 662 bits (1708), Expect = 0.0
Identities = 368/553 (66%), Positives = 374/553 (67%), Gaps = 81/553 (14%)
Frame = +2
Query: 167 GSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQKD 346
G +G G+ QKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQL+EGTRLQKD
Sbjct: 108 GQQGGDGGEDRQQRQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQKD 167
Query: 347 LRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQALL 526
LRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLW+DYHQKLVDQALL
Sbjct: 168 LRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWLDYHQKLVDQALL 227
Query: 527 TMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT---------------------- 640
TMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT
Sbjct: 228 TMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKPVSLLEKAAPQ 287
Query: 641 ---------XXXXXXXXXXXXXXXXXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTFQS 793
VFEEMNVDLQEELPSLWNSRVGFYVNTFQS
Sbjct: 288 WCQGKLQAHLVAQTNLLRNQAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQS 347
Query: 794 IAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKGNKXXXXXXXXX 973
IAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKGNK
Sbjct: 348 IAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKGNKSPSPPPDGS 407
Query: 974 XAATPEIRVNHXXXXXXXXXXXXXXXKSPSQLRKGXXXXXXXKHTPSKEVKQEQILSLFD 1153
AATPEIRVNH KSPSQLRKG KHTPSKEVKQEQILSLFD
Sbjct: 408 PAATPEIRVNH--EPEPSAAAGAALPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFD 465
Query: 1154 DTFVPEISVTTPSQ--------------------------------------------PT 1201
DTFVPEISVTTPSQ PT
Sbjct: 466 DTFVPEISVTTPSQFEVPGPFSEQASLLDLDFDPLPPVASPVKAPTPSGQSIPWDLWEPT 525
Query: 1202 ESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEAS------XXXXXXXXXXXXXXX 1363
ESPAGSLP GEPSA EGTFAVAWPSQTAEPGPAQPAEAS
Sbjct: 526 ESPAGSLPPGEPSATEGTFAVAWPSQTAEPGPAQPAEASEVAGGTPPAAGAQEPGETAAS 585
Query: 1364 XXXXXXXXXXXXXTFSATVNGTVKSGSAAGRLDLPPGFMFKVQAQHDYTATDTDELALKA 1543
TFSATVNGTV+ G AGRLDLPPGFMFKVQAQHDY ATDTDEL LKA
Sbjct: 586 EAASSSLPAVVVETFSATVNGTVEGGGGAGRLDLPPGFMFKVQAQHDYVATDTDELQLKA 645
Query: 1544 GDLVLVIPFQTPE 1582
GD+VLVIPFQ PE
Sbjct: 646 GDVVLVIPFQNPE 658
>ref|XP_533085.2| PREDICTED: similar to Amphiphysin [Canis familiaris].
Length = 836
Score = 327 bits (838), Expect = 2e-89
Identities = 172/322 (53%), Positives = 209/322 (64%), Gaps = 3/322 (0%)
Frame = +2
Query: 239 VLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQKDLRTYLASVKAMHEASKKLNECLQE 418
VLQKLGKADETKDEQFE+ VQNF +Q +EGTRLQ++LR YLA++K M EAS KL E L E
Sbjct: 40 VLQKLGKADETKDEQFEEYVQNFKRQEAEGTRLQRELRGYLAAIKGMQEASMKLTESLHE 99
Query: 419 VYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQALLTMDTYLGQFPDIKSRIAKRGRKLV 598
VYEPDW GR++ + E D+LW D+HQKLVD +LLT+DTYLGQFPDIK+RIAKR RKLV
Sbjct: 100 VYEPDWYGREDVKMVGEKCDVLWEDFHQKLVDGSLLTLDTYLGQFPDIKNRIAKRSRKLV 159
Query: 599 DYDSARHHYESLQTXXXXXXXXXXXXXXXXXXXXXVFEEMNVDLQEELPSLWNSRVGFYV 778
DYDSARHH E+LQ+ VFEE NVDLQEELPSLW+ RVGFYV
Sbjct: 160 DYDSARHHLEALQSSKRKDESRISKAEEEFQKAQKVFEEFNVDLQEELPSLWSRRVGFYV 219
Query: 779 NTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQP---SDNAPAKGNKX 949
NTF++++ LE FHKE++ L L +V+ L QH FT++ P D+ P + K
Sbjct: 220 NTFKNVSSLEAKFHKEIAVLCHKLYEVMTKLGDQHADKAFTIQGAPRARCDSGPLRIAKT 279
Query: 950 XXXXXXXXXAATPEIRVNHXXXXXXXXXXXXXXXKSPSQLRKGXXXXXXXKHTPSKEVKQ 1129
+P NH +SPSQ RKG K TP+KE++Q
Sbjct: 280 PSPPEEPSPIPSPTASPNH---TLAPASPAPARPRSPSQTRKGPPVPPLPKVTPTKELQQ 336
Query: 1130 EQILSLFDDTFVPEISVTTPSQ 1195
E I+S F+D FVPEISVTTPSQ
Sbjct: 337 ENIISFFEDNFVPEISVTTPSQ 358
Score = 52.0 bits (123), Expect = 2e-06
Identities = 20/37 (54%), Positives = 31/37 (83%)
Frame = +2
Query: 1457 LDLPPGFMFKVQAQHDYTATDTDELALKAGDLVLVIP 1567
L++PPGF++KV+ HD+ A ++DEL L+ GD+VLV+P
Sbjct: 758 LEVPPGFLYKVETLHDFEAANSDELTLQRGDVVLVVP 794
>ref|XP_543665.2| PREDICTED: similar to bridging integrator 2 [Canis familiaris].
Length = 497
Score = 266 bits (679), Expect = 5e-71
Identities = 134/251 (53%), Positives = 170/251 (67%)
Frame = +2
Query: 167 GSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQKD 346
G G AG A VQKKL+RAQEKVLQKLGK ETKDE+FEQ NF Q +EG +L KD
Sbjct: 53 GRAGGAAGLFAKQVQKKLSRAQEKVLQKLGKTVETKDERFEQSANNFYHQQAEGQKLYKD 112
Query: 347 LRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQALL 526
L+ +L++VK MHE+SK+++E LQE+Y +W G +E I NNDLLW DY +KL DQAL
Sbjct: 113 LKNFLSAVKVMHESSKRVSETLQEIYSSEWDGHEELKAIVGNNDLLWEDYEEKLADQALR 172
Query: 527 TMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTXXXXXXXXXXXXXXXXXXXXXV 706
TM+ Y+ QF +IK RIAKRGRKLVDYDSARHH E++Q V
Sbjct: 173 TMENYVAQFSEIKERIAKRGRKLVDYDSARHHLEAVQNAKKKDEAKTAKAEEEFNKAQSV 232
Query: 707 FEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHG 886
FE++N +L EELP L++SR+G YV FQ+I+ L + F++EMSKLN +L +V+ LEKQH
Sbjct: 233 FEDLNQELLEELPVLYHSRIGCYVTIFQNISNLRDVFYREMSKLNHSLYEVMSKLEKQHS 292
Query: 887 SNTFTVKAQPS 919
+ F VK S
Sbjct: 293 NKVFVVKGVSS 303
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 58,592,980
Number of extensions: 1699772
Number of successful extensions: 10146
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 10080
Number of HSP's successfully gapped: 6
Length of query: 527
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 420
Effective length of database: 15,307,552
Effective search space: 6429171840
Effective search space used: 6429171840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007968
(1582 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003133335.2| PREDICTED: myc box-dependent-interacting pro... 698 0.0
Alignment gi|NP_001090909.1| myc box-dependent-interacting protein 1 [Sus... 587 e-168
Alignment gi|XP_003126186.1| PREDICTED: bridging integrator 2 [Sus scrofa]. 218 7e-57
Alignment gi|XP_003361993.1| PREDICTED: bridging integrator 2-like, parti... 206 3e-53
Alignment gi|XP_003357576.1| PREDICTED: amphiphysin-like [Sus scrofa]. 111 1e-24
Alignment gi|XP_003357575.1| PREDICTED: hypothetical protein LOC100626143... 110 3e-24
>ref|XP_003133335.2| PREDICTED: myc box-dependent-interacting protein 1-like, partial [Sus
scrofa].
