Animal-Genome cDNA 20110601C-008255


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008255
         (1026 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001181971.1| small subunit of serine palmitoyltransferase...   144   2e-34
Alignment   gi|NP_001104244.1| small subunit of serine palmitoyltransferase...    66   6e-11
Alignment   gi|XP_002705325.1| PREDICTED: androgen down regulated in mouse ...    66   6e-11

>ref|NP_001181971.1| small subunit of serine palmitoyltransferase A [Bos taurus].
          Length = 68

 Score =  144 bits (362), Expect = 2e-34
 Identities = 68/68 (100%), Positives = 68/68 (100%)
 Frame = +1

Query: 46  MALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHIMAI 225
           MALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHIMAI
Sbjct: 1   MALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHIMAI 60

Query: 226 LHYFEIVQ 249
           LHYFEIVQ
Sbjct: 61  LHYFEIVQ 68


>ref|NP_001104244.1| small subunit of serine palmitoyltransferase B [Bos taurus].
          Length = 76

 Score = 65.9 bits (159), Expect = 6e-11
 Identities = 26/64 (40%), Positives = 42/64 (65%)
 Frame = +1

Query: 46  MALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHIMAI 225
           M   R    +SW YYQY +++   +LEPWE+++FN+++++I  M +YT YVF+P HI   
Sbjct: 1   MDFKRVKDYLSWLYYQYQIISCCAVLEPWEQSMFNTIILTIFAMVVYTAYVFIPIHIRLA 60

Query: 226 LHYF 237
             +F
Sbjct: 61  WEFF 64


>ref|XP_002705325.1| PREDICTED: androgen down regulated in mouse prostate-like [Bos
           taurus].
          Length = 76

 Score = 65.9 bits (159), Expect = 6e-11
 Identities = 26/64 (40%), Positives = 42/64 (65%)
 Frame = +1

Query: 46  MALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHIMAI 225
           M   R    +SW YYQY +++   +LEPWE+++FN+++++I  M +YT YVF+P HI   
Sbjct: 1   MDFKRVKDYLSWLYYQYQIISCCAVLEPWEQSMFNTIILTIFAMVVYTAYVFIPIHIRLA 60

Query: 226 LHYF 237
             +F
Sbjct: 61  WEFF 64


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,134,862
Number of extensions: 762848
Number of successful extensions: 1987
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1986
Number of HSP's successfully gapped: 3
Length of query: 342
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 239
Effective length of database: 14,273,310
Effective search space: 3411321090
Effective search space used: 3411321090
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008255
         (1026 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done

 ***** No hits found ******


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,596,941
Number of extensions: 782100
Number of successful extensions: 1961
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 1961
Number of HSP's successfully gapped: 0
Length of query: 342
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 239
Effective length of database: 15,440,896
Effective search space: 3690374144
Effective search space used: 3690374144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008255
         (1026 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_001926508.1| PREDICTED: small subunit of serine palmitoyl...   175   4e-44

>ref|XP_001926508.1| PREDICTED: small subunit of serine palmitoyltransferase A-like [Sus
           scrofa].
          Length = 106

 Score =  175 bits (443), Expect = 4e-44
 Identities = 83/83 (100%), Positives = 83/83 (100%)
 Frame = +1

Query: 1   DRLTFSCNAGGGLSGMALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMA 180
           DRLTFSCNAGGGLSGMALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMA
Sbjct: 24  DRLTFSCNAGGGLSGMALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMA 83

Query: 181 LYTGYVFMPQHIMAILHYFEIVQ 249
           LYTGYVFMPQHIMAILHYFEIVQ
Sbjct: 84  LYTGYVFMPQHIMAILHYFEIVQ 106


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,250,465
Number of extensions: 486466
Number of successful extensions: 1273
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1272
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 242
Effective length of database: 8,854,232
Effective search space: 2142724144
Effective search space used: 2142724144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008255
         (1026 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_598815.2| small subunit of serine palmitoyltransferase A ...   147   2e-35
Alignment   gi|XP_899671.2| PREDICTED: small subunit of serine palmitoyltra...    96   5e-20
Alignment   gi|XP_918621.2| PREDICTED: small subunit of serine palmitoyltra...    96   5e-20
Alignment   gi|NP_001157682.1| small subunit of serine palmitoyltransferase...    65   9e-11
Alignment   gi|NP_598436.1| small subunit of serine palmitoyltransferase B ...    65   9e-11

>ref|NP_598815.2| small subunit of serine palmitoyltransferase A [Mus musculus].
          Length = 71

 Score =  147 bits (370), Expect = 2e-35
 Identities = 68/71 (95%), Positives = 71/71 (100%)
 Frame = +1

Query: 37  LSGMALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHI 216
           ++GMALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVS+VGMALYTGYVFMPQHI
Sbjct: 1   MAGMALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSVVGMALYTGYVFMPQHI 60

