Animal-Genome cDNA 20110601C-008329


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008329
         (959 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001033186.1| WD repeat-containing protein 61 [Bos taurus].     546   e-155
Alignment   gi|XP_002707838.1| PREDICTED: PCAF associated factor 65 beta-li...   105   8e-23
Alignment   gi|XP_587553.3| PREDICTED: PCAF associated factor 65 beta, part...   105   8e-23
Alignment   gi|NP_001069398.1| WD repeat-containing protein 69 [Bos taurus].     104   1e-22
Alignment   gi|NP_001098945.1| WD repeat-containing protein 5 [Bos taurus].      102   7e-22
Alignment   gi|NP_001095379.1| katanin p80 WD40-containing subunit B1 [Bos ...   101   1e-21
Alignment   gi|XP_002700435.1| PREDICTED: TAF5-like RNA polymerase II, p300...    96   6e-20
Alignment   gi|XP_603152.3| PREDICTED: PCAF associated factor 65 beta [Bos ...    96   6e-20
Alignment   gi|NP_001014887.1| notchless protein homolog 1 [Bos taurus].          94   1e-19
Alignment   gi|NP_001157418.1| WD repeat-containing protein 38 [Bos taurus].      93   3e-19

>ref|NP_001033186.1| WD repeat-containing protein 61 [Bos taurus].
          Length = 305

 Score =  546 bits (1407), Expect = e-155
 Identities = 267/282 (94%), Positives = 268/282 (95%)
 Frame = +2

Query: 113 MTNQYSILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSL 292
           MTNQYSILFKQEQAHDDAIWSVAWG+NKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSL
Sbjct: 1   MTNQYSILFKQEQAHDDAIWSVAWGSNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSL 60

Query: 293 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 472
           EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY
Sbjct: 61  EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 120

Query: 473 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 652
           LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG
Sbjct: 121 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 180

Query: 653 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 832
           KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF
Sbjct: 181 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 240

Query: 833 CPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQDQVWGVKY 958
           CPDDTHF              GTRTCVHTFFDHQDQVWGVKY
Sbjct: 241 CPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKY 282



 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 49/196 (25%), Positives = 96/196 (48%)
 Frame = +2

Query: 179 AWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASS 358
           AW      +S+ + TG+    V ++     K +  +SL+     ++S+  S      AS 
Sbjct: 109 AWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE--YSLDTRGKFILSIAYSPDGKYLASG 166

Query: 359 SLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY 538
           ++D  I ++D+  GK + +++   +   +L FSPDSQ L T +  G + I+ V+      
Sbjct: 167 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG 226

Query: 539 SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS 718
           +L     ++L++A+ PD  +  S + D  + ++D+ T   +HT   H   +  + ++ + 
Sbjct: 227 TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNG 286

Query: 719 QLLVTASDDGYIKIYD 766
             +V+  DD  I IYD
Sbjct: 287 SKIVSVGDDQEIHIYD 302


>ref|XP_002707838.1| PREDICTED: PCAF associated factor 65 beta-like [Bos taurus].
          Length = 589

 Score =  105 bits (261), Expect = 8e-23
 Identities = 65/191 (34%), Positives = 98/191 (51%), Gaps = 11/191 (5%)
 Frame = +2

Query: 293 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 472
           +GH   V  +DIS      AS+S D   RLW  +    ++       D   + F P+S Y
Sbjct: 381 QGHAYPVWDLDISPHSLYFASASHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNY 440

Query: 473 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 652
           LATG+    V ++  + G            +LS+A+SP+GKYLAS   D  + ++D+A+G
Sbjct: 441 LATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASG 500

Query: 653 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN-----------LAGTLS 799
            L   L GH   I SLTFSPDS L+ +AS D  ++++D++ ++           L G  +
Sbjct: 501 TLYKELRGHTDNITSLTFSPDSSLVASASMDNSVRVWDIRSSHCSTPADGSSSELVGVYT 560