Length = 545
Score = 698 bits (1802), Expect = 0.0
Identities = 383/543 (70%), Positives = 386/543 (71%), Gaps = 75/543 (13%)
Frame = +2
Query: 161 EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQ 340
EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQ
Sbjct: 3 EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQ 62
Query: 341 KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 520
KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA
Sbjct: 63 KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 122
Query: 521 LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT-------------------- 640
LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHH+ESLQT
Sbjct: 123 LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTAKKKDEAKIAKPVSLLEKAA 182
Query: 641 -----------XXXXXXXXXXXXXXXXXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTF 787
VFEEMNVDLQEELPSLWNSRVGFYVNTF
Sbjct: 183 PQWCQGKLQAHLVAQTNLLRNQAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTF 242
Query: 788 QSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKGNKXXXXXXX 967
QSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKGNK
Sbjct: 243 QSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKGNKSPSPPPD 302
Query: 968 XXXAATPEIRVNHXXXXXXXXXXXXXXXKSPSQLRKGXXXXXXXKHTPSKEVKQEQILSL 1147
AATPEIRVNH KSPSQLRKG KHTPSKEVKQEQILSL
Sbjct: 303 GSPAATPEIRVNHEPEPAGAATPGAALPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSL 362
Query: 1148 FDDTFVPEISVTTPSQ-------------------------------------------- 1195
FDDTFVPEISVTTPSQ
Sbjct: 363 FDDTFVPEISVTTPSQFEAPGPFSEQASLLDLDFDPLPPVASPVKAPTPSGQSIPWDLWE 422
Query: 1196 PTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEASXXXXXXXXXXXXXXXXXXX 1375
PTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEAS
Sbjct: 423 PTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEASEVAGGAQEPGEPAASEAAS 482
Query: 1376 XXXXXXXXXTFSATVNGTVKSGSAAGRLDLPPGFMFKVQAQHDYTATDTDELALKAGDLV 1555
TFSATVNGTV+SGSAAGRLDLPPGFMFKVQAQHDYTATDTDEL LKAGD+V
Sbjct: 483 SSLPAVVVETFSATVNGTVESGSAAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVV 542
Query: 1556 LVI 1564
LVI
Sbjct: 543 LVI 545
>ref|NP_001090909.1| myc box-dependent-interacting protein 1 [Sus scrofa].
Length = 434
Score = 587 bits (1512), Expect = e-168
Identities = 322/474 (67%), Positives = 333/474 (70%)
Frame = +2
Query: 161 EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQ 340
EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQ
Sbjct: 3 EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQ 62
Query: 341 KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 520
KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA
Sbjct: 63 KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 122
Query: 521 LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTXXXXXXXXXXXXXXXXXXXX 700
LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT
Sbjct: 123 LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQ 182
Query: 701 XVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQ 880
VFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQ
Sbjct: 183 KVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQ 242
Query: 881 HGSNTFTVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXXXXKSP 1060
HGSNTFTVKAQPSDNAPAKGNK AATPEIRVNH KSP
Sbjct: 243 HGSNTFTVKAQPSDNAPAKGNKSPSPPPDGSPAATPEIRVNHEPEPAGAATPGAALPKSP 302
Query: 1061 SQLRKGXXXXXXXKHTPSKEVKQEQILSLFDDTFVPEISVTTPSQPTESPAGSLPSGEPS 1240
SQ P++ +E G+ GEP+
Sbjct: 303 SQ----------------------------------------PAEASEVAGGAQEPGEPA 322
Query: 1241 AAEGTFAVAWPSQTAEPGPAQPAEASXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFSATV 1420
A+E + + P+ E TFSATV
Sbjct: 323 ASEAA-SSSLPAVVVE--------------------------------------TFSATV 343
Query: 1421 NGTVKSGSAAGRLDLPPGFMFKVQAQHDYTATDTDELALKAGDLVLVIPFQTPE 1582
NGTV+SGSAAGRLDLPPGFMFKVQAQHDYTATDTDEL LKAGD+VLVIPFQ PE
Sbjct: 344 NGTVESGSAAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPE 397
>ref|XP_003126186.1| PREDICTED: bridging integrator 2 [Sus scrofa].
Length = 508
Score = 218 bits (555), Expect = 7e-57
Identities = 115/251 (45%), Positives = 148/251 (58%)
Frame = +2
Query: 167 GSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQKD 346
G G AG A VQK L RAQEK +EG +L KD
Sbjct: 4 GKTGGVAGLFAKQVQKTLNRAQEK---------------------------AEGHKLYKD 36
Query: 347 LRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQALL 526
L+ +L++VK MHE+SK+++E LQE+Y +W G ++ I NNDLLW DY +KL DQAL
Sbjct: 37 LKNFLSAVKVMHESSKRVSETLQEIYSSEWDGHEDLKAIVGNNDLLWEDYEEKLADQALR 96
Query: 527 TMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTXXXXXXXXXXXXXXXXXXXXXV 706
TM+ Y+ QF ++K RIAKRGRKLVDYDSARHH E++Q V
Sbjct: 97 TMENYVAQFSEVKERIAKRGRKLVDYDSARHHLEAVQNAKKKDEAKTAKAEEEFNKAQIV 156
Query: 707 FEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHG 886
FE++N +L EELP L+NSR+G YV FQ+I+ L + F++EMSKLN NL +V+ LEKQH
Sbjct: 157 FEDLNKELLEELPILYNSRIGCYVTIFQNISNLRDVFYREMSKLNHNLYEVMSKLEKQHS 216
Query: 887 SNTFTVKAQPS 919
F VK S
Sbjct: 217 DKVFVVKGLSS 227
>ref|XP_003361993.1| PREDICTED: bridging integrator 2-like, partial [Sus scrofa].