Query: 217 MAILHYFEIVQ 249
           MAILHYFEIVQ
Sbjct: 61  MAILHYFEIVQ 71


>ref|XP_899671.2| PREDICTED: small subunit of serine palmitoyltransferase A-like [Mus
           musculus].
          Length = 69

 Score = 95.9 bits (237), Expect = 5e-20
 Identities = 49/71 (69%), Positives = 58/71 (81%)
 Frame = +1

Query: 37  LSGMALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHI 216
           ++GMA+ RAWK MSW  YQYLLVT LYMLEP  +TVFN MLVS+V +ALYT YVF+PQ+ 
Sbjct: 1   MAGMAV-RAWKLMSWLDYQYLLVTVLYMLEPPVQTVFNPMLVSVV-VALYTSYVFVPQNS 58

Query: 217 MAILHYFEIVQ 249
           M ILHY E+VQ
Sbjct: 59  MTILHYLEVVQ 69


>ref|XP_918621.2| PREDICTED: small subunit of serine palmitoyltransferase A-like [Mus
           musculus].
          Length = 69

 Score = 95.9 bits (237), Expect = 5e-20
 Identities = 49/71 (69%), Positives = 58/71 (81%)
 Frame = +1

Query: 37  LSGMALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHI 216
           ++GMA+ RAWK MSW  YQYLLVT LYMLEP  +TVFN MLVS+V +ALYT YVF+PQ+ 
Sbjct: 1   MAGMAV-RAWKLMSWLDYQYLLVTVLYMLEPPVQTVFNPMLVSVV-VALYTSYVFVPQNS 58

Query: 217 MAILHYFEIVQ 249
           M ILHY E+VQ
Sbjct: 59  MTILHYLEVVQ 69


>ref|NP_001157682.1| small subunit of serine palmitoyltransferase B [Mus musculus].
          Length = 76

 Score = 65.1 bits (157), Expect = 9e-11
 Identities = 25/64 (39%), Positives = 42/64 (65%)
 Frame = +1

Query: 46  MALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHIMAI 225
           M   R  +  +W YYQY ++T   ++EPWE+++ N+++++IV M +YT YVF+P HI   
Sbjct: 1   MDFKRVKEYFAWLYYQYQIITCCAVMEPWEQSMLNTIILTIVAMVVYTAYVFIPIHIRLA 60

Query: 226 LHYF 237
             +F
Sbjct: 61  WEFF 64


>ref|NP_598436.1| small subunit of serine palmitoyltransferase B [Mus musculus].
          Length = 76

 Score = 65.1 bits (157), Expect = 9e-11
 Identities = 25/64 (39%), Positives = 42/64 (65%)
 Frame = +1

Query: 46  MALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHIMAI 225
           M   R  +  +W YYQY ++T   ++EPWE+++ N+++++IV M +YT YVF+P HI   
Sbjct: 1   MDFKRVKEYFAWLYYQYQIITCCAVMEPWEQSMLNTIILTIVAMVVYTAYVFIPIHIRLA 60

Query: 226 LHYF 237
             +F
Sbjct: 61  WEFF 64


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,216,598
Number of extensions: 671774
Number of successful extensions: 1753
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1750
Number of HSP's successfully gapped: 5
Length of query: 342
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 240
Effective length of database: 12,553,887
Effective search space: 3012932880
Effective search space used: 3012932880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008255
         (1026 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_612145.2| small subunit of serine palmitoyltransferase A ...   147   2e-35
Alignment   gi|NP_001035189.1| small subunit of serine palmitoyltransferase...    71   1e-12

>ref|NP_612145.2| small subunit of serine palmitoyltransferase A [Homo sapiens].
          Length = 71

 Score =  147 bits (371), Expect = 2e-35
 Identities = 69/71 (97%), Positives = 71/71 (100%)
 Frame = +1

Query: 37  LSGMALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHI 216
           ++GMALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHI
Sbjct: 1   MAGMALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHI 60

Query: 217 MAILHYFEIVQ 249
           MAILHYFEIVQ
Sbjct: 61  MAILHYFEIVQ 71


>ref|NP_001035189.1| small subunit of serine palmitoyltransferase B [Homo sapiens].
          Length = 76

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 29/64 (45%), Positives = 44/64 (68%)
 Frame = +1

Query: 46  MALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHIMAI 225
           M L R  +  SW YYQY +++   +LEPWER++FN++L++I+ M +YT YVF+P HI   
Sbjct: 1   MDLRRVKEYFSWLYYQYQIISCCAVLEPWERSMFNTILLTIIAMVVYTAYVFIPIHIRLA 60

Query: 226 LHYF 237
             +F
Sbjct: 61  WEFF 64


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,069,044
Number of extensions: 783530
Number of successful extensions: 2038
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2036
Number of HSP's successfully gapped: 2
Length of query: 342
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 239
Effective length of database: 14,901,872
Effective search space: 3561547408
Effective search space used: 3561547408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008255
         (1026 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr07                                                        1661   0.0  

