Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008255
(1026 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001181971.1| small subunit of serine palmitoyltransferase... 144 2e-34
Alignment gi|NP_001104244.1| small subunit of serine palmitoyltransferase... 66 6e-11
Alignment gi|XP_002705325.1| PREDICTED: androgen down regulated in mouse ... 66 6e-11
>ref|NP_001181971.1| small subunit of serine palmitoyltransferase A [Bos taurus].
Length = 68
Score = 144 bits (362), Expect = 2e-34
Identities = 68/68 (100%), Positives = 68/68 (100%)
Frame = +1
Query: 46 MALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHIMAI 225
MALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHIMAI
Sbjct: 1 MALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHIMAI 60
Query: 226 LHYFEIVQ 249
LHYFEIVQ
Sbjct: 61 LHYFEIVQ 68
>ref|NP_001104244.1| small subunit of serine palmitoyltransferase B [Bos taurus].
Length = 76
Score = 65.9 bits (159), Expect = 6e-11
Identities = 26/64 (40%), Positives = 42/64 (65%)
Frame = +1
Query: 46 MALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHIMAI 225
M R +SW YYQY +++ +LEPWE+++FN+++++I M +YT YVF+P HI
Sbjct: 1 MDFKRVKDYLSWLYYQYQIISCCAVLEPWEQSMFNTIILTIFAMVVYTAYVFIPIHIRLA 60
Query: 226 LHYF 237
+F
Sbjct: 61 WEFF 64
>ref|XP_002705325.1| PREDICTED: androgen down regulated in mouse prostate-like [Bos
taurus].
Length = 76
Score = 65.9 bits (159), Expect = 6e-11
Identities = 26/64 (40%), Positives = 42/64 (65%)
Frame = +1
Query: 46 MALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHIMAI 225
M R +SW YYQY +++ +LEPWE+++FN+++++I M +YT YVF+P HI
Sbjct: 1 MDFKRVKDYLSWLYYQYQIISCCAVLEPWEQSMFNTIILTIFAMVVYTAYVFIPIHIRLA 60
Query: 226 LHYF 237
+F
Sbjct: 61 WEFF 64
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,134,862
Number of extensions: 762848
Number of successful extensions: 1987
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1986
Number of HSP's successfully gapped: 3
Length of query: 342
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 239
Effective length of database: 14,273,310
Effective search space: 3411321090
Effective search space used: 3411321090
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008255
(1026 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,596,941
Number of extensions: 782100
Number of successful extensions: 1961
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 1961
Number of HSP's successfully gapped: 0
Length of query: 342
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 239
Effective length of database: 15,440,896
Effective search space: 3690374144
Effective search space used: 3690374144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008255
(1026 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001926508.1| PREDICTED: small subunit of serine palmitoyl... 175 4e-44
>ref|XP_001926508.1| PREDICTED: small subunit of serine palmitoyltransferase A-like [Sus
scrofa].
Length = 106
Score = 175 bits (443), Expect = 4e-44
Identities = 83/83 (100%), Positives = 83/83 (100%)
Frame = +1
Query: 1 DRLTFSCNAGGGLSGMALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMA 180
DRLTFSCNAGGGLSGMALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMA
Sbjct: 24 DRLTFSCNAGGGLSGMALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMA 83
Query: 181 LYTGYVFMPQHIMAILHYFEIVQ 249
LYTGYVFMPQHIMAILHYFEIVQ
Sbjct: 84 LYTGYVFMPQHIMAILHYFEIVQ 106
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,250,465
Number of extensions: 486466
Number of successful extensions: 1273
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1272
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 242
Effective length of database: 8,854,232
Effective search space: 2142724144
Effective search space used: 2142724144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008255
(1026 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598815.2| small subunit of serine palmitoyltransferase A ... 147 2e-35
Alignment gi|XP_899671.2| PREDICTED: small subunit of serine palmitoyltra... 96 5e-20
Alignment gi|XP_918621.2| PREDICTED: small subunit of serine palmitoyltra... 96 5e-20
Alignment gi|NP_001157682.1| small subunit of serine palmitoyltransferase... 65 9e-11
Alignment gi|NP_598436.1| small subunit of serine palmitoyltransferase B ... 65 9e-11
>ref|NP_598815.2| small subunit of serine palmitoyltransferase A [Mus musculus].
Length = 71
Score = 147 bits (370), Expect = 2e-35
Identities = 68/71 (95%), Positives = 71/71 (100%)
Frame = +1
Query: 37 LSGMALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHI 216
++GMALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVS+VGMALYTGYVFMPQHI
Sbjct: 1 MAGMALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSVVGMALYTGYVFMPQHI 60
Query: 217 MAILHYFEIVQ 249
MAILHYFEIVQ
Sbjct: 61 MAILHYFEIVQ 71
>ref|XP_899671.2| PREDICTED: small subunit of serine palmitoyltransferase A-like [Mus
musculus].
