Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008134
(1640 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001020490.1| lanosterol 14-alpha demethylase [Bos taurus]. 787 0.0
Alignment gi|NP_001092408.1| 24-hydroxycholesterol 7-alpha-hydroxylase [B... 95 2e-19
Alignment gi|NP_001094655.1| cytochrome P450, family 26, subfamily A, pol... 92 1e-18
Alignment gi|NP_001162133.1| cytochrome P450, family 26, subfamily A, pol... 84 5e-16
Alignment gi|NP_001092837.1| cytochrome P450, family 3, subfamily A, poly... 82 1e-15
Alignment gi|XP_002703190.1| PREDICTED: cytochrome P450, family 3, subfam... 82 1e-15
Alignment gi|XP_002698187.1| PREDICTED: similar to cytochrome P450 CYP3A2... 73 6e-13
Alignment gi|XP_595414.4| PREDICTED: hypothetical protein [Bos taurus]. 73 6e-13
Alignment gi|NP_001069670.1| cytochrome P450 4B1 [Bos taurus]. 71 3e-12
Alignment gi|XP_002688603.1| PREDICTED: cytochrome P450, family 4, subfam... 71 3e-12
>ref|NP_001020490.1| lanosterol 14-alpha demethylase [Bos taurus].
Length = 502
Score = 787 bits (2032), Expect = 0.0
Identities = 394/432 (91%), Positives = 409/432 (94%), Gaps = 1/432 (0%)
Frame = +3
Query: 348 LLGLLQAGGSVLGQAMEQVTGVNLLSSLLLACAFTLILVYLFRQAIGHLAP-LPAGAKSP 524
+L LLQAGGSVLGQAMEQVTG NL S LL+ACAFTL LVYLFR A+GHLAP LP GAKSP
Sbjct: 1 MLDLLQAGGSVLGQAMEQVTGGNLASMLLIACAFTLSLVYLFRLAVGHLAPPLPTGAKSP 60
Query: 525 PYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSK 704
PYI SPIPFLGHAIAFGKSPIEFLE+AYEKYGPVFSFTMVGKTFTYLLGS+AAALLFNSK
Sbjct: 61 PYIVSPIPFLGHAIAFGKSPIEFLEDAYEKYGPVFSFTMVGKTFTYLLGSEAAALLFNSK 120
Query: 705 NEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQKKMLKSGLNIAHFRQHVSIIEKETKE 884
NEDLNAE+VYSRLTTPVFGKGVAYDVPN VFLEQKKMLKSGLNIAHFRQHVSIIEKETKE
Sbjct: 121 NEDLNAEEVYSRLTTPVFGKGVAYDVPNTVFLEQKKMLKSGLNIAHFRQHVSIIEKETKE 180
Query: 885 YFQSWGESGERNLFEALSELIILTASHCLHGKEIRSQLNEKVAQLYADLDGGFSHAAXXX 1064
YF+SWGESGE+NLFEALSELIILTASHCLHGKEIRSQLNEKVAQLYADLDGGFSHAA
Sbjct: 181 YFKSWGESGEKNLFEALSELIILTASHCLHGKEIRSQLNEKVAQLYADLDGGFSHAAWLL 240
Query: 1065 XXXXXXXSFRRRDRAHREIKNIFYKAIQKRRQSEEKIDDILQTLLDSTYKDGRPLTDDEV 1244
SFRRRDRAHREIKNIFYKAIQKRR+S EKIDDILQTLL+STYKDGRPLTDDEV
Sbjct: 241 PGWLPLPSFRRRDRAHREIKNIFYKAIQKRRESGEKIDDILQTLLESTYKDGRPLTDDEV 300
Query: 1245 AGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQEKCYLEQKTVCGEDLPPLTYDQLKDLN 1424
AGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQEKC+LEQKTVCGE+LPPLTYDQLKDLN
Sbjct: 301 AGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQEKCFLEQKTVCGENLPPLTYDQLKDLN 360
Query: 1425 LLDRCIKETLRLRPPIMTMMRMAKTPQTVAGYTIPPGHQVCVSPTVNQRLKDSWVERLDF 1604
LLDRCIKETLRLRPPIMTMMR+AKTP TVAGYTIPPGHQVCVSPTVNQRLKDSWVERLDF
Sbjct: 361 LLDRCIKETLRLRPPIMTMMRLAKTPLTVAGYTIPPGHQVCVSPTVNQRLKDSWVERLDF 420
Query: 1605 NPDRYLQDNPTS 1640
NPDRYL+D+P S
Sbjct: 421 NPDRYLEDSPAS 432
>ref|NP_001092408.1| 24-hydroxycholesterol 7-alpha-hydroxylase [Bos taurus].
Length = 469
Score = 95.1 bits (235), Expect = 2e-19
Identities = 94/384 (24%), Positives = 165/384 (42%), Gaps = 12/384 (3%)
Frame = +3
Query: 516 KSPPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLF 695
+ PP I IP++G FGK+P+EF+E A KYGPVF+ ++G T++ + +
Sbjct: 27 RRPPCIRGWIPWIGAGFEFGKTPLEFIEKARIKYGPVFTVIVMGTRMTFVTEEEGINVFL 86
Query: 696 NSKNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQKKML----KSGLNIAHFRQHVSI 863
SK ++N E + PV+ + +FL+ + L K + I + +
Sbjct: 87 KSK--EINFE---LAVQNPVYHTA---SIAKNIFLKLHEKLYITVKGKMGIFNLYKFTGQ 138
Query: 864 IEKETKEYFQSWGESGERNLFEALSELIILTASHCLHGKEIRSQLNEKVAQLYADL---D 1034
+ +E +E Q+ G G +L + + L+ + L K + K+ + + D
Sbjct: 139 LTEELQEQLQNLGTHGTTDLNKFMRHLLYPVTVNILFKKGLFPTDERKIREFHQHFQAYD 198
Query: 1035 GGFSHAAXXXXXXXXXXSFRRRDRAHREIKNIFYKAIQKRRQSEEKIDDILQTLLDSTYK 1214
GF + + S ++ KNI I+ + ++E ++Q +LD
Sbjct: 199 EGFEYGSQLPECLLRNWSKSKKWLLALFEKNI--PDIKTHKSAKENYPTVMQAVLDLLEM 256
Query: 1215 DGRPLTDDEVAGMLIGLLLAGQHTSST--TSAWMGFFLARDKTLQEKCYLEQKTV---CG 1379
+ +E GLLL S+T + W F+ + +V G
Sbjct: 257 EA-----NEQKSPNYGLLLLWASLSNTVPVAFWTFAFVLSHPNIHRTIMEGISSVFGTAG 311
Query: 1380 EDLPPLTYDQLKDLNLLDRCIKETLRLRPPIMTMMRMAKTPQTVAGYTIPPGHQVCVSPT 1559
+D ++ D LK L L+ CI ET+RLR P + ++ K P + YT+P G + +SP
Sbjct: 312 KDKIKVSEDDLKKLPLIKWCILETIRLRAPGVIARKVLK-PVKILDYTVPSGDLLMLSPF 370
Query: 1560 VNQRLKDSWVERLDFNPDRYLQDN 1631
R + E F P+R+ + N
Sbjct: 371 WLHRNPKYFPEPDLFKPERWKEAN 394
>ref|NP_001094655.1| cytochrome P450, family 26, subfamily A, polypeptide 1 isoform 1 [Bos
taurus].
Length = 497
Score = 92.0 bits (227), Expect = 1e-18
Identities = 87/391 (22%), Positives = 159/391 (40%), Gaps = 12/391 (3%)
Frame = +3
Query: 498 PLPAGAKSPPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSD 677
PLP G PF G + +FL+ KYG ++ + G+ ++G+D
Sbjct: 43 PLPPGTMG-------FPFFGETLQMVLQRRKFLQMKRRKYGFIYKTHLFGRPTVRVMGAD 95
Query: 678 AAALLFNSKNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQKKMLKSGLNIAHFRQHV 857
+ ++ ++ S T + G G ++ + ++KK++ + + +V
Sbjct: 96 NVRRILLGEHRLVSVHWPASVRT--ILGSGCLSNLHDSSHKQRKKVIMQAFSREALQCYV 153
Query: 858 SIIEKETKEYFQSWGESGERNL--FEALSELIILTASHCLHGKEIR----SQLNEKVAQL 1019
+I +E Y + W GER L + + L+ A L G E R + +++ +
Sbjct: 154 PVIAEEVGNYLEQWLSCGERGLLVYPQVKRLMFRIAMRILLGCESRLASGGEDEQQLVEA 213
Query: 1020 YADLDGGFSHAAXXXXXXXXXXSFRRRDRAHREIKNIFYKAIQKRRQSEEK--IDDILQT 1193
+ ++ + RD H I+ I++ +E D LQ
Sbjct: 214 FEEMTRNLFSLPIDVPFSGLYRGLKARDLIHARIEENIRAKIRRLPAAEAGGGCKDALQL 273
Query: 1194 LLDSTYKDGRPLTDDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQEKCYLEQKT- 1370
L++ +++ G L + LL G T+++ + + +L + +K E K
Sbjct: 274 LIEHSWERGERLDMQALKQSSTELLFGGHETTASAATSLITYLGLYPHVLQKVREELKNK 333
Query: 1371 --VC-GEDLPPLTYDQLKDLNLLDRCIKETLRLRPPIMTMMRMAKTPQTVAGYTIPPGHQ 1541
+C G L + L+ L + IKETLRL PP+ R+A + GY IP G
Sbjct: 334 GLLCKGNQDNKLDVEILEQLKYIGCVIKETLRLNPPVPGGFRVALKTFELNGYQIPKGWN 393
Query: 1542 VCVSPTVNQRLKDSWVERLDFNPDRYLQDNP 1634
V S + D + + +FNPDR+L +P
Sbjct: 394 VIYSICDTHDVADIFTNKEEFNPDRFLLPHP 424
>ref|NP_001162133.1| cytochrome P450, family 26, subfamily A, polypeptide 1 isoform 2 [Bos
taurus].
Length = 428
Score = 83.6 bits (205), Expect = 5e-16
Identities = 78/353 (22%), Positives = 147/353 (41%), Gaps = 12/353 (3%)
Frame = +3
Query: 612 KYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLTTPVFGKGVAYDVPNP 791
KYG ++ + G+ ++G+D + ++ ++ S T + G G ++ +
Sbjct: 5 KYGFIYKTHLFGRPTVRVMGADNVRRILLGEHRLVSVHWPASVRT--ILGSGCLSNLHDS 62
Query: 792 VFLEQKKMLKSGLNIAHFRQHVSIIEKETKEYFQSWGESGERNL--FEALSELIILTASH 965
++KK++ + + +V +I +E Y + W GER L + + L+ A
Sbjct: 63 SHKQRKKVIMQAFSREALQCYVPVIAEEVGNYLEQWLSCGERGLLVYPQVKRLMFRIAMR 122
Query: 966 CLHGKEIR----SQLNEKVAQLYADLDGGFSHAAXXXXXXXXXXSFRRRDRAHREIKNIF 1133
L G E R + +++ + + ++ + RD H I+
Sbjct: 123 ILLGCESRLASGGEDEQQLVEAFEEMTRNLFSLPIDVPFSGLYRGLKARDLIHARIEENI 182
Query: 1134 YKAIQKRRQSEEK--IDDILQTLLDSTYKDGRPLTDDEVAGMLIGLLLAGQHTSSTTSAW 1307
I++ +E D LQ L++ +++ G L + LL G T+++ +
Sbjct: 183 RAKIRRLPAAEAGGGCKDALQLLIEHSWERGERLDMQALKQSSTELLFGGHETTASAATS 242
Query: 1308 MGFFLARDKTLQEKCYLEQKT---VC-GEDLPPLTYDQLKDLNLLDRCIKETLRLRPPIM 1475
+ +L + +K E K +C G L + L+ L + IKETLRL PP+
Sbjct: 243 LITYLGLYPHVLQKVREELKNKGLLCKGNQDNKLDVEILEQLKYIGCVIKETLRLNPPVP 302
Query: 1476 TMMRMAKTPQTVAGYTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDRYLQDNP 1634
R+A + GY IP G V S + D + + +FNPDR+L +P
Sbjct: 303 GGFRVALKTFELNGYQIPKGWNVIYSICDTHDVADIFTNKEEFNPDRFLLPHP 355
>ref|NP_001092837.1| cytochrome P450, family 3, subfamily A, polypeptide 4 [Bos taurus].
Length = 503
Score = 82.4 bits (202), Expect = 1e-15
Identities = 109/454 (24%), Positives = 189/454 (41%), Gaps = 38/454 (8%)
Frame = +3
Query: 393 MEQVTGVNLLSSLLLACAFTLILVYLF-RQAIGHLAPLPAGAKSPPYIFSPIPFLGHAIA 569
ME + + + +LLA L+L+YL+ + G L G P P+P+ G+ ++
Sbjct: 1 MELILSFSTETWVLLATG--LVLLYLYGTYSYGLFKKL--GVPGP----RPLPYFGNILS 52
Query: 570 FGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLTT 749
+ K EF E ++KYG ++ + + D + ++ YS T
Sbjct: 53 YRKGVCEFNEECFKKYGKIWGIFEGKQPLLVITDPDMIKTVL--------VKECYSVFTN 104
Query: 750 P-VFG-KGVAYDVPNPVFLEQKKMLKSGLNIAHFRQHVSIIEKETKEYFQSWGESGE--- 914
VFG GV + + EQ K +++ L+ + + KE F G+ G+
Sbjct: 105 RRVFGPSGVMKNAISVAEDEQWKRIRTLLS-------PTFTSGKLKEMFPIIGKYGDVLV 157
Query: 915 ---------------RNLFEALSELIILTASHCLHGKEIRSQLN------EKVAQL--YA 1025
+++F A S +I + S G I S N E V +L ++
Sbjct: 158 RNLRKEAEKGTSVDIKDIFGAYSMDVITSTSF---GVNIDSLSNPQDPFVENVKKLLRFS 214
Query: 1026 DLDGGFSHAAXXXXXXXXXXSFRRRDRAHREIKNIFYKAIQKRRQSEEKID-----DILQ 1190
LD F A + + N F K++++ ++S K + D LQ
Sbjct: 215 ILDP-FLLAVVLFPFLVPILDVLNITIFPKSVVNFFTKSVKRIKESRLKDNQKPRVDFLQ 273
Query: 1191 TLLDSTYK----DGRPLTDDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQEKCYL 1358
+++S + + L+D E+ I + AG T+S+T +++ + LA +Q+K
Sbjct: 274 LMINSQNSKETDNHKALSDQELIAQSIIFIFAGYETTSSTLSFLLYILATHPDVQQKLQE 333
Query: 1359 EQKTVCGEDLPPLTYDQLKDLNLLDRCIKETLRLRPPIMTMMRMAKTPQTVAGYTIPPGH 1538
E PP TYD L + LD + ETLR+ P + + R+ K + G +IP G
Sbjct: 334 EIDATFPNKAPP-TYDVLAQMEYLDMVVNETLRMFPIAIRLERLCKKDVEIHGVSIPKGT 392
Query: 1539 QVCVSPTVNQRLKDSWVERLDFNPDRYLQDNPTS 1640
V V +V + W E +F P+R+ + N S
Sbjct: 393 TVMVPISVLHKDPQLWPEPEEFRPERFSKKNKDS 426
>ref|XP_002703190.1| PREDICTED: cytochrome P450, family 3, subfamily A, polypeptide 4-like
[Bos taurus].
Length = 503
Score = 82.0 bits (201), Expect = 1e-15
Identities = 103/449 (22%), Positives = 185/449 (41%), Gaps = 33/449 (7%)
Frame = +3
Query: 393 MEQVTGVNLLSSLLLACAFTLILVYLFRQAIGHLAPLPAGAKSPPYIFSPIPFLGHAIAF 572
ME + ++ + +LL+ +L+L+YL+ H G P P+P+ G+ +++
Sbjct: 1 MELIPSFSMETWVLLS--ISLVLLYLYG-TYSHGLFKKLGVPGP----RPLPYFGNVLSY 53
Query: 573 GKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLTT- 749
K EF E ++KYG ++ + D + ++ YS T
Sbjct: 54 RKGVCEFDEECFKKYGKMWGIFEGKHPLLVITDPDVIKTVL--------VKECYSVFTNR 105
Query: 750 PVFG-KGVAYDVPNPVFLEQKKMLKSGLNIAHFRQHVSIIEKETKEYFQSWGESGE---R 917
VFG +G+ + + EQ K +++ L+ A + KE F G+ G+ R
Sbjct: 106 KVFGPRGIMKNAVSVAEDEQWKRIRTLLSPA-------FTSGKLKEMFPIIGKYGDVLVR 158
Query: 918 NL---------------FEALSELIILTASHCLHGKEIRSQLNEKVAQ----LYADLDGG 1040
NL F A S +I + S ++ + + + V L D+
Sbjct: 159 NLRKEAEKGKSVNMKEVFGAYSMDVITSTSFGVNIDSLGNPQDPFVENAKKLLRFDILNP 218
Query: 1041 FSHAAXXXXXXXXXXSFRRRDRAHREIKNIFYKAIQKRRQSEEKID-----DILQTLLDS 1205
F + + N F K++++ ++S K + D LQ +++S
Sbjct: 219 FLLSVVLFPFLVPILDVLNITIFPKSAVNFFTKSVKRIKESRLKDNQKPRVDFLQLMINS 278
Query: 1206 TYK----DGRPLTDDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQEKCYLEQKTV 1373
+ + L+D E+ I + AG T+S+T +++ + LA +Q+K E
Sbjct: 279 QNSKETDNHKALSDQELIAQSIIFIFAGYETTSSTLSFLLYILATHPDVQQKLQEEIDAT 338
Query: 1374 CGEDLPPLTYDQLKDLNLLDRCIKETLRLRPPIMTMMRMAKTPQTVAGYTIPPGHQVCVS 1553
PP TYD L + LD + ETLR+ P + + R+ K + G +IP G V V
Sbjct: 339 FPNKAPP-TYDVLAQMEYLDMVVNETLRMFPIAIRLERLCKKDVEIHGVSIPKGTTVMVP 397
Query: 1554 PTVNQRLKDSWVERLDFNPDRYLQDNPTS 1640
+V + W E +F P+R+ + N S
Sbjct: 398 ISVLHKDPQLWPEPEEFRPERFSKKNKDS 426
>ref|XP_002698187.1| PREDICTED: similar to cytochrome P450 CYP3A24 [Bos taurus].
