Animal-Genome cDNA 20110601C-008194


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008194
         (2209 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001094547.1| 26S proteasome non-ATPase regulatory subunit...  1275   0.0  
Alignment   gi|XP_001257165.2| PREDICTED: PSMD1 protein-like, partial [Bos ...   198   2e-50

>ref|NP_001094547.1| 26S proteasome non-ATPase regulatory subunit 1 [Bos taurus].
          Length = 953

 Score = 1275 bits (3299), Expect = 0.0
 Identities = 646/685 (94%), Positives = 652/685 (95%)
 Frame = +1

Query: 154  MITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA 333
            MITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA
Sbjct: 1    MITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA 60

Query: 334  ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE 513
            ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE
Sbjct: 61   ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE 120

Query: 514  GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS 693
            GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS
Sbjct: 121  GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS 180

Query: 694  LKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKED 873
            LKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKED
Sbjct: 181  LKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKED 240

Query: 874  NLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDSESMETE 1053
            NLLMAYQICFDLYESASQQFLSSVIQNLRTVGTP+ASVPGSTNTGTVPGSE++S+SMETE
Sbjct: 241  NLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPLASVPGSTNTGTVPGSERESDSMETE 300

Query: 1054 EKTGSVLVGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV 1233
            EKTGSVLVGKTPE SPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV
Sbjct: 301  EKTGSVLVGKTPEVSPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV 360

Query: 1234 RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEAL 1413
            RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEAL
Sbjct: 361  RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEAL 420

Query: 1414 QLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRHXXXXX 1593
            QLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRH     
Sbjct: 421  QLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRHGGSLG 480

Query: 1594 XXXXXXXXXRQDVYDLLKTNLYQDDXXXXXXXXXXXXXXXXXSKNAQAIEDMVGYAQETQ 1773
                     RQDVYDLLKTNLYQDD                 SKNAQAIEDMVGYAQETQ
Sbjct: 481  LGLAAMGTARQDVYDLLKTNLYQDDAVTGEAAGLALGLVMLGSKNAQAIEDMVGYAQETQ 540

Query: 1774 HEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIR 1953
            HEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIR
Sbjct: 541  HEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIR 600

Query: 1954 RLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICC 2133
            RLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICC
Sbjct: 601  RLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICC 660

Query: 2134 AGTGKQEAINLLEPMTDDPVNYVRQ 2208
            AGTG +EAINLLEPMT+DPVNYVRQ
Sbjct: 661  AGTGNKEAINLLEPMTNDPVNYVRQ 685


>ref|XP_001257165.2| PREDICTED: PSMD1 protein-like, partial [Bos taurus].
          Length = 136

 Score =  198 bits (503), Expect = 2e-50
 Identities = 105/136 (77%), Positives = 105/136 (77%)
 Frame = +1

Query: 1567 IVRHXXXXXXXXXXXXXXRQDVYDLLKTNLYQDDXXXXXXXXXXXXXXXXXSKNAQAIED 1746
            IVRH              RQDVYDLLKTNLYQDD                 SKNAQAIED
Sbjct: 1    IVRHGGSLGLGLAAMGTARQDVYDLLKTNLYQDDAVTGEAAGLALGLVMLGSKNAQAIED 60

Query: 1747 MVGYAQETQHEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYC 1926
            MVGYAQETQHEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYC
Sbjct: 61   MVGYAQETQHEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYC 120

Query: 1927 GSGNNKAIRRLLHVAV 1974
            GSGNNKAIRRLLHVAV
Sbjct: 121  GSGNNKAIRRLLHVAV 136


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 76,143,971
Number of extensions: 1875981
Number of successful extensions: 5368
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5357
Number of HSP's successfully gapped: 2
Length of query: 736
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 626
Effective length of database: 14,041,694
Effective search space: 8790100444
Effective search space used: 8790100444
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008194
         (2209 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done