Length = 488
Score = 206 bits (524), Expect = 3e-53
Identities = 128/330 (38%), Positives = 173/330 (52%), Gaps = 3/330 (0%)
Frame = +2
Query: 320 SEGTRLQKDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYH 499
+EG +L KDL+ +L++VK MHE+SK+++E LQE+Y +W G ++ I NNDLLW DY
Sbjct: 53 AEGHKLYKDLKNFLSAVKVMHESSKRVSETLQEIYSSEWDGHEDLKAIVGNNDLLWEDYE 112
Query: 500 QKLVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTXXXXXXXXXXXXX 679
+KL DQAL TM+ Y+ QF ++K RIAKRGRKLVDYDSARHH E++Q
Sbjct: 113 EKLADQALRTMENYVAQFSEVKERIAKRGRKLVDYDSARHHLEAVQNAKKKDEAKTAKAE 172
Query: 680 XXXXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDV 859
VFE++N +L EELP L+NSR+ YV FQ+I+ L + F++EMSKLN NL +V
Sbjct: 173 EEFNKAQIVFEDLNKELLEELPILYNSRICCYVTIFQNISNLRDVFYREMSKLNHNLYEV 232
Query: 860 LVSLEKQHGSNTFTVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXX 1039
+ LEKQH F VK S G++ + E+
Sbjct: 233 MSKLEKQHSDKVFVVKGLSS------GSRRSLVISSPVRTSAEEL--------------- 271
Query: 1040 XXXXKSPSQLRKGXXXXXXXKHTPSK--EVKQEQI-LSLFDDTFVPEISVTTPSQPTESP 1210
S S +G K P K EV++E S ++ +P + TP+QP
Sbjct: 272 ----ASDSAQEEG---NPEMKEEPFKDQEVEEEAAGSSSGEEEPLPACNGPTPAQPA--- 321
Query: 1211 AGSLPSGEPSAAEGTFAVAWPSQTAEPGPA 1300
PS P A E VA S PG A
Sbjct: 322 ----PSAAPEAGEAQEEVALCSPAPAPGGA 347
>ref|XP_003357576.1| PREDICTED: amphiphysin-like [Sus scrofa].
Length = 712
Score = 111 bits (278), Expect = 1e-24
Identities = 60/145 (41%), Positives = 80/145 (55%)
Frame = +2
Query: 761 RVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKG 940
RVGFYVNTF++++ LE FHKE++ L L +V+ L QH FT++ PSD+ P +
Sbjct: 232 RVGFYVNTFKNVSSLEAKFHKEIAVLCHKLYEVMTKLGDQHADKAFTIQGAPSDSGPLRI 291
Query: 941 NKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXXXXKSPSQLRKGXXXXXXXKHTPSKE 1120
K +P NH +SPSQ RKG K TP+KE
Sbjct: 292 AKTPSPPEEPSPIPSPTASPNH---TLAPASPAPARPRSPSQTRKGPPVPPLPKVTPTKE 348
Query: 1121 VKQEQILSLFDDTFVPEISVTTPSQ 1195
++QE I++ F+D FVPEISVTTPSQ
Sbjct: 349 LQQENIINFFEDNFVPEISVTTPSQ 373
Score = 50.4 bits (119), Expect = 3e-06
Identities = 19/36 (52%), Positives = 30/36 (83%)
Frame = +2
Query: 1460 DLPPGFMFKVQAQHDYTATDTDELALKAGDLVLVIP 1567
++PPGF++KV+ HD+ A ++DEL L+ GD+VLV+P
Sbjct: 635 EVPPGFLYKVETLHDFEAANSDELTLQRGDVVLVVP 670
>ref|XP_003357575.1| PREDICTED: hypothetical protein LOC100626143, partial [Sus scrofa].
Length = 405
Score = 110 bits (274), Expect = 3e-24
Identities = 52/77 (67%), Positives = 62/77 (80%)
Frame = +2
Query: 239 VLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQKDLRTYLASVKAMHEASKKLNECLQE 418
VLQKLGKADETKDEQFE+ VQNF +Q +EGTRLQ++LR YLA++K M EAS KL E L E
Sbjct: 329 VLQKLGKADETKDEQFEEYVQNFKRQEAEGTRLQRELRGYLAAIKGMQEASMKLTESLHE 388
Query: 419 VYEPDWPGRDEANKIAE 469
VYEPDW GR++ + E
Sbjct: 389 VYEPDWYGREDVKMVGE 405
Score = 72.8 bits (177), Expect = 5e-13
Identities = 41/82 (50%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Frame = +2
Query: 533 DTYLGQFPDI--KSRIAKRGRKLVDYDSARHHYESLQTXXXXXXXXXXXXXXXXXXXXXV 706
+ ++G+F ++RIAKR RKLVDYDSARHH E+LQ+ V
Sbjct: 189 EVHIGKFQHSVQQNRIAKRSRKLVDYDSARHHLEALQSSKRKDESRISKAEEEFQKAQKV 248
Query: 707 FEEMNVDLQEELPSLWNSRVGF 772
FEE NVDLQEELPSLW SR G+
Sbjct: 249 FEEFNVDLQEELPSLW-SRCGY 269
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,378,033
Number of extensions: 1070916
Number of successful extensions: 6446
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6395
Number of HSP's successfully gapped: 11
Length of query: 527
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 423
Effective length of database: 8,754,644
Effective search space: 3703214412
Effective search space used: 3703214412
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007968
(1582 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033798.1| myc box-dependent-interacting protein 1 isoform... 684 0.0
Alignment gi|NP_001076803.1| myc box-dependent-interacting protein 1 isof... 647 0.0
Alignment gi|NP_778172.1| amphiphysin [Mus musculus]. 357 2e-98
>ref|NP_033798.1| myc box-dependent-interacting protein 1 isoform 1 [Mus musculus].
Length = 588
Score = 684 bits (1764), Expect = 0.0
Identities = 373/549 (67%), Positives = 382/549 (69%), Gaps = 75/549 (13%)
Frame = +2
Query: 161 EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQ 340
EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQL+EGTRLQ
Sbjct: 3 EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQ 62
Query: 341 KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 520
KDLRTYLASVKAMHEASKKL+ECLQEVYEP+WPGRDEANKIAENNDLLWMDYHQKLVDQA
Sbjct: 63 KDLRTYLASVKAMHEASKKLSECLQEVYEPEWPGRDEANKIAENNDLLWMDYHQKLVDQA 122
Query: 521 LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT-------------------- 640
LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT
Sbjct: 123 LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKPVSLLEKAA 182
Query: 641 -----------XXXXXXXXXXXXXXXXXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTF 787
VFEEMNVDLQEELPSLWNSRVGFYVNTF
Sbjct: 183 PQWCQGKLQAHLVAQTNLLRNQAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTF 242
Query: 788 QSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKGNKXXXXXXX 967
QSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAP KGNK
Sbjct: 243 QSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPEKGNKSPSPPPD 302
Query: 968 XXXAATPEIRVNHXXXXXXXXXXXXXXXKSPSQLRKGXXXXXXXKHTPSKEVKQEQILSL 1147
AATPEIRVNH KSPSQLRKG KHTPSKE+KQEQILSL
Sbjct: 303 GSPAATPEIRVNHEPEPASGASPGATIPKSPSQLRKGPPVPPPPKHTPSKEMKQEQILSL 362
Query: 1148 FDDTFVPEISVTTPSQ-------------------------------------------- 1195
FDD FVPEISVTTPSQ
Sbjct: 363 FDDAFVPEISVTTPSQFEAPGPFSEQASLLDLDFEPLPPVASPVKAPTPSGQSIPWDLWE 422
Query: 1196 PTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEASXXXXXXXXXXXXXXXXXXX 1375
PTES AG LPSGEPS+AEG+FAVAWPSQTAEPGPAQPAEAS
Sbjct: 423 PTESQAGILPSGEPSSAEGSFAVAWPSQTAEPGPAQPAEASEVVGGAQEPGETAASEATS 482
Query: 1376 XXXXXXXXXTFSATVNGTVKSGSAAGRLDLPPGFMFKVQAQHDYTATDTDELALKAGDLV 1555
TFSATVNG V+ + GRLDLPPGFMFKVQAQHDYTATDTDEL LKAGD+V
Sbjct: 483 SSLPAVVVETFSATVNGAVEGSAGTGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVV 542
Query: 1556 LVIPFQTPE 1582
LVIPFQ PE
Sbjct: 543 LVIPFQNPE 551
>ref|NP_001076803.1| myc box-dependent-interacting protein 1 isoform 2 [Mus musculus].
