Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008194
(2209 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094547.1| 26S proteasome non-ATPase regulatory subunit... 1275 0.0
Alignment gi|XP_001257165.2| PREDICTED: PSMD1 protein-like, partial [Bos ... 198 2e-50
>ref|NP_001094547.1| 26S proteasome non-ATPase regulatory subunit 1 [Bos taurus].
Length = 953
Score = 1275 bits (3299), Expect = 0.0
Identities = 646/685 (94%), Positives = 652/685 (95%)
Frame = +1
Query: 154 MITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA 333
MITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA
Sbjct: 1 MITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA 60
Query: 334 ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE 513
ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE
Sbjct: 61 ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE 120
Query: 514 GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS 693
GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS
Sbjct: 121 GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS 180
Query: 694 LKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKED 873
LKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKED
Sbjct: 181 LKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKED 240
Query: 874 NLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDSESMETE 1053
NLLMAYQICFDLYESASQQFLSSVIQNLRTVGTP+ASVPGSTNTGTVPGSE++S+SMETE
Sbjct: 241 NLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPLASVPGSTNTGTVPGSERESDSMETE 300
Query: 1054 EKTGSVLVGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV 1233
EKTGSVLVGKTPE SPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV
Sbjct: 301 EKTGSVLVGKTPEVSPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV 360
Query: 1234 RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEAL 1413
RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEAL
Sbjct: 361 RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEAL 420
Query: 1414 QLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRHXXXXX 1593
QLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRH
Sbjct: 421 QLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRHGGSLG 480
Query: 1594 XXXXXXXXXRQDVYDLLKTNLYQDDXXXXXXXXXXXXXXXXXSKNAQAIEDMVGYAQETQ 1773
RQDVYDLLKTNLYQDD SKNAQAIEDMVGYAQETQ
Sbjct: 481 LGLAAMGTARQDVYDLLKTNLYQDDAVTGEAAGLALGLVMLGSKNAQAIEDMVGYAQETQ 540
Query: 1774 HEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIR 1953
HEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIR
Sbjct: 541 HEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIR 600
Query: 1954 RLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICC 2133
RLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICC
Sbjct: 601 RLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICC 660
Query: 2134 AGTGKQEAINLLEPMTDDPVNYVRQ 2208
AGTG +EAINLLEPMT+DPVNYVRQ
Sbjct: 661 AGTGNKEAINLLEPMTNDPVNYVRQ 685
>ref|XP_001257165.2| PREDICTED: PSMD1 protein-like, partial [Bos taurus].
Length = 136
Score = 198 bits (503), Expect = 2e-50
Identities = 105/136 (77%), Positives = 105/136 (77%)
Frame = +1
Query: 1567 IVRHXXXXXXXXXXXXXXRQDVYDLLKTNLYQDDXXXXXXXXXXXXXXXXXSKNAQAIED 1746
IVRH RQDVYDLLKTNLYQDD SKNAQAIED
Sbjct: 1 IVRHGGSLGLGLAAMGTARQDVYDLLKTNLYQDDAVTGEAAGLALGLVMLGSKNAQAIED 60
Query: 1747 MVGYAQETQHEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYC 1926
MVGYAQETQHEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYC
Sbjct: 61 MVGYAQETQHEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYC 120
Query: 1927 GSGNNKAIRRLLHVAV 1974
GSGNNKAIRRLLHVAV
Sbjct: 121 GSGNNKAIRRLLHVAV 136
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 76,143,971
Number of extensions: 1875981
Number of successful extensions: 5368
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5357
Number of HSP's successfully gapped: 2
Length of query: 736
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 626
Effective length of database: 14,041,694
Effective search space: 8790100444
Effective search space used: 8790100444
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008194
(2209 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 79,236,980
Number of extensions: 1911535
Number of successful extensions: 5557
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 5543
Number of HSP's successfully gapped: 0
Length of query: 736
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 626
Effective length of database: 15,207,544
Effective search space: 9519922544
Effective search space used: 9519922544
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008194
(2209 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001925937.2| PREDICTED: 26S proteasome non-ATPase regulat... 802 0.0
Alignment gi|XP_003361314.1| PREDICTED: 26S proteasome non-ATPase regulat... 427 e-120
Alignment gi|XP_003359721.1| PREDICTED: 26S proteasome non-ATPase regulat... 342 7e-94
>ref|XP_001925937.2| PREDICTED: 26S proteasome non-ATPase regulatory subunit 1 [Sus
scrofa].