 ***** No hits found ******


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 79,236,980
Number of extensions: 1911535
Number of successful extensions: 5557
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 5543
Number of HSP's successfully gapped: 0
Length of query: 736
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 626
Effective length of database: 15,207,544
Effective search space: 9519922544
Effective search space used: 9519922544
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008194
         (2209 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_001925937.2| PREDICTED: 26S proteasome non-ATPase regulat...   802   0.0  
Alignment   gi|XP_003361314.1| PREDICTED: 26S proteasome non-ATPase regulat...   427   e-120
Alignment   gi|XP_003359721.1| PREDICTED: 26S proteasome non-ATPase regulat...   342   7e-94

>ref|XP_001925937.2| PREDICTED: 26S proteasome non-ATPase regulatory subunit 1 [Sus
            scrofa].
          Length = 817

 Score =  802 bits (2071), Expect = 0.0
 Identities = 408/442 (92%), Positives = 410/442 (92%)
 Frame = +1

Query: 883  MAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDSESMETEEKT 1062
            MAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDSESMETEEKT
Sbjct: 1    MAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDSESMETEEKT 60

Query: 1063 GSVLVGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAVRNS 1242
            GSVLVGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAVRNS
Sbjct: 61   GSVLVGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAVRNS 120

Query: 1243 VCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEALQLM 1422
            VCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEALQLM
Sbjct: 121  VCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEALQLM 180

Query: 1423 ATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRHXXXXXXXX 1602
            ATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRH        
Sbjct: 181  ATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRHGGSLGLGL 240

Query: 1603 XXXXXXRQDVYDLLKTNLYQDDXXXXXXXXXXXXXXXXXSKNAQAIEDMVGYAQETQHEK 1782
                  RQDVYDLLKTNLYQDD                 SKNAQAIEDMVGYAQETQHEK
Sbjct: 241  AAMGTARQDVYDLLKTNLYQDDAVTGEAAGLALGLVMLGSKNAQAIEDMVGYAQETQHEK 300

Query: 1783 ILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIRRLL 1962
            ILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIRRLL
Sbjct: 301  ILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIRRLL 360

Query: 1963 HVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICCAGT 2142
            HVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICCAGT
Sbjct: 361  HVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICCAGT 420

Query: 2143 GKQEAINLLEPMTDDPVNYVRQ 2208
            G +EAINLLEPMT+DPVNYVRQ
Sbjct: 421  GNKEAINLLEPMTNDPVNYVRQ 442


>ref|XP_003361314.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 1-like,
           partial [Sus scrofa].
          Length = 248

 Score =  427 bits (1099), Expect = e-120
 Identities = 213/216 (98%), Positives = 215/216 (99%)
 Frame = +1

Query: 169 AGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAALVAS 348
           AGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAALVAS
Sbjct: 27  AGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAALVAS 86

Query: 349 KVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPEGEKKP 528
           KVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPEGEKKP
Sbjct: 87  KVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPEGEKKP 146

Query: 529 IDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYSLKLCM 708
           IDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYSLKLCM
Sbjct: 147 IDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYSLKLCM 206

Query: 709 SLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLI 816
           SLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQ ++
Sbjct: 207 SLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQVVL 242


>ref|XP_003359721.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 1-like [Sus
           scrofa].
          Length = 185

 Score =  342 bits (876), Expect = 7e-94
 Identities = 171/171 (100%), Positives = 171/171 (100%)
 Frame = +1

Query: 154 MITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA 333
           MITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA
Sbjct: 1   MITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA 60

Query: 334 ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE 513
           ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE
Sbjct: 61  ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE 120

Query: 514 GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESN 666
           GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESN
Sbjct: 121 GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESN 171


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 49,033,308
Number of extensions: 1221274
Number of successful extensions: 3318
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3315
Number of HSP's successfully gapped: 3
Length of query: 736
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 630
Effective length of database: 8,704,850
Effective search space: 5484055500
Effective search space used: 5484055500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008194
         (2209 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_081633.1| 26S proteasome non-ATPase regulatory subunit 1 ...  1270   0.0  