Length = 477
Score = 647 bits (1670), Expect = 0.0
Identities = 346/477 (72%), Positives = 360/477 (75%), Gaps = 3/477 (0%)
Frame = +2
Query: 161 EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQ 340
EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQL+EGTRLQ
Sbjct: 3 EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQ 62
Query: 341 KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 520
KDLRTYLASVKAMHEASKKL+ECLQEVYEP+WPGRDEANKIAENNDLLWMDYHQKLVDQA
Sbjct: 63 KDLRTYLASVKAMHEASKKLSECLQEVYEPEWPGRDEANKIAENNDLLWMDYHQKLVDQA 122
Query: 521 LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTXXXXXXXXXXXXXXXXXXXX 700
LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT
Sbjct: 123 LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQ 182
Query: 701 XVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQ 880
VFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQ
Sbjct: 183 KVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQ 242
Query: 881 HGSNTFTVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXXXXKSP 1060
HGSNTFTVKAQPSDNAP KGNK AATPEIRVNH KSP
Sbjct: 243 HGSNTFTVKAQPSDNAPEKGNKSPSPPPDGSPAATPEIRVNHEPEPASGASPGATIPKSP 302
Query: 1061 SQLRKGXXXXXXXKHTPSKEVKQEQILSLFDDTFVPEISVTTPSQPTESP---AGSLPSG 1231
SQLRKG KHTPSKE+KQEQILSLFDD FVPEISVTTPSQP E+ G+ G
Sbjct: 303 SQLRKGPPVPPPPKHTPSKEMKQEQILSLFDDAFVPEISVTTPSQPAEASEVVGGAQEPG 362
Query: 1232 EPSAAEGTFAVAWPSQTAEPGPAQPAEASXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFS 1411
E +A+E T + + P+ E TFS
Sbjct: 363 ETAASEAT-SSSLPAVVVE--------------------------------------TFS 383
Query: 1412 ATVNGTVKSGSAAGRLDLPPGFMFKVQAQHDYTATDTDELALKAGDLVLVIPFQTPE 1582
ATVNG V+ + GRLDLPPGFMFKVQAQHDYTATDTDEL LKAGD+VLVIPFQ PE
Sbjct: 384 ATVNGAVEGSAGTGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPE 440
>ref|NP_778172.1| amphiphysin [Mus musculus].
Length = 686
Score = 357 bits (915), Expect = 2e-98
Identities = 184/339 (54%), Positives = 225/339 (66%)
Frame = +2
Query: 179 VTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQKDLRTY 358
+ G A NVQK+L RAQEKVLQKLGKADETKDEQFE+ VQNF +Q +EGTRLQ++LR Y
Sbjct: 4 IKTGIFAKNVQKRLNRAQEKVLQKLGKADETKDEQFEEYVQNFKRQEAEGTRLQRELRGY 63
Query: 359 LASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQALLTMDT 538
LA++K M EAS KL E L EVYEPDW GR++ + E D+LW D+HQKLVD +LLT+DT
Sbjct: 64 LAAIKGMQEASMKLTESLHEVYEPDWYGREDVKMVGEKCDVLWEDFHQKLVDGSLLTLDT 123
Query: 539 YLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTXXXXXXXXXXXXXXXXXXXXXVFEEM 718
YLGQFPDIK+RIAKR RKLVDYDSARHH E+LQ+ VFEE
Sbjct: 124 YLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQSSKRKDESRISKAEEEFQKAQKVFEEF 183
Query: 719 NVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTF 898
NVDLQEELPSLW+SRVGFYVNTF++++ LE FHKE++ L L +V+ L QH F
Sbjct: 184 NVDLQEELPSLWSSRVGFYVNTFKNVSSLEAKFHKEIAVLCHKLYEVMTKLGDQHADKAF 243
Query: 899 TVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXXXXKSPSQLRKG 1078
+++ PSD+ P + K +P NH +SPSQ RKG
Sbjct: 244 SIQGAPSDSGPLRIAKTPSPPEEPSPLPSPTASPNH---TLAPASPAPVRPRSPSQTRKG 300
Query: 1079 XXXXXXXKHTPSKEVKQEQILSLFDDTFVPEISVTTPSQ 1195
K TP+KE+KQE I++ F+D FVPEI+VTTPSQ
Sbjct: 301 PPVPPLPKVTPTKELKQENIINFFEDNFVPEINVTTPSQ 339
Score = 52.4 bits (124), Expect = 1e-06
Identities = 23/53 (43%), Positives = 38/53 (71%)
Frame = +2
Query: 1409 SATVNGTVKSGSAAGRLDLPPGFMFKVQAQHDYTATDTDELALKAGDLVLVIP 1567
+ V+ ++ +G A +LPPGF++KV+ HD+ A ++DEL L+ GD+VLV+P
Sbjct: 594 AGAVDASLSAGDATQ--ELPPGFLYKVETLHDFEAANSDELNLQRGDVVLVVP 644
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,093,868
Number of extensions: 1348285
Number of successful extensions: 7446
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7398
Number of HSP's successfully gapped: 7
Length of query: 527
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 421
Effective length of database: 12,433,743
Effective search space: 5234605803
Effective search space used: 5234605803
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007968
(1582 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_647597.1| myc box-dependent-interacting protein 1 isoform... 728 0.0
Alignment gi|NP_647593.1| myc box-dependent-interacting protein 1 isoform... 690 0.0
Alignment gi|NP_647598.1| myc box-dependent-interacting protein 1 isoform... 655 0.0
Alignment gi|NP_647596.1| myc box-dependent-interacting protein 1 isoform... 645 0.0
Alignment gi|NP_647599.1| myc box-dependent-interacting protein 1 isoform... 641 0.0
Alignment gi|NP_647594.1| myc box-dependent-interacting protein 1 isoform... 639 0.0
Alignment gi|NP_647595.1| myc box-dependent-interacting protein 1 isoform... 625 e-179
Alignment gi|NP_647600.1| myc box-dependent-interacting protein 1 isoform... 567 e-162
Alignment gi|NP_004296.1| myc box-dependent-interacting protein 1 isoform... 557 e-159
Alignment gi|NP_647601.1| myc box-dependent-interacting protein 1 isoform... 491 e-139
>ref|NP_647597.1| myc box-dependent-interacting protein 1 isoform 5 [Homo sapiens].