Query: 800 GHASWVLNVAF 832
           G  S VL+V F
Sbjct: 561 GQMSNVLSVQF 571



 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 3/168 (1%)
 Frame = +2

Query: 353 SSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 532
           S S D  IR WDL +              W L  SP S Y A+ +H     ++  +   +
Sbjct: 359 SCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPHSLYFASASHDRTARLWSFD---R 415

Query: 533 EYSLDTRGKFILSI---AYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT 703
            Y L      +  +    + P+  YLA+G+ D  + ++    G  +    GH  P+ SL 
Sbjct: 416 TYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLSLA 475

Query: 704 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDT 847
           FSP+ + L +A +D  +K++D+    L   L GH   + ++ F PD +
Sbjct: 476 FSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSS 523



 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 31/107 (28%), Positives = 53/107 (49%)
 Frame = +2

Query: 203 NSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 382
           NS  + TGS D  V++W  +       ++  GH+  V+S+  S      AS+  D  ++L
Sbjct: 437 NSNYLATGSTDKTVRLWSTQQGNSVRLFT--GHRGPVLSLAFSPNGKYLASAGEDQRLKL 494

Query: 383 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES 523
           WDL +G   K +     +  +L FSPDS  +A+ +    V ++ + S
Sbjct: 495 WDLASGTLYKELRGHTDNITSLTFSPDSSLVASASMDNSVRVWDIRS 541


>ref|XP_587553.3| PREDICTED: PCAF associated factor 65 beta, partial [Bos taurus].
          Length = 265

 Score =  105 bits (261), Expect = 8e-23
 Identities = 65/191 (34%), Positives = 98/191 (51%), Gaps = 11/191 (5%)
 Frame = +2

Query: 293 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 472
           +GH   V  +DIS      AS+S D   RLW  +    ++       D   + F P+S Y
Sbjct: 57  QGHAYPVWDLDISPHSLYFASASHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNY 116

Query: 473 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 652
           LATG+    V ++  + G            +LS+A+SP+GKYLAS   D  + ++D+A+G
Sbjct: 117 LATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASG 176

Query: 653 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN-----------LAGTLS 799
            L   L GH   I SLTFSPDS L+ +AS D  ++++D++ ++           L G  +
Sbjct: 177 TLYKELRGHTDNITSLTFSPDSSLVASASMDNSVRVWDIRSSHCSTPADGSSSELVGVYT 236

Query: 800 GHASWVLNVAF 832
           G  S VL+V F
Sbjct: 237 GQMSNVLSVQF 247



 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 3/168 (1%)
 Frame = +2

Query: 353 SSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 532
           S S D  IR WDL +              W L  SP S Y A+ +H     ++  +   +
Sbjct: 35  SCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPHSLYFASASHDRTARLWSFD---R 91

Query: 533 EYSLDTRGKFILSI---AYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT 703
            Y L      +  +    + P+  YLA+G+ D  + ++    G  +    GH  P+ SL 
Sbjct: 92  TYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLSLA 151

Query: 704 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDT 847
           FSP+ + L +A +D  +K++D+    L   L GH   + ++ F PD +
Sbjct: 152 FSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSS 199



 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 31/107 (28%), Positives = 53/107 (49%)
 Frame = +2

Query: 203 NSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 382
           NS  + TGS D  V++W  +       ++  GH+  V+S+  S      AS+  D  ++L
Sbjct: 113 NSNYLATGSTDKTVRLWSTQQGNSVRLFT--GHRGPVLSLAFSPNGKYLASAGEDQRLKL 170

Query: 383 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES 523
           WDL +G   K +     +  +L FSPDS  +A+ +    V ++ + S
Sbjct: 171 WDLASGTLYKELRGHTDNITSLTFSPDSSLVASASMDNSVRVWDIRS 217


>ref|NP_001069398.1| WD repeat-containing protein 69 [Bos taurus].
          Length = 415

 Score =  104 bits (259), Expect = 1e-22
 Identities = 72/290 (24%), Positives = 137/290 (47%), Gaps = 2/290 (0%)
 Frame = +2

Query: 95  SSLGKEMTNQYSILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRD-EK 271
           + LG+   +++  LFK  +AH   + +VA      ++    +TGS D   K+W     E+
Sbjct: 72  NKLGQHSNHKF-YLFKVLRAHILPLTNVALN----KSGSCFITGSYDRTCKLWDTASGEE 126

Query: 272 LDLQWSLEGHQLGVVSVDISHTL-PIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTL 448
           L    +LEGH+  V ++  ++      A+ S D   +LW +E GK   +      +   L
Sbjct: 127 LH---TLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCL 183

Query: 449 AFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGII 628
           +F+P S  +ATG+      ++ ++SG++ ++L      I+S++++  G  + +G+ D  +
Sbjct: 184 SFNPQSTLVATGSMDTTAKLWDIQSGEEVFTLTGHSAEIISLSFNTSGNRIITGSFDHTV 243

Query: 629 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 808
            +++  TG+ ++TL GH   I S  F+ D  L++T S D   K++D  +     TL+GH 
Sbjct: 244 TVWEADTGRKVYTLIGHCAEISSAVFNWDCSLILTGSMDKTCKLWDAVNGKCVATLTGHD 303

Query: 809 SWVLNVAFCPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQDQVWGVKY 958
             +L+  F                      TR CV     H+ ++  + +
Sbjct: 304 DEILDSCFDYTGKLIATASADGTARIFSAATRECVTKLEGHEGEISKISF 353



 Score = 99.8 bits (247), Expect = 3e-21
 Identities = 58/270 (21%), Positives = 117/270 (43%)
 Frame = +2

Query: 149 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDI 328
           + H + ++++A+        + + TGS D   K+W     K     +  GH   +V +  
Sbjct: 131 EGHRNVVYAIAFNN---PYGDKIATGSFDKTCKLWSVETGKC--YHTFRGHTAEIVCLSF 185

Query: 329 SHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNI 508
           +    + A+ S+D   +LWD+++G+++ ++     +  +L+F+     + TG+    V +
Sbjct: 186 NPQSTLVATGSMDTTAKLWDIQSGEEVFTLTGHSAEIISLSFNTSGNRIITGSFDHTVTV 245

Query: 509 FGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMP 688
           +  ++G+K Y+L      I S  ++ D   + +G++D    ++D   GK + TL GH   
Sbjct: 246 WEADTGRKVYTLIGHCAEISSAVFNWDCSLILTGSMDKTCKLWDAVNGKCVATLTGHDDE 305

Query: 689 IRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFXXXXX 868
           I    F    +L+ TAS DG  +I+          L GH   +  ++F P          
Sbjct: 306 ILDSCFDYTGKLIATASADGTARIFSAATRECVTKLEGHEGEISKISFNPQGNRLLTGSS 365

Query: 869 XXXXXXXXXGTRTCVHTFFDHQDQVWGVKY 958
                     T  C+     H D+++   +
Sbjct: 366 DKTARIWDAQTGQCLQVLEGHTDEIFSCAF 395



 Score = 79.0 bits (193), Expect = 6e-15
 Identities = 53/203 (26%), Positives = 92/203 (45%)
 Frame = +2

Query: 155 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISH 334
           H   I S+++ T+       ++TGS D  V VW+    +    ++L GH   + S   + 
Sbjct: 218 HSAEIISLSFNTS----GNRIITGSFDHTVTVWEADTGRK--VYTLIGHCAEISSAVFNW 271

Query: 335 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 514
              +  + S+D   +LWD  NGK + ++     +     F    + +AT +  G   IF 
Sbjct: 272 DCSLILTGSMDKTCKLWDAVNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFS 331

Query: 515 VESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIR 694
             + +    L+     I  I+++P G  L +G+ D    I+D  TG+ L  LEGH   I 
Sbjct: 332 AATRECVTKLEGHEGEISKISFNPQGNRLLTGSSDKTARIWDAQTGQCLQVLEGHTDEIF 391