>ref|NP_081633.1| 26S proteasome non-ATPase regulatory subunit 1 [Mus musculus].
          Length = 953

 Score = 1270 bits (3287), Expect = 0.0
 Identities = 644/685 (94%), Positives = 649/685 (94%)
 Frame = +1

Query: 154  MITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA 333
            MITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA
Sbjct: 1    MITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA 60

Query: 334  ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE 513
            ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE
Sbjct: 61   ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE 120

Query: 514  GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS 693
            GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS
Sbjct: 121  GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS 180

Query: 694  LKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKED 873
            LKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKED
Sbjct: 181  LKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKED 240

Query: 874  NLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDSESMETE 1053
            NLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDS+ METE
Sbjct: 241  NLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDSDPMETE 300

Query: 1054 EKTGSVLVGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV 1233
            EKT S + GKTP+ASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV
Sbjct: 301  EKTASAVAGKTPDASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV 360

Query: 1234 RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEAL 1413
            RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEAL
Sbjct: 361  RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEAL 420

Query: 1414 QLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRHXXXXX 1593
            QLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRH     
Sbjct: 421  QLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRHGGSLG 480

Query: 1594 XXXXXXXXXRQDVYDLLKTNLYQDDXXXXXXXXXXXXXXXXXSKNAQAIEDMVGYAQETQ 1773
                     RQDVYDLLKTNLYQDD                 SKNAQAIEDMVGYAQETQ
Sbjct: 481  LGLAAMGTARQDVYDLLKTNLYQDDAVTGEAAGLALGLVMLGSKNAQAIEDMVGYAQETQ 540

Query: 1774 HEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIR 1953
            HEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIR
Sbjct: 541  HEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIR 600

Query: 1954 RLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICC 2133
            RLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICC
Sbjct: 601  RLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICC 660

Query: 2134 AGTGKQEAINLLEPMTDDPVNYVRQ 2208
            AGTG +EAINLLEPMT+DPVNYVRQ
Sbjct: 661  AGTGNKEAINLLEPMTNDPVNYVRQ 685


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 66,801,384
Number of extensions: 1627811
Number of successful extensions: 4588
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4581
Number of HSP's successfully gapped: 1
Length of query: 736
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 627
Effective length of database: 12,343,635
Effective search space: 7739459145
Effective search space used: 7739459145
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008194
         (2209 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001177966.1| 26S proteasome non-ATPase regulatory subunit...  1273   0.0  
Alignment   gi|NP_002798.2| 26S proteasome non-ATPase regulatory subunit 1 ...  1273   0.0  

>ref|NP_001177966.1| 26S proteasome non-ATPase regulatory subunit 1 isoform 2 [Homo
            sapiens].
          Length = 922

 Score = 1273 bits (3295), Expect = 0.0
 Identities = 646/685 (94%), Positives = 650/685 (94%)
 Frame = +1

Query: 154  MITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA 333
            MITSAAGIISLLDE+EPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA
Sbjct: 1    MITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA 60

Query: 334  ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE 513
            ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE
Sbjct: 61   ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE 120

Query: 514  GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS 693
            GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS
Sbjct: 121  GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS 180

Query: 694  LKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKED 873
            LKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKED
Sbjct: 181  LKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKED 240

Query: 874  NLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDSESMETE 1053
            NLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDS+SMETE
Sbjct: 241  NLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDSDSMETE 300

Query: 1054 EKTGSVLVGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV 1233
            EKT S  VGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV
Sbjct: 301  EKTSSAFVGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV 360

Query: 1234 RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEAL 1413
            RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEAL
Sbjct: 361  RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEAL 420

Query: 1414 QLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRHXXXXX 1593
            QLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRH     
Sbjct: 421  QLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRHGGSLG 480