Length = 518
Score = 728 bits (1878), Expect = 0.0
Identities = 382/480 (79%), Positives = 387/480 (80%), Gaps = 6/480 (1%)
Frame = +2
Query: 161 EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQ 340
EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQL+EGTRLQ
Sbjct: 3 EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQ 62
Query: 341 KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 520
KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA
Sbjct: 63 KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 122
Query: 521 LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTXXXXXXXXXXXXXXXXXXXX 700
LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT
Sbjct: 123 LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQ 182
Query: 701 XVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQ 880
VFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV LEKQ
Sbjct: 183 KVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVGLEKQ 242
Query: 881 HGSNTFTVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXXXXKSP 1060
HGSNTFTVKAQPSDNAPAKGNK AATPEIRVNH KSP
Sbjct: 243 HGSNTFTVKAQPSDNAPAKGNKSPSPPDGSP-AATPEIRVNHEPEPAGGATPGATLPKSP 301
Query: 1061 SQLRKGXXXXXXXKHTPSKEVKQEQILSLFDDTFVPEISVTTPSQPTESPAGSLPSGEPS 1240
SQLRKG KHTPSKEVKQEQILSLF+DTFVPEISVTTPSQPTESPAGSLPSGEPS
Sbjct: 302 SQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQPTESPAGSLPSGEPS 361
Query: 1241 AAEGTFAVAWPSQTAEPGPAQPAEASXXXXXXXXXXXXXXXXXXXXXXXXXXXX------ 1402
AAEGTFAV+WPSQTAEPGPAQPAEAS
Sbjct: 362 AAEGTFAVSWPSQTAEPGPAQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVE 421
Query: 1403 TFSATVNGTVKSGSAAGRLDLPPGFMFKVQAQHDYTATDTDELALKAGDLVLVIPFQTPE 1582
TF ATVNGTV+ GS AGRLDLPPGFMFKVQAQHDYTATDTDEL LKAGD+VLVIPFQ PE
Sbjct: 422 TFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPE 481
>ref|NP_647593.1| myc box-dependent-interacting protein 1 isoform 1 [Homo sapiens].
Length = 593
Score = 690 bits (1781), Expect = 0.0
Identities = 382/555 (68%), Positives = 387/555 (69%), Gaps = 81/555 (14%)
Frame = +2
Query: 161 EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQ 340
EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQL+EGTRLQ
Sbjct: 3 EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQ 62
Query: 341 KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 520
KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA
Sbjct: 63 KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 122
Query: 521 LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT-------------------- 640
LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT
Sbjct: 123 LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKPVSLLEKAA 182
Query: 641 -----------XXXXXXXXXXXXXXXXXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTF 787
VFEEMNVDLQEELPSLWNSRVGFYVNTF
Sbjct: 183 PQWCQGKLQAHLVAQTNLLRNQAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTF 242
Query: 788 QSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKGNKXXXXXXX 967
QSIAGLEENFHKEMSKLNQNLNDVLV LEKQHGSNTFTVKAQPSDNAPAKGNK
Sbjct: 243 QSIAGLEENFHKEMSKLNQNLNDVLVGLEKQHGSNTFTVKAQPSDNAPAKGNK-SPSPPD 301
Query: 968 XXXAATPEIRVNHXXXXXXXXXXXXXXXKSPSQLRKGXXXXXXXKHTPSKEVKQEQILSL 1147
AATPEIRVNH KSPSQLRKG KHTPSKEVKQEQILSL
Sbjct: 302 GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSL 361
Query: 1148 FDDTFVPEISVTTPSQ-------------------------------------------- 1195
F+DTFVPEISVTTPSQ
Sbjct: 362 FEDTFVPEISVTTPSQFEAPGPFSEQASLLDLDFDPLPPVTSPVKAPTPSGQSIPWDLWE 421
Query: 1196 PTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEAS------XXXXXXXXXXXXX 1357
PTESPAGSLPSGEPSAAEGTFAV+WPSQTAEPGPAQPAEAS
Sbjct: 422 PTESPAGSLPSGEPSAAEGTFAVSWPSQTAEPGPAQPAEASEVAGGTQPAAGAQEPGETA 481
Query: 1358 XXXXXXXXXXXXXXXTFSATVNGTVKSGSAAGRLDLPPGFMFKVQAQHDYTATDTDELAL 1537
TF ATVNGTV+ GS AGRLDLPPGFMFKVQAQHDYTATDTDEL L
Sbjct: 482 ASEAASSSLPAVVVETFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQL 541
Query: 1538 KAGDLVLVIPFQTPE 1582
KAGD+VLVIPFQ PE
Sbjct: 542 KAGDVVLVIPFQNPE 556
>ref|NP_647598.1| myc box-dependent-interacting protein 1 isoform 6 [Homo sapiens].
Length = 482
Score = 655 bits (1689), Expect = 0.0
Identities = 351/474 (74%), Positives = 360/474 (75%)
Frame = +2
Query: 161 EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQ 340
EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQL+EGTRLQ
Sbjct: 3 EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQ 62
Query: 341 KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 520
KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA
Sbjct: 63 KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 122
Query: 521 LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTXXXXXXXXXXXXXXXXXXXX 700
LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT
Sbjct: 123 LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQ 182
Query: 701 XVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQ 880
VFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV LEKQ
Sbjct: 183 KVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVGLEKQ 242
Query: 881 HGSNTFTVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXXXXKSP 1060
HGSNTFTVKAQPSDNAPAKGNK AATPEIRVNH KSP
Sbjct: 243 HGSNTFTVKAQPSDNAPAKGNK-SPSPPDGSPAATPEIRVNHEPEPAGGATPGATLPKSP 301
Query: 1061 SQLRKGXXXXXXXKHTPSKEVKQEQILSLFDDTFVPEISVTTPSQPTESPAGSLPSGEPS 1240
SQLRKG KHTPSKEVKQEQILSLF+DTFVPEISVTTPSQP E+
Sbjct: 302 SQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQPAEA---------SE 352
Query: 1241 AAEGTFAVAWPSQTAEPGPAQPAEASXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFSATV 1420
A GT A + E ++ A +S TF ATV
Sbjct: 353 VAGGTQPAAGAQEPGETAASEAASSS---------------------LPAVVVETFPATV 391
Query: 1421 NGTVKSGSAAGRLDLPPGFMFKVQAQHDYTATDTDELALKAGDLVLVIPFQTPE 1582
NGTV+ GS AGRLDLPPGFMFKVQAQHDYTATDTDEL LKAGD+VLVIPFQ PE
Sbjct: 392 NGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPE 445
>ref|NP_647596.1| myc box-dependent-interacting protein 1 isoform 4 [Homo sapiens].
Length = 497
Score = 645 bits (1663), Expect = 0.0
Identities = 351/489 (71%), Positives = 360/489 (73%), Gaps = 15/489 (3%)
Frame = +2
Query: 161 EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQ 340
EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQL+EGTRLQ
Sbjct: 3 EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQ 62
Query: 341 KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 520
KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA
Sbjct: 63 KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 122
Query: 521 LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTXXXXXXXXXXXXXXXXXXXX 700
LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT
Sbjct: 123 LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQ 182
Query: 701 XVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQ 880
VFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV LEKQ
Sbjct: 183 KVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVGLEKQ 242
Query: 881 HGSNTFTVKAQP---------------SDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXX 1015
HGSNTFTVKAQP SDNAPAKGNK AATPEIRVNH
Sbjct: 243 HGSNTFTVKAQPRKKSKLFSRLRRKKNSDNAPAKGNK-SPSPPDGSPAATPEIRVNHEPE 301
Query: 1016 XXXXXXXXXXXXKSPSQLRKGXXXXXXXKHTPSKEVKQEQILSLFDDTFVPEISVTTPSQ 1195
KSPSQLRKG KHTPSKEVKQEQILSLF+DTFVPEISVTTPSQ
Sbjct: 302 PAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQ 361
Query: 1196 PTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEASXXXXXXXXXXXXXXXXXXX 1375
P E+ A GT A + E ++ A +S
Sbjct: 362 PAEA---------SEVAGGTQPAAGAQEPGETAASEAASSS------------------- 393
Query: 1376 XXXXXXXXXTFSATVNGTVKSGSAAGRLDLPPGFMFKVQAQHDYTATDTDELALKAGDLV 1555
TF ATVNGTV+ GS AGRLDLPPGFMFKVQAQHDYTATDTDEL LKAGD+V
Sbjct: 394 --LPAVVVETFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVV 451
Query: 1556 LVIPFQTPE 1582
LVIPFQ PE
Sbjct: 452 LVIPFQNPE 460
>ref|NP_647599.1| myc box-dependent-interacting protein 1 isoform 7 [Homo sapiens].