Length = 817
Score = 802 bits (2071), Expect = 0.0
Identities = 408/442 (92%), Positives = 410/442 (92%)
Frame = +1
Query: 883 MAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDSESMETEEKT 1062
MAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDSESMETEEKT
Sbjct: 1 MAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDSESMETEEKT 60
Query: 1063 GSVLVGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAVRNS 1242
GSVLVGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAVRNS
Sbjct: 61 GSVLVGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAVRNS 120
Query: 1243 VCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEALQLM 1422
VCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEALQLM
Sbjct: 121 VCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEALQLM 180
Query: 1423 ATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRHXXXXXXXX 1602
ATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRH
Sbjct: 181 ATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRHGGSLGLGL 240
Query: 1603 XXXXXXRQDVYDLLKTNLYQDDXXXXXXXXXXXXXXXXXSKNAQAIEDMVGYAQETQHEK 1782
RQDVYDLLKTNLYQDD SKNAQAIEDMVGYAQETQHEK
Sbjct: 241 AAMGTARQDVYDLLKTNLYQDDAVTGEAAGLALGLVMLGSKNAQAIEDMVGYAQETQHEK 300
Query: 1783 ILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIRRLL 1962
ILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIRRLL
Sbjct: 301 ILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIRRLL 360
Query: 1963 HVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICCAGT 2142
HVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICCAGT
Sbjct: 361 HVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICCAGT 420
Query: 2143 GKQEAINLLEPMTDDPVNYVRQ 2208
G +EAINLLEPMT+DPVNYVRQ
Sbjct: 421 GNKEAINLLEPMTNDPVNYVRQ 442
>ref|XP_003361314.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 1-like,
partial [Sus scrofa].
Length = 248
Score = 427 bits (1099), Expect = e-120
Identities = 213/216 (98%), Positives = 215/216 (99%)
Frame = +1
Query: 169 AGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAALVAS 348
AGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAALVAS
Sbjct: 27 AGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAALVAS 86
Query: 349 KVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPEGEKKP 528
KVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPEGEKKP
Sbjct: 87 KVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPEGEKKP 146
Query: 529 IDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYSLKLCM 708
IDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYSLKLCM
Sbjct: 147 IDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYSLKLCM 206
Query: 709 SLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLI 816
SLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQ ++
Sbjct: 207 SLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQVVL 242
>ref|XP_003359721.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 1-like [Sus
scrofa].
Length = 185
Score = 342 bits (876), Expect = 7e-94
Identities = 171/171 (100%), Positives = 171/171 (100%)
Frame = +1
Query: 154 MITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA 333
MITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA
Sbjct: 1 MITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA 60
Query: 334 ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE 513
ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE
Sbjct: 61 ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE 120
Query: 514 GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESN 666
GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESN
Sbjct: 121 GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESN 171
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 49,033,308
Number of extensions: 1221274
Number of successful extensions: 3318
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3315
Number of HSP's successfully gapped: 3
Length of query: 736
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 630
Effective length of database: 8,704,850
Effective search space: 5484055500
Effective search space used: 5484055500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008194
(2209 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081633.1| 26S proteasome non-ATPase regulatory subunit 1 ... 1270 0.0
>ref|NP_081633.1| 26S proteasome non-ATPase regulatory subunit 1 [Mus musculus].