Query: 1594 XXXXXXXXXRQDVYDLLKTNLYQDDXXXXXXXXXXXXXXXXXSKNAQAIEDMVGYAQETQ 1773
                     RQDVYDLLKTNLYQDD                 SKNAQAIEDMVGYAQETQ
Sbjct: 481  LGLAAMGTARQDVYDLLKTNLYQDDAVTGEAAGLALGLVMLGSKNAQAIEDMVGYAQETQ 540

Query: 1774 HEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIR 1953
            HEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIR
Sbjct: 541  HEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIR 600

Query: 1954 RLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICC 2133
            RLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICC
Sbjct: 601  RLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICC 660

Query: 2134 AGTGKQEAINLLEPMTDDPVNYVRQ 2208
            AGTG +EAINLLEPMT+DPVNYVRQ
Sbjct: 661  AGTGNKEAINLLEPMTNDPVNYVRQ 685


>ref|NP_002798.2| 26S proteasome non-ATPase regulatory subunit 1 isoform 1 [Homo
            sapiens].
          Length = 953

 Score = 1273 bits (3295), Expect = 0.0
 Identities = 646/685 (94%), Positives = 650/685 (94%)
 Frame = +1

Query: 154  MITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA 333
            MITSAAGIISLLDE+EPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA
Sbjct: 1    MITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA 60

Query: 334  ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE 513
            ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE
Sbjct: 61   ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE 120

Query: 514  GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS 693
            GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS
Sbjct: 121  GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS 180

Query: 694  LKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKED 873
            LKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKED
Sbjct: 181  LKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKED 240

Query: 874  NLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDSESMETE 1053
            NLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDS+SMETE
Sbjct: 241  NLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDSDSMETE 300

Query: 1054 EKTGSVLVGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV 1233
            EKT S  VGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV
Sbjct: 301  EKTSSAFVGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV 360

Query: 1234 RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEAL 1413
            RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEAL
Sbjct: 361  RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEAL 420

Query: 1414 QLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRHXXXXX 1593
            QLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRH     
Sbjct: 421  QLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRHGGSLG 480

Query: 1594 XXXXXXXXXRQDVYDLLKTNLYQDDXXXXXXXXXXXXXXXXXSKNAQAIEDMVGYAQETQ 1773
                     RQDVYDLLKTNLYQDD                 SKNAQAIEDMVGYAQETQ
Sbjct: 481  LGLAAMGTARQDVYDLLKTNLYQDDAVTGEAAGLALGLVMLGSKNAQAIEDMVGYAQETQ 540

Query: 1774 HEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIR 1953
            HEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIR
Sbjct: 541  HEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIR 600

Query: 1954 RLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICC 2133
            RLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICC
Sbjct: 601  RLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICC 660

Query: 2134 AGTGKQEAINLLEPMTDDPVNYVRQ 2208
            AGTG +EAINLLEPMT+DPVNYVRQ
Sbjct: 661  AGTGNKEAINLLEPMTNDPVNYVRQ 685


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 78,161,564
Number of extensions: 1908267
Number of successful extensions: 5369
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5362
Number of HSP's successfully gapped: 2
Length of query: 736
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 626
Effective length of database: 14,671,124
Effective search space: 9184123624
Effective search space used: 9184123624
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008194
         (2209 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr15                                                         458   e-126
gb|GL894014.2| Sus scrofa unplaced genomic scaffold ChrUScaf1899      367   2e-98

>Sscrofa_Chr15 
||          Length = 157681621

 Score =  458 bits (231), Expect = e-126
 Identities = 231/231 (100%)
 Strand = Plus / Plus

                                                                             
Query: 804       tcagtgcttaattttcttagatgatcctcaggccgtgagtgatatcttagaaaaactggt 863
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145544336 tcagtgcttaattttcttagatgatcctcaggccgtgagtgatatcttagaaaaactggt 145544395

                                                                             
Query: 864       aaaggaagacaacctcctgatggcttatcaaatttgttttgatttgtatgaaagtgctag 923
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145544396 aaaggaagacaacctcctgatggcttatcaaatttgttttgatttgtatgaaagtgctag 145544455