Length = 475
Score = 641 bits (1653), Expect = 0.0
Identities = 347/480 (72%), Positives = 351/480 (73%), Gaps = 6/480 (1%)
Frame = +2
Query: 161 EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQ 340
EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQL+EGTRLQ
Sbjct: 3 EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQ 62
Query: 341 KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 520
KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA
Sbjct: 63 KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 122
Query: 521 LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTXXXXXXXXXXXXXXXXXXXX 700
LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT
Sbjct: 123 LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQ 182
Query: 701 XVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQ 880
VFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV LEKQ
Sbjct: 183 KVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVGLEKQ 242
Query: 881 HGSNTFTVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXXXXKSP 1060
HGSNTFTVKAQPSDNAPAKGNK AATPEIRVNH KSP
Sbjct: 243 HGSNTFTVKAQPSDNAPAKGNK-SPSPPDGSPAATPEIRVNHEPEPAGGATPGATLPKSP 301
Query: 1061 SQLRKGXXXXXXXKHTPSKEVKQEQILSLFDDTFVPEISVTTPSQPTESPAGSLPSGEPS 1240
SQPTESPAGSLPSGEPS
Sbjct: 302 -------------------------------------------SQPTESPAGSLPSGEPS 318
Query: 1241 AAEGTFAVAWPSQTAEPGPAQPAEAS------XXXXXXXXXXXXXXXXXXXXXXXXXXXX 1402
AAEGTFAV+WPSQTAEPGPAQPAEAS
Sbjct: 319 AAEGTFAVSWPSQTAEPGPAQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVE 378
Query: 1403 TFSATVNGTVKSGSAAGRLDLPPGFMFKVQAQHDYTATDTDELALKAGDLVLVIPFQTPE 1582
TF ATVNGTV+ GS AGRLDLPPGFMFKVQAQHDYTATDTDEL LKAGD+VLVIPFQ PE
Sbjct: 379 TFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPE 438
>ref|NP_647594.1| myc box-dependent-interacting protein 1 isoform 2 [Homo sapiens].
Length = 550
Score = 639 bits (1648), Expect = 0.0
Identities = 356/523 (68%), Positives = 364/523 (69%), Gaps = 49/523 (9%)
Frame = +2
Query: 161 EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQ 340
EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQL+EGTRLQ
Sbjct: 3 EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQ 62
Query: 341 KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 520
KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA
Sbjct: 63 KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 122
Query: 521 LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTXXXXXXXXXXXXXXXXXXXX 700
LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT
Sbjct: 123 LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKPVSLLEKAA 182
Query: 701 X-------------------------------VFEEMNVDLQEELPSLWNSRVGFYVNTF 787
VFEEMNVDLQEELPSLWNSRVGFYVNTF
Sbjct: 183 PQWCQGKLQAHLVAQTNLLRNQAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTF 242
Query: 788 QSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKGNKXXXXXXX 967
QSIAGLEENFHKEMSKLNQNLNDVLV LEKQHGSNTFTVKAQPSDNAPAKGNK
Sbjct: 243 QSIAGLEENFHKEMSKLNQNLNDVLVGLEKQHGSNTFTVKAQPSDNAPAKGNKSPSPPDG 302
Query: 968 XXXAATPEIRVNHXXXXXXXXXXXXXXXKSPSQLRKGXXXXXXXKHTPSKEVKQEQILSL 1147
AATPEIRVNH KSPSQ P +Q +L L
Sbjct: 303 SP-AATPEIRVNHEPEPAGGATPGATLPKSPSQFE-----------APGPFSEQASLLDL 350
Query: 1148 FDDTFVP---EISVTTPS---------QPTESPAGSLPSGEPSAAEGTFAVAWPSQTAEP 1291
D P + TPS +PTESPAGSLPSGEPSAAEGTFAV+WPSQTAEP
Sbjct: 351 DFDPLPPVTSPVKAPTPSGQSIPWDLWEPTESPAGSLPSGEPSAAEGTFAVSWPSQTAEP 410
Query: 1292 GPAQPAEASXXXXXXXXXXXXXXXXXXXXXXXXXXXX------TFSATVNGTVKSGSAAG 1453
GPAQPAEAS TF ATVNGTV+ GS AG
Sbjct: 411 GPAQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVNGTVEGGSGAG 470
Query: 1454 RLDLPPGFMFKVQAQHDYTATDTDELALKAGDLVLVIPFQTPE 1582
RLDLPPGFMFKVQAQHDYTATDTDEL LKAGD+VLVIPFQ PE
Sbjct: 471 RLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPE 513
>ref|NP_647595.1| myc box-dependent-interacting protein 1 isoform 3 [Homo sapiens].
Length = 506
Score = 625 bits (1611), Expect = e-179
Identities = 347/511 (67%), Positives = 351/511 (68%), Gaps = 37/511 (7%)
Frame = +2
Query: 161 EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQ 340
EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQL+EGTRLQ
Sbjct: 3 EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQ 62
Query: 341 KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 520
KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA
Sbjct: 63 KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 122
Query: 521 LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT-------------------- 640
LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT
Sbjct: 123 LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKPVSLLEKAA 182
Query: 641 -----------XXXXXXXXXXXXXXXXXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTF 787
VFEEMNVDLQEELPSLWNSRVGFYVNTF
Sbjct: 183 PQWCQGKLQAHLVAQTNLLRNQAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTF 242
Query: 788 QSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKGNKXXXXXXX 967
QSIAGLEENFHKEMSKLNQNLNDVLV LEKQHGSNTFTVKAQPSDNAPAKGNK
Sbjct: 243 QSIAGLEENFHKEMSKLNQNLNDVLVGLEKQHGSNTFTVKAQPSDNAPAKGNK-SPSPPD 301
Query: 968 XXXAATPEIRVNHXXXXXXXXXXXXXXXKSPSQLRKGXXXXXXXKHTPSKEVKQEQILSL 1147
AATPEIRVNH KSP
Sbjct: 302 GSPAATPEIRVNHEPEPAGGATPGATLPKSP----------------------------- 332
Query: 1148 FDDTFVPEISVTTPSQPTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEAS--- 1318
SQPTESPAGSLPSGEPSAAEGTFAV+WPSQTAEPGPAQPAEAS
Sbjct: 333 --------------SQPTESPAGSLPSGEPSAAEGTFAVSWPSQTAEPGPAQPAEASEVA 378
Query: 1319 ---XXXXXXXXXXXXXXXXXXXXXXXXXXXXTFSATVNGTVKSGSAAGRLDLPPGFMFKV 1489
TF ATVNGTV+ GS AGRLDLPPGFMFKV
Sbjct: 379 GGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVNGTVEGGSGAGRLDLPPGFMFKV 438
Query: 1490 QAQHDYTATDTDELALKAGDLVLVIPFQTPE 1582
QAQHDYTATDTDEL LKAGD+VLVIPFQ PE
Sbjct: 439 QAQHDYTATDTDELQLKAGDVVLVIPFQNPE 469
>ref|NP_647600.1| myc box-dependent-interacting protein 1 isoform 9 [Homo sapiens].