Query: 695 SLTFSPDSQLLVTASDDGYIKIY 763
           S  F+    +++T S D   +I+
Sbjct: 392 SCAFNYKGDIIITGSKDNTCRIW 414


>ref|NP_001098945.1| WD repeat-containing protein 5 [Bos taurus].
          Length = 334

 Score =  102 bits (253), Expect = 7e-22
 Identities = 60/218 (27%), Positives = 113/218 (51%), Gaps = 1/218 (0%)
 Frame = +2

Query: 155 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISH 334
           H  A+ SV +  N     E + + S D L+K+W   D K +   ++ GH+LG+  V  S 
Sbjct: 44  HTKAVSSVKFSPN----GEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSS 97

Query: 335 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 514
              +  S+S D  +++WD+ +GK +K++       +   F+P S  + +G+    V I+ 
Sbjct: 98  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 157

Query: 515 VESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL-EGHAMPI 691
           V++GK   +L      + ++ ++ DG  + S + DG+  I+D A+G+ L TL +    P+
Sbjct: 158 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 217

Query: 692 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH 805
             + FSP+ + ++ A+ D  +K++D        T +GH
Sbjct: 218 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 255



 Score = 95.5 bits (236), Expect = 6e-20
 Identities = 61/222 (27%), Positives = 105/222 (47%), Gaps = 1/222 (0%)
 Frame = +2

Query: 278 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS 457
           L+++L GH   V SV  S      ASSS D  I++W   +GK  K+I    +    +A+S
Sbjct: 37  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 96

Query: 458 PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIF 637
            DS  L + +    + I+ V SGK   +L     ++    ++P    + SG+ D  + I+
Sbjct: 97  SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156

Query: 638 DIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWV 817
           D+ TGK L TL  H+ P+ ++ F+ D  L+V++S DG  +I+D        TL    +  
Sbjct: 157 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 216

Query: 818 LN-VAFCPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQDQ 940
           ++ V F P+  +                   C+ T+  H+++
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 258



 Score = 72.8 bits (177), Expect = 4e-13
 Identities = 52/199 (26%), Positives = 99/199 (49%), Gaps = 8/199 (4%)
 Frame = +2

Query: 191 NKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 370
           N    S  +V+GS D+ V++W  +  K     +L  H   V +V  +    +  SSS D 
Sbjct: 136 NFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193

Query: 371 HIRLWDLENGKQIKSI---DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK--KE 535
             R+WD  +G+ +K++   D  PV    + FSP+ +Y+   T    + ++    GK  K 
Sbjct: 194 LCRIWDTASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 251

Query: 536 YSLDTRGKFILSIAYS-PDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP 712
           Y+     K+ +   +S   GK++ SG+ D ++ I+++ T +++  L+GH   + S    P
Sbjct: 252 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 311

Query: 713 DSQLLVTAS--DDGYIKIY 763
              ++ +A+  +D  IK++
Sbjct: 312 TENIIASAALENDKTIKLW 330


>ref|NP_001095379.1| katanin p80 WD40-containing subunit B1 [Bos taurus].
          Length = 663

 Score =  101 bits (251), Expect = 1e-21
 Identities = 60/230 (26%), Positives = 110/230 (47%)
 Frame = +2

Query: 152 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDIS 331
           AH   + S+  G   K +   + TG  D  V +W     K +   SL GH   V SV ++
Sbjct: 18  AHASNVSSLVLG---KASGRLLATGGDDCRVNLWSIN--KPNCIMSLTGHTSPVESVRLN 72

Query: 332 HTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIF 511
               +  + S    IR+WDLE  K ++++     +  +L F P  +++A+G+    + ++
Sbjct: 73  TPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLW 132

Query: 512 GVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI 691
            +      +      + +  + +SPDGK+LAS A D  + ++D+  GK++    GH  P+
Sbjct: 133 DIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPV 192