Length = 452
Score = 73.2 bits (178), Expect = 6e-13
Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 9/178 (5%)
Frame = +3
Query: 1125 NIFYKAIQKRRQSEEKID-----DILQTLLDSTYK----DGRPLTDDEVAGMLIGLLLAG 1277
N K++++ ++S K + D LQ +++S + + L+D E+ + + AG
Sbjct: 196 NFLAKSVKRIKESRLKDNQKPRVDFLQLMINSQNSKETDNHKALSDQELMAQSVIFIFAG 255
Query: 1278 QHTSSTTSAWMGFFLARDKTLQEKCYLEQKTVCGEDLPPLTYDQLKDLNLLDRCIKETLR 1457
T+S T +++ + LA +Q+K E PP TYD L + LD + ETLR
Sbjct: 256 YETTSNTLSFLLYILATHPDVQQKLQEEIDVTFPNKAPP-TYDVLAQMEYLDMVVNETLR 314
Query: 1458 LRPPIMTMMRMAKTPQTVAGYTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDRYLQDN 1631
+ P + + R+ K + G +IP G V V +V R W E +F P+R+ + N
Sbjct: 315 MFPITVRLDRLCKKDVKIHGVSIPKGTTVTVPISVLHRDPQLWPEPEEFRPERFSKKN 372
>ref|XP_595414.4| PREDICTED: hypothetical protein [Bos taurus].
Length = 264
Score = 73.2 bits (178), Expect = 6e-13
Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 9/178 (5%)
Frame = +3
Query: 1125 NIFYKAIQKRRQSEEKID-----DILQTLLDSTYK----DGRPLTDDEVAGMLIGLLLAG 1277
N K++++ ++S K + D LQ +++S + + L+D E+ + + AG
Sbjct: 8 NFLAKSVKRIKESRLKDNQKPRVDFLQLMINSQNSKETDNHKALSDQELMAQSVIFIFAG 67
Query: 1278 QHTSSTTSAWMGFFLARDKTLQEKCYLEQKTVCGEDLPPLTYDQLKDLNLLDRCIKETLR 1457
T+S T +++ + LA +Q+K E PP TYD L + LD + ETLR
Sbjct: 68 YETTSNTLSFLLYILATHPDVQQKLQEEIDVTFPNKAPP-TYDVLAQMEYLDMVVNETLR 126
Query: 1458 LRPPIMTMMRMAKTPQTVAGYTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDRYLQDN 1631
+ P + + R+ K + G +IP G V V +V R W E +F P+R+ + N
Sbjct: 127 MFPITVRLDRLCKKDVKIHGVSIPKGTTVTVPISVLHRDPQLWPEPEEFRPERFSKKN 184
>ref|NP_001069670.1| cytochrome P450 4B1 [Bos taurus].
Length = 511
Score = 70.9 bits (172), Expect = 3e-12
Identities = 65/315 (20%), Positives = 128/315 (40%), Gaps = 24/315 (7%)
Frame = +3
Query: 759 GKGVAYDVPNPVFLEQKKMLKSGLNIAHFRQHVSIIEKETKEYFQSWGESGER----NLF 926
GKG+ + P + + +K+L G + + +V++ + T+ W + +++
Sbjct: 123 GKGLLV-LQGPKWFQHRKLLTPGFHYDVLKPYVALFAESTRVMLDKWEKKAREQKSFDIY 181
Query: 927 EALSELIILTASHCLHGKEIRSQLNEKVAQLYAD-----------LDGGFSHAAXXXXXX 1073
+ + + + C GK S LN++ Y +D H
Sbjct: 182 SDVGHMALDSLMKCTFGKGT-SGLNDRDNNYYLSVKELTLLMQQRIDSFQYHNDFIYFLT 240
Query: 1074 XXXXSFRRR--------DRAHREIKNIFYKAIQKRRQSEEKIDDILQTLLDSTYKDGRPL 1229
F R D+ RE K ++ R ++ D L LL + ++G L
Sbjct: 241 PHGRRFLRACQVAHDHTDQVIRERKAALQDEKERERIQSKRHLDFLDILLGAWDEEGIKL 300
Query: 1230 TDDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQEKCYLEQKTVCGEDLPPLTYDQ 1409
+D+++ + + G T+++ +W+ + ++ Q +C E + + G D L +D
Sbjct: 301 SDEDLRAEVDTFMFEGHDTTTSAISWVLYCMSLYPEHQRRCREEIQEILG-DRDTLKWDD 359
Query: 1410 LKDLNLLDRCIKETLRLRPPIMTMMRMAKTP-QTVAGYTIPPGHQVCVSPTVNQRLKDSW 1586
L ++ L CIKE+ RL PP+ + R P V G ++P G + + R W
Sbjct: 360 LAEMTYLTMCIKESFRLYPPVPQVYRQLSQPVNFVDGRSLPEGSLISLHIYALHRNSTVW 419
Query: 1587 VERLDFNPDRYLQDN 1631
+ F+P R+ +N
Sbjct: 420 PDPEVFDPLRFSPEN 434
>ref|XP_002688603.1| PREDICTED: cytochrome P450, family 4, subfamily F, polypeptide
22-like [Bos taurus].
Length = 531
Score = 70.9 bits (172), Expect = 3e-12
Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 2/162 (1%)
Frame = +3
Query: 1155 RQSEEKIDDILQTLLDSTYKDGRPLTDDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDK 1334
+ + K D + LL + +DG+ L+D+++ + G T+S+ +W+ F LA+
Sbjct: 296 KAKQGKTLDFIDVLLLAKDEDGKELSDEDIRAEADTFMFEGHDTTSSGLSWVLFNLAKYP 355
Query: 1335 TLQEKCYLE-QKTVCGEDLPPLTYDQLKDLNLLDRCIKETLRLRPPI-MTMMRMAKTPQT 1508
QEKC E Q+ + G +L L +D L L CIKE+LR PP+ + R + +
Sbjct: 356 EYQEKCREEIQEVMKGRELEELEWDDLTQLPFTTMCIKESLRQFPPVTLVSRRCTEDIKL 415
Query: 1509 VAGYTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDRYLQDNP 1634
G IP G VS W + +NP R+ DNP
Sbjct: 416 PDGRIIPKGIICLVSIYGTHYNPAVWPDSKVYNPYRFDPDNP 457
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 62,917,231
Number of extensions: 1684885
Number of successful extensions: 6021
Number of sequences better than 1.0e-05: 42
Number of HSP's gapped: 5968
Number of HSP's successfully gapped: 42
Length of query: 546
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 439
Effective length of database: 14,140,958
Effective search space: 6207880562
Effective search space used: 6207880562
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008134
(1640 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532457.1| PREDICTED: similar to Cytochrome P450 51A1 (CYP... 823 0.0
Alignment gi|XP_860175.1| PREDICTED: similar to Cytochrome P450 51A1 (CYP... 755 0.0
Alignment gi|XP_538946.2| PREDICTED: similar to Cytochrome P450 39A1 (Oxy... 96 1e-19
Alignment gi|NP_001193862.1| cytochrome P450 4X1 [Canis lupus familiaris]. 88 2e-17
Alignment gi|XP_849374.1| PREDICTED: similar to cytochrome P450, family 2... 83 7e-16
Alignment gi|XP_541984.2| PREDICTED: similar to cytochrome P450, family 2... 75 2e-13
Alignment gi|XP_543933.2| PREDICTED: similar to cytochrome P450, family 2... 75 2e-13
Alignment gi|XP_541982.2| PREDICTED: similar to Cytochrome P450 4F3 (CYPI... 72 2e-12
Alignment gi|NP_001003340.1| cytochrome P450 3A12 [Canis lupus familiaris]. 70 8e-12
Alignment gi|XP_540236.2| PREDICTED: similar to Cytochrome P450 26B1 (P45... 69 1e-11
>ref|XP_532457.1| PREDICTED: similar to Cytochrome P450 51A1 (CYPLI) (P450LI) (Sterol
14-alpha demethylase) (Lanosterol 14-alpha demethylase)
(LDM) (P450-14DM) (P45014DM) isoform 1 [Canis
familiaris].
Length = 503
Score = 823 bits (2125), Expect = 0.0
Identities = 410/433 (94%), Positives = 417/433 (96%)
Frame = +3
Query: 342 MVLLGLLQAGGSVLGQAMEQVTGVNLLSSLLLACAFTLILVYLFRQAIGHLAPLPAGAKS 521
M+LLGLLQAGGSVLGQAME+VTG NLLS LL+ACAFTL LVYL R A+GHLAPLPAGAKS
Sbjct: 1 MLLLGLLQAGGSVLGQAMERVTGGNLLSMLLIACAFTLGLVYLIRLAVGHLAPLPAGAKS 60
Query: 522 PPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNS 701
PPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNS
Sbjct: 61 PPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNS 120
Query: 702 KNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQKKMLKSGLNIAHFRQHVSIIEKETK 881
KNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQKKMLKSGLNIAHFRQHVSIIEKETK
Sbjct: 121 KNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQKKMLKSGLNIAHFRQHVSIIEKETK 180
Query: 882 EYFQSWGESGERNLFEALSELIILTASHCLHGKEIRSQLNEKVAQLYADLDGGFSHAAXX 1061
EYFQSWGESGE+NLFEALSELIILTASHCLHGKEIRSQLNEKVAQLYADLDGGFSHAA
Sbjct: 181 EYFQSWGESGEKNLFEALSELIILTASHCLHGKEIRSQLNEKVAQLYADLDGGFSHAAWL 240
Query: 1062 XXXXXXXXSFRRRDRAHREIKNIFYKAIQKRRQSEEKIDDILQTLLDSTYKDGRPLTDDE 1241
SFRRRDRAHREIKNIFYKAIQKRRQSEEKIDDILQTLLDSTYKDGRPLTDDE
Sbjct: 241 LPGWLPLPSFRRRDRAHREIKNIFYKAIQKRRQSEEKIDDILQTLLDSTYKDGRPLTDDE 300
Query: 1242 VAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQEKCYLEQKTVCGEDLPPLTYDQLKDL 1421
VAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQ+KCYLEQKTVCGEDLPPLTYDQLKDL
Sbjct: 301 VAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQDKCYLEQKTVCGEDLPPLTYDQLKDL 360
Query: 1422 NLLDRCIKETLRLRPPIMTMMRMAKTPQTVAGYTIPPGHQVCVSPTVNQRLKDSWVERLD 1601
NLLDRCIKETLRLRPPIMTMMRMAKTPQT+AGYTIPPGHQVCVSPTVNQRLKDSWVERLD
Sbjct: 361 NLLDRCIKETLRLRPPIMTMMRMAKTPQTIAGYTIPPGHQVCVSPTVNQRLKDSWVERLD 420
Query: 1602 FNPDRYLQDNPTS 1640
FNPDRYLQDNP S
Sbjct: 421 FNPDRYLQDNPAS 433
>ref|XP_860175.1| PREDICTED: similar to Cytochrome P450 51A1 (CYPLI) (P450LI) (Sterol
14-alpha demethylase) (Lanosterol 14-alpha demethylase)
(LDM) (P450-14DM) (P45014DM) isoform 2 [Canis
familiaris].
Length = 475
Score = 755 bits (1949), Expect = 0.0
Identities = 378/400 (94%), Positives = 385/400 (96%)
Frame = +3
Query: 342 MVLLGLLQAGGSVLGQAMEQVTGVNLLSSLLLACAFTLILVYLFRQAIGHLAPLPAGAKS 521
M+LLGLLQAGGSVLGQAME+VTG NLLS LL+ACAFTL LVYL R A+GHLAPLPAGAKS
Sbjct: 1 MLLLGLLQAGGSVLGQAMERVTGGNLLSMLLIACAFTLGLVYLIRLAVGHLAPLPAGAKS 60
Query: 522 PPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNS 701
PPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNS
Sbjct: 61 PPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNS 120
Query: 702 KNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQKKMLKSGLNIAHFRQHVSIIEKETK 881
KNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQKKMLKSGLNIAHFRQHVSIIEKETK
Sbjct: 121 KNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQKKMLKSGLNIAHFRQHVSIIEKETK 180
Query: 882 EYFQSWGESGERNLFEALSELIILTASHCLHGKEIRSQLNEKVAQLYADLDGGFSHAAXX 1061
EYFQSWGESGE+NLFEALSELIILTASHCLHGKEIRSQLNEKVAQLYADLDGGFSHAA
Sbjct: 181 EYFQSWGESGEKNLFEALSELIILTASHCLHGKEIRSQLNEKVAQLYADLDGGFSHAAWL 240
Query: 1062 XXXXXXXXSFRRRDRAHREIKNIFYKAIQKRRQSEEKIDDILQTLLDSTYKDGRPLTDDE 1241
SFRRRDRAHREIKNIFYKAIQKRRQSEEKIDDILQTLLDSTYKDGRPLTDDE
Sbjct: 241 LPGWLPLPSFRRRDRAHREIKNIFYKAIQKRRQSEEKIDDILQTLLDSTYKDGRPLTDDE 300
Query: 1242 VAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQEKCYLEQKTVCGEDLPPLTYDQLKDL 1421
VAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQ+KCYLEQKTVCGEDLPPLTYDQLKDL
Sbjct: 301 VAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQDKCYLEQKTVCGEDLPPLTYDQLKDL 360
Query: 1422 NLLDRCIKETLRLRPPIMTMMRMAKTPQTVAGYTIPPGHQ 1541
NLLDRCIKETLRLRPPIMTMMRMAKTPQT+AGYTIPPGHQ
Sbjct: 361 NLLDRCIKETLRLRPPIMTMMRMAKTPQTIAGYTIPPGHQ 400
>ref|XP_538946.2| PREDICTED: similar to Cytochrome P450 39A1 (Oxysterol
7-alpha-hydroxylase) (hCYP39A1) [Canis familiaris].
Length = 469
Score = 95.5 bits (236), Expect = 1e-19
Identities = 93/383 (24%), Positives = 167/383 (43%), Gaps = 11/383 (2%)
Frame = +3
Query: 516 KSPPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLF 695
+ PP I IP++G FGK+P+EF+E A KYGP+F+ ++G T++ + +
Sbjct: 27 RGPPCIRGWIPWIGAGFEFGKAPLEFIEKARIKYGPIFTVFVMGNRMTFVTEEEGINVFL 86
Query: 696 NSKNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQKK----MLKSGLNIAHFRQHVSI 863
SK ++N E + PV+ +P FL + M+K + + Q
Sbjct: 87 KSK--EVNFE---LAVQNPVYRTA---SIPKNTFLALHEKLYIMMKGKIGTFNLYQFTGQ 138
Query: 864 IEKETKEYFQSWGESGERNLFEALSELIILTASHCLHGKEIRSQLNEKVAQLYADL---D 1034
+ +E E ++ G G L + L+ + L K + + K+ + Y D
Sbjct: 139 LTEELHEQLENLGTHGTMELNHLVRNLLYPVTMNMLFKKGLFPRNEGKIREFYQHFQAYD 198
Query: 1035 GGFSHAAXXXXXXXXXXSFRRRDRAHREIKNIFYKAIQKRRQSEEKIDDILQTLLDSTYK 1214
GF + + S ++ KNI I+ + +++ ++QT+LD
Sbjct: 199 EGFEYGSQMPECLLRNWSKSKKWLLALFEKNI--PDIKTYKSAKDNSMTLMQTMLDIVEM 256
Query: 1215 DGRPLTDDEVAGMLIGLLLAGQHTSSTTSAW-MGFFLAR---DKTLQEKCYLEQKTVCGE 1382
+ + +++ + LL A + + W + F L+ KT+ E T G+
Sbjct: 257 ERK---EEKSPNYGLLLLWASLSNAVPVAFWTLAFVLSHPSIHKTIMEGVSSVFGT-AGK 312
Query: 1383 DLPPLTYDQLKDLNLLDRCIKETLRLRPPIMTMMRMAKTPQTVAGYTIPPGHQVCVSPTV 1562
D ++ D LK L L+ CI E +RLR P + ++ K P + YT+P G + +SP
Sbjct: 313 DKMKVSEDDLKKLPLIKWCILEAIRLRAPGIITRKVLK-PVKILNYTVPSGDLLMLSPFW 371
Query: 1563 NQRLKDSWVERLDFNPDRYLQDN 1631
R + + E F P+R+ + N
Sbjct: 372 LHRNPEYFPEPELFKPERWKKAN 394
>ref|NP_001193862.1| cytochrome P450 4X1 [Canis lupus familiaris].