Length = 953
Score = 1270 bits (3287), Expect = 0.0
Identities = 644/685 (94%), Positives = 649/685 (94%)
Frame = +1
Query: 154 MITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA 333
MITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA
Sbjct: 1 MITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA 60
Query: 334 ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE 513
ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE
Sbjct: 61 ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE 120
Query: 514 GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS 693
GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS
Sbjct: 121 GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS 180
Query: 694 LKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKED 873
LKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKED
Sbjct: 181 LKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKED 240
Query: 874 NLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDSESMETE 1053
NLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDS+ METE
Sbjct: 241 NLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDSDPMETE 300
Query: 1054 EKTGSVLVGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV 1233
EKT S + GKTP+ASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV
Sbjct: 301 EKTASAVAGKTPDASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV 360
Query: 1234 RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEAL 1413
RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEAL
Sbjct: 361 RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEAL 420
Query: 1414 QLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRHXXXXX 1593
QLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRH
Sbjct: 421 QLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRHGGSLG 480
Query: 1594 XXXXXXXXXRQDVYDLLKTNLYQDDXXXXXXXXXXXXXXXXXSKNAQAIEDMVGYAQETQ 1773
RQDVYDLLKTNLYQDD SKNAQAIEDMVGYAQETQ
Sbjct: 481 LGLAAMGTARQDVYDLLKTNLYQDDAVTGEAAGLALGLVMLGSKNAQAIEDMVGYAQETQ 540
Query: 1774 HEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIR 1953
HEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIR
Sbjct: 541 HEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIR 600
Query: 1954 RLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICC 2133
RLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICC
Sbjct: 601 RLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICC 660
Query: 2134 AGTGKQEAINLLEPMTDDPVNYVRQ 2208
AGTG +EAINLLEPMT+DPVNYVRQ
Sbjct: 661 AGTGNKEAINLLEPMTNDPVNYVRQ 685
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 66,801,384
Number of extensions: 1627811
Number of successful extensions: 4588
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4581
Number of HSP's successfully gapped: 1
Length of query: 736
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 627
Effective length of database: 12,343,635
Effective search space: 7739459145
Effective search space used: 7739459145
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008194
(2209 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001177966.1| 26S proteasome non-ATPase regulatory subunit... 1273 0.0
Alignment gi|NP_002798.2| 26S proteasome non-ATPase regulatory subunit 1 ... 1273 0.0
>ref|NP_001177966.1| 26S proteasome non-ATPase regulatory subunit 1 isoform 2 [Homo
sapiens].
Length = 922
Score = 1273 bits (3295), Expect = 0.0
Identities = 646/685 (94%), Positives = 650/685 (94%)
Frame = +1
Query: 154 MITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA 333
MITSAAGIISLLDE+EPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA
Sbjct: 1 MITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA 60
Query: 334 ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE 513
ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE
Sbjct: 61 ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE 120
Query: 514 GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS 693
GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS
Sbjct: 121 GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS 180
Query: 694 LKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKED 873
LKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKED
Sbjct: 181 LKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKED 240
Query: 874 NLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDSESMETE 1053
NLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDS+SMETE
Sbjct: 241 NLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDSDSMETE 300
Query: 1054 EKTGSVLVGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV 1233
EKT S VGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV
Sbjct: 301 EKTSSAFVGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV 360
Query: 1234 RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEAL 1413
RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEAL
Sbjct: 361 RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEAL 420
Query: 1414 QLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRHXXXXX 1593
QLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRH
Sbjct: 421 QLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRHGGSLG 480
Query: 1594 XXXXXXXXXRQDVYDLLKTNLYQDDXXXXXXXXXXXXXXXXXSKNAQAIEDMVGYAQETQ 1773
RQDVYDLLKTNLYQDD SKNAQAIEDMVGYAQETQ
Sbjct: 481 LGLAAMGTARQDVYDLLKTNLYQDDAVTGEAAGLALGLVMLGSKNAQAIEDMVGYAQETQ 540
Query: 1774 HEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIR 1953
HEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIR
Sbjct: 541 HEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIR 600
Query: 1954 RLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICC 2133
RLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICC
Sbjct: 601 RLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICC 660
Query: 2134 AGTGKQEAINLLEPMTDDPVNYVRQ 2208
AGTG +EAINLLEPMT+DPVNYVRQ
Sbjct: 661 AGTGNKEAINLLEPMTNDPVNYVRQ 685
>ref|NP_002798.2| 26S proteasome non-ATPase regulatory subunit 1 isoform 1 [Homo
sapiens].