Query: 692 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
             + F P+  LL + S D  I+ +D++   +   + G    V ++ F PD
Sbjct: 193 NVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSILFNPD 242



 Score = 79.0 bits (193), Expect = 6e-15
 Identities = 53/209 (25%), Positives = 94/209 (44%)
 Frame = +2

Query: 209 ETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWD 388
           E +V GS    ++VW     K+    +L GH+  + S+D        AS S D +I+LWD
Sbjct: 76  ELIVAGSQSGSIRVWDLEAAKI--LRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWD 133

Query: 389 LENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFIL 568
           +     +            L FSPD ++LA+      V ++ + +GK           + 
Sbjct: 134 IRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVN 193

Query: 569 SIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDG 748
            + + P+   LASG+ D  I  +D+   +++  +EG   P+RS+ F+PD   L +   D 
Sbjct: 194 VVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSILFNPDGCCLYSGCQDS 253

Query: 749 YIKIYDVQHANLAGTLSGHASWVLNVAFC 835
            +++Y  +       +  H   V ++A C
Sbjct: 254 -LRVYGWEPERCFDVVLVHWGKVADLAIC 281



 Score = 77.0 bits (188), Expect = 2e-14
 Identities = 42/167 (25%), Positives = 80/167 (47%)
 Frame = +2

Query: 344 IAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES 523
           + A+   D  + LW +     I S+        ++  +   + +  G+  G + ++ +E+
Sbjct: 35  LLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEA 94

Query: 524 GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT 703
            K   +L      I S+ + P G+++ASG+ D  I ++DI     +    GH+  +R L 
Sbjct: 95  AKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLR 154

Query: 704 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD 844
           FSPD + L +A+DD  +K++D+    +     GH   V  V F P++
Sbjct: 155 FSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNE 201


>ref|XP_002700435.1| PREDICTED: TAF5-like RNA polymerase II, p300/CBP-associated factor
            (PCAF)-associated factor, 65kDa [Bos taurus].
          Length = 600

 Score = 95.5 bits (236), Expect = 6e-20
 Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 11/228 (4%)
 Frame = +2

Query: 182  WGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSS 361
            + T    +S  +++ S D  ++ W    E        +GH   V  +DIS      AS+S
Sbjct: 357  YSTRFLPDSSALLSCSEDTSIRYWDL--ESFTNTVLYQGHAYPVWDLDISPHSLFFASAS 414

Query: 362  LDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS 541
             D   RLW  +    ++           + F P+S YLATG+    V ++  + G     
Sbjct: 415  YDHTARLWSFDRTYPLRIYAGHLAGVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRL 474

Query: 542  LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ 721
                   +  +A+SP+G+YL S   D ++ ++D+A+G L   L GH   I S+TFS DS 
Sbjct: 475  FTGHCGPVRCLAFSPNGQYLVSAGEDQLLKLWDLASGTLYKDLHGHTDDITSVTFSLDSS 534

Query: 722  LLVTASDDGYIKIYDVQ-----------HANLAGTLSGHASWVLNVAF 832
            ++ +AS D  ++I+D++            + L G  +G  S VLNV F
Sbjct: 535  VIASASMDNSVRIWDIKSKHNSTPADGSSSELLGVYTGQMSTVLNVQF 582



 Score = 80.1 bits (196), Expect = 3e-15
 Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 2/167 (1%)
 Frame = +2

Query: 353 SSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGT--HVGKVNIFGVESG 526
           S S D  IR WDLE+              W L  SP S + A+ +  H  ++  F     
Sbjct: 370 SCSEDTSIRYWDLESFTNTVLYQGHAYPVWDLDISPHSLFFASASYDHTARLWSFDRTYP 429

Query: 527 KKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTF 706
            + Y+    G  +  + + P+  YLA+G+ D  + ++    G  +    GH  P+R L F
Sbjct: 430 LRIYAGHLAG--VDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHCGPVRCLAF 487