Length = 507
Score = 88.2 bits (217), Expect = 2e-17
Identities = 104/436 (23%), Positives = 178/436 (40%), Gaps = 35/436 (8%)
Frame = +3
Query: 429 LLLACAFTLIL-------VYLFR-QAIGHLAPLPAGAKSPPYIFSPIPFLGHAIAFGKSP 584
L LA AF L L +YL R + + L P PA PP + F GH
Sbjct: 14 LYLAFAFCLALGLLQAIKLYLRRLRLLRDLCPFPA----PPTHW----FYGHQKLLQDGK 65
Query: 585 IEFLENAYEKYGPVFSFTMVG--KTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLTTPVF 758
IE LE EKY F + VG + F Y+ D A D ++ +Y L P
Sbjct: 66 IEKLEELVEKYPCAFPY-WVGPFQAFFYIYDPDYAKTFLG--RTDPKSKYLYKFLI-PCL 121
Query: 759 GKGVAYDVPNPVFLEQKKMLKSGLNIAHFRQHVSIIEKETKEYFQSWGE-SGERN----L 923
G G+ ++ + + + +L G N+ + ++ ++ W + G ++ +
Sbjct: 122 GNGLV-NLEGSKWFQHRCLLTPGFNVNILKSYIKVMAHSVNTMLGKWEKICGTQDTVVEV 180
Query: 924 FEALSELIILTASHCLHGKEIRSQLNEK----VAQLYADLDGGFSHAAXXXXXXXXXXSF 1091
FE ++ + + C +E Q++ V + F F
Sbjct: 181 FEHINLMTLDVLMKCAFSQETNCQISSNHDLYVKTTFEASKINFYRLYSFLHHHDIIFKF 240
Query: 1092 RRRDRAHREIKNIFY----KAIQKRRQ-----------SEEKIDDILQTLLDSTYKDGRP 1226
+ +E+ I + K IQ R++ + K D L +L + ++G
Sbjct: 241 SPQGHRLQELVKILHQYTEKVIQDRKKLLKDEKKHGNTQKRKDQDYLDIILSAQAENGNS 300
Query: 1227 LTDDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQEKCYLEQKTVCGEDLPPLTYD 1406
+D ++ + +LAG T + + +W+ + LA + QE+C E + + D +T+D
Sbjct: 301 FSDTDLRSEVNTFILAGHDTMAGSISWLLYHLALNPEHQERCRQEIRGIL-RDRSSITWD 359
Query: 1407 QLKDLNLLDRCIKETLRLRPPIMTMMRMAKTPQTVA-GYTIPPGHQVCVSPTVNQRLKDS 1583
QL +++ CIKE+LRL PPI ++ R P T G ++P G V +S
Sbjct: 360 QLGEMSYTTMCIKESLRLAPPIPSISRELSKPITFPDGRSLPAGITVVLSIWGLHHNSAI 419
Query: 1584 WVERLDFNPDRYLQDN 1631
W F+P R+ Q+N
Sbjct: 420 WENPKVFDPLRFSQEN 435
>ref|XP_849374.1| PREDICTED: similar to cytochrome P450, family 26, subfamily A,
polypeptide 1 isoform 1 isoform 2 [Canis familiaris].
Length = 497
Score = 83.2 bits (204), Expect = 7e-16
Identities = 86/391 (21%), Positives = 159/391 (40%), Gaps = 12/391 (3%)
Frame = +3
Query: 498 PLPAGAKSPPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSD 677
PLP G PF G + +FL+ KYG ++ + G+ ++G+D
Sbjct: 43 PLPPGTMG-------FPFFGETLQMVLQRRKFLQMKRRKYGFIYKTHLFGRPTVRVMGAD 95
Query: 678 AAALLFNSKNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQKKMLKSGLNIAHFRQHV 857
+ ++ ++ S T + G G ++ + ++KK++ + + +V
Sbjct: 96 NVRRILLGEHRLVSVHWPASVRT--ILGSGCLSNLHDSSHKQRKKVIMRAFSREALQCYV 153
Query: 858 SIIEKETKEYFQSWGESGERNL--FEALSELIILTASHCLHGKEIR----SQLNEKVAQL 1019
+I +E Q W GER L + + L+ + L G E R +++ +
Sbjct: 154 PVIAEEVGTCLQQWLSRGERGLLVYPQVKRLMFRISMRILLGCEPRLASGGDAEQQLVEA 213
Query: 1020 YADLDGGFSHAAXXXXXXXXXXSFRRRDRAHREIK-NIFYKAIQKRR-QSEEKIDDILQT 1193
+ ++ + R+ H I+ NI K R Q+ D LQ
Sbjct: 214 FEEMTRNLFSLPIDVPFSGLYRGMKARNLIHARIEENIRAKICGLRTAQAGGGCKDALQL 273
Query: 1194 LLDSTYKDGRPLTDDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQEKCYLEQKT- 1370
L++ +++ G L + LL G T+++ + + +L + +K E K+
Sbjct: 274 LIEHSWERGERLDMQALKQSSTELLFGGHETTASAATSLITYLGLYPHVLQKVREELKSK 333
Query: 1371 --VCGEDLP-PLTYDQLKDLNLLDRCIKETLRLRPPIMTMMRMAKTPQTVAGYTIPPGHQ 1541
+C + L + L+ L + IKETLRL PP+ R+A + GY IP G
Sbjct: 334 GLLCKSNQDNKLDIEILEQLKYIGCVIKETLRLNPPVPGGFRVALKTFELNGYQIPKGWN 393
Query: 1542 VCVSPTVNQRLKDSWVERLDFNPDRYLQDNP 1634
V S + D + + +FNPDR++ +P
Sbjct: 394 VIYSICDTHDVADIFTNKDEFNPDRFMLPHP 424
>ref|XP_541984.2| PREDICTED: similar to cytochrome P450, family 2, subfamily E,
polypeptide 2 homolog [Canis familiaris].
Length = 531
Score = 75.1 bits (183), Expect = 2e-13
Identities = 62/216 (28%), Positives = 93/216 (43%), Gaps = 35/216 (16%)
Frame = +3
Query: 1092 RRRDRAHREIKNIFY--------------------KAIQKRRQS-------------EEK 1172
RR+ R H I I+Y + IQ+RRQ+ + K
Sbjct: 242 RRQYRLHHHIDFIYYLTADGRRFRQACDTVHRFTTEVIQERRQALRQQGAETWLKGKQGK 301
Query: 1173 IDDILQTLLDSTYKDGRPLTDDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQEKC 1352
D + LL + +DGR L+D+++ + G T+S+ +W+ F LA+ QEKC
Sbjct: 302 TLDFIDVLLLARDEDGRELSDEDIRAEADTFMFEGHDTTSSGLSWVLFNLAKYPEYQEKC 361
Query: 1353 YLE-QKTVCGEDLPPLTYDQLKDLNLLDRCIKETLRLRPPI-MTMMRMAKTPQTVAGYTI 1526
E Q+ + G +L L +D L L CIKE+LR PP+ + R + + G I
Sbjct: 362 REEIQEVMKGRELEELEWDDLTQLPFTTMCIKESLRQFPPVTLVSRRCTEDIKLPDGRII 421
Query: 1527 PPGHQVCVSPTVNQRLKDSWVERLDFNPDRYLQDNP 1634
P G VS W + +NP R+ DNP
Sbjct: 422 PKGIICLVSIYGTHHNPTVWPDSKVYNPYRFDPDNP 457
>ref|XP_543933.2| PREDICTED: similar to cytochrome P450, family 26, subfamily A,
polypeptide 1 isoform 2 isoform 1 [Canis familiaris].
Length = 428
Score = 74.7 bits (182), Expect = 2e-13
Identities = 77/353 (21%), Positives = 147/353 (41%), Gaps = 12/353 (3%)
Frame = +3
Query: 612 KYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLTTPVFGKGVAYDVPNP 791
KYG ++ + G+ ++G+D + ++ ++ S T + G G ++ +
Sbjct: 5 KYGFIYKTHLFGRPTVRVMGADNVRRILLGEHRLVSVHWPASVRT--ILGSGCLSNLHDS 62
Query: 792 VFLEQKKMLKSGLNIAHFRQHVSIIEKETKEYFQSWGESGERNL--FEALSELIILTASH 965
++KK++ + + +V +I +E Q W GER L + + L+ +
Sbjct: 63 SHKQRKKVIMRAFSREALQCYVPVIAEEVGTCLQQWLSRGERGLLVYPQVKRLMFRISMR 122
Query: 966 CLHGKEIR----SQLNEKVAQLYADLDGGFSHAAXXXXXXXXXXSFRRRDRAHREIK-NI 1130
L G E R +++ + + ++ + R+ H I+ NI
Sbjct: 123 ILLGCEPRLASGGDAEQQLVEAFEEMTRNLFSLPIDVPFSGLYRGMKARNLIHARIEENI 182
Query: 1131 FYKAIQKRR-QSEEKIDDILQTLLDSTYKDGRPLTDDEVAGMLIGLLLAGQHTSSTTSAW 1307
K R Q+ D LQ L++ +++ G L + LL G T+++ +
Sbjct: 183 RAKICGLRTAQAGGGCKDALQLLIEHSWERGERLDMQALKQSSTELLFGGHETTASAATS 242
Query: 1308 MGFFLARDKTLQEKCYLEQKT---VCGEDLP-PLTYDQLKDLNLLDRCIKETLRLRPPIM 1475
+ +L + +K E K+ +C + L + L+ L + IKETLRL PP+
Sbjct: 243 LITYLGLYPHVLQKVREELKSKGLLCKSNQDNKLDIEILEQLKYIGCVIKETLRLNPPVP 302
Query: 1476 TMMRMAKTPQTVAGYTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDRYLQDNP 1634
R+A + GY IP G V S + D + + +FNPDR++ +P
Sbjct: 303 GGFRVALKTFELNGYQIPKGWNVIYSICDTHDVADIFTNKDEFNPDRFMLPHP 355
>ref|XP_541982.2| PREDICTED: similar to Cytochrome P450 4F3 (CYPIVF3) (Leukotriene-B(4)
omega-hydroxylase) (Leukotriene-B(4) 20-monooxygenase)
(Cytochrome P450-LTB-omega) [Canis familiaris].
Length = 465
Score = 72.0 bits (175), Expect = 2e-12
Identities = 75/327 (22%), Positives = 131/327 (40%), Gaps = 26/327 (7%)
Frame = +3
Query: 729 VYSRLTTPVFGKGVAYDVPNPVFLEQKKMLKSGLNIAHFRQHVSIIEKETKEYFQSWGE- 905
V+ L P G G+ + + ++ML + + +V I T W
Sbjct: 123 VFYSLLKPWLGDGLLLSAGDK-WSSHRRMLTPAFHFNILKPYVKIFNYSTNVMHAKWKRL 181
Query: 906 ----SGERNLFEALSELIILTASHCLHG-----KEIRSQLNEKVAQLYADLDGGFSHAAX 1058
S ++FE +S + + + C+ +E S+ + +L A +
Sbjct: 182 VSEGSTHLDMFEHISLMTLDSLQKCVFSFDSNCQEKPSEYIAAILELSALVAKRHQQILH 241
Query: 1059 XXXXXXXXXSFRRRDRAHREIKNIFYKAIQKRRQS--EEKIDDILQT------------L 1196
+R RA R + N IQ+RR++ + +DD L T L
Sbjct: 242 MDFLYYLTPDGQRFRRACRLVHNFTDAVIQERRRTLPVQGVDDFLMTKAKSKTLDFIDVL 301
Query: 1197 LDSTYKDGRPLTDDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQEKCYLE-QKTV 1373
L S +DG+ L+D ++ + G T+++ +W+ F LA+ QE+C E Q+ +
Sbjct: 302 LLSKDEDGKQLSDKDIRAEADTFMFEGHDTTASGLSWVLFNLAKHPEYQERCRQEVQELL 361
Query: 1374 CGEDLPPLTYDQLKDLNLLDRCIKETLRLRPPIMTMMRMAKTPQTVA-GYTIPPGHQVCV 1550
+ + +D L L L CIKE+LRL PP+ + R ++ G IP G +
Sbjct: 362 RDREPQEIEWDDLAKLPFLTMCIKESLRLHPPVTVISRCCTQDIVLSDGRVIPKGVTCLI 421
Query: 1551 SPTVNQRLKDSWVERLDFNPDRYLQDN 1631
S W + +NP R+ +N
Sbjct: 422 SIFGTHHNPSVWPDPEVYNPLRFDPEN 448
>ref|NP_001003340.1| cytochrome P450 3A12 [Canis lupus familiaris].
Length = 503
Score = 69.7 bits (169), Expect = 8e-12
Identities = 53/186 (28%), Positives = 90/186 (48%), Gaps = 10/186 (5%)
Frame = +3
Query: 1113 REIKNIFYKAIQKRRQSEEKID-----DILQTLLDSTYKDG----RPLTDDEVAGMLIGL 1265
+++ + F K++++ ++S K D LQ +++S + L+D E+ I
Sbjct: 243 KKVTDFFRKSVERMKESRLKDKQKHRVDFLQLMINSQNSKEMDTHKALSDLELVAQSIIF 302
Query: 1266 LLAGQHTSSTTSAWMGFFLARDKTLQEKCYLE-QKTVCGEDLPPLTYDQLKDLNLLDRCI 1442
+ AG T+ST+ +++ + LA +Q+K E T + LP TYD L + LD +
Sbjct: 303 IFAGYETTSTSLSFLMYELATHPDVQQKLQEEIDATFPNKALP--TYDALVQMEYLDMVL 360
Query: 1443 KETLRLRPPIMTMMRMAKTPQTVAGYTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDRYL 1622
ETLRL P + R+ K ++G IP G V V R + W E +F P+R+
Sbjct: 361 NETLRLYPIAGRLERVCKKDVEISGVFIPKGTVVMVPTFTLHRDQSLWPEPEEFRPERFS 420
Query: 1623 QDNPTS 1640
+ N S
Sbjct: 421 RKNKDS 426
>ref|XP_540236.2| PREDICTED: similar to Cytochrome P450 26B1 (P450 26A2) (P450 retinoic
acid-inactivating 2) (P450RAI-2) (Retinoic-acid
metabolizing cytochrome) [Canis familiaris].
Length = 512
Score = 69.3 bits (168), Expect = 1e-11
Identities = 93/428 (21%), Positives = 171/428 (39%), Gaps = 22/428 (5%)
Frame = +3
Query: 408 GVNLLSSL--LLACAFTLILVYLFRQAIGHLA-----------PLPAGAKSPPYIFSPIP 548
G+ L+S+L L AC ++ L+ Q + L P+P G+ P I
Sbjct: 5 GLELVSALATLAACLVSVTLLLAVSQQLWQLRWAATRDKSCKLPIPKGSMGFPLIGET-- 62
Query: 549 FLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAED 728
GH + G F + EKYG VF ++G+ + G++ + ++ ++ E
Sbjct: 63 --GHWLLQGSG---FQSSRREKYGNVFKTHLLGRPLIRVTGAENVRKILMGEHHLVSTE- 116
Query: 729 VYSRLTTPVFGKGVAYDVPNPVFLEQKKMLKSGLNIAHFRQHVSIIEKETKEYFQSWGES 908
+ R T + G + + ++K+ + + ++ I ++ ++W
Sbjct: 117 -WPRSTRMLLGPNTVANSIGDIHRNKRKVFSKIFSHEALQSYLPKIRLVIQDTLRAWSSH 175
Query: 909 GER-NLFEALSELIILTASHCLHGKEIRSQLNEKVAQLYADLDGGFSHAAXXXXXXXXXX 1085
E N+++ +L A L G I + + ++Y F
Sbjct: 176 PEAINVYQETQKLTFRMAIRVLLGFSIPEEDLGHLFEVYQQ----FVENVFSLPVDLPFS 231
Query: 1086 SFRRRDRAHREIKNIFYKAIQKRRQSEEKID--DILQTLLDSTYKDGRPLTDDEVAGMLI 1259
+RR +A + ++ KAI+++ Q + D D L L++S+ + G+ +T E+ +
Sbjct: 232 GYRRGIQARQILQKGLEKAIREKLQCTQGKDYSDALDILIESSKEHGKEMTMQELKDGTL 291
Query: 1260 GLLLAGQHTSSTTSAWMGFFLARDKTLQEKCYLE---QKTVCGEDLP---PLTYDQLKDL 1421
L+ A T+++ S + L + + EK E Q + P L D L L
Sbjct: 292 ELIFAAYATTASASTSLIMQLLKHPAVLEKLREELRAQGILHSGGCPCEGTLRLDTLSRL 351
Query: 1422 NLLDRCIKETLRLRPPIMTMMRMAKTPQTVAGYTIPPGHQVCVSPTVNQRLKDSWVERLD 1601
+ LD IKE +RL PI R + G+ IP G V S + +
Sbjct: 352 HYLDCVIKEVMRLFTPISGGYRTVLQTFELDGFQIPKGWSVMYSIRDTHDTAPVFKDVNV 411
Query: 1602 FNPDRYLQ 1625
F+PDR+ Q
Sbjct: 412 FDPDRFGQ 419
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 65,650,335
Number of extensions: 1738897
Number of successful extensions: 6162
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 6126
Number of HSP's successfully gapped: 29
Length of query: 546
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 438
Effective length of database: 15,274,216
Effective search space: 6690106608
Effective search space used: 6690106608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008134
(1640 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999597.1| lanosterol 14-alpha demethylase [Sus scrofa]. 842 0.0
Alignment gi|XP_003357480.1| PREDICTED: lanosterol 14-alpha demethylase-l... 825 0.0
Alignment gi|NP_001094497.1| 24-hydroxycholesterol 7-alpha-hydroxylase [S... 91 2e-18
Alignment gi|XP_003356523.1| PREDICTED: cytochrome P450 4X1-like [Sus scr... 89 7e-18
Alignment gi|NP_999588.1| cytochrome P450 3A29 [Sus scrofa]. 72 1e-12
Alignment gi|XP_003125081.1| PREDICTED: cytochrome P450 26B1-like [Sus sc... 71 2e-12
Alignment gi|XP_003354173.1| PREDICTED: cytochrome P450 4F22-like [Sus sc... 69 6e-12
Alignment gi|XP_003354175.1| PREDICTED: leukotriene-B(4) omega-hydroxylas... 69 1e-11
Alignment gi|XP_001928154.2| PREDICTED: cytochrome P450 26A1 [Sus scrofa]. 67 2e-11
Alignment gi|NP_001128296.1| cytochrome P450 3A46 [Sus scrofa]. 64 2e-10
>ref|NP_999597.1| lanosterol 14-alpha demethylase [Sus scrofa].