>Sscrofa_Chr07 
||          Length = 134764511

 Score = 1661 bits (838), Expect = 0.0
 Identities = 876/882 (99%), Gaps = 5/882 (0%)
 Strand = Plus / Plus

                                                                            
Query: 149      attccatgctggtttccatcgtggggatggccctgtacacaggatatgtcttcatgcctc 208
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70112437 attccatgctggtttccatcgtggggatggccctgtacacaggatatgtcttcatgcctc 70112496

                                                                            
Query: 209      agcacatcatggcgatactgcactactttgaaattgtacaatgaccaggatgtgaccgga 268
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70112497 agcacatcatggcgatactgcactactttgaaattgtacaatgaccaggatgtgaccgga 70112556

                                                                            
Query: 269      atcaagaggttccttagggaagagccaccgtctgaagttggaatgagacctcattcaaat 328
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70112557 atcaagaggttccttagggaagagccaccgtctgaagttggaatgagacctcattcaaat 70112616

                                                                            
Query: 329      gtcgtaagaaactcttctagatgtcaacataatcaatcctacaaatataaagactaaaat 388
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70112617 gtcgtaagaaactcttctagatgtcaacataatcaatcctacaaatataaagactaaaat 70112676

                                                                            
Query: 389      tcatgagtagaacaggaaagcaatcctgactcatgtgttgtgttctttatttttaatttt 448
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70112677 tcatgagtagaacaggaaagcaatcctgactcatgtgttgtgttctttatttttaatttt 70112736

                                                                            
Query: 449      aaaa-ggagctcttgtatagtagtttttgtctattttaacattgtagtcatttgtacttt 507
                |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70112737 aaaaaggagctcttgtatagtagtttttgtctattttaacattgtagtcatttgtacttt 70112796

                                                                            
Query: 508      gatatcagtattttcttaacctttgtgactgtttcaatattaccctgtgaaagcttttct 567
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70112797 gatatcagtattttcttaacctttgtgactgtttcaatattaccctgtgaaagcttttct 70112856

                                                                            
Query: 568      taatgtaacaactttgagtacattttaattgccttctatttctaaaacccaaagtcatta 627
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70112857 taatgtaacaactttgagtacattttaattgccttctatttctaaaacccaaagtcatta 70112916

                                                                            
Query: 628      gttgggctctaccgttctttcttgctattgtacggcaaacatatctgcctggatatattt 687
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70112917 gttgggctctaccgttctttcttgctattgtacggcaaacatatctgcctggatatattt 70112976

                                                                            
Query: 688      ctactcttgaccaaagttttgtaagaaaaattcaagattttgggcagggggctggggagg 747
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70112977 ctactcttgaccaaagttttgtaagaaaaattcaagattttgggcagggggctggggagg 70113036

                                                                            
Query: 748      gaggatattttactgagaactatttacaaaagacttatctgtaagtttgaactcaggagt 807
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70113037 gaggatattttactgagaactatttacaaaagacttatctgtaagtttgaactcaggagt 70113096

                                                                            
Query: 808      acagttttagctatctagactctactctttaacagcttttgctttaaaactattaaagtg 867
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70113097 acagttttagctatctagactctactctttaacagcttttgctttaaaactattaaagtg 70113156

                                                                            
Query: 868      tttcttaacaatgaaaaagaaagatcttgctaaagtt-aaataaggaacatttcaccttt 926
                ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 70113157 tttcttaacaatgaaaaagaaagatcttgctaaagttaaaataaggaacatttcaccttt 70113216

                                                                            
Query: 927      taaatatttaattcttgtgtggactcatttccag-aaatttttgtgatgattctttgtga 985
                |||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||
Sbjct: 70113217 taaatatttaattcttgtgtggactcatttccagaaaattttggtgatgattc-ttgtga 70113275

                                                          
Query: 986      c-aatgatggttaagtagcattattatgtaatgcttagtact 1026
                | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 70113276 caaatgatggttaagtagcattattatgtaatgcttagtact 70113317



 Score =  285 bits (144), Expect = 2e-74
 Identities = 147/148 (99%)
 Strand = Plus / Plus

                                                                            
Query: 1        gacagactgacgttcagctgcaacgcgggtggcggtttgtccgggatggcgctggcgcgg 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70090687 gacagactgacgttcagctgcaacgcgggtggcggtttgtccgggatggcgctggcgcgg 70090746

                                                                            
Query: 61       gcctggaagcaaatgtcgtggttctactaccagtacctgctggtcacggcgctctacatg 120
                ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70090747 gcctggaagcaaatgtcctggttctactaccagtacctgctggtcacggcgctctacatg 70090806

                                            
Query: 121      ctggagccgtgggagcggactgtgttca 148
                ||||||||||||||||||||||||||||
Sbjct: 70090807 ctggagccgtgggagcggactgtgttca 70090834


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 39,130,930
Number of extensions: 604
Number of successful extensions: 604
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 601
Number of HSP's successfully gapped: 2
Length of query: 1026
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1005
Effective length of database: 2,808,413,156
Effective search space: 2822455221780
Effective search space used: 2822455221780
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)