Query: 707 SPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDT 847
           SP+ Q LV+A +D  +K++D+    L   L GH   + +V F  D +
Sbjct: 488 SPNGQYLVSAGEDQLLKLWDLASGTLYKDLHGHTDDITSVTFSLDSS 534


>ref|XP_603152.3| PREDICTED: PCAF associated factor 65 beta [Bos taurus].
          Length = 600

 Score = 95.5 bits (236), Expect = 6e-20
 Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 11/228 (4%)
 Frame = +2

Query: 182  WGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSS 361
            + T    +S  +++ S D  ++ W    E        +GH   V  +DIS      AS+S
Sbjct: 357  YSTRFLPDSSALLSCSEDTSIRYWDL--ESFTNTVLYQGHAYPVWDLDISPHSLFFASAS 414

Query: 362  LDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS 541
             D   RLW  +    ++           + F P+S YLATG+    V ++  + G     
Sbjct: 415  YDHTARLWSFDRTYPLRIYAGHLAGVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRL 474

Query: 542  LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ 721
                   +  +A+SP+G+YL S   D ++ ++D+A+G L   L GH   I S+TFS DS 
Sbjct: 475  FTGHCGPVRCLAFSPNGQYLVSAGEDQLLKLWDLASGTLYKDLHGHTDDITSVTFSLDSS 534

Query: 722  LLVTASDDGYIKIYDVQ-----------HANLAGTLSGHASWVLNVAF 832
            ++ +AS D  ++I+D++            + L G  +G  S VLNV F
Sbjct: 535  VIASASMDNSVRIWDIKSKHNSTPADGSSSELLGVYTGQMSTVLNVQF 582



 Score = 80.1 bits (196), Expect = 3e-15
 Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 2/167 (1%)
 Frame = +2

Query: 353 SSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGT--HVGKVNIFGVESG 526
           S S D  IR WDLE+              W L  SP S + A+ +  H  ++  F     
Sbjct: 370 SCSEDTSIRYWDLESFTNTVLYQGHAYPVWDLDISPHSLFFASASYDHTARLWSFDRTYP 429

Query: 527 KKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTF 706
            + Y+    G  +  + + P+  YLA+G+ D  + ++    G  +    GH  P+R L F
Sbjct: 430 LRIYAGHLAG--VDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHCGPVRCLAF 487

Query: 707 SPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDT 847
           SP+ Q LV+A +D  +K++D+    L   L GH   + +V F  D +
Sbjct: 488 SPNGQYLVSAGEDQLLKLWDLASGTLYKDLHGHTDDITSVTFSLDSS 534


>ref|NP_001014887.1| notchless protein homolog 1 [Bos taurus].
          Length = 486

 Score = 94.4 bits (233), Expect = 1e-19
 Identities = 61/191 (31%), Positives = 97/191 (50%), Gaps = 6/191 (3%)
 Frame = +2

Query: 287 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS 466
           SLEGH   V+SV  S T    AS S D  +R WDL       +         ++++SPD 
Sbjct: 110 SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 169

Query: 467 QYLATGTHVGKVNIFGVESGKKE-YSLDTRGKFILSIAY-----SPDGKYLASGAIDGII 628
           + LA+G   G++ ++   +GK+   +L    K+I ++++     +P+ +Y+AS + DG +
Sbjct: 170 KKLASGCKNGQILLWDPSTGKQVGRALTGHSKWITALSWEPLHANPECRYVASSSKDGSV 229

Query: 629 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 808
            ++D   G+   TL GHA  +  L +  D  LL +AS D  IK++      L  TL GH 
Sbjct: 230 RVWDTTAGRCERTLTGHAQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRTLQGHG 288

Query: 809 SWVLNVAFCPD 841
            WV  +A   D
Sbjct: 289 HWVNTMALSTD 299



 Score = 89.0 bits (219), Expect = 6e-18
 Identities = 59/230 (25%), Positives = 106/230 (46%), Gaps = 1/230 (0%)
 Frame = +2