                                                                             
Query: 924       ccagcagtttttgtcatctgtaatccagaatcttcgaactgttggcactcctattgcttc 983
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145544456 ccagcagtttttgtcatctgtaatccagaatcttcgaactgttggcactcctattgcttc 145544515

                                                                    
Query: 984       tgtgcctggatctacaaatacgggtactgttccaggatcagagaaagacag 1034
                 |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145544516 tgtgcctggatctacaaatacgggtactgttccaggatcagagaaagacag 145544566



 Score =  396 bits (200), Expect = e-107
 Identities = 200/200 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1677      aggggaagcagctggcctggccctaggtttggtcatgttgggctctaaaaatgcccaggc 1736
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145553260 aggggaagcagctggcctggccctaggtttggtcatgttgggctctaaaaatgcccaggc 145553319

                                                                             
Query: 1737      tattgaggacatggtcggctatgcacaggaaactcaacatgagaagattctacgtggtct 1796
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145553320 tattgaggacatggtcggctatgcacaggaaactcaacatgagaagattctacgtggtct 145553379

                                                                             
Query: 1797      tgcagttggcattgcgttagtgatgtacgggaggatggaagaggctgatgctctcattga 1856
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145553380 tgcagttggcattgcgttagtgatgtacgggaggatggaagaggctgatgctctcattga 145553439

                                     
Query: 1857      gtcgctctgccgtgataagg 1876
                 ||||||||||||||||||||
Sbjct: 145553440 gtcgctctgccgtgataagg 145553459



 Score =  367 bits (185), Expect = 2e-98
 Identities = 201/209 (96%)
 Strand = Plus / Plus

                                                                             
Query: 455       tagcaaagtgcattgatcactacaccaaacaatgtgtggaaaatgcagatttgcctgaag 514
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145535982 tagcaaagtgcattgatcactacaccaaacaatgtgtggaaaatgcagatttgcctgaag 145536041

                                                                             
Query: 515       gagnnnnnnnnccaattgatcagagattggaaggtattgtgaataaaatgtttcagcgat 574
                 |||        |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145536042 gagaaaaaaaaccaattgatcagagattggaaggtattgtgaataaaatgtttcagcgat 145536101

                                                                             
Query: 575       gtctagatgatcacaaatacaaacaagctattggcattgctctggagacacgaaggctgg 634
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145536102 gtctagatgatcacaaatacaaacaagctattggcattgctctggagacacgaaggctgg 145536161

                                              
Query: 635       acgtctttgagaagactatacttgagtcg 663
                 |||||||||||||||||||||||||||||
Sbjct: 145536162 acgtctttgagaagactatacttgagtcg 145536190



 Score =  349 bits (176), Expect = 4e-93
 Identities = 176/176 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1391      agggtcatgagaaggaagcattacagttaatggcaacgtatcttcccaaggacacctctc 1450
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145550610 agggtcatgagaaggaagcattacagttaatggcaacgtatcttcccaaggacacctctc 145550669

                                                                             
Query: 1451      caggatcagcctatcaggaaggtggaggcctctatgcactaggtctcatccatgccaatc 1510
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145550670 caggatcagcctatcaggaaggtggaggcctctatgcactaggtctcatccatgccaatc 145550729

                                                                         
Query: 1511      atggtggggatataattgactatctgcttaaccagctcaagaatgcgagcaatgat 1566
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145550730 atggtggggatataattgactatctgcttaaccagctcaagaatgcgagcaatgat 145550785



 Score =  337 bits (170), Expect = 2e-89
 Identities = 170/170 (100%)
 Strand = Plus / Plus

                                                                             
Query: 288       agaagttttgtatgaagatgaaggtttccggagtcggcagtttgcagccttagtggcatc 347
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145531578 agaagttttgtatgaagatgaaggtttccggagtcggcagtttgcagccttagtggcatc 145531637