Length = 953
Score = 1273 bits (3295), Expect = 0.0
Identities = 646/685 (94%), Positives = 650/685 (94%)
Frame = +1
Query: 154 MITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA 333
MITSAAGIISLLDE+EPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA
Sbjct: 1 MITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA 60
Query: 334 ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE 513
ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE
Sbjct: 61 ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE 120
Query: 514 GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS 693
GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS
Sbjct: 121 GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS 180
Query: 694 LKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKED 873
LKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKED
Sbjct: 181 LKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKED 240
Query: 874 NLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDSESMETE 1053
NLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDS+SMETE
Sbjct: 241 NLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDSDSMETE 300
Query: 1054 EKTGSVLVGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV 1233
EKT S VGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV
Sbjct: 301 EKTSSAFVGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV 360
Query: 1234 RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEAL 1413
RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEAL
Sbjct: 361 RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEAL 420
Query: 1414 QLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRHXXXXX 1593
QLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRH
Sbjct: 421 QLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRHGGSLG 480
Query: 1594 XXXXXXXXXRQDVYDLLKTNLYQDDXXXXXXXXXXXXXXXXXSKNAQAIEDMVGYAQETQ 1773
RQDVYDLLKTNLYQDD SKNAQAIEDMVGYAQETQ
Sbjct: 481 LGLAAMGTARQDVYDLLKTNLYQDDAVTGEAAGLALGLVMLGSKNAQAIEDMVGYAQETQ 540
Query: 1774 HEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIR 1953
HEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIR
Sbjct: 541 HEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIR 600
Query: 1954 RLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICC 2133
RLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICC
Sbjct: 601 RLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICC 660
Query: 2134 AGTGKQEAINLLEPMTDDPVNYVRQ 2208
AGTG +EAINLLEPMT+DPVNYVRQ
Sbjct: 661 AGTGNKEAINLLEPMTNDPVNYVRQ 685
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 78,161,564
Number of extensions: 1908267
Number of successful extensions: 5369
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5362
Number of HSP's successfully gapped: 2
Length of query: 736
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 626
Effective length of database: 14,671,124
Effective search space: 9184123624
Effective search space used: 9184123624
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008194
(2209 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 458 e-126
gb|GL894014.2| Sus scrofa unplaced genomic scaffold ChrUScaf1899 367 2e-98
>Sscrofa_Chr15
|| Length = 157681621
Score = 458 bits (231), Expect = e-126
Identities = 231/231 (100%)
Strand = Plus / Plus
Query: 804 tcagtgcttaattttcttagatgatcctcaggccgtgagtgatatcttagaaaaactggt 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145544336 tcagtgcttaattttcttagatgatcctcaggccgtgagtgatatcttagaaaaactggt 145544395
Query: 864 aaaggaagacaacctcctgatggcttatcaaatttgttttgatttgtatgaaagtgctag 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145544396 aaaggaagacaacctcctgatggcttatcaaatttgttttgatttgtatgaaagtgctag 145544455
Query: 924 ccagcagtttttgtcatctgtaatccagaatcttcgaactgttggcactcctattgcttc 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145544456 ccagcagtttttgtcatctgtaatccagaatcttcgaactgttggcactcctattgcttc 145544515
Query: 984 tgtgcctggatctacaaatacgggtactgttccaggatcagagaaagacag 1034
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145544516 tgtgcctggatctacaaatacgggtactgttccaggatcagagaaagacag 145544566