Length = 503
Score = 842 bits (2175), Expect = 0.0
Identities = 422/433 (97%), Positives = 422/433 (97%)
Frame = +3
Query: 342 MVLLGLLQAGGSVLGQAMEQVTGVNLLSSLLLACAFTLILVYLFRQAIGHLAPLPAGAKS 521
MVLLGLLQAGGSVLGQAMEQVTGVNLLSSLLLACAFTLILVYLFRQAIGHLAPLPAGAKS
Sbjct: 1 MVLLGLLQAGGSVLGQAMEQVTGVNLLSSLLLACAFTLILVYLFRQAIGHLAPLPAGAKS 60
Query: 522 PPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNS 701
PPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNS
Sbjct: 61 PPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNS 120
Query: 702 KNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQKKMLKSGLNIAHFRQHVSIIEKETK 881
KNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQKKMLKSGLNIAHFRQHVSIIEKETK
Sbjct: 121 KNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQKKMLKSGLNIAHFRQHVSIIEKETK 180
Query: 882 EYFQSWGESGERNLFEALSELIILTASHCLHGKEIRSQLNEKVAQLYADLDGGFSHAAXX 1061
EYFQSWGESGERNLFEALSELIILTASHCLHGKEIRSQLNEKVAQLYADLDGGFSHAA
Sbjct: 181 EYFQSWGESGERNLFEALSELIILTASHCLHGKEIRSQLNEKVAQLYADLDGGFSHAAWL 240
Query: 1062 XXXXXXXXSFRRRDRAHREIKNIFYKAIQKRRQSEEKIDDILQTLLDSTYKDGRPLTDDE 1241
SFRRRDRAHREIKNIFYKAIQKRRQSEEKIDDILQTLLDSTYKDGRPLTDDE
Sbjct: 241 LPGWLPLPSFRRRDRAHREIKNIFYKAIQKRRQSEEKIDDILQTLLDSTYKDGRPLTDDE 300
Query: 1242 VAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQEKCYLEQKTVCGEDLPPLTYDQLKDL 1421
VAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQEKCYLEQKTVCGEDLPPLTYDQLKDL
Sbjct: 301 VAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQEKCYLEQKTVCGEDLPPLTYDQLKDL 360
Query: 1422 NLLDRCIKETLRLRPPIMTMMRMAKTPQTVAGYTIPPGHQVCVSPTVNQRLKDSWVERLD 1601
NLLDRCIKETLRLRPPIMTMMRMAKTPQTVAGYTIPPGHQVCVSPTVNQRLKDSWVERLD
Sbjct: 361 NLLDRCIKETLRLRPPIMTMMRMAKTPQTVAGYTIPPGHQVCVSPTVNQRLKDSWVERLD 420
Query: 1602 FNPDRYLQDNPTS 1640
FNPDRYLQDNP S
Sbjct: 421 FNPDRYLQDNPAS 433
>ref|XP_003357480.1| PREDICTED: lanosterol 14-alpha demethylase-like [Sus scrofa].
Length = 429
Score = 825 bits (2130), Expect = 0.0
Identities = 413/423 (97%), Positives = 413/423 (97%)
Frame = +3
Query: 135 EAPPTPVTYRVVREGAGSRGCGWVQQGACGPAPLSDAHLLASLPQWFRRSRGDLGLQNPQ 314
EAPPTPVTYRVVREGAGSRGCGWVQQGACGPAPLSDAHLLASLPQWFRRSRGDLGLQNPQ
Sbjct: 4 EAPPTPVTYRVVREGAGSRGCGWVQQGACGPAPLSDAHLLASLPQWFRRSRGDLGLQNPQ 63
Query: 315 QTDVRVAAGMVLLGLLQAGGSVLGQAMEQVTGVNLLSSLLLACAFTLILVYLFRQAIGHL 494
QTDVRVAAGMVLLGLLQAGGSVLGQAMEQVTGVNLLSSLLLACAFTLILVYLFRQAIGHL
Sbjct: 64 QTDVRVAAGMVLLGLLQAGGSVLGQAMEQVTGVNLLSSLLLACAFTLILVYLFRQAIGHL 123
Query: 495 APLPAGAKSPPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGS 674
APLPAGAKSPPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGS
Sbjct: 124 APLPAGAKSPPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGS 183
Query: 675 DAAALLFNSKNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQKKMLKSGLNIAHFRQH 854
DAAALLFNSKNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQKKMLKSGLNIAHFRQH
Sbjct: 184 DAAALLFNSKNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQKKMLKSGLNIAHFRQH 243
Query: 855 VSIIEKETKEYFQSWGESGERNLFEALSELIILTASHCLHGKEIRSQLNEKVAQLYADLD 1034
VSIIEKETKEYFQSWGESGERNLFEALSELIILTASHCLHGKEIRSQLNEKVAQLYADLD
Sbjct: 244 VSIIEKETKEYFQSWGESGERNLFEALSELIILTASHCLHGKEIRSQLNEKVAQLYADLD 303
Query: 1035 GGFSHAAXXXXXXXXXXSFRRRDRAHREIKNIFYKAIQKRRQSEEKIDDILQTLLDSTYK 1214
GGFSHAA SFRRRDRAHREIKNIFYKAIQKRRQSEEKIDDILQTLLDSTYK
Sbjct: 304 GGFSHAAWLLPGWLPLPSFRRRDRAHREIKNIFYKAIQKRRQSEEKIDDILQTLLDSTYK 363
Query: 1215 DGRPLTDDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQEKCYLEQKTVCGEDLPP 1394
DGRPLTDDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQEKCYLEQKTVCGEDLPP
Sbjct: 364 DGRPLTDDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQEKCYLEQKTVCGEDLPP 423
Query: 1395 LTY 1403
LTY
Sbjct: 424 LTY 426
>ref|NP_001094497.1| 24-hydroxycholesterol 7-alpha-hydroxylase [Sus scrofa].
Length = 469
Score = 90.9 bits (224), Expect = 2e-18
Identities = 91/385 (23%), Positives = 166/385 (43%), Gaps = 13/385 (3%)
Frame = +3
Query: 516 KSPPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLF 695
+ PP I IP++G FGK+P+EF+E A KYGP+F+ +G T++ + +
Sbjct: 27 RGPPCIGGWIPWIGAGFEFGKAPLEFIEKARIKYGPIFTVLAMGTRMTFVTEEEGMNVFL 86
Query: 696 NSKNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQKK----MLKSGLNIAHFRQHVSI 863
SK ++N E + PV+ +P +FL+ + M+K + + Q
Sbjct: 87 KSK--EVNFE---LAVQNPVYRTA---SIPKNIFLKLHEKLCVMMKGKMGTFNLYQFTGQ 138
Query: 864 IEKETKEYFQSWGESGERNLFEALSELIILTASHCLHGKEIRSQLNEKVAQLYADL---D 1034
+ +E + ++ G G +L + L+ + L K + K+ + + D
Sbjct: 139 LTEELHKQLENLGTHGTMDLNNLVRHLLYPVTVNVLFKKGLFPTNERKIREFHQHFQAYD 198
Query: 1035 GGFSHAAXXXXXXXXXXSFRRRDRAHREIKNIFYKAIQKRRQSEEKIDDILQTLLDSTYK 1214
GF + + S + KNI I+ + +++ I+Q +LD
Sbjct: 199 EGFEYGSQLPERLLRNWSKSKNWLLALFEKNI--PDIKTYKSAKDHSQTIMQDILDLLEM 256
Query: 1215 DGRPLTDDEVA---GMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQEKCYLEQKTV---C 1376
+ T+++++ G+L LL A + + W F+ + +V
Sbjct: 257 E----TNEQMSPNYGLL--LLWASLSNAVPVTFWTLAFILSHPNIHRTILEGISSVFGTT 310
Query: 1377 GEDLPPLTYDQLKDLNLLDRCIKETLRLRPPIMTMMRMAKTPQTVAGYTIPPGHQVCVSP 1556
G+D ++ D LK L L+ CI ET+RLR P + ++ K P + YT+P G + +SP
Sbjct: 311 GKDKIEVSEDNLKKLPLIQWCILETIRLRAPGVITRKVLK-PVKILNYTVPSGDLLMLSP 369
Query: 1557 TVNQRLKDSWVERLDFNPDRYLQDN 1631
R + E F P+R+ + N
Sbjct: 370 FWLHRNPKYFPEPDLFKPERWKKAN 394
>ref|XP_003356523.1| PREDICTED: cytochrome P450 4X1-like [Sus scrofa].
Length = 430
Score = 89.0 bits (219), Expect = 7e-18
Identities = 101/409 (24%), Positives = 167/409 (40%), Gaps = 34/409 (8%)
Frame = +3
Query: 429 LLLACAFTLIL-------VYLFRQAI-GHLAPLPAGAKSPPYIFSPIPFLGHAIAFGKSP 584
L LA F L L +YL RQ + L P P SPP + F GH
Sbjct: 14 LHLALVFCLALGLLQAVKLYLQRQRLLRDLRPFP----SPPSHW----FYGHQKIIQNGG 65
Query: 585 IEFLENAYEKYGPVFSFTMVG-KTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLTTPVFG 761
+E L +KY F F + + F ++ D A L + + N + PV G
Sbjct: 66 METLGEITDKYPRAFPFWLGPFQAFFFIYDPDYAKTLLSRPDPKSN---FLYKFMDPVVG 122
Query: 762 KGVAYDVPNPVFLEQKKMLKSGLNIAHFRQHVSIIEKETKEYFQSWGE--SGERNLFEAL 935
KG+ ++ P + + +++L GL++ + HV I+ W E L E
Sbjct: 123 KGLL-NLNGPKWFQHRRLLTPGLHLNALKSHVEIMAHSVNTMLGKWERICGTEDTLLEIS 181
Query: 936 SELIILTAS---HCLHGKEIRSQLNEKVAQLY--ADLDGGFSHAAXXXXXXXXXXSFRRR 1100
+ + +LT C+ G E Q+N A+ F+
Sbjct: 182 AHVTLLTLDIIMKCVFGLETNCQINSTYDHYIKAANESSNIIFYRLYNFLYHHDVIFKFS 241
Query: 1101 DRAHR--EIKNIFY----KAIQKRRQS-----------EEKIDDILQTLLDSTYKDGRPL 1229
+ HR +++ I + K IQ + S + K ++L L + ++G
Sbjct: 242 PKGHRLWQLRKILHPYTEKIIQAGKNSRMNENQQGNTQKRKYQNVLDIALSALAENGDSF 301
Query: 1230 TDDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQEKCYLEQKTVCGEDLPPLTYDQ 1409
+D ++ + LLAG T + W+ + LA QE+C E +++ G D +T+ Q
Sbjct: 302 SDTDLWSEVNTFLLAGHETMTGGLTWLLYHLALYPEHQERCREEIRSILG-DGSSITWGQ 360
Query: 1410 LKDLNLLDRCIKETLRLRPPIMTMMRMAKTPQTVA-GYTIPPGHQVCVS 1553
L +++ CIKE+LRL PP+++ R P T + G ++P G V S
Sbjct: 361 LGEMSYTTMCIKESLRLAPPVLSFSRELSKPITFSDGRSLPAGITVVCS 409
>ref|NP_999588.1| cytochrome P450 3A29 [Sus scrofa].
Length = 503
Score = 71.6 bits (174), Expect = 1e-12
Identities = 51/174 (29%), Positives = 86/174 (49%), Gaps = 9/174 (5%)
Frame = +3
Query: 1125 NIFYKAIQKRRQS-----EEKIDDILQTLLDS-TYKDGRP---LTDDEVAGMLIGLLLAG 1277
N F K++++ ++S +++ D+LQ +++S K+ P L+++E+ I + AG
Sbjct: 247 NFFTKSVKRMKESRLTDQQKRRVDLLQLMINSQNSKEMDPHKSLSNEELVAQGIIFIFAG 306
Query: 1278 QHTSSTTSAWMGFFLARDKTLQEKCYLEQKTVCGEDLPPLTYDQLKDLNLLDRCIKETLR 1457
T+S+ + + + LA +Q+K E + PP TYD L + LD + ETLR
Sbjct: 307 YETTSSALSLLAYELATHPDVQQKLQEEIEATFPNKAPP-TYDALAQMEYLDMVVNETLR 365
Query: 1458 LRPPIMTMMRMAKTPQTVAGYTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDRY 1619
L P + R K + G +P G V V V R D W E +F P+R+
Sbjct: 366 LYPIAARLERACKKDVEIHGVFVPKGTVVVVPVFVLHRDPDLWPEPEEFRPERF 419
>ref|XP_003125081.1| PREDICTED: cytochrome P450 26B1-like [Sus scrofa].
Length = 512
Score = 71.2 bits (173), Expect = 2e-12
Identities = 93/428 (21%), Positives = 171/428 (39%), Gaps = 22/428 (5%)
Frame = +3
Query: 408 GVNLLSSL--LLACAFTLILVYLFRQAIGHLA-----------PLPAGAKSPPYIFSPIP 548
G+ L+S+L L AC ++ L+ Q + L P+P G+ P I
Sbjct: 5 GLELVSALATLAACLVSVTLLLAVSQQLWQLRWAATRDKSCKLPIPKGSMGFPLIGET-- 62
Query: 549 FLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAED 728
GH + G F + EKYG VF ++G+ + G++ + ++ ++ E
Sbjct: 63 --GHWLLQGSG---FQSSRREKYGNVFKTHLLGRPLIRVTGAENVRKILMGEHHLVSTE- 116
Query: 729 VYSRLTTPVFGKGVAYDVPNPVFLEQKKMLKSGLNIAHFRQHVSIIEKETKEYFQSWGES 908
+ R T + G + + ++K+ + ++ I+ ++ ++W
Sbjct: 117 -WPRSTRMLLGPNTVANSIGDIHRNKRKVFSKIFSHEALESYLPKIQLVIQDTLRAWSSH 175
Query: 909 GER-NLFEALSELIILTASHCLHGKEIRSQLNEKVAQLYADLDGGFSHAAXXXXXXXXXX 1085
E N+++ +L A L G I + + ++Y F
Sbjct: 176 PEAINVYQEAQKLTFRMAIRVLLGFSIPEEDLGHLFEVYQQ----FVENVFSLPVDLPFS 231
Query: 1086 SFRRRDRAHREIKNIFYKAIQKRRQSEEKID--DILQTLLDSTYKDGRPLTDDEVAGMLI 1259
+RR RA + ++ KAI+++ Q + D D L L++S+ + G+ +T E+ +
Sbjct: 232 GYRRGIRARQILQKGLEKAIREKLQCTQGKDYSDALDILIESSKEHGKEMTMQELKDGTL 291
Query: 1260 GLLLAGQHTSSTTSAWMGFFLARDKTLQEKCYLE---QKTVCGEDLP---PLTYDQLKDL 1421
L+ A T+++ S + L + + EK E Q + P L D L L
Sbjct: 292 ELIFAAYATTASASTSLIMQLLKHPAVLEKLREELRAQGILHSGGCPCEGTLRLDTLSGL 351
Query: 1422 NLLDRCIKETLRLRPPIMTMMRMAKTPQTVAGYTIPPGHQVCVSPTVNQRLKDSWVERLD 1601
+ LD IKE +RL P+ R + G+ IP G V S + +
Sbjct: 352 HYLDCVIKEVMRLFTPVSGGYRTVLQTFELDGFQIPKGWSVMYSIRDTHDTAPVFKDVNV 411
Query: 1602 FNPDRYLQ 1625
F+PDR+ Q
Sbjct: 412 FDPDRFGQ 419
>ref|XP_003354173.1| PREDICTED: cytochrome P450 4F22-like [Sus scrofa].
Length = 531
Score = 69.3 bits (168), Expect = 6e-12
Identities = 47/154 (30%), Positives = 74/154 (48%), Gaps = 2/154 (1%)
Frame = +3
Query: 1179 DILQTLLDSTYKDGRPLTDDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQEKCYL 1358
D + LL + +DG+ L+D+++ + G T+S+ +W+ F LA+ QEKC
Sbjct: 304 DFIDVLLLARDEDGKELSDEDIRAEADTFMFEGHDTTSSGLSWVLFNLAKYPEYQEKCRE 363
Query: 1359 E-QKTVCGEDLPPLTYDQLKDLNLLDRCIKETLRLRPPI-MTMMRMAKTPQTVAGYTIPP 1532
E Q+ + G +L L +D L L CIKE+LR PP+ + R + + G IP
Sbjct: 364 EIQEVMKGRELEELEWDDLTQLPFTTMCIKESLRQFPPVTLVTRRCTEDIKLPDGRVIPK 423
Query: 1533 GHQVCVSPTVNQRLKDSWVERLDFNPDRYLQDNP 1634
G +S W + +NP R+ DNP
Sbjct: 424 GIICLISIYGIHYNPRVWPDSKVYNPYRFDPDNP 457
>ref|XP_003354175.1| PREDICTED: leukotriene-B(4) omega-hydroxylase 2-like, partial [Sus
scrofa].
Length = 308
Score = 68.6 bits (166), Expect = 1e-11
Identities = 45/163 (27%), Positives = 82/163 (50%), Gaps = 2/163 (1%)
Frame = +3
Query: 1152 RRQSEEKIDDILQTLLDSTYKDGRPLTDDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARD 1331
R +++ K D + LL + +DG+ L+D+++ + AG T+++ +W+ + LA+
Sbjct: 72 RAKAKAKTLDFIDVLLLAKDEDGKGLSDEDIRAEADTFMFAGHDTTASGLSWVLYNLAKH 131
Query: 1332 KTLQEKCYLE-QKTVCGEDLPPLTYDQLKDLNLLDRCIKETLRLRPPIMTMMR-MAKTPQ 1505
QE+C E Q+ + + + +D+L L L CIKE+LRL PP+ + R A+
Sbjct: 132 PEYQERCRQEVQELLRDREPKEIEWDELAQLPFLTMCIKESLRLHPPVPGISRCCAQDVV 191
Query: 1506 TVAGYTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDRYLQDNP 1634
G IP G+ +S W + +NP R+ ++P
Sbjct: 192 LPDGRVIPKGNICVISIFGIHHNPSVWPDPEVYNPFRFDPESP 234
>ref|XP_001928154.2| PREDICTED: cytochrome P450 26A1 [Sus scrofa].