Query: 155 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISH 334
           H  ++  + WG         + + S D  +KVW+  D  L       GH +  +++   +
Sbjct: 246 HAQSVTCLRWG-----GDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDY 300

Query: 335 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 514
            L   A    +A +   DL    Q   +    +  + L      + L +G+    + ++ 
Sbjct: 301 ALRTGAFEPAEASVNAQDLRGSLQ--ELKERALSRYNLVRGQGPERLVSGSDDFTLFLWS 358

Query: 515 VESGKKEYSLDTRGKFILS-IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI 691
               KK  +  T  + +++ + +SPD + +AS + D  I ++D  TGK L +L GH   +
Sbjct: 359 PAEDKKPLARMTGHQALINQVVFSPDSRVIASASFDKSIKLWDGRTGKYLASLRGHVAAV 418

Query: 692 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
             + +S DS+LLV+ S D  +K++DV+   L+  L GHA  V  V + PD
Sbjct: 419 YQIAWSADSRLLVSGSSDSTLKVWDVKAQKLSTDLPGHADEVYAVDWSPD 468



 Score = 69.3 bits (168), Expect = 5e-12
 Identities = 42/146 (28%), Positives = 75/146 (51%)
 Frame = +2

Query: 200 ENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 379
           +  E +V+GS D  + +W   ++K  L   + GHQ  +  V  S    + AS+S D  I+
Sbjct: 340 QGPERLVSGSDDFTLFLWSPAEDKKPLA-RMTGHQALINQVVFSPDSRVIASASFDKSIK 398

Query: 380 LWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGK 559
           LWD   GK + S+       + +A+S DS+ L +G+    + ++ V++ K    L     
Sbjct: 399 LWDGRTGKYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLSTDLPGHAD 458

Query: 560 FILSIAYSPDGKYLASGAIDGIINIF 637
            + ++ +SPDG+ +ASG  D  + I+
Sbjct: 459 EVYAVDWSPDGQRVASGGKDKCLRIW 484



 Score = 65.9 bits (159), Expect = 5e-11
 Identities = 53/199 (26%), Positives = 89/199 (44%), Gaps = 7/199 (3%)
 Frame = +2

Query: 149 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDI 328
           + H +A+ SVA+    K     + +GS D  V+ W    E     ++ +GH+  V+S+  
Sbjct: 112 EGHSEAVISVAFSPTGKY----LASGSGDTTVRFWDLSTETP--HFTCQGHRHWVLSISW 165

Query: 329 SHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS-------PDSQYLATGT 487
           S      AS   +  I LWD   GKQ+     G    W  A S       P+ +Y+A+ +
Sbjct: 166 SPDGKKLASGCKNGQILLWDPSTGKQVGRALTGH-SKWITALSWEPLHANPECRYVASSS 224

Query: 488 HVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHT 667
             G V ++   +G+ E +L    + +  + +  DG  L S + D  I ++    G L  T
Sbjct: 225 KDGSVRVWDTTAGRCERTLTGHAQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRT 283

Query: 668 LEGHAMPIRSLTFSPDSQL 724
           L+GH   + ++  S D  L
Sbjct: 284 LQGHGHWVNTMALSTDYAL 302


>ref|NP_001157418.1| WD repeat-containing protein 38 [Bos taurus].
          Length = 296

 Score = 93.2 bits (230), Expect = 3e-19
 Identities = 65/208 (31%), Positives = 101/208 (48%), Gaps = 3/208 (1%)
 Frame = +2

Query: 227 SLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQ 406
           S D  +++W   D K  LQ  L+GHQ  V +V  SH     AS   D  + LW++++G+ 
Sbjct: 82  SCDRTIRLWDATDAKC-LQ-VLKGHQRSVETVSFSHDSKQLASGGWDKRVMLWEVQSGQV 139

Query: 407 IKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK---EYSLDTRGKFILSIA 577
           ++          +  F+P S  LATG+    + ++ + +G        L+     I  + 
Sbjct: 140 LRHFVGHRDSVQSSDFAPSSDCLATGSWDSTIRMWDLRAGTPGIFHQELEGHRGNISCLC 199