Score = 396 bits (200), Expect = e-107
Identities = 200/200 (100%)
Strand = Plus / Plus
Query: 1677 aggggaagcagctggcctggccctaggtttggtcatgttgggctctaaaaatgcccaggc 1736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145553260 aggggaagcagctggcctggccctaggtttggtcatgttgggctctaaaaatgcccaggc 145553319
Query: 1737 tattgaggacatggtcggctatgcacaggaaactcaacatgagaagattctacgtggtct 1796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145553320 tattgaggacatggtcggctatgcacaggaaactcaacatgagaagattctacgtggtct 145553379
Query: 1797 tgcagttggcattgcgttagtgatgtacgggaggatggaagaggctgatgctctcattga 1856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145553380 tgcagttggcattgcgttagtgatgtacgggaggatggaagaggctgatgctctcattga 145553439
Query: 1857 gtcgctctgccgtgataagg 1876
||||||||||||||||||||
Sbjct: 145553440 gtcgctctgccgtgataagg 145553459
Score = 367 bits (185), Expect = 2e-98
Identities = 201/209 (96%)
Strand = Plus / Plus
Query: 455 tagcaaagtgcattgatcactacaccaaacaatgtgtggaaaatgcagatttgcctgaag 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145535982 tagcaaagtgcattgatcactacaccaaacaatgtgtggaaaatgcagatttgcctgaag 145536041
Query: 515 gagnnnnnnnnccaattgatcagagattggaaggtattgtgaataaaatgtttcagcgat 574
||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145536042 gagaaaaaaaaccaattgatcagagattggaaggtattgtgaataaaatgtttcagcgat 145536101
Query: 575 gtctagatgatcacaaatacaaacaagctattggcattgctctggagacacgaaggctgg 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145536102 gtctagatgatcacaaatacaaacaagctattggcattgctctggagacacgaaggctgg 145536161
Query: 635 acgtctttgagaagactatacttgagtcg 663
|||||||||||||||||||||||||||||
Sbjct: 145536162 acgtctttgagaagactatacttgagtcg 145536190
Score = 349 bits (176), Expect = 4e-93
Identities = 176/176 (100%)
Strand = Plus / Plus
Query: 1391 agggtcatgagaaggaagcattacagttaatggcaacgtatcttcccaaggacacctctc 1450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145550610 agggtcatgagaaggaagcattacagttaatggcaacgtatcttcccaaggacacctctc 145550669
Query: 1451 caggatcagcctatcaggaaggtggaggcctctatgcactaggtctcatccatgccaatc 1510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145550670 caggatcagcctatcaggaaggtggaggcctctatgcactaggtctcatccatgccaatc 145550729
Query: 1511 atggtggggatataattgactatctgcttaaccagctcaagaatgcgagcaatgat 1566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145550730 atggtggggatataattgactatctgcttaaccagctcaagaatgcgagcaatgat 145550785
Score = 337 bits (170), Expect = 2e-89
Identities = 170/170 (100%)
Strand = Plus / Plus
Query: 288 agaagttttgtatgaagatgaaggtttccggagtcggcagtttgcagccttagtggcatc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145531578 agaagttttgtatgaagatgaaggtttccggagtcggcagtttgcagccttagtggcatc 145531637
Query: 348 taaagtattttatcacctgggggcttttgaggagtctctgaattatgcacttggagcagg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145531638 taaagtattttatcacctgggggcttttgaggagtctctgaattatgcacttggagcagg 145531697
Query: 408 tgacctcttcaatgtcaatgacaactctgaatatgtggagactattatag 457
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145531698 tgacctcttcaatgtcaatgacaactctgaatatgtggagactattatag 145531747
Score = 287 bits (145), Expect = 1e-74
Identities = 145/145 (100%)
Strand = Plus / Plus
Query: 663 gaatgatgtcccaggaatgctggcttatagcctcaagctctgcatgtctttaatgcagaa 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145539745 gaatgatgtcccaggaatgctggcttatagcctcaagctctgcatgtctttaatgcagaa 145539804
Query: 723 taaacagtttcggaataaagtactgagagttctggttaaaatctacatgaacttggagaa 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145539805 taaacagtttcggaataaagtactgagagttctggttaaaatctacatgaacttggagaa 145539864
Query: 783 acctgatttcatcaatgtttgtcag 807
|||||||||||||||||||||||||
Sbjct: 145539865 acctgatttcatcaatgtttgtcag 145539889
Score = 260 bits (131), Expect = 3e-66
Identities = 131/131 (100%)
Strand = Plus / Plus
Query: 1095 gagtccagagcccaaggaccagactttgaaaatgattaaaattttaagcggtgaaatggc 1154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145547320 gagtccagagcccaaggaccagactttgaaaatgattaaaattttaagcggtgaaatggc 145547379