                                                                             
Query: 348       taaagtattttatcacctgggggcttttgaggagtctctgaattatgcacttggagcagg 407
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145531638 taaagtattttatcacctgggggcttttgaggagtctctgaattatgcacttggagcagg 145531697

                                                                   
Query: 408       tgacctcttcaatgtcaatgacaactctgaatatgtggagactattatag 457
                 ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145531698 tgacctcttcaatgtcaatgacaactctgaatatgtggagactattatag 145531747



 Score =  287 bits (145), Expect = 1e-74
 Identities = 145/145 (100%)
 Strand = Plus / Plus

                                                                             
Query: 663       gaatgatgtcccaggaatgctggcttatagcctcaagctctgcatgtctttaatgcagaa 722
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145539745 gaatgatgtcccaggaatgctggcttatagcctcaagctctgcatgtctttaatgcagaa 145539804

                                                                             
Query: 723       taaacagtttcggaataaagtactgagagttctggttaaaatctacatgaacttggagaa 782
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145539805 taaacagtttcggaataaagtactgagagttctggttaaaatctacatgaacttggagaa 145539864

                                          
Query: 783       acctgatttcatcaatgtttgtcag 807
                 |||||||||||||||||||||||||
Sbjct: 145539865 acctgatttcatcaatgtttgtcag 145539889



 Score =  260 bits (131), Expect = 3e-66
 Identities = 131/131 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1095      gagtccagagcccaaggaccagactttgaaaatgattaaaattttaagcggtgaaatggc 1154
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145547320 gagtccagagcccaaggaccagactttgaaaatgattaaaattttaagcggtgaaatggc 145547379

                                                                             
Query: 1155      tattgagctacatctgcagtttttaatacgaaacaataacacagatctcatgattctaaa 1214
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145547380 tattgagctacatctgcagtttttaatacgaaacaataacacagatctcatgattctaaa 145547439

                            
Query: 1215      aaacacaaagg 1225
                 |||||||||||
Sbjct: 145547440 aaacacaaagg 145547450



 Score =  226 bits (114), Expect = 4e-56
 Identities = 114/114 (100%)
 Strand = Plus / Plus

                                                                             
Query: 2034      caggacccctgaacagtgtcccagcgtggtttcattgttgtcagagagttacaatcctca 2093
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145589552 caggacccctgaacagtgtcccagcgtggtttcattgttgtcagagagttacaatcctca 145589611

                                                                       
Query: 2094      cgtgcgttacggagccgcaatggccctgggtatctgctgtgctggtacaggaaa 2147
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145589612 cgtgcgttacggagccgcaatggccctgggtatctgctgtgctggtacaggaaa 145589665



 Score =  224 bits (113), Expect = 2e-55
 Identities = 113/113 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1         gaagcgagccggcggcctgaggaggtgactgactgagcggggcaccggggcagccaggag 60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145524730 gaagcgagccggcggcctgaggaggtgactgactgagcggggcaccggggcagccaggag 145524789

                                                                      
Query: 61        acgcggcggagcgagcgggtcctgagctgacatatacacggcgcggccggggc 113
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145524790 acgcggcggagcgagcgggtcctgagctgacatatacacggcgcggccggggc 145524842



 Score =  224 bits (113), Expect = 2e-55
 Identities = 113/113 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1567      atcgttcgacatggtggcagtctgggccttggtttggcagccatggggaccgcccgccag 1626
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145552587 atcgttcgacatggtggcagtctgggccttggtttggcagccatggggaccgcccgccag 145552646

                                                                      
Query: 1627      gacgtgtatgatttgctgaagacaaacctttatcaggatgatgctgtcacagg 1679
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145552647 gacgtgtatgatttgctgaagacaaacctttatcaggatgatgctgtcacagg 145552699