Length = 483
Score = 67.4 bits (163), Expect = 2e-11
Identities = 82/392 (20%), Positives = 145/392 (36%), Gaps = 13/392 (3%)
Frame = +3
Query: 498 PLPAGAKSPPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSD 677
PLP G PF G + +FL+ KYG ++ + G+ ++
Sbjct: 43 PLPPGTMG-------FPFFGETLQMVLQRRKFLQMKRRKYGFIYKTHLFGRPTVRVMXXX 95
Query: 678 AAALLFNSKNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQKKMLKSGLNIAHFRQHV 857
+ + G G ++ + ++ +++ + + +V
Sbjct: 96 XXXXXXRT-----------------ILGSGCLSNLHDSSHKQRAQVIMQAFSREALQCYV 138
Query: 858 SIIEKETKEYFQSWGESGERNL--FEALSELIILTASHCLHGKEIRSQLNEKVAQ----- 1016
+I +E + W GER L + + L+ A L G E R + Q
Sbjct: 139 PVIAEEVDSCLEQWLSCGERGLLVYPQVKPLMFRIAMRILLGCEPRLASGGEAEQQLXVE 198
Query: 1017 LYADLDGGFSHAAXXXXXXXXXXSFRRRDRAHREIK-NIFYKAIQKRRQSEEK-IDDILQ 1190
+ ++ + R+ H I+ NI K R D LQ
Sbjct: 199 AFEEMTRNLFSLPIDVPFSGLYRGLKARNLIHARIEENIRAKICGLRAAGAGGGCKDALQ 258
Query: 1191 TLLDSTYKDGRPLTDDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQEKCYLEQKT 1370
L++ +++ G L + LL G T+++ + + +L + +K E K+
Sbjct: 259 LLIEHSWERGERLDMQALKQSSTELLFGGHETTASAATSLITYLGLYPHVLQKVREELKS 318
Query: 1371 ---VC-GEDLPPLTYDQLKDLNLLDRCIKETLRLRPPIMTMMRMAKTPQTVAGYTIPPGH 1538
+C G L + L+ L + IKETLRL PP+ R+A + GY IP G
Sbjct: 319 KGLLCKGNQDNKLDMEILEQLKYIGCVIKETLRLNPPVPGGFRVALKTFELNGYQIPKGW 378
Query: 1539 QVCVSPTVNQRLKDSWVERLDFNPDRYLQDNP 1634
V S + D + + +FNPDR+L +P
Sbjct: 379 NVIYSICDTHDVADIFTNKEEFNPDRFLLPHP 410
>ref|NP_001128296.1| cytochrome P450 3A46 [Sus scrofa].
Length = 503
Score = 63.9 bits (154), Expect = 2e-10
Identities = 45/182 (24%), Positives = 85/182 (46%), Gaps = 9/182 (4%)
Frame = +3
Query: 1113 REIKNIFYKAIQKRRQSEEKID-----DILQTLLDSTYKDG----RPLTDDEVAGMLIGL 1265
+ + N F ++I++ ++S K D+LQ +++S + L+++E+ +
Sbjct: 243 KSVVNFFTRSIKRMKESRLKDTQKHRVDLLQLMINSQNSKEMDAHKGLSNEELVAQGVIF 302
Query: 1266 LLAGQHTSSTTSAWMGFFLARDKTLQEKCYLEQKTVCGEDLPPLTYDQLKDLNLLDRCIK 1445
+ AG T+S++ + + + LA +Q+K E PP TYD L + LD +
Sbjct: 303 IFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKAPP-TYDGLAQMEYLDMVVN 361
Query: 1446 ETLRLRPPIMTMMRMAKTPQTVAGYTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDRYLQ 1625
E+LR+ P + R K + G +P G + V R + W E +F P+R+ +
Sbjct: 362 ESLRIFPVTPRLERSCKKDVEIHGVFVPKGTVMMVPIFALHRAPELWPEPEEFRPERFSK 421
Query: 1626 DN 1631
N
Sbjct: 422 KN 423
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 40,525,090
Number of extensions: 1082265
Number of successful extensions: 3944
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 3916
Number of HSP's successfully gapped: 32
Length of query: 546
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 442
Effective length of database: 8,754,644
Effective search space: 3869552648
Effective search space used: 3869552648
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008134
(1640 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_064394.2| lanosterol 14-alpha demethylase [Mus musculus]. 781 0.0
Alignment gi|NP_061375.1| 24-hydroxycholesterol 7-alpha-hydroxylase [Mus ... 86 7e-17
Alignment gi|NP_001003947.1| cytochrome P450, family 4, subfamily x, poly... 85 2e-16
Alignment gi|NP_031837.2| cytochrome P450 26A1 [Mus musculus]. 82 9e-16
Alignment gi|NP_001093657.1| predicted gene 9705 [Mus musculus]. 73 7e-13
Alignment gi|NP_001171184.1| cytochrome P450, family 26, subfamily b, pol... 71 2e-12
Alignment gi|NP_780684.1| cytochrome P450, family 26, subfamily b, polype... 71 2e-12
Alignment gi|NP_796281.1| cytochrome P450, family 2, subfamily E, polypep... 70 4e-12
Alignment gi|NP_001094915.1| cytochrome P450, family 4, subfamily f, poly... 70 6e-12
Alignment gi|NP_077762.1| cytochrome P450, family 4, subfamily f, polypep... 69 1e-11
>ref|NP_064394.2| lanosterol 14-alpha demethylase [Mus musculus].
Length = 503
Score = 781 bits (2017), Expect = 0.0
Identities = 385/433 (88%), Positives = 406/433 (93%)
Frame = +3
Query: 342 MVLLGLLQAGGSVLGQAMEQVTGVNLLSSLLLACAFTLILVYLFRQAIGHLAPLPAGAKS 521
MVLLGLLQ+GG VLGQAMEQVTG NLLS+LL+ACAFTL LVYLFR A+GH+ LPAGAKS
Sbjct: 1 MVLLGLLQSGGWVLGQAMEQVTGGNLLSTLLIACAFTLSLVYLFRLAVGHMVQLPAGAKS 60
Query: 522 PPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNS 701
PP+I+SPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNS
Sbjct: 61 PPHIYSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNS 120
Query: 702 KNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQKKMLKSGLNIAHFRQHVSIIEKETK 881
KNEDLNAE+VY RLTTPVFGKGVAYDVPN +FLEQKK++KSGLNIAHF+Q+V IIEKE K
Sbjct: 121 KNEDLNAEEVYGRLTTPVFGKGVAYDVPNAIFLEQKKIIKSGLNIAHFKQYVPIIEKEAK 180
Query: 882 EYFQSWGESGERNLFEALSELIILTASHCLHGKEIRSQLNEKVAQLYADLDGGFSHAAXX 1061
EYFQSWGESGERN+FEALSELIILTASHCLHGKEIRSQLNEKVAQLYADLDGGF+HAA
Sbjct: 181 EYFQSWGESGERNVFEALSELIILTASHCLHGKEIRSQLNEKVAQLYADLDGGFTHAAWL 240
Query: 1062 XXXXXXXXSFRRRDRAHREIKNIFYKAIQKRRQSEEKIDDILQTLLDSTYKDGRPLTDDE 1241
SFRRRDRAHREIKNIFYKAIQKRR S+E +DILQTLLDSTYKDGRPLTD+E
Sbjct: 241 LPAWLPLPSFRRRDRAHREIKNIFYKAIQKRRLSKEPAEDILQTLLDSTYKDGRPLTDEE 300
Query: 1242 VAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQEKCYLEQKTVCGEDLPPLTYDQLKDL 1421
++GMLIGLLLAGQHTSSTTSAWMGFFLA+DK LQEKCYLEQK VCGEDLPPLTYDQLKDL
Sbjct: 301 ISGMLIGLLLAGQHTSSTTSAWMGFFLAKDKPLQEKCYLEQKAVCGEDLPPLTYDQLKDL 360
Query: 1422 NLLDRCIKETLRLRPPIMTMMRMAKTPQTVAGYTIPPGHQVCVSPTVNQRLKDSWVERLD 1601
NLLDRCIKETLRLRPPIMTMMRMAKTPQTVAGYTIPPGHQVCVSPTVNQRLKDSW ERLD
Sbjct: 361 NLLDRCIKETLRLRPPIMTMMRMAKTPQTVAGYTIPPGHQVCVSPTVNQRLKDSWAERLD 420
Query: 1602 FNPDRYLQDNPTS 1640
FNPDRYLQDNP S
Sbjct: 421 FNPDRYLQDNPAS 433
>ref|NP_061375.1| 24-hydroxycholesterol 7-alpha-hydroxylase [Mus musculus].
Length = 470
Score = 86.3 bits (212), Expect = 7e-17
Identities = 91/383 (23%), Positives = 167/383 (43%), Gaps = 13/383 (3%)
Frame = +3
Query: 522 PPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNS 701
PP I IP++G + FGK+P+EF+E A KYGPVF+ +G T++ + +L S
Sbjct: 32 PPCIQGWIPWIGAGLEFGKAPLEFIEKARIKYGPVFTIFAMGNRMTFVSEEEGINVLLKS 91
Query: 702 KNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVF--LEQK--KMLKSGLNIAHFRQHVSIIE 869
++ D S + +PV+ +P VF L ++ ++K + + +
Sbjct: 92 EHVDFE-----SAVQSPVYHTAW---IPKNVFSALHERLYALMKGKMGTFNTHHFTGPLT 143
Query: 870 KETKEYFQSWGESGERNLFEALSELIILTASHCLHGKEIRSQLNEKVAQLYADL---DGG 1040
+E E + G G +L + + L+ + L K + + + Y D G
Sbjct: 144 EELHEQLEGLGTHGTMDLNDFVRYLLYPATLNTLFKKGLFLTDKRTIKEFYQQFKTYDEG 203
Query: 1041 FSHAAXXXXXXXXXXSFRRRDRAHREIKNIFYKAIQ--KRRQSEEKIDDILQTLLDSTYK 1214
F + + R ++ R + +F K I K S +LQ +L+
Sbjct: 204 FEYGSQLPEWL-----LRNWSKSKRWLLALFEKNIGNIKAHGSAGHSGTLLQAILEVVET 258
Query: 1215 DGRPLTDDEVAGMLIGLLLAGQHTSSTTSAW-MGFFLAR---DKTLQEKCYLEQKTVCGE 1382
+ R + + G+++ L A + + W +G+ L+ +T+ E T G+
Sbjct: 259 ETRQYSPN--YGLVV--LWAALANAPPIAFWTLGYILSHPDIHRTVLESISSVFGT-AGK 313
Query: 1383 DLPPLTYDQLKDLNLLDRCIKETLRLRPPIMTMMRMAKTPQTVAGYTIPPGHQVCVSPTV 1562
D ++ D LK L ++ CI E++RLR P + ++ K P + +T+P G + +SP
Sbjct: 314 DKIKVSEDDLKKLLIIKWCILESVRLRAPGVITRKVVK-PVKILNHTVPSGDLLMLSPFW 372
Query: 1563 NQRLKDSWVERLDFNPDRYLQDN 1631
R + E F P+R+ + N
Sbjct: 373 LHRNPKYFPEPESFKPERWKEAN 395
>ref|NP_001003947.1| cytochrome P450, family 4, subfamily x, polypeptide 1 [Mus musculus].
Length = 507
Score = 84.7 bits (208), Expect = 2e-16
Identities = 100/435 (22%), Positives = 184/435 (42%), Gaps = 34/435 (7%)
Frame = +3
Query: 429 LLLACAFTLILV-------YLFRQAI-GHLAPLPAGAKSPPYIFSPIPFLGHAIAFGKSP 584
L LA F L LV YL RQ + L+P P PP + LGH +
Sbjct: 14 LHLALVFCLALVLMQAMKLYLRRQRLLRDLSPFPG----PPAHW----LLGHQKFLQEDN 65
Query: 585 IEFLENAYEKYGPVFSFTMVG--KTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLTTPVF 758
+E L+ +K+ F VG + F Y+ D A + + + + +L TP
Sbjct: 66 METLDEIVKKHPCAFP-CWVGPFQAFFYIYDPDYAKIFLSRTDPKMQ---YLHQLLTPCI 121
Query: 759 GKGVAYDVPNPVFLEQKKMLKSGLNIAHFRQHVSIIEKETKEYFQSWGESGERN-----L 923
G+G+ ++ P + + + +L + + V + K W + +
Sbjct: 122 GRGLL-NLDGPRWFQHRCLLTPAFHQDILKPCVDTMAHSVKVMLDKWEKMWTTQETTIEV 180
Query: 924 FEALSELIILTASHCLHGKEIRSQLN---EKVAQLYADLDGGFSHAAXXXXXXXXXXSFR 1094
FE ++ + + C G+E Q+N E + +L G + F+
Sbjct: 181 FEHINLMTLDIIMKCAFGQETNCQINGTYESYVKATFEL-GEIISSRLYNFWHHHDIIFK 239
Query: 1095 RRDRAH--REIKNIFYKAIQKRRQSEEKI-------DD------ILQTLLDSTYKDGRPL 1229
+ H +E+ + ++ +K Q +KI DD L +L + +D R
Sbjct: 240 LSPKGHCFQELGKVIHQYTEKIIQDRKKILKNQVKQDDTQTSQIFLDIVLSAQAEDERAF 299
Query: 1230 TDDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQEKCYLEQKTVCGEDLPPLTYDQ 1409
+D ++ + + AG S+ + +W+ + LA + Q++C E +++ G D +T++Q
Sbjct: 300 SDADLRAEVNTFMWAGHDASAASISWLLYCLALNPEHQDRCRTEIRSILG-DGSSITWEQ 358
Query: 1410 LKDLNLLDRCIKETLRLRPPIMTMMRMAKTPQTVA-GYTIPPGHQVCVSPTVNQRLKDSW 1586
L +++ CIKETLRL PP+ ++ R P T+ G+++P G V +S W
Sbjct: 359 LDEMSYTTMCIKETLRLIPPVPSISRELSKPLTLPDGHSLPAGMTVVLSIWGLHHNPAVW 418
Query: 1587 VERLDFNPDRYLQDN 1631
+ F+P R+ ++N
Sbjct: 419 NDPKVFDPLRFTKEN 433
>ref|NP_031837.2| cytochrome P450 26A1 [Mus musculus].
Length = 497
Score = 82.4 bits (202), Expect = 9e-16
Identities = 82/391 (20%), Positives = 158/391 (40%), Gaps = 12/391 (3%)
Frame = +3
Query: 498 PLPAGAKSPPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSD 677
PLP G PF G + +FL+ KYG ++ + G+ ++G+D
Sbjct: 43 PLPPGTMG-------FPFFGETLQMVLQRRKFLQMKRRKYGFIYKTHLFGRPTVRVMGAD 95
Query: 678 AAALLFNSKNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQKKMLKSGLNIAHFRQHV 857
+ ++ ++ S T + G G ++ + ++KK++ + + +V
Sbjct: 96 NVRRILLGEHRLVSVHWPASVRT--ILGAGCLSNLHDSSHKQRKKVIMQAFSREALQCYV 153
Query: 858 SIIEKETKEYFQSWGESGERNL--FEALSELIILTASHCLHGKEIR----SQLNEKVAQL 1019
+I +E + W GER L + + L+ A L G E + +++ +
Sbjct: 154 PVIAEEVSSCLEQWLSCGERGLLVYPEVKRLMFRIAMRILLGCEPGPAGGGEDEQQLVEA 213
Query: 1020 YADLDGGFSHAAXXXXXXXXXXSFRRRDRAHREIKNIFYKAIQKRRQSEEK--IDDILQT 1193
+ ++ + R+ H I+ I++ + +E D LQ
Sbjct: 214 FEEMTRNLFSLPIDVPFSGLYRGVKARNLIHARIEENIRAKIRRLQATEPDGGCKDALQL 273
Query: 1194 LLDSTYKDGRPLTDDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQEKCYLEQKT- 1370
L++ +++ G L + LL G T+++ + + +L + +K E K+
Sbjct: 274 LIEHSWERGERLDMQALKQSSTELLFGGHETTASAATSLITYLGLYPHVLQKVREEIKSK 333
Query: 1371 --VCGEDLP-PLTYDQLKDLNLLDRCIKETLRLRPPIMTMMRMAKTPQTVAGYTIPPGHQ 1541
+C + L + L+ L IKETLRL PP+ R+A + GY IP G
Sbjct: 334 GLLCKSNQDNKLDMETLEQLKYTGCVIKETLRLNPPVPGGFRVALKTFELNGYQIPKGWN 393
Query: 1542 VCVSPTVNQRLKDSWVERLDFNPDRYLQDNP 1634
V S + D + + +FNPDR++ +P
Sbjct: 394 VIYSICDTHDVADIFTNKEEFNPDRFIVPHP 424
>ref|NP_001093657.1| predicted gene 9705 [Mus musculus].