Query: 1155 tattgagctacatctgcagtttttaatacgaaacaataacacagatctcatgattctaaa 1214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145547380 tattgagctacatctgcagtttttaatacgaaacaataacacagatctcatgattctaaa 145547439
Query: 1215 aaacacaaagg 1225
|||||||||||
Sbjct: 145547440 aaacacaaagg 145547450
Score = 226 bits (114), Expect = 4e-56
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 2034 caggacccctgaacagtgtcccagcgtggtttcattgttgtcagagagttacaatcctca 2093
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145589552 caggacccctgaacagtgtcccagcgtggtttcattgttgtcagagagttacaatcctca 145589611
Query: 2094 cgtgcgttacggagccgcaatggccctgggtatctgctgtgctggtacaggaaa 2147
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145589612 cgtgcgttacggagccgcaatggccctgggtatctgctgtgctggtacaggaaa 145589665
Score = 224 bits (113), Expect = 2e-55
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 1 gaagcgagccggcggcctgaggaggtgactgactgagcggggcaccggggcagccaggag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145524730 gaagcgagccggcggcctgaggaggtgactgactgagcggggcaccggggcagccaggag 145524789
Query: 61 acgcggcggagcgagcgggtcctgagctgacatatacacggcgcggccggggc 113
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145524790 acgcggcggagcgagcgggtcctgagctgacatatacacggcgcggccggggc 145524842
Score = 224 bits (113), Expect = 2e-55
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 1567 atcgttcgacatggtggcagtctgggccttggtttggcagccatggggaccgcccgccag 1626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145552587 atcgttcgacatggtggcagtctgggccttggtttggcagccatggggaccgcccgccag 145552646
Query: 1627 gacgtgtatgatttgctgaagacaaacctttatcaggatgatgctgtcacagg 1679
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145552647 gacgtgtatgatttgctgaagacaaacctttatcaggatgatgctgtcacagg 145552699
Score = 206 bits (104), Expect = 4e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 1874 aggatccaattcttcgacggtctggaatgtataccgtagccatggcttactgtggctcag 1933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145554952 aggatccaattcttcgacggtctggaatgtataccgtagccatggcttactgtggctcag 145555011
Query: 1934 gtaacaacaaggctattcgacgcctgctgcatgtcgctgtaagt 1977
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145555012 gtaacaacaaggctattcgacgcctgctgcatgtcgctgtaagt 145555055
Score = 172 bits (87), Expect = 5e-40
Identities = 90/91 (98%)
Strand = Plus / Plus
Query: 1223 aggatgcagtaaggaattctgtatgtcacacagcaaccgttatagcaaactcttttatgc 1282
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 145549512 aggatgcagtaaggaattctgtatgtcacacagctaccgttatagcaaactcttttatgc 145549571
Query: 1283 actgtgggactaccagtgaccagtttcttag 1313
|||||||||||||||||||||||||||||||
Sbjct: 145549572 actgtgggactaccagtgaccagtttcttag 145549602
Score = 163 bits (82), Expect = 5e-37
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 1312 agagataacttggaatggttagccagagccactaactgggcaaaatttacagccacagcc 1371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145550059 agagataacttggaatggttagccagagccactaactgggcaaaatttacagccacagcc 145550118
Query: 1372 agtttgggtgtaattcataagg 1393
||||||||||||||||||||||
Sbjct: 145550119 agtttgggtgtaattcataagg 145550140
Score = 151 bits (76), Expect = 2e-33
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 212 aggaatttgcactacacaaattgaatgcagttgtcaatgacttctgggcagaaatttctg 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145531315 aggaatttgcactacacaaattgaatgcagttgtcaatgacttctgggcagaaatttctg 145531374
Query: 272 agtctgtagacaaaat 287
||||||||||||||||
Sbjct: 145531375 agtctgtagacaaaat 145531390
Score = 131 bits (66), Expect = 2e-27
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 1972 gtaagtgatgttaacgatgatgtcaggagagcagcagtagaatcacttgggttcattctc 2031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145557642 gtaagtgatgttaacgatgatgtcaggagagcagcagtagaatcacttgggttcattctc 145557701
Query: 2032 ttcagg 2037
||||||
Sbjct: 145557702 ttcagg 145557707
Score = 125 bits (63), Expect = 1e-25
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 1033 agtgaatcaatggaaacagaagaaaagacaggtagtgtacttgtaggaaagacaccagaa 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145546344 agtgaatcaatggaaacagaagaaaagacaggtagtgtacttgtaggaaagacaccagaa 145546403
Query: 1093 gcg 1095
|||
Sbjct: 145546404 gcg 145546406