 Score =  206 bits (104), Expect = 4e-50
 Identities = 104/104 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1874      aggatccaattcttcgacggtctggaatgtataccgtagccatggcttactgtggctcag 1933
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145554952 aggatccaattcttcgacggtctggaatgtataccgtagccatggcttactgtggctcag 145555011

                                                             
Query: 1934      gtaacaacaaggctattcgacgcctgctgcatgtcgctgtaagt 1977
                 ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145555012 gtaacaacaaggctattcgacgcctgctgcatgtcgctgtaagt 145555055



 Score =  172 bits (87), Expect = 5e-40
 Identities = 90/91 (98%)
 Strand = Plus / Plus

                                                                             
Query: 1223      aggatgcagtaaggaattctgtatgtcacacagcaaccgttatagcaaactcttttatgc 1282
                 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 145549512 aggatgcagtaaggaattctgtatgtcacacagctaccgttatagcaaactcttttatgc 145549571

                                                
Query: 1283      actgtgggactaccagtgaccagtttcttag 1313
                 |||||||||||||||||||||||||||||||
Sbjct: 145549572 actgtgggactaccagtgaccagtttcttag 145549602



 Score =  163 bits (82), Expect = 5e-37
 Identities = 82/82 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1312      agagataacttggaatggttagccagagccactaactgggcaaaatttacagccacagcc 1371
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145550059 agagataacttggaatggttagccagagccactaactgggcaaaatttacagccacagcc 145550118

                                       
Query: 1372      agtttgggtgtaattcataagg 1393
                 ||||||||||||||||||||||
Sbjct: 145550119 agtttgggtgtaattcataagg 145550140



 Score =  151 bits (76), Expect = 2e-33
 Identities = 76/76 (100%)
 Strand = Plus / Plus

                                                                             
Query: 212       aggaatttgcactacacaaattgaatgcagttgtcaatgacttctgggcagaaatttctg 271
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145531315 aggaatttgcactacacaaattgaatgcagttgtcaatgacttctgggcagaaatttctg 145531374

                                 
Query: 272       agtctgtagacaaaat 287
                 ||||||||||||||||
Sbjct: 145531375 agtctgtagacaaaat 145531390



 Score =  131 bits (66), Expect = 2e-27
 Identities = 66/66 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1972      gtaagtgatgttaacgatgatgtcaggagagcagcagtagaatcacttgggttcattctc 2031
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145557642 gtaagtgatgttaacgatgatgtcaggagagcagcagtagaatcacttgggttcattctc 145557701

                       
Query: 2032      ttcagg 2037
                 ||||||
Sbjct: 145557702 ttcagg 145557707



 Score =  125 bits (63), Expect = 1e-25
 Identities = 63/63 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1033      agtgaatcaatggaaacagaagaaaagacaggtagtgtacttgtaggaaagacaccagaa 1092
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145546344 agtgaatcaatggaaacagaagaaaagacaggtagtgtacttgtaggaaagacaccagaa 145546403

                    
Query: 1093      gcg 1095
                 |||
Sbjct: 145546404 gcg 145546406



 Score =  105 bits (53), Expect = 1e-19
 Identities = 59/61 (96%)
 Strand = Plus / Plus

                                                                             
Query: 2149      caggaagcaattaatttgttagaacccatgacggatgaccctgtgaactatgtgaggcaa 2208
                 |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 145594667 caggaagcaattaatttgttagaaccaatgacgaatgaccctgtgaactatgtgaggcaa 145594726

                  
Query: 2209      g 2209
                 |
Sbjct: 145594727 g 145594727



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 46/46 (100%)
 Strand = Plus / Plus

                                                               
Query: 169       gctggaattatttctcttctggatgaagaagaaccacagcttaagg 214
                 ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145529863 gctggaattatttctcttctggatgaagaagaaccacagcttaagg 145529908



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                               
Query: 140       tgcggggcgcagccatgatcacctcagccg 169
                 ||||||||||||||||||||||||||||||
Sbjct: 145524869 tgcggggcgcagccatgatcacctcagccg 145524898