Length = 69
Score = 95.9 bits (237), Expect = 5e-20
Identities = 49/71 (69%), Positives = 58/71 (81%)
Frame = +1
Query: 37 LSGMALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHI 216
++GMA+ RAWK MSW YQYLLVT LYMLEP +TVFN MLVS+V +ALYT YVF+PQ+
Sbjct: 1 MAGMAV-RAWKLMSWLDYQYLLVTVLYMLEPPVQTVFNPMLVSVV-VALYTSYVFVPQNS 58
Query: 217 MAILHYFEIVQ 249
M ILHY E+VQ
Sbjct: 59 MTILHYLEVVQ 69
>ref|XP_918621.2| PREDICTED: small subunit of serine palmitoyltransferase A-like [Mus
musculus].
Length = 69
Score = 95.9 bits (237), Expect = 5e-20
Identities = 49/71 (69%), Positives = 58/71 (81%)
Frame = +1
Query: 37 LSGMALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHI 216
++GMA+ RAWK MSW YQYLLVT LYMLEP +TVFN MLVS+V +ALYT YVF+PQ+
Sbjct: 1 MAGMAV-RAWKLMSWLDYQYLLVTVLYMLEPPVQTVFNPMLVSVV-VALYTSYVFVPQNS 58
Query: 217 MAILHYFEIVQ 249
M ILHY E+VQ
Sbjct: 59 MTILHYLEVVQ 69
>ref|NP_001157682.1| small subunit of serine palmitoyltransferase B [Mus musculus].
Length = 76
Score = 65.1 bits (157), Expect = 9e-11
Identities = 25/64 (39%), Positives = 42/64 (65%)
Frame = +1
Query: 46 MALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHIMAI 225
M R + +W YYQY ++T ++EPWE+++ N+++++IV M +YT YVF+P HI
Sbjct: 1 MDFKRVKEYFAWLYYQYQIITCCAVMEPWEQSMLNTIILTIVAMVVYTAYVFIPIHIRLA 60
Query: 226 LHYF 237
+F
Sbjct: 61 WEFF 64
>ref|NP_598436.1| small subunit of serine palmitoyltransferase B [Mus musculus].
Length = 76
Score = 65.1 bits (157), Expect = 9e-11
Identities = 25/64 (39%), Positives = 42/64 (65%)
Frame = +1
Query: 46 MALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHIMAI 225
M R + +W YYQY ++T ++EPWE+++ N+++++IV M +YT YVF+P HI
Sbjct: 1 MDFKRVKEYFAWLYYQYQIITCCAVMEPWEQSMLNTIILTIVAMVVYTAYVFIPIHIRLA 60
Query: 226 LHYF 237
+F
Sbjct: 61 WEFF 64
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,216,598
Number of extensions: 671774
Number of successful extensions: 1753
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1750
Number of HSP's successfully gapped: 5
Length of query: 342
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 240
Effective length of database: 12,553,887
Effective search space: 3012932880
Effective search space used: 3012932880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008255
(1026 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_612145.2| small subunit of serine palmitoyltransferase A ... 147 2e-35
Alignment gi|NP_001035189.1| small subunit of serine palmitoyltransferase... 71 1e-12
>ref|NP_612145.2| small subunit of serine palmitoyltransferase A [Homo sapiens].
Length = 71
Score = 147 bits (371), Expect = 2e-35
Identities = 69/71 (97%), Positives = 71/71 (100%)
Frame = +1
Query: 37 LSGMALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHI 216
++GMALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHI
Sbjct: 1 MAGMALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHI 60
Query: 217 MAILHYFEIVQ 249
MAILHYFEIVQ
Sbjct: 61 MAILHYFEIVQ 71
>ref|NP_001035189.1| small subunit of serine palmitoyltransferase B [Homo sapiens].