Length = 546
Score = 72.8 bits (177), Expect = 7e-13
Identities = 80/341 (23%), Positives = 142/341 (41%), Gaps = 35/341 (10%)
Frame = +3
Query: 714 LNAEDVYSR---LTTPVFGKGVAYDVPNPVFLEQKKMLKSGLNIAHFRQHVSIIEKETKE 884
LN+ D +SR L TP F +D+ P K+ +NI H + +
Sbjct: 138 LNSGDKWSRHRRLLTPAFH----FDILKPYV----KIFNQSVNIMHAKW----------K 179
Query: 885 YFQSWGESGERNLFEALSELIILTASHCLHG----------------KEIRSQLNEKVAQ 1016
+ S G S +FE +S + + + CL G E+ S + ++ Q
Sbjct: 180 HLSSEG-SARLEMFEHISLMTLDSLQKCLFGFDSNCQESPSEYISAILELSSLVIKRSHQ 238
Query: 1017 LYADLDGGFSHAAXXXXXXXXXXSFRRRDRAHREIKNIFYKAIQKRR------------- 1157
L+ +D + H A RR +A + N I++RR
Sbjct: 239 LFLFVDFLYYHTADG----------RRFRKACDLVHNFTDAVIRERRHTLSSQNHDEFLK 288
Query: 1158 -QSEEKIDDILQTLLDSTYKDGRPLTDDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDK 1334
+++ K D + LL + + G+ L+D+++ + G T+++ +W+ + LAR
Sbjct: 289 SKTKSKTLDFIDVLLLAKDEHGKELSDEDIRAEADTFMFGGHDTTASALSWILYNLARHP 348
Query: 1335 TLQEKCYLE-QKTVCGEDLPPLTYDQLKDLNLLDRCIKETLRLRPPIMTMMRMAKTPQTV 1511
QE+C E Q+ + G + + +D L L L CIKE+LRL PP++ ++R +
Sbjct: 349 EYQERCRQEVQELLRGREPQEIEWDDLAQLPFLTMCIKESLRLHPPVIDLLRRCTRDIVL 408
Query: 1512 A-GYTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDRYLQDN 1631
G IP G+ +S W + ++P R+ +N
Sbjct: 409 PDGRVIPKGNICVISIFGIHHNPSVWPDPEVYDPFRFDPEN 449
>ref|NP_001171184.1| cytochrome P450, family 26, subfamily b, polypeptide 1 [Mus
musculus].
Length = 512
Score = 71.2 bits (173), Expect = 2e-12
Identities = 92/428 (21%), Positives = 170/428 (39%), Gaps = 22/428 (5%)
Frame = +3
Query: 408 GVNLLSSL--LLACAFTLILVYLFRQAIGHLA-----------PLPAGAKSPPYIFSPIP 548
G+ L+S+L L AC ++ L+ Q + L P+P G+ P I
Sbjct: 5 GLELVSALATLAACLVSVTLLLAVSQQLWQLRWAATRDKSCKLPIPKGSMGFPLIGET-- 62
Query: 549 FLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAED 728
GH + G F + EKYG VF ++G+ + G++ + +++ ++ E
Sbjct: 63 --GHWLLQGSG---FQSSRREKYGNVFKTHLLGRPLIRVTGAENVRKILLGEHQLVSTE- 116
Query: 729 VYSRLTTPVFGKGVAYDVPNPVFLEQKKMLKSGLNIAHFRQHVSIIEKETKEYFQSWGES 908
+ R + G + + ++K+ + ++ I+ ++ ++W
Sbjct: 117 -WPRSARVLLGPNTVANSIGDIHRNKRKVFSKIFSHEALESYLPKIQLVIQDTLRAWSSQ 175
Query: 909 GER-NLFEALSELIILTASHCLHGKEIRSQLNEKVAQLYADLDGGFSHAAXXXXXXXXXX 1085
E N+++ L A L G I + + ++Y F
Sbjct: 176 PEAINVYQEAQRLTFRMAVRVLLGFSIPEEDLGHLFEVYQQ----FVENVFSLPVDLPFS 231
Query: 1086 SFRRRDRAHREIKNIFYKAIQKRRQSEEKID--DILQTLLDSTYKDGRPLTDDEVAGMLI 1259
+RR +A + ++ KAI+++ Q + D D L L++S+ + G+ +T E+ +
Sbjct: 232 GYRRGIQARQILQKGLEKAIREKLQCTQGKDYSDALDILIESSKEHGKEMTMQELKDGTL 291
Query: 1260 GLLLAGQHTSSTTSAWMGFFLARDKTLQEKCYLE---QKTVCGEDLP---PLTYDQLKDL 1421
L+ A T+++ S + L + + EK E Q + G P L D L L
Sbjct: 292 ELIFAAYATTASASTSLIMQLLKHPAVLEKLREELRAQGLLHGGGCPCEGTLRLDTLSSL 351
Query: 1422 NLLDRCIKETLRLRPPIMTMMRMAKTPQTVAGYTIPPGHQVCVSPTVNQRLKDSWVERLD 1601
LD IKE +RL P+ R + G+ IP G V S + +
Sbjct: 352 RYLDCVIKEVMRLFTPVSGGYRTVLQTFELDGFQIPKGWSVMYSIRDTHDTAPVFKDVNV 411
Query: 1602 FNPDRYLQ 1625
F+PDR+ Q
Sbjct: 412 FDPDRFSQ 419
>ref|NP_780684.1| cytochrome P450, family 26, subfamily b, polypeptide 1 [Mus
musculus].
Length = 512
Score = 71.2 bits (173), Expect = 2e-12
Identities = 92/428 (21%), Positives = 170/428 (39%), Gaps = 22/428 (5%)
Frame = +3
Query: 408 GVNLLSSL--LLACAFTLILVYLFRQAIGHLA-----------PLPAGAKSPPYIFSPIP 548
G+ L+S+L L AC ++ L+ Q + L P+P G+ P I
Sbjct: 5 GLELVSALATLAACLVSVTLLLAVSQQLWQLRWAATRDKSCKLPIPKGSMGFPLIGET-- 62
Query: 549 FLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAED 728
GH + G F + EKYG VF ++G+ + G++ + +++ ++ E
Sbjct: 63 --GHWLLQGSG---FQSSRREKYGNVFKTHLLGRPLIRVTGAENVRKILLGEHQLVSTE- 116
Query: 729 VYSRLTTPVFGKGVAYDVPNPVFLEQKKMLKSGLNIAHFRQHVSIIEKETKEYFQSWGES 908
+ R + G + + ++K+ + ++ I+ ++ ++W
Sbjct: 117 -WPRSARVLLGPNTVANSIGDIHRNKRKVFSKIFSHEALESYLPKIQLVIQDTLRAWSSQ 175
Query: 909 GER-NLFEALSELIILTASHCLHGKEIRSQLNEKVAQLYADLDGGFSHAAXXXXXXXXXX 1085
E N+++ L A L G I + + ++Y F
Sbjct: 176 PEAINVYQEAQRLTFRMAVRVLLGFSIPEEDLGHLFEVYQQ----FVENVFSLPVDLPFS 231
Query: 1086 SFRRRDRAHREIKNIFYKAIQKRRQSEEKID--DILQTLLDSTYKDGRPLTDDEVAGMLI 1259
+RR +A + ++ KAI+++ Q + D D L L++S+ + G+ +T E+ +
Sbjct: 232 GYRRGIQARQILQKGLEKAIREKLQCTQGKDYSDALDILIESSKEHGKEMTMQELKDGTL 291
Query: 1260 GLLLAGQHTSSTTSAWMGFFLARDKTLQEKCYLE---QKTVCGEDLP---PLTYDQLKDL 1421
L+ A T+++ S + L + + EK E Q + G P L D L L
Sbjct: 292 ELIFAAYATTASASTSLIMQLLKHPAVLEKLREELRAQGLLHGGGCPCEGTLRLDTLSSL 351
Query: 1422 NLLDRCIKETLRLRPPIMTMMRMAKTPQTVAGYTIPPGHQVCVSPTVNQRLKDSWVERLD 1601
LD IKE +RL P+ R + G+ IP G V S + +
Sbjct: 352 RYLDCVIKEVMRLFTPVSGGYRTVLQTFELDGFQIPKGWSVMYSIRDTHDTAPVFKDVNV 411
Query: 1602 FNPDRYLQ 1625
F+PDR+ Q
Sbjct: 412 FDPDRFSQ 419
>ref|NP_796281.1| cytochrome P450, family 2, subfamily E, polypeptide 2 homolog [Mus
musculus].
Length = 532
Score = 70.5 bits (171), Expect = 4e-12
Identities = 56/196 (28%), Positives = 88/196 (44%), Gaps = 15/196 (7%)
Frame = +3
Query: 1092 RRRDRAHREIKNIFYKAIQKRRQS-------------EEKIDDILQTLLDSTYKDGRPLT 1232
RR +A + N + IQ+RRQ+ + K D + LL + ++G+ L+
Sbjct: 263 RRFRQACDTVHNFTTEVIQERRQALRQQGAEAWLKAKQGKTLDFIDVLLLAKDEEGKELS 322
Query: 1233 DDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQEKCYLE-QKTVCGEDLPPLTYDQ 1409
D+++ + G T+S+ +W F LA+ QEKC E Q+ + G +L L +D
Sbjct: 323 DEDIRAEADTFMFEGHDTTSSGLSWALFNLAKYPEYQEKCREEIQEVMKGRELEELDWDD 382
Query: 1410 LKDLNLLDRCIKETLRLRPPI-MTMMRMAKTPQTVAGYTIPPGHQVCVSPTVNQRLKDSW 1586
L L CIKE+LR PP+ + R + + G IP G VS W
Sbjct: 383 LTQLPFTTMCIKESLRQFPPVTLISRRCTEDIKLPDGRVIPKGIICLVSIYGTHHNPIVW 442
Query: 1587 VERLDFNPDRYLQDNP 1634
+ +NP R+ D P
Sbjct: 443 PDSKVYNPYRFDPDTP 458
>ref|NP_001094915.1| cytochrome P450, family 4, subfamily f, polypeptide 17 [Mus
musculus].
Length = 524
Score = 69.7 bits (169), Expect = 6e-12
Identities = 43/163 (26%), Positives = 79/163 (48%), Gaps = 2/163 (1%)
Frame = +3
Query: 1152 RRQSEEKIDDILQTLLDSTYKDGRPLTDDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARD 1331
+ +++ K D + LL + + G+ L+D+++ + G T+++ +W+ + LAR
Sbjct: 288 KSKTKSKTLDFIDVLLLAKDEHGKELSDEDIRAEADTFMFGGHDTTASALSWILYNLARH 347
Query: 1332 KTLQEKCYLE-QKTVCGEDLPPLTYDQLKDLNLLDRCIKETLRLRPPIMTMMRMAKTPQT 1508
QE+C E Q+ + G + + +D L L L CIKE+LRL PP+ + R
Sbjct: 348 PEYQERCRQEVQELLRGREPQEIEWDDLAQLPFLTMCIKESLRLHPPVTVISRCCTQDVV 407
Query: 1509 VA-GYTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDRYLQDNP 1634
+ G IP G +S + W + ++P R+ +NP
Sbjct: 408 LPDGRVIPKGTDCVISIFGVHHNPEVWPDPEVYDPFRFDPENP 450
>ref|NP_077762.1| cytochrome P450, family 4, subfamily f, polypeptide 16 [Mus
musculus].
Length = 524
Score = 68.9 bits (167), Expect = 1e-11
Identities = 69/296 (23%), Positives = 126/296 (42%), Gaps = 32/296 (10%)
Frame = +3
Query: 843 FRQHVSIIEKETKEYFQSWGESGERNLFEALSELIILTASHCLHG--------------- 977
F Q V+I+ + K + S G S +FE +S + + + CL G
Sbjct: 167 FNQSVNIMHAKWK-HLSSEG-SARLEMFEHISLMTLDSLQKCLFGFDSNCQESPSEYISA 224
Query: 978 -KEIRSQLNEKVAQLYADLDGGFSHAAXXXXXXXXXXSFRRRDRAHREIKNIFYKAIQKR 1154
E+ S + ++ QL+ +D + H A RR +A + N I++R
Sbjct: 225 ILELSSLIIKRSLQLFLFVDFLYYHTADG----------RRFRKACDLVHNFTDAVIRER 274
Query: 1155 R--------------QSEEKIDDILQTLLDSTYKDGRPLTDDEVAGMLIGLLLAGQHTSS 1292
R +++ K D + LL + + G+ L+D+++ + G T++
Sbjct: 275 RHTLSSQNHDEFLKSKTKSKTLDFIDVLLLAKDEHGKELSDEDIRAEADTFMFGGHDTTA 334
Query: 1293 TTSAWMGFFLARDKTLQEKCYLE-QKTVCGEDLPPLTYDQLKDLNLLDRCIKETLRLRPP 1469
+ +W+ + LAR QE+C E Q+ + + + +D L L L CIKE+LRL P
Sbjct: 335 SALSWILYNLARHPEYQERCRQEVQELLRDREPEEIEWDDLAQLPFLTMCIKESLRLHSP 394
Query: 1470 IMTMMRMAKTPQTVA-GYTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDRYLQDNP 1634
++ ++R + G IP G+ +S W + ++P R+ +NP
Sbjct: 395 VIDLLRRCTRDIVLPDGRVIPKGNICVISIFGIHHNPSVWPDPEVYDPFRFDPENP 450
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 54,846,509
Number of extensions: 1443503
Number of successful extensions: 4993
Number of sequences better than 1.0e-05: 51
Number of HSP's gapped: 4950
Number of HSP's successfully gapped: 51
Length of query: 546
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 440
Effective length of database: 12,433,743
Effective search space: 5470846920
Effective search space used: 5470846920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008134
(1640 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000777.1| lanosterol 14-alpha demethylase isoform 1 [Homo... 808 0.0
Alignment gi|NP_001139624.1| lanosterol 14-alpha demethylase isoform 2 [H... 633 0.0
Alignment gi|NP_828847.1| cytochrome P450 4X1 [Homo sapiens]. 93 8e-19
Alignment gi|NP_057677.2| 24-hydroxycholesterol 7-alpha-hydroxylase [Homo... 90 7e-18
Alignment gi|NP_000774.2| cytochrome P450 26A1 isoform 1 [Homo sapiens]. 82 1e-15
Alignment gi|NP_775754.2| cytochrome P450 4F22 [Homo sapiens]. 75 2e-13
Alignment gi|NP_476498.1| cytochrome P450 26A1 isoform 2 [Homo sapiens]. 74 4e-13
Alignment gi|NP_059488.2| cytochrome P450 3A4 isoform 1 [Homo sapiens]. 72 1e-12
Alignment gi|NP_001189784.1| cytochrome P450 3A4 isoform 2 [Homo sapiens]. 72 1e-12
Alignment gi|NP_076433.3| cytochrome P450 4F12 [Homo sapiens]. 72 1e-12
>ref|NP_000777.1| lanosterol 14-alpha demethylase isoform 1 [Homo sapiens].
Length = 509
Score = 808 bits (2087), Expect = 0.0
Identities = 402/436 (92%), Positives = 415/436 (95%)
Frame = +3
Query: 333 AAGMVLLGLLQAGGSVLGQAMEQVTGVNLLSSLLLACAFTLILVYLFRQAIGHLAPLPAG 512
AAGM+LLGLLQAGGSVLGQAME+VTG NLLS LL+ACAFTL LVYL R A GHL LPAG
Sbjct: 4 AAGMLLLGLLQAGGSVLGQAMEKVTGGNLLSMLLIACAFTLSLVYLIRLAAGHLVQLPAG 63
Query: 513 AKSPPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALL 692
KSPPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALL
Sbjct: 64 VKSPPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALL 123
Query: 693 FNSKNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQKKMLKSGLNIAHFRQHVSIIEK 872
FNSKNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQKKMLKSGLNIAHF+QHVSIIEK
Sbjct: 124 FNSKNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQKKMLKSGLNIAHFKQHVSIIEK 183
Query: 873 ETKEYFQSWGESGERNLFEALSELIILTASHCLHGKEIRSQLNEKVAQLYADLDGGFSHA 1052
ETKEYF+SWGESGE+N+FEALSELIILTASHCLHGKEIRSQLNEKVAQLYADLDGGFSHA
Sbjct: 184 ETKEYFESWGESGEKNVFEALSELIILTASHCLHGKEIRSQLNEKVAQLYADLDGGFSHA 243
Query: 1053 AXXXXXXXXXXSFRRRDRAHREIKNIFYKAIQKRRQSEEKIDDILQTLLDSTYKDGRPLT 1232
A SFRRRDRAHREIK+IFYKAIQKRRQS+EKIDDILQTLLD+TYKDGRPLT
Sbjct: 244 AWLLPGWLPLPSFRRRDRAHREIKDIFYKAIQKRRQSQEKIDDILQTLLDATYKDGRPLT 303
Query: 1233 DDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQEKCYLEQKTVCGEDLPPLTYDQL 1412
DDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQ+KCYLEQKTVCGE+LPPLTYDQL
Sbjct: 304 DDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQKKCYLEQKTVCGENLPPLTYDQL 363
Query: 1413 KDLNLLDRCIKETLRLRPPIMTMMRMAKTPQTVAGYTIPPGHQVCVSPTVNQRLKDSWVE 1592
KDLNLLDRCIKETLRLRPPIM MMRMA+TPQTVAGYTIPPGHQVCVSPTVNQRLKDSWVE
Sbjct: 364 KDLNLLDRCIKETLRLRPPIMIMMRMARTPQTVAGYTIPPGHQVCVSPTVNQRLKDSWVE 423
Query: 1593 RLDFNPDRYLQDNPTS 1640
RLDFNPDRYLQDNP S
Sbjct: 424 RLDFNPDRYLQDNPAS 439
>ref|NP_001139624.1| lanosterol 14-alpha demethylase isoform 2 [Homo sapiens].