Score = 105 bits (53), Expect = 1e-19
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 2149 caggaagcaattaatttgttagaacccatgacggatgaccctgtgaactatgtgaggcaa 2208
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 145594667 caggaagcaattaatttgttagaaccaatgacgaatgaccctgtgaactatgtgaggcaa 145594726
Query: 2209 g 2209
|
Sbjct: 145594727 g 145594727
Score = 91.7 bits (46), Expect = 2e-15
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 169 gctggaattatttctcttctggatgaagaagaaccacagcttaagg 214
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145529863 gctggaattatttctcttctggatgaagaagaaccacagcttaagg 145529908
Score = 60.0 bits (30), Expect = 5e-06
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 140 tgcggggcgcagccatgatcacctcagccg 169
||||||||||||||||||||||||||||||
Sbjct: 145524869 tgcggggcgcagccatgatcacctcagccg 145524898
>gb|GL894014.2| Sus scrofa unplaced genomic scaffold ChrUScaf1899
Length = 15910
Score = 367 bits (185), Expect = 2e-98
Identities = 201/209 (96%)
Strand = Plus / Minus
Query: 455 tagcaaagtgcattgatcactacaccaaacaatgtgtggaaaatgcagatttgcctgaag 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7419 tagcaaagtgcattgatcactacaccaaacaatgtgtggaaaatgcagatttgcctgaag 7360
Query: 515 gagnnnnnnnnccaattgatcagagattggaaggtattgtgaataaaatgtttcagcgat 574
||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7359 gagaaaaaaaaccaattgatcagagattggaaggtattgtgaataaaatgtttcagcgat 7300
Query: 575 gtctagatgatcacaaatacaaacaagctattggcattgctctggagacacgaaggctgg 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7299 gtctagatgatcacaaatacaaacaagctattggcattgctctggagacacgaaggctgg 7240
Query: 635 acgtctttgagaagactatacttgagtcg 663
|||||||||||||||||||||||||||||
Sbjct: 7239 acgtctttgagaagactatacttgagtcg 7211
Score = 337 bits (170), Expect = 2e-89
Identities = 170/170 (100%)
Strand = Plus / Minus
Query: 288 agaagttttgtatgaagatgaaggtttccggagtcggcagtttgcagccttagtggcatc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11493 agaagttttgtatgaagatgaaggtttccggagtcggcagtttgcagccttagtggcatc 11434
Query: 348 taaagtattttatcacctgggggcttttgaggagtctctgaattatgcacttggagcagg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11433 taaagtattttatcacctgggggcttttgaggagtctctgaattatgcacttggagcagg 11374
Query: 408 tgacctcttcaatgtcaatgacaactctgaatatgtggagactattatag 457
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11373 tgacctcttcaatgtcaatgacaactctgaatatgtggagactattatag 11324
Score = 287 bits (145), Expect = 1e-74
Identities = 145/145 (100%)
Strand = Plus / Minus
Query: 663 gaatgatgtcccaggaatgctggcttatagcctcaagctctgcatgtctttaatgcagaa 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4113 gaatgatgtcccaggaatgctggcttatagcctcaagctctgcatgtctttaatgcagaa 4054
Query: 723 taaacagtttcggaataaagtactgagagttctggttaaaatctacatgaacttggagaa 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4053 taaacagtttcggaataaagtactgagagttctggttaaaatctacatgaacttggagaa 3994
Query: 783 acctgatttcatcaatgtttgtcag 807
|||||||||||||||||||||||||
Sbjct: 3993 acctgatttcatcaatgtttgtcag 3969
Score = 151 bits (76), Expect = 2e-33
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 212 aggaatttgcactacacaaattgaatgcagttgtcaatgacttctgggcagaaatttctg 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11756 aggaatttgcactacacaaattgaatgcagttgtcaatgacttctgggcagaaatttctg 11697
Query: 272 agtctgtagacaaaat 287
||||||||||||||||
Sbjct: 11696 agtctgtagacaaaat 11681
Score = 91.7 bits (46), Expect = 2e-15
Identities = 46/46 (100%)
Strand = Plus / Minus
Query: 169 gctggaattatttctcttctggatgaagaagaaccacagcttaagg 214
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12764 gctggaattatttctcttctggatgaagaagaaccacagcttaagg 12719
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 68,725,787
Number of extensions: 410
Number of successful extensions: 410
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 410
Number of HSP's successfully gapped: 26
Length of query: 2209
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2187
Effective length of database: 2,808,408,574
Effective search space: 6141989551338
Effective search space used: 6141989551338
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)