Length = 76
Score = 71.2 bits (173), Expect = 1e-12
Identities = 29/64 (45%), Positives = 44/64 (68%)
Frame = +1
Query: 46 MALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHIMAI 225
M L R + SW YYQY +++ +LEPWER++FN++L++I+ M +YT YVF+P HI
Sbjct: 1 MDLRRVKEYFSWLYYQYQIISCCAVLEPWERSMFNTILLTIIAMVVYTAYVFIPIHIRLA 60
Query: 226 LHYF 237
+F
Sbjct: 61 WEFF 64
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,069,044
Number of extensions: 783530
Number of successful extensions: 2038
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2036
Number of HSP's successfully gapped: 2
Length of query: 342
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 239
Effective length of database: 14,901,872
Effective search space: 3561547408
Effective search space used: 3561547408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008255
(1026 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 1661 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 1661 bits (838), Expect = 0.0
Identities = 876/882 (99%), Gaps = 5/882 (0%)
Strand = Plus / Plus
Query: 149 attccatgctggtttccatcgtggggatggccctgtacacaggatatgtcttcatgcctc 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70112437 attccatgctggtttccatcgtggggatggccctgtacacaggatatgtcttcatgcctc 70112496
Query: 209 agcacatcatggcgatactgcactactttgaaattgtacaatgaccaggatgtgaccgga 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70112497 agcacatcatggcgatactgcactactttgaaattgtacaatgaccaggatgtgaccgga 70112556
Query: 269 atcaagaggttccttagggaagagccaccgtctgaagttggaatgagacctcattcaaat 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70112557 atcaagaggttccttagggaagagccaccgtctgaagttggaatgagacctcattcaaat 70112616
Query: 329 gtcgtaagaaactcttctagatgtcaacataatcaatcctacaaatataaagactaaaat 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70112617 gtcgtaagaaactcttctagatgtcaacataatcaatcctacaaatataaagactaaaat 70112676
Query: 389 tcatgagtagaacaggaaagcaatcctgactcatgtgttgtgttctttatttttaatttt 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70112677 tcatgagtagaacaggaaagcaatcctgactcatgtgttgtgttctttatttttaatttt 70112736
Query: 449 aaaa-ggagctcttgtatagtagtttttgtctattttaacattgtagtcatttgtacttt 507
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70112737 aaaaaggagctcttgtatagtagtttttgtctattttaacattgtagtcatttgtacttt 70112796
Query: 508 gatatcagtattttcttaacctttgtgactgtttcaatattaccctgtgaaagcttttct 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70112797 gatatcagtattttcttaacctttgtgactgtttcaatattaccctgtgaaagcttttct 70112856
Query: 568 taatgtaacaactttgagtacattttaattgccttctatttctaaaacccaaagtcatta 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70112857 taatgtaacaactttgagtacattttaattgccttctatttctaaaacccaaagtcatta 70112916
Query: 628 gttgggctctaccgttctttcttgctattgtacggcaaacatatctgcctggatatattt 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70112917 gttgggctctaccgttctttcttgctattgtacggcaaacatatctgcctggatatattt 70112976
Query: 688 ctactcttgaccaaagttttgtaagaaaaattcaagattttgggcagggggctggggagg 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70112977 ctactcttgaccaaagttttgtaagaaaaattcaagattttgggcagggggctggggagg 70113036
Query: 748 gaggatattttactgagaactatttacaaaagacttatctgtaagtttgaactcaggagt 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70113037 gaggatattttactgagaactatttacaaaagacttatctgtaagtttgaactcaggagt 70113096
Query: 808 acagttttagctatctagactctactctttaacagcttttgctttaaaactattaaagtg 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70113097 acagttttagctatctagactctactctttaacagcttttgctttaaaactattaaagtg 70113156
Query: 868 tttcttaacaatgaaaaagaaagatcttgctaaagtt-aaataaggaacatttcaccttt 926
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 70113157 tttcttaacaatgaaaaagaaagatcttgctaaagttaaaataaggaacatttcaccttt 70113216
Query: 927 taaatatttaattcttgtgtggactcatttccag-aaatttttgtgatgattctttgtga 985
|||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||
Sbjct: 70113217 taaatatttaattcttgtgtggactcatttccagaaaattttggtgatgattc-ttgtga 70113275
Query: 986 c-aatgatggttaagtagcattattatgtaatgcttagtact 1026
| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 70113276 caaatgatggttaagtagcattattatgtaatgcttagtact 70113317
Score = 285 bits (144), Expect = 2e-74
Identities = 147/148 (99%)
Strand = Plus / Plus
Query: 1 gacagactgacgttcagctgcaacgcgggtggcggtttgtccgggatggcgctggcgcgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70090687 gacagactgacgttcagctgcaacgcgggtggcggtttgtccgggatggcgctggcgcgg 70090746
Query: 61 gcctggaagcaaatgtcgtggttctactaccagtacctgctggtcacggcgctctacatg 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70090747 gcctggaagcaaatgtcctggttctactaccagtacctgctggtcacggcgctctacatg 70090806
Query: 121 ctggagccgtgggagcggactgtgttca 148
||||||||||||||||||||||||||||
Sbjct: 70090807 ctggagccgtgggagcggactgtgttca 70090834
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 39,130,930
Number of extensions: 604
Number of successful extensions: 604
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 601
Number of HSP's successfully gapped: 2
Length of query: 1026
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1005
Effective length of database: 2,808,413,156
Effective search space: 2822455221780
Effective search space used: 2822455221780
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)