Length = 439
Score = 567 bits (1462), Expect = e-162
Identities = 315/474 (66%), Positives = 327/474 (68%)
Frame = +2
Query: 161 EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQ 340
EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQL+EGTRLQ
Sbjct: 3 EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQ 62
Query: 341 KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 520
KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA
Sbjct: 63 KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 122
Query: 521 LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTXXXXXXXXXXXXXXXXXXXX 700
LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT
Sbjct: 123 LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQ 182
Query: 701 XVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQ 880
VFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV LEKQ
Sbjct: 183 KVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVGLEKQ 242
Query: 881 HGSNTFTVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXXXXKSP 1060
HGSNTFTVKAQPSDNAPAKGNK AATPEIRVNH KSP
Sbjct: 243 HGSNTFTVKAQPSDNAPAKGNK-SPSPPDGSPAATPEIRVNHEPEPAGGATPGATLPKSP 301
Query: 1061 SQLRKGXXXXXXXKHTPSKEVKQEQILSLFDDTFVPEISVTTPSQPTESPAGSLPSGEPS 1240
SQ + + T+ AG+ GE +
Sbjct: 302 SQ----------------------------------PAEASEVAGGTQPAAGAQEPGETA 327
Query: 1241 AAEGTFAVAWPSQTAEPGPAQPAEASXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFSATV 1420
A+E + + P+ E PA TV
Sbjct: 328 ASEAA-SSSLPAVVVETFPA--------------------------------------TV 348
Query: 1421 NGTVKSGSAAGRLDLPPGFMFKVQAQHDYTATDTDELALKAGDLVLVIPFQTPE 1582
NGTV+ GS AGRLDLPPGFMFKVQAQHDYTATDTDEL LKAGD+VLVIPFQ PE
Sbjct: 349 NGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPE 402
>ref|NP_004296.1| myc box-dependent-interacting protein 1 isoform 8 [Homo sapiens].
Length = 454
Score = 557 bits (1436), Expect = e-159
Identities = 315/489 (64%), Positives = 327/489 (66%), Gaps = 15/489 (3%)
Frame = +2
Query: 161 EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQ 340
EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQL+EGTRLQ
Sbjct: 3 EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQ 62
Query: 341 KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 520
KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA
Sbjct: 63 KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 122
Query: 521 LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTXXXXXXXXXXXXXXXXXXXX 700
LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT
Sbjct: 123 LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQ 182
Query: 701 XVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQ 880
VFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV LEKQ
Sbjct: 183 KVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVGLEKQ 242
Query: 881 HGSNTFTVKAQP---------------SDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXX 1015
HGSNTFTVKAQP SDNAPAKGNK AATPEIRVNH
Sbjct: 243 HGSNTFTVKAQPRKKSKLFSRLRRKKNSDNAPAKGNK-SPSPPDGSPAATPEIRVNHEPE 301
Query: 1016 XXXXXXXXXXXXKSPSQLRKGXXXXXXXKHTPSKEVKQEQILSLFDDTFVPEISVTTPSQ 1195
KSPSQ + +
Sbjct: 302 PAGGATPGATLPKSPSQ----------------------------------PAEASEVAG 327
Query: 1196 PTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEASXXXXXXXXXXXXXXXXXXX 1375
T+ AG+ GE +A+E + + P+ E PA
Sbjct: 328 GTQPAAGAQEPGETAASEAA-SSSLPAVVVETFPA------------------------- 361
Query: 1376 XXXXXXXXXTFSATVNGTVKSGSAAGRLDLPPGFMFKVQAQHDYTATDTDELALKAGDLV 1555
TVNGTV+ GS AGRLDLPPGFMFKVQAQHDYTATDTDEL LKAGD+V
Sbjct: 362 -------------TVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVV 408
Query: 1556 LVIPFQTPE 1582
LVIPFQ PE
Sbjct: 409 LVIPFQNPE 417
>ref|NP_647601.1| myc box-dependent-interacting protein 1 isoform 10 [Homo sapiens].
Length = 409
Score = 491 bits (1264), Expect = e-139
Identities = 254/302 (84%), Positives = 255/302 (84%)
Frame = +2
Query: 161 EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLSEGTRLQ 340
EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQL+EGTRLQ
Sbjct: 3 EMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQ 62
Query: 341 KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 520
KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA
Sbjct: 63 KDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQA 122
Query: 521 LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTXXXXXXXXXXXXXXXXXXXX 700
LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT
Sbjct: 123 LLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQ 182
Query: 701 XVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQ 880
VFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV LEKQ
Sbjct: 183 KVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVGLEKQ 242
Query: 881 HGSNTFTVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXXXXKSP 1060
HGSNTFTVKAQPSDNAPAKGNK AATPEIRVNH KSP
Sbjct: 243 HGSNTFTVKAQPSDNAPAKGNK-SPSPPDGSPAATPEIRVNHEPEPAGGATPGATLPKSP 301
Query: 1061 SQ 1066
SQ
Sbjct: 302 SQ 303
Score = 110 bits (276), Expect = 3e-24
Identities = 53/60 (88%), Positives = 55/60 (91%)
Frame = +2
Query: 1403 TFSATVNGTVKSGSAAGRLDLPPGFMFKVQAQHDYTATDTDELALKAGDLVLVIPFQTPE 1582
TF ATVNGTV+ GS AGRLDLPPGFMFKVQAQHDYTATDTDEL LKAGD+VLVIPFQ PE
Sbjct: 313 TFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPE 372
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 57,284,189
Number of extensions: 1646269
Number of successful extensions: 9535
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 9454
Number of HSP's successfully gapped: 28
Length of query: 527
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 420
Effective length of database: 14,770,016
Effective search space: 6203406720
Effective search space used: 6203406720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007968
(1582 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 468 e-129
>Sscrofa_Chr15
|| Length = 157681621
Score = 468 bits (236), Expect = e-129
Identities = 239/240 (99%)
Strand = Plus / Plus
Query: 1 ctccctcggtccccgcgtcgctcgctcgctcgccgggcggacgctccgcctccgccagtc 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29008956 ctcccttggtccccgcgtcgctcgctcgctcgccgggcggacgctccgcctccgccagtc 29009015
Query: 61 ggctcggcgctctgctgcgcggcgtggagcagagccggggcccggggctgggggctggga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29009016 ggctcggcgctctgctgcgcggcgtggagcagagccggggcccggggctgggggctggga 29009075
Query: 121 ggtcgccgcccgccacgggcaagcttgagccgcaatggctgagatgggtagcaagggggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29009076 ggtcgccgcccgccacgggcaagcttgagccgcaatggctgagatgggtagcaagggggt 29009135
Query: 181 gaccgcggggaagatcgccagcaatgtgcagaagaagctcactcgcgcgcaggagaaggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29009136 gaccgcggggaagatcgccagcaatgtgcagaagaagctcactcgcgcgcaggagaaggt 29009195