>gb|GL894014.2| Sus scrofa unplaced genomic scaffold ChrUScaf1899
          Length = 15910

 Score =  367 bits (185), Expect = 2e-98
 Identities = 201/209 (96%)
 Strand = Plus / Minus

                                                                        
Query: 455  tagcaaagtgcattgatcactacaccaaacaatgtgtggaaaatgcagatttgcctgaag 514
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7419 tagcaaagtgcattgatcactacaccaaacaatgtgtggaaaatgcagatttgcctgaag 7360

                                                                        
Query: 515  gagnnnnnnnnccaattgatcagagattggaaggtattgtgaataaaatgtttcagcgat 574
            |||        |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7359 gagaaaaaaaaccaattgatcagagattggaaggtattgtgaataaaatgtttcagcgat 7300

                                                                        
Query: 575  gtctagatgatcacaaatacaaacaagctattggcattgctctggagacacgaaggctgg 634
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7299 gtctagatgatcacaaatacaaacaagctattggcattgctctggagacacgaaggctgg 7240

                                         
Query: 635  acgtctttgagaagactatacttgagtcg 663
            |||||||||||||||||||||||||||||
Sbjct: 7239 acgtctttgagaagactatacttgagtcg 7211



 Score =  337 bits (170), Expect = 2e-89
 Identities = 170/170 (100%)
 Strand = Plus / Minus

                                                                         
Query: 288   agaagttttgtatgaagatgaaggtttccggagtcggcagtttgcagccttagtggcatc 347
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11493 agaagttttgtatgaagatgaaggtttccggagtcggcagtttgcagccttagtggcatc 11434

                                                                         
Query: 348   taaagtattttatcacctgggggcttttgaggagtctctgaattatgcacttggagcagg 407
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11433 taaagtattttatcacctgggggcttttgaggagtctctgaattatgcacttggagcagg 11374

                                                               
Query: 408   tgacctcttcaatgtcaatgacaactctgaatatgtggagactattatag 457
             ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11373 tgacctcttcaatgtcaatgacaactctgaatatgtggagactattatag 11324



 Score =  287 bits (145), Expect = 1e-74
 Identities = 145/145 (100%)
 Strand = Plus / Minus

                                                                        
Query: 663  gaatgatgtcccaggaatgctggcttatagcctcaagctctgcatgtctttaatgcagaa 722
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4113 gaatgatgtcccaggaatgctggcttatagcctcaagctctgcatgtctttaatgcagaa 4054

                                                                        
Query: 723  taaacagtttcggaataaagtactgagagttctggttaaaatctacatgaacttggagaa 782
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4053 taaacagtttcggaataaagtactgagagttctggttaaaatctacatgaacttggagaa 3994

                                     
Query: 783  acctgatttcatcaatgtttgtcag 807
            |||||||||||||||||||||||||
Sbjct: 3993 acctgatttcatcaatgtttgtcag 3969



 Score =  151 bits (76), Expect = 2e-33
 Identities = 76/76 (100%)
 Strand = Plus / Minus

                                                                         
Query: 212   aggaatttgcactacacaaattgaatgcagttgtcaatgacttctgggcagaaatttctg 271
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11756 aggaatttgcactacacaaattgaatgcagttgtcaatgacttctgggcagaaatttctg 11697

                             
Query: 272   agtctgtagacaaaat 287
             ||||||||||||||||
Sbjct: 11696 agtctgtagacaaaat 11681



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 46/46 (100%)
 Strand = Plus / Minus

                                                           
Query: 169   gctggaattatttctcttctggatgaagaagaaccacagcttaagg 214
             ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12764 gctggaattatttctcttctggatgaagaagaaccacagcttaagg 12719


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 68,725,787
Number of extensions: 410
Number of successful extensions: 410
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 410
Number of HSP's successfully gapped: 26
Length of query: 2209
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2187
Effective length of database: 2,808,408,574
Effective search space: 6141989551338
Effective search space used: 6141989551338
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)