Length = 404
Score = 633 bits (1632), Expect = 0.0
Identities = 312/334 (93%), Positives = 322/334 (96%)
Frame = +3
Query: 639 MVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQKKML 818
MVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQKKML
Sbjct: 1 MVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQKKML 60
Query: 819 KSGLNIAHFRQHVSIIEKETKEYFQSWGESGERNLFEALSELIILTASHCLHGKEIRSQL 998
KSGLNIAHF+QHVSIIEKETKEYF+SWGESGE+N+FEALSELIILTASHCLHGKEIRSQL
Sbjct: 61 KSGLNIAHFKQHVSIIEKETKEYFESWGESGEKNVFEALSELIILTASHCLHGKEIRSQL 120
Query: 999 NEKVAQLYADLDGGFSHAAXXXXXXXXXXSFRRRDRAHREIKNIFYKAIQKRRQSEEKID 1178
NEKVAQLYADLDGGFSHAA SFRRRDRAHREIK+IFYKAIQKRRQS+EKID
Sbjct: 121 NEKVAQLYADLDGGFSHAAWLLPGWLPLPSFRRRDRAHREIKDIFYKAIQKRRQSQEKID 180
Query: 1179 DILQTLLDSTYKDGRPLTDDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQEKCYL 1358
DILQTLLD+TYKDGRPLTDDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQ+KCYL
Sbjct: 181 DILQTLLDATYKDGRPLTDDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQKKCYL 240
Query: 1359 EQKTVCGEDLPPLTYDQLKDLNLLDRCIKETLRLRPPIMTMMRMAKTPQTVAGYTIPPGH 1538
EQKTVCGE+LPPLTYDQLKDLNLLDRCIKETLRLRPPIM MMRMA+TPQTVAGYTIPPGH
Sbjct: 241 EQKTVCGENLPPLTYDQLKDLNLLDRCIKETLRLRPPIMIMMRMARTPQTVAGYTIPPGH 300
Query: 1539 QVCVSPTVNQRLKDSWVERLDFNPDRYLQDNPTS 1640
QVCVSPTVNQRLKDSWVERLDFNPDRYLQDNP S
Sbjct: 301 QVCVSPTVNQRLKDSWVERLDFNPDRYLQDNPAS 334
>ref|NP_828847.1| cytochrome P450 4X1 [Homo sapiens].
Length = 509
Score = 92.8 bits (229), Expect = 8e-19
Identities = 99/420 (23%), Positives = 169/420 (40%), Gaps = 28/420 (6%)
Frame = +3
Query: 456 ILVYLFRQAI-GHLAPLPAGAKSPPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFS 632
I +YL RQ + L P PA PP + FLGH +E LE EKY F
Sbjct: 30 IKLYLRRQRLLRDLRPFPA----PPTHW----FLGHQKFIQDDNMEKLEEIIEKYPRAFP 81
Query: 633 FTMVG--KTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQ 806
F +G + F + D A L + + + + P+ GKG+A + P + +
Sbjct: 82 F-WIGPFQAFFCIYDPDYAKTLLSRTDP---KSQYLQKFSPPLLGKGLA-ALDGPKWFQH 136
Query: 807 KKMLKSGLNIAHFRQHVSIIEKETKEYFQSW-----GESGERNLFEALSELIILTASHCL 971
+++L G + + ++ ++ K W + ++E ++ + + C
Sbjct: 137 RRLLTPGFHFNILKAYIEVMAHSVKMMLDKWEKICSTQDTSVEVYEHINSMSLDIIMKCA 196
Query: 972 HGKEIRSQLN-----------EKVAQLYADLDGGFSHAAXXXXXXXXXXSFRR------- 1097
KE Q N E ++ L H+ F++
Sbjct: 197 FSKETNCQTNSTHDPYAKAIFELSKIIFHRLYSLLYHSDIIFKLSPQGYRFQKLSRVLNQ 256
Query: 1098 -RDRAHREIKNIFYKAIQKRRQSEEKIDDILQTLLDSTYKDGRPLTDDEVAGMLIGLLLA 1274
D +E K +++ + K D L +L + + G +D +V + LLA
Sbjct: 257 YTDTIIQERKKSLQAGVKQDNTPKRKYQDFLDIVLSAKDESGSSFSDIDVHSEVSTFLLA 316
Query: 1275 GQHTSSTTSAWMGFFLARDKTLQEKCYLEQKTVCGEDLPPLTYDQLKDLNLLDRCIKETL 1454
G T + + +W+ + LA + QE+C E + + G D +T+DQL +++ CIKET
Sbjct: 317 GHDTLAASISWILYCLALNPEHQERCREEVRGILG-DGSSITWDQLGEMSYTTMCIKETC 375
Query: 1455 RLRPPIMTMMRMAKTPQTVA-GYTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDRYLQDN 1631
RL P + ++ R P T G T+P G V +S W F+P R+ Q+N
Sbjct: 376 RLIPAVPSISRDLSKPLTFPDGCTLPAGITVVLSIWGLHHNPAVWKNPKVFDPLRFSQEN 435
>ref|NP_057677.2| 24-hydroxycholesterol 7-alpha-hydroxylase [Homo sapiens].
Length = 469
Score = 89.7 bits (221), Expect = 7e-18
Identities = 91/387 (23%), Positives = 163/387 (42%), Gaps = 15/387 (3%)
Frame = +3
Query: 516 KSPPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLF 695
+ PP I IP++G FGK+P+EF+E A KYGP+F+ +G T++ + +
Sbjct: 27 RRPPCIKGWIPWIGVGFEFGKAPLEFIEKARIKYGPIFTVFAMGNRMTFVTEEEGINVFL 86
Query: 696 NSKNED--LNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQKK----MLKSGLNIAHFRQHV 857
SK D L +++ R + +P VFL + MLK + + Q
Sbjct: 87 KSKKVDFELAVQNIVYRTAS----------IPKNVFLALHEKLYIMLKGKMGTVNLHQFT 136
Query: 858 SIIEKETKEYFQSWGESGERNLFEALSELIILTASHCLHGKEIRSQLNEKVA---QLYAD 1028
+ +E E ++ G G +L + L+ + L K + S +K+ Q +
Sbjct: 137 GQLTEELHEQLENLGTHGTMDLNNLVRHLLYPVTVNMLFNKSLFSTNKKKIKEFHQYFQV 196
Query: 1029 LDGGFSHAAXXXXXXXXXXSFRRRDRAHREIKNIFYKAIQKRRQSEEKIDDILQTLLDST 1208
D F + + R ++ + +F K I + + D+ + TLL +T
Sbjct: 197 YDEDFEYGSQLPECL-----LRNWSKSKKWFLELFEKNIPDIKACKSAKDNSM-TLLQAT 250
Query: 1209 YKDGRPLTDDEVA---GMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQEKCYLEQKTV-- 1373
T E + G+L LL A + + W ++ + + +V
Sbjct: 251 LDIVETETSKENSPNYGLL--LLWASLSNAVPVAFWTLAYVLSHPDIHKAIMEGISSVFG 308
Query: 1374 -CGEDLPPLTYDQLKDLNLLDRCIKETLRLRPPIMTMMRMAKTPQTVAGYTIPPGHQVCV 1550
G+D ++ D L++L L+ C+ ET+RL+ P + ++ K P + Y IP G + +
Sbjct: 309 KAGKDKIKVSEDDLENLLLIKWCVLETIRLKAPGVITRKVVK-PVEILNYIIPSGDLLML 367
Query: 1551 SPTVNQRLKDSWVERLDFNPDRYLQDN 1631
SP R + E F P+R+ + N
Sbjct: 368 SPFWLHRNPKYFPEPELFKPERWKKAN 394
>ref|NP_000774.2| cytochrome P450 26A1 isoform 1 [Homo sapiens].
Length = 497
Score = 82.4 bits (202), Expect = 1e-15
Identities = 83/391 (21%), Positives = 157/391 (40%), Gaps = 12/391 (3%)
Frame = +3
Query: 498 PLPAGAKSPPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSD 677
PLP G PF G + +FL+ KYG ++ + G+ ++G+D
Sbjct: 43 PLPPGTMG-------FPFFGETLQMVLQRRKFLQMKRRKYGFIYKTHLFGRPTVRVMGAD 95
Query: 678 AAALLFNSKNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQKKMLKSGLNIAHFRQHV 857
+ ++ ++ S T + G G ++ + ++KK++ + +V
Sbjct: 96 NVRRILLGEHRLVSVHWPASVRT--ILGSGCLSNLHDSSHKQRKKVIMRAFSREALECYV 153
Query: 858 SIIEKETKEYFQSWGESGERNL--FEALSELIILTASHCLHGKEIR----SQLNEKVAQL 1019
+I +E + W GER L + + L+ A L G E + +++ +
Sbjct: 154 PVITEEVGSSLEQWLSCGERGLLVYPEVKRLMFRIAMRILLGCEPQLAGDGDSEQQLVEA 213
Query: 1020 YADLDGGFSHAAXXXXXXXXXXSFRRRDRAHREIKNIFYKAIQKRRQSE--EKIDDILQT 1193
+ ++ + R+ H I+ I R SE + D LQ
Sbjct: 214 FEEMTRNLFSLPIDVPFSGLYRGMKARNLIHARIEQNIRAKICGLRASEAGQGCKDALQL 273
Query: 1194 LLDSTYKDGRPLTDDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQEKCYLEQKT- 1370
L++ +++ G L + LL G T+++ + + +L + +K E K+
Sbjct: 274 LIEHSWERGERLDMQALKQSSTELLFGGHETTASAATSLITYLGLYPHVLQKVREELKSK 333
Query: 1371 --VCGEDLP-PLTYDQLKDLNLLDRCIKETLRLRPPIMTMMRMAKTPQTVAGYTIPPGHQ 1541
+C + L + L+ L + IKETLRL PP+ R+A + GY IP G
Sbjct: 334 GLLCKSNQDNKLDMEILEQLKYIGCVIKETLRLNPPVPGGFRVALKTFELNGYQIPKGWN 393
Query: 1542 VCVSPTVNQRLKDSWVERLDFNPDRYLQDNP 1634
V S + + + + +FNPDR++ +P
Sbjct: 394 VIYSICDTHDVAEIFTNKEEFNPDRFMLPHP 424
>ref|NP_775754.2| cytochrome P450 4F22 [Homo sapiens].
Length = 531
Score = 74.7 bits (182), Expect = 2e-13
Identities = 63/221 (28%), Positives = 95/221 (42%), Gaps = 38/221 (17%)
Frame = +3
Query: 1086 SFRRRDRAHREIKNIFYKA--------------------IQKRRQS-------------E 1166
S RR+ R H + I+Y++ IQ+RR++ +
Sbjct: 240 SVRRQYRLHHYLDFIYYRSADGRRFRQACDMVHHFTTEVIQERRRALRQQGAEAWLKAKQ 299
Query: 1167 EKIDDILQTLLDSTYKDGRPLTDDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQE 1346
K D + LL + +DG+ L+D+++ + G T+S+ +WM F LA+ QE
Sbjct: 300 GKTLDFIDVLLLARDEDGKELSDEDIRAEADTFMFEGHDTTSSGISWMLFNLAKYPEYQE 359
Query: 1347 KCYLE-QKTVCGEDLPPLTYDQLKDLNLLDRCIKETLRLRPPIMTMMRMA----KTPQTV 1511
KC E Q+ + G +L L +D L L CIKE+LR PP+ + R K P
Sbjct: 360 KCREEIQEVMKGRELEELEWDDLTQLPFTTMCIKESLRQYPPVTLVSRQCTEDIKLPD-- 417
Query: 1512 AGYTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDRYLQDNP 1634
G IP G VS W + +NP R+ DNP
Sbjct: 418 -GRIIPKGIICLVSIYGTHHNPTVWPDSKVYNPYRFDPDNP 457
>ref|NP_476498.1| cytochrome P450 26A1 isoform 2 [Homo sapiens].
Length = 428
Score = 73.9 bits (180), Expect = 4e-13
Identities = 74/353 (20%), Positives = 145/353 (41%), Gaps = 12/353 (3%)
Frame = +3
Query: 612 KYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLTTPVFGKGVAYDVPNP 791
KYG ++ + G+ ++G+D + ++ ++ S T + G G ++ +
Sbjct: 5 KYGFIYKTHLFGRPTVRVMGADNVRRILLGEHRLVSVHWPASVRT--ILGSGCLSNLHDS 62
Query: 792 VFLEQKKMLKSGLNIAHFRQHVSIIEKETKEYFQSWGESGERNL--FEALSELIILTASH 965
++KK++ + +V +I +E + W GER L + + L+ A
Sbjct: 63 SHKQRKKVIMRAFSREALECYVPVITEEVGSSLEQWLSCGERGLLVYPEVKRLMFRIAMR 122
Query: 966 CLHGKEIR----SQLNEKVAQLYADLDGGFSHAAXXXXXXXXXXSFRRRDRAHREIKNIF 1133
L G E + +++ + + ++ + R+ H I+
Sbjct: 123 ILLGCEPQLAGDGDSEQQLVEAFEEMTRNLFSLPIDVPFSGLYRGMKARNLIHARIEQNI 182
Query: 1134 YKAIQKRRQSE--EKIDDILQTLLDSTYKDGRPLTDDEVAGMLIGLLLAGQHTSSTTSAW 1307
I R SE + D LQ L++ +++ G L + LL G T+++ +
Sbjct: 183 RAKICGLRASEAGQGCKDALQLLIEHSWERGERLDMQALKQSSTELLFGGHETTASAATS 242
Query: 1308 MGFFLARDKTLQEKCYLEQKT---VCGEDLP-PLTYDQLKDLNLLDRCIKETLRLRPPIM 1475
+ +L + +K E K+ +C + L + L+ L + IKETLRL PP+
Sbjct: 243 LITYLGLYPHVLQKVREELKSKGLLCKSNQDNKLDMEILEQLKYIGCVIKETLRLNPPVP 302
Query: 1476 TMMRMAKTPQTVAGYTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDRYLQDNP 1634
R+A + GY IP G V S + + + + +FNPDR++ +P
Sbjct: 303 GGFRVALKTFELNGYQIPKGWNVIYSICDTHDVAEIFTNKEEFNPDRFMLPHP 355
>ref|NP_059488.2| cytochrome P450 3A4 isoform 1 [Homo sapiens].
Length = 503
Score = 72.4 bits (176), Expect = 1e-12
Identities = 52/182 (28%), Positives = 86/182 (47%), Gaps = 9/182 (4%)
Frame = +3
Query: 1113 REIKNIFYKAIQKRRQS-----EEKIDDILQTLLDSTY----KDGRPLTDDEVAGMLIGL 1265
RE+ N K++++ ++S ++ D LQ ++DS + + L+D E+ I
Sbjct: 243 REVTNFLRKSVKRMKESRLEDTQKHRVDFLQLMIDSQNSKETESHKALSDLELVAQSIIF 302
Query: 1266 LLAGQHTSSTTSAWMGFFLARDKTLQEKCYLEQKTVCGEDLPPLTYDQLKDLNLLDRCIK 1445
+ AG T+S+ +++ + LA +Q+K E V PP TYD + + LD +
Sbjct: 303 IFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKAPP-TYDTVLQMEYLDMVVN 361
Query: 1446 ETLRLRPPIMTMMRMAKTPQTVAGYTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDRYLQ 1625
ETLRL P M + R+ K + G IP G V + R W E F P+R+ +
Sbjct: 362 ETLRLFPIAMRLERVCKKDVEINGMFIPKGVVVMIPSYALHRDPKYWTEPEKFLPERFSK 421
Query: 1626 DN 1631
N
Sbjct: 422 KN 423
>ref|NP_001189784.1| cytochrome P450 3A4 isoform 2 [Homo sapiens].
Length = 502
Score = 72.4 bits (176), Expect = 1e-12
Identities = 52/182 (28%), Positives = 86/182 (47%), Gaps = 9/182 (4%)
Frame = +3
Query: 1113 REIKNIFYKAIQKRRQS-----EEKIDDILQTLLDSTY----KDGRPLTDDEVAGMLIGL 1265
RE+ N K++++ ++S ++ D LQ ++DS + + L+D E+ I
Sbjct: 242 REVTNFLRKSVKRMKESRLEDTQKHRVDFLQLMIDSQNSKETESHKALSDLELVAQSIIF 301
Query: 1266 LLAGQHTSSTTSAWMGFFLARDKTLQEKCYLEQKTVCGEDLPPLTYDQLKDLNLLDRCIK 1445
+ AG T+S+ +++ + LA +Q+K E V PP TYD + + LD +
Sbjct: 302 IFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKAPP-TYDTVLQMEYLDMVVN 360
Query: 1446 ETLRLRPPIMTMMRMAKTPQTVAGYTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDRYLQ 1625
ETLRL P M + R+ K + G IP G V + R W E F P+R+ +
Sbjct: 361 ETLRLFPIAMRLERVCKKDVEINGMFIPKGVVVMIPSYALHRDPKYWTEPEKFLPERFSK 420
Query: 1626 DN 1631
N
Sbjct: 421 KN 422
>ref|NP_076433.3| cytochrome P450 4F12 [Homo sapiens].