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Plus
Query: 916 cagtgacaacgcccctgcaaaagggaacaagagcccctcgcctccgcctgatggctctcc 975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29050203 cagtgacaacgcccctgcaaaagggaacaagagcccctcgcctccgcctgatggctctcc 29050262
Query: 976 tgctgccactcccgagatcagagtcaaccacgagcctgagccagccggggcagccacacc 1035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29050263 tgctgccactcccgagatcagagtcaaccacgagcctgagccagccggggcagccacacc 29050322
Query: 1036 tggggcagccctccccaagtccccgtcccag 1066
|||||||||||||||||||||||||||||||
Sbjct: 29050323 tggggcagccctccccaagtccccgtcccag 29050353
Score = 262 bits (132), Expect = 5e-67
Identities = 132/132 (100%)
Strand = Plus / Plus
Query: 1064 cagctccggaaaggcccaccagtccctccgcctcccaaacacaccccgtccaaggaggtc 1123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29051491 cagctccggaaaggcccaccagtccctccgcctcccaaacacaccccgtccaaggaggtc 29051550
Query: 1124 aagcaggagcagatcctcagcctgtttgacgacacgtttgtccctgagatcagcgtgacc 1183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29051551 aagcaggagcagatcctcagcctgtttgacgacacgtttgtccctgagatcagcgtgacc 29051610
Query: 1184 accccctcccag 1195
||||||||||||
Sbjct: 29051611 accccctcccag 29051622
Score = 218 bits (110), Expect = 7e-54
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1194 agcccacagagagtccagctggcagcctgccttccggggagcccagcgctgccgagggca 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29055643 agcccacagagagtccagctggcagcctgccttccggggagcccagcgctgccgagggca 29055702
Query: 1254 cctttgctgtggcctggcccagccagacggccgagccagggcctgcccaa 1303
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29055703 cctttgctgtggcctggcccagccagacggccgagccagggcctgcccaa 29055752
Score = 218 bits (110), Expect = 7e-54
Identities = 113/114 (99%)
Strand = Plus / Plus
Query: 1376 agttctctcccggcggtggtggtggagaccttctcagcaactgtgaacggcaccgtgaag 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 29056770 agttctctcccggcggtggtggtggagaccttctcagcaactgtgaacggcaccgtggag 29056829
Query: 1436 agcggcagcgcggcagggcgcctggacctgcctccagggttcatgttcaaggtg 1489
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29056830 agcggcagcgcggcagggcgcctggacctgcctccagggttcatgttcaaggtg 29056883
Score = 212 bits (107), Expect = 4e-52
Identities = 110/111 (99%)
Strand = Plus / Plus
Query: 564 agtcacgcattgccaagcgtgggcggaagctggtggactatgacagtgcccggcaccatt 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29040680 agtcacgcattgccaagcgtgggcggaagctggtggactatgacagtgcccggcaccatt 29040739
Query: 624 atgagtccctccaaactgccaaaaagaaggatgaagccaaaatagctaagg 674
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29040740 ttgagtccctccaaactgccaaaaagaaggatgaagccaaaatagctaagg 29040790
Score = 192 bits (97), Expect = 4e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 373 agccatgcatgaggcctccaagaagctgaatgagtgtctgcaggaggtgtacgagcctga 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29039098 agccatgcatgaggcctccaagaagctgaatgagtgtctgcaggaggtgtacgagcctga 29039157
Query: 433 ctggccgggcagggacgaagccaacaagatcgcagag 469
|||||||||||||||||||||||||||||||||||||
Sbjct: 29039158 ctggccgggcagggacgaagccaacaagatcgcagag 29039194
Score = 186 bits (94), Expect = 3e-44
Identities = 97/98 (98%)
Strand = Plus / Plus
Query: 468 agaacaatgacctgctctggatggattaccaccagaagctggtggaccaggcgctgctga 527
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 29039638 agaacaatgacctgctctggatggattaccaccaaaagctggtggaccaggcgctgctga 29039697
Query: 528 ccatggacacgtacctgggccagttcccggacatcaag 565
||||||||||||||||||||||||||||||||||||||
Sbjct: 29039698 ccatggacacgtacctgggccagttcccggacatcaag 29039735
Score = 174 bits (88), Expect = 1e-40
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 672 aggccgaggaagagctcatcaaagcccagaaggtgtttgaggagatgaacgtggacctgc 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29045538 aggccgaggaagagctcatcaaagcccagaaggtgtttgaggagatgaacgtggacctgc 29045597
Query: 732 aggaggagctgccgtccctgtggaacag 759
||||||||||||||||||||||||||||
Sbjct: 29045598 aggaggagctgccgtccctgtggaacag 29045625
Score = 168 bits (85), Expect = 6e-39
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 834 agctcaaccagaatctcaatgacgtgctggtcagcctggagaagcagcacgggagcaaca 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29047353 agctcaaccagaatctcaatgacgtgctggtcagcctggagaagcagcacgggagcaaca 29047412
Query: 894 ccttcacggtcaaggcccagcccag 918
|||||||||||||||||||||||||
Sbjct: 29047413 ccttcacggtcaaggcccagcccag 29047437
Score = 165 bits (83), Expect = 9e-38
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 237 aggtcctccagaaactggggaaggcagatgagaccaaggatgaacagtttgaacagtgtg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29033345 aggtcctccagaaactggggaaggcagatgagaccaaggatgaacagtttgaacagtgtg 29033404
Query: 297 tccagaatttcaacaagcagctg 319
|||||||||||||||||||||||
Sbjct: 29033405 tccagaatttcaacaagcagctg 29033427
Score = 159 bits (80), Expect = 6e-36
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 756 acagccgggtgggtttctatgtcaacactttccagagcatcgcgggcttggaggagaact 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29045770 acagccgggtgggtttctatgtcaacactttccagagcatcgcgggcttggaggagaact 29045829
Query: 816 tccacaaggaaatgagtaag 835
||||||||||||||||||||
Sbjct: 29045830 tccacaaggaaatgagtaag 29045849
Score = 143 bits (72), Expect = 3e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 1304 ccagcagaggcgtcggaggtggcgggtggagcccaggagcctggggagccggcagcaagt 1363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29056486 ccagcagaggcgtcggaggtggcgggtggagcccaggagcctggggagccggcagcaagt 29056545
Query: 1364 gaagcagcctcc 1375
||||||||||||
Sbjct: 29056546 gaagcagcctcc 29056557
Score = 133 bits (67), Expect = 3e-28
Identities = 79/83 (95%)
Strand = Plus / Plus
Query: 1485 aggtgcaggcccagcacgactacacggccactgacacagacgagctggcactcaaagctg 1544
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 29057103 aggtgcaggcccagcacgactacacggccactgacacagacgagctgcaactcaaggctg 29057162
Query: 1545 gagacctggtgctggtgatcccc 1567
||||| |||||||||||||||||
Sbjct: 29057163 gagacgtggtgctggtgatcccc 29057185
Score = 111 bits (56), Expect = 1e-21
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 319 gagtgagggcacccggctgcagaaggatctccgaacctacctggcctcagtcaaag 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29038864 gagtgagggcacccggctgcagaaggatctccgaacctacctggcctcagtcaaag 29038919
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,006,373
Number of extensions: 339
Number of successful extensions: 339
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 339
Number of HSP's successfully gapped: 15
Length of query: 1582
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1560
Effective length of database: 2,808,408,574
Effective search space: 4381117375440
Effective search space used: 4381117375440
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)