Length = 524
Score = 72.0 bits (175), Expect = 1e-12
Identities = 74/353 (20%), Positives = 140/353 (39%), Gaps = 27/353 (7%)
Frame = +3
Query: 654 FTYLLGSDAAALLFNSKNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQKKMLKSGLN 833
F L D + N+ ++++ R P G+G+ + + ++ML +
Sbjct: 98 FIVLCHPDTIRSITNASAAIAPKDNLFIRFLKPWLGEGILLSGGDK-WSRHRRMLTPAFH 156
Query: 834 IAHFRQHVSIIEKETKEYFQSWGE-----SGERNLFEALSELIILTASHCL-----HGKE 983
+ +++I K W S ++FE +S + + + C+ H +E
Sbjct: 157 FNILKSYITIFNKSANIMLDKWQHLASEGSSRLDMFEHISLMTLDSLQKCIFSFDSHCQE 216
Query: 984 IRSQLNEKVAQLYADLDGGFSHAAXXXXXXXXXXSFRRR-DRAHREIKNIFYKAIQKRRQ 1160
S+ + +L A ++ H RR RA R + + I++RR+
Sbjct: 217 RPSEYIATILELSALVEKRSQHILQHMDFLYYLSHDGRRFHRACRLVHDFTDAVIRERRR 276
Query: 1161 S--------------EEKIDDILQTLLDSTYKDGRPLTDDEVAGMLIGLLLAGQHTSSTT 1298
+ + K D + LL S +DG+ L+D+++ + G T+++
Sbjct: 277 TLPTQGIDDFFKDKAKSKTLDFIDVLLLSKDEDGKALSDEDIRAEADTFMFGGHDTTASG 336
Query: 1299 SAWMGFFLARDKTLQEKCYLE-QKTVCGEDLPPLTYDQLKDLNLLDRCIKETLRLRPPIM 1475
+W+ + LAR QE+C E Q+ + D + +D L L L C+KE+LRL PP
Sbjct: 337 LSWVLYNLARHPEYQERCRQEVQELLKDRDPKEIEWDDLAQLPFLTMCVKESLRLHPPAP 396
Query: 1476 TMMRMAKTPQTVA-GYTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDRYLQDN 1631
+ R + G IP G + W + ++P R+ +N
Sbjct: 397 FISRCCTQDIVLPDGRVIPKGITCLIDIIGVHHNPTVWPDPEVYDPFRFDPEN 449
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 64,518,538
Number of extensions: 1712409
Number of successful extensions: 5735
Number of sequences better than 1.0e-05: 42
Number of HSP's gapped: 5698
Number of HSP's successfully gapped: 42
Length of query: 546
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 438
Effective length of database: 14,737,052
Effective search space: 6454828776
Effective search space used: 6454828776
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008134
(1640 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 1021 0.0
gb|GL892330.2| Sus scrofa unplaced genomic scaffold ChrUScaf217 593 e-166
gb|GL892553.2| Sus scrofa unplaced genomic scaffold ChrUScaf439 100 5e-18
>Sscrofa_Chr09
|| Length = 153670197
Score = 1021 bits (515), Expect = 0.0
Identities = 515/515 (100%)
Strand = Plus / Minus
Query: 1 atctcctcttaggccacattctggtctgtctctgtaccacccgtgcgacaggtgcagcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78814856 atctcctcttaggccacattctggtctgtctctgtaccacccgtgcgacaggtgcagcat 78814797
Query: 61 tattcttcaggtcctctctcctgcgtaaggagatgaccgcggcacgaagtacaatttatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78814796 tattcttcaggtcctctctcctgcgtaaggagatgaccgcggcacgaagtacaatttatg 78814737
Query: 121 gggcgtgggcataggaagcccctcccactcctgtgacgtacagggtggtgcgtgagggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78814736 gggcgtgggcataggaagcccctcccactcctgtgacgtacagggtggtgcgtgagggag 78814677
Query: 181 ccggcagtagggggtgcggctgggttcagcagggggcttgcgggccggcgccgctttccg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78814676 ccggcagtagggggtgcggctgggttcagcagggggcttgcgggccggcgccgctttccg 78814617
Query: 241 acgcccatctgctggctagtctccctcagtggtttcggaggagccgcggcgacctcggcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78814616 acgcccatctgctggctagtctccctcagtggtttcggaggagccgcggcgacctcggcc 78814557
Query: 301 tccagaatccccagcaaactgacgtgagggtggcggccgggatggtgttgctgggcttac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78814556 tccagaatccccagcaaactgacgtgagggtggcggccgggatggtgttgctgggcttac 78814497
Query: 361 tgcaagctggggggtcggtgcttgggcaggcgatggagcaggtaactggcgtcaatctcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78814496 tgcaagctggggggtcggtgcttgggcaggcgatggagcaggtaactggcgtcaatctcc 78814437
Query: 421 tatccagtctgctcctcgcctgcgccttcacgctcatcttagtttacctgttccgccaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78814436 tatccagtctgctcctcgcctgcgccttcacgctcatcttagtttacctgttccgccaag 78814377
Query: 481 ccatcggccacctggccccactgccggctggagcg 515
|||||||||||||||||||||||||||||||||||
Sbjct: 78814376 ccatcggccacctggccccactgccggctggagcg 78814342
Score = 389 bits (196), Expect = e-105
Identities = 196/196 (100%)
Strand = Plus / Minus
Query: 1214 ggatgggcgtcctttgacagatgatgaagtagccggcatgcttattggactgctcttggc 1273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78801179 ggatgggcgtcctttgacagatgatgaagtagccggcatgcttattggactgctcttggc 78801120
Query: 1274 ggggcagcacacatcctcaactaccagtgcctggatgggcttctttttggccagagacaa 1333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78801119 ggggcagcacacatcctcaactaccagtgcctggatgggcttctttttggccagagacaa 78801060
Query: 1334 aacacttcaagaaaaatgttatttggaacagaaaacagtttgtggagaggatctgccacc 1393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78801059 aacacttcaagaaaaatgttatttggaacagaaaacagtttgtggagaggatctgccacc 78801000
Query: 1394 attaacttatgaccag 1409
||||||||||||||||
Sbjct: 78800999 attaacttatgaccag 78800984
Score = 351 bits (177), Expect = 8e-94
Identities = 180/181 (99%)
Strand = Plus / Minus
Query: 613 agtacggacctgtatttagttttaccatggtgggcaaaacgtttacctaccttctgggga 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78807944 agtacggacctgtatttagttttaccatggtgggcaaaacgtttacctaccttctgggga 78807885
Query: 673 gcgatgccgctgcactgctttttaatagtaaaaatgaagatttgaatgcggaagatgtct 732
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 78807884 gcgatgccgctgcactgctttttaatagtaaaaatgaagatttgaatgcagaagatgtct 78807825
Query: 733 acagtcgcctgacaacacctgtgtttgggaagggagtcgcatatgatgtgcctaatccag 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78807824 acagtcgcctgacaacacctgtgtttgggaagggagtcgcatatgatgtgcctaatccag 78807765
Query: 793 t 793
|
Sbjct: 78807764 t 78807764
Score = 347 bits (175), Expect = 1e-92
Identities = 175/175 (100%)
Strand = Plus / Minus
Query: 919 atttgtttgaagctctttctgagctcataattttaacagcaagccattgtttacatggaa 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78804084 atttgtttgaagctctttctgagctcataattttaacagcaagccattgtttacatggaa 78804025
Query: 979 aggaaatcagaagtcagcttaacgagaaggtggcacaactgtatgcggatttggatggtg 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78804024 aggaaatcagaagtcagcttaacgagaaggtggcacaactgtatgcggatttggatggtg 78803965
Query: 1039 gttttagccacgcagcctggctcttaccaggctggcttcccttgcccagtttcag 1093
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78803964 gttttagccacgcagcctggctcttaccaggctggcttcccttgcccagtttcag 78803910
Score = 264 bits (133), Expect = 1e-67
Identities = 136/137 (99%)
Strand = Plus / Minus
Query: 1504 agactgtggcagggtacactattcctccaggacatcaggtgtgtgtttctcccactgtca 1563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78798717 agactgtggcagggtacactattcctccaggacatcaggtgtgtgtttctcccactgtca 78798658
Query: 1564 atcaaagacttaaagactcatgggtagaacgactggactttaatcctgatcgctacttac 1623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78798657 atcaaagacttaaagactcatgggtagaacgactggactttaatcctgatcgctacttac 78798598
Query: 1624 aggacaatccaacatca 1640
||||||||||| |||||
Sbjct: 78798597 aggacaatccagcatca 78798581
Score = 252 bits (127), Expect = 5e-64
Identities = 127/127 (100%)
Strand = Plus / Minus
Query: 792 gttttcttggagcagaagaagatgttaaaaagtggccttaacatagcccactttagacag 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78806176 gttttcttggagcagaagaagatgttaaaaagtggccttaacatagcccactttagacag 78806117
Query: 852 catgtttctataattgaaaaagaaacaaaggaatactttcaaagttggggagaaagtgga 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78806116 catgtttctataattgaaaaagaaacaaaggaatactttcaaagttggggagaaagtgga 78806057
Query: 912 gaaagaa 918
|||||||
Sbjct: 78806056 gaaagaa 78806050
Score = 238 bits (120), Expect = 8e-60
Identities = 123/124 (99%)
Strand = Plus / Minus
Query: 1091 cagacgcagggacagagcacatcgagagatcaagaatattttctataaggcaatccagaa 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78801686 cagacgcagggacagagcacatcgagagatcaagaatattttctataaggcaatccagaa 78801627
Query: 1151 acgcagacagtcagaagaaaaaattgatgacattctccaaaccttactagattctactta 1210
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78801626 acgcagacaatcagaagaaaaaattgatgacattctccaaaccttactagattctactta 78801567
Query: 1211 caag 1214
||||
Sbjct: 78801566 caag 78801563
Score = 198 bits (100), Expect = 7e-48
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 515 gaaaagtccaccatacattttctctccaattccatttcttggacatgctatagcatttgg 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78812310 gaaaagtccaccatacattttctctccaattccatttcttggacatgctatagcatttgg 78812251
Query: 575 gaaaagtccaattgaattcctagaaaatgcttatgagaag 614
||||||||||||||||||||||||||||||||||||||||
Sbjct: 78812250 gaaaagtccaattgaattcctagaaaatgcttatgagaag 78812211
Score = 194 bits (98), Expect = 1e-46
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 1408 agctcaaggatctaaacttacttgatcgctgcataaaagaaacgttaagacttcgacctc 1467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78799642 agctcaaggatctaaacttacttgatcgctgcataaaagaaacgttaagacttcgacctc 78799583
Query: 1468 cgataatgaccatgatgagaatggctaaaactcctcag 1505
||||||||||||||||||||||||||||||||||||||
Sbjct: 78799582 cgataatgaccatgatgagaatggctaaaactcctcag 78799545
>gb|GL892330.2| Sus scrofa unplaced genomic scaffold ChrUScaf217
Length = 49756
Score = 593 bits (299), Expect = e-166
Identities = 299/299 (100%)
Strand = Plus / Plus
Query: 1 atctcctcttaggccacattctggtctgtctctgtaccacccgtgcgacaggtgcagcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16939 atctcctcttaggccacattctggtctgtctctgtaccacccgtgcgacaggtgcagcat 16998
Query: 61 tattcttcaggtcctctctcctgcgtaaggagatgaccgcggcacgaagtacaatttatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16999 tattcttcaggtcctctctcctgcgtaaggagatgaccgcggcacgaagtacaatttatg 17058
Query: 121 gggcgtgggcataggaagcccctcccactcctgtgacgtacagggtggtgcgtgagggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17059 gggcgtgggcataggaagcccctcccactcctgtgacgtacagggtggtgcgtgagggag 17118
Query: 181 ccggcagtagggggtgcggctgggttcagcagggggcttgcgggccggcgccgctttccg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17119 ccggcagtagggggtgcggctgggttcagcagggggcttgcgggccggcgccgctttccg 17178
Query: 241 acgcccatctgctggctagtctccctcagtggtttcggaggagccgcggcgacctcggc 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17179 acgcccatctgctggctagtctccctcagtggtttcggaggagccgcggcgacctcggc 17237
Score = 351 bits (177), Expect = 8e-94
Identities = 180/181 (99%)
Strand = Plus / Plus
Query: 613 agtacggacctgtatttagttttaccatggtgggcaaaacgtttacctaccttctgggga 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23288 agtacggacctgtatttagttttaccatggtgggcaaaacgtttacctaccttctgggga 23347
Query: 673 gcgatgccgctgcactgctttttaatagtaaaaatgaagatttgaatgcggaagatgtct 732
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 23348 gcgatgccgctgcactgctttttaatagtaaaaatgaagatttgaatgcagaagatgtct 23407
Query: 733 acagtcgcctgacaacacctgtgtttgggaagggagtcgcatatgatgtgcctaatccag 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23408 acagtcgcctgacaacacctgtgtttgggaagggagtcgcatatgatgtgcctaatccag 23467
Query: 793 t 793
|
Sbjct: 23468 t 23468
Score = 347 bits (175), Expect = 1e-92
Identities = 175/175 (100%)
Strand = Plus / Plus
Query: 919 atttgtttgaagctctttctgagctcataattttaacagcaagccattgtttacatggaa 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27148 atttgtttgaagctctttctgagctcataattttaacagcaagccattgtttacatggaa 27207
Query: 979 aggaaatcagaagtcagcttaacgagaaggtggcacaactgtatgcggatttggatggtg 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27208 aggaaatcagaagtcagcttaacgagaaggtggcacaactgtatgcggatttggatggtg 27267
Query: 1039 gttttagccacgcagcctggctcttaccaggctggcttcccttgcccagtttcag 1093
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27268 gttttagccacgcagcctggctcttaccaggctggcttcccttgcccagtttcag 27322
Score = 252 bits (127), Expect = 5e-64
Identities = 127/127 (100%)
Strand = Plus / Plus
Query: 792 gttttcttggagcagaagaagatgttaaaaagtggccttaacatagcccactttagacag 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25056 gttttcttggagcagaagaagatgttaaaaagtggccttaacatagcccactttagacag 25115
Query: 852 catgtttctataattgaaaaagaaacaaaggaatactttcaaagttggggagaaagtgga 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25116 catgtttctataattgaaaaagaaacaaaggaatactttcaaagttggggagaaagtgga 25175
Query: 912 gaaagaa 918
|||||||
Sbjct: 25176 gaaagaa 25182
Score = 222 bits (112), Expect = 5e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 404 aactggcgtcaatctcctatccagtctgctcctcgcctgcgccttcacgctcatcttagt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17338 aactggcgtcaatctcctatccagtctgctcctcgcctgcgccttcacgctcatcttagt 17397
Query: 464 ttacctgttccgccaagccatcggccacctggccccactgccggctggagcg 515
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17398 ttacctgttccgccaagccatcggccacctggccccactgccggctggagcg 17449
Score = 198 bits (100), Expect = 7e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 515 gaaaagtccaccatacattttctctccaattccatttcttggacatgctatagcatttgg 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19380 gaaaagtccaccatacattttctctccaattccatttcttggacatgctatagcatttgg 19439
Query: 575 gaaaagtccaattgaattcctagaaaatgcttatgagaag 614
||||||||||||||||||||||||||||||||||||||||
Sbjct: 19440 gaaaagtccaattgaattcctagaaaatgcttatgagaag 19479
>gb|GL892553.2| Sus scrofa unplaced genomic scaffold ChrUScaf439
Length = 172264
Score = 99.6 bits (50), Expect = 5e-18
Identities = 143/175 (81%), Gaps = 8/175 (4%)
Strand = Plus / Plus
Query: 820 aaagtggccttaacatagcccactttagacagcatgtttctataattgaaaaagaaacaa 879
|||||||||||||||||| | |||| || ||| |||||||||| |||||||||||||
Sbjct: 96974 aaagtggccttaacatagtcaacttgaggtggcacatttctataatggaaaaagaaacaa 97033
Query: 880 aggaatactttcaaagttggggagaaagtggagaaagaaatttgtttgaagctctttctg 939
|||||| ||||| ||| || ||| ||||| | ||||||| || ||||||||||
Sbjct: 97034 aggaatgctttcgaagctgagga--------agaaaaagatttgttcgatgctctttctg 97085
Query: 940 agctcataattttaacagcaagccattgtttacatggaaaggaaatcagaagtca 994
| || || ||||||||||| |||||||||| ||||||||| |||||||||||||
Sbjct: 97086 atctgatcattttaacagctggccattgtttgcatggaaagaaaatcagaagtca 97140
Score = 83.8 bits (42), Expect = 3e-13
Identities = 93/110 (84%)
Strand = Plus / Plus
Query: 1381 aggatctgccaccattaacttatgaccagctcaaggatctaaacttacttgatcgctgca 1440
|||||||||| || | |||||| || |||||||| |||||||| |||||||| |||| |
Sbjct: 97629 aggatctgcctccttgaacttaggatcagctcaaagatctaaatgtacttgattgctgta 97688
Query: 1441 taaaagaaacgttaagacttcgacctccgataatgaccatgatgagaatg 1490
|||||||||| | |||| || ||||||| |||||||| |||||||||||
Sbjct: 97689 taaaagaaacatgaagagttagacctcctataatgactgtgatgagaatg 97738
Score = 69.9 bits (35), Expect = 4e-09
Identities = 223/283 (78%), Gaps = 7/283 (2%)
Strand = Plus / Plus
Query: 558 catgctatagcatttgggaaaagtccaattgaattcctagaaaatgcttatgagaagtac 617
||||| ||||| |||||||||| |||| |||||||| || | |||| |||||||| ||
Sbjct: 96456 catgccatagcctttgggaaaaatccacctgaattcccaggacatgcatatgagaaacac 96515
Query: 618 ggacctgtatttagttttaccatggtgggcaaaacgtttacctaccttctggggagcgat 677
|| |||||||||||||| ||||||| ||||| |||| ||| | |||| ||||| ||
Sbjct: 96516 agatctgtatttagttttcccatggtaggcaagacgtgtacttccctttctgggagtgag 96575
Query: 678 gccgctgcactgc--tttttaatagtaaaaatgaagatttgaatgcggaagatgtctaca 735
|| || | ||| |||| ||| ||||||||||||| ||||||| || | ||||| ||
Sbjct: 96576 gcagcaaaattgcatttttgaatcataaaaatgaagatgtgaatgcagacgttgtctgca 96635
Query: 736 gtcgcctgacaacacctgtgtttgggaagggagtcgcatatgatgtgcc----taatcca 791
||| || |||||| |||| ||||| |||||||| ||||| ||| || |||| |
Sbjct: 96636 gtcagctaacaacatctgtttttggcaagggagttgcataggatagaccaggttaatgta 96695
Query: 792 gttttcttggagcagaagaagatgttaaaaagtggccttaaca 834
|||||||||||||||||| | ||||| |||||||||||||||
Sbjct: 96696 gttttcttggagcagaagcaaatgtt-gaaagtggccttaaca 96737
Score = 63.9 bits (32), Expect = 3e-07
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 1222 gtcctttgacagatgatgaagtagccggcatgcttattggactgctcttggc 1273
||||||||||||||||||||||||| || | |||| |||| |||||||||||
Sbjct: 97498 gtcctttgacagatgatgaagtagcagggaagcttgttggcctgctcttggc 97549
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 51,781,738
Number of extensions: 413
Number of successful extensions: 413
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 412
Number of HSP's successfully gapped: 20
Length of query: 1640
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1618
Effective length of database: 2,808,408,574
Effective search space: 4544005072732
Effective search space used: 4544005072732
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)