Query: 578 YSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIK 757
           YSP G  LASG+ D  I+I+  +T  LL  L+GH   ++S+ FSPD Q L +A     +K
Sbjct: 200 YSPSG-LLASGSWDKTIHIWKPSTRSLLIQLKGHITWVKSIAFSPDGQQLASAGYSHMVK 258

Query: 758 IYDVQHANLAGTLSGHASWVLNVAFCPD 841
           ++D        TL G  +     AF PD
Sbjct: 259 VWDCNTGKCTETLKGVLNVAHACAFMPD 286



 Score = 91.7 bits (226), Expect = 9e-19
 Identities = 69/216 (31%), Positives = 108/216 (50%), Gaps = 3/216 (1%)
 Frame = +2

Query: 203 NSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 382
           + + ++T S D  V  W+ +  +L   W L GH+  V     S    + AS+S D  IRL
Sbjct: 32  DGQRLLTASEDGCVYGWETQSGRL--LWRLRGHKGPVRFCRFSPDGRLFASTSCDRTIRL 89

Query: 383 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKF 562
           WD  + K ++ +        T++FS DS+ LA+G    +V ++ V+SG+           
Sbjct: 90  WDATDAKCLQVLKGHQRSVETVSFSHDSKQLASGGWDKRVMLWEVQSGQVLRHFVGHRDS 149

Query: 563 ILSIAYSPDGKYLASGAIDGIINIFDIATGK--LLH-TLEGHAMPIRSLTFSPDSQLLVT 733
           + S  ++P    LA+G+ D  I ++D+  G   + H  LEGH   I  L +SP S LL +
Sbjct: 150 VQSSDFAPSSDCLATGSWDSTIRMWDLRAGTPGIFHQELEGHRGNISCLCYSP-SGLLAS 208

Query: 734 ASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
            S D  I I+     +L   L GH +WV ++AF PD
Sbjct: 209 GSWDKTIHIWKPSTRSLLIQLKGHITWVKSIAFSPD 244



 Score = 71.6 bits (174), Expect = 9e-13
 Identities = 54/202 (26%), Positives = 100/202 (49%), Gaps = 3/202 (1%)
 Frame = +2

Query: 149 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDI 328
           + H  ++ +V++  + K+    + +G  D  V +W+ +  ++   +   GH+  V S D 
Sbjct: 102 KGHQRSVETVSFSHDSKQ----LASGGWDKRVMLWEVQSGQVLRHFV--GHRDSVQSSDF 155

Query: 329 SHTLPIAASSSLDAHIRLWDLENGKQ---IKSIDAGPVDAWTLAFSPDSQYLATGTHVGK 499
           + +    A+ S D+ IR+WDL  G      + ++    +   L +SP S  LA+G+    
Sbjct: 156 APSSDCLATGSWDSTIRMWDLRAGTPGIFHQELEGHRGNISCLCYSP-SGLLASGSWDKT 214

Query: 500 VNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH 679
           ++I+   +      L     ++ SIA+SPDG+ LAS     ++ ++D  TGK   TL+G 
Sbjct: 215 IHIWKPSTRSLLIQLKGHITWVKSIAFSPDGQQLASAGYSHMVKVWDCNTGKCTETLKGV 274

Query: 680 AMPIRSLTFSPDSQLLVTASDD 745
                +  F PD +LLV+ + D
Sbjct: 275 LNVAHACAFMPDGKLLVSGAVD 296



 Score = 68.6 bits (166), Expect = 8e-12
 Identities = 44/151 (29%), Positives = 66/151 (43%)
 Frame = +2

Query: 491 VGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL 670
           VG+V  FG   G+           + S A+SPDG+ L + + DG +  ++  +G+LL  L
Sbjct: 11  VGRVKFFGRHRGE-----------VNSSAFSPDGQRLLTASEDGCVYGWETQSGRLLWRL 59

Query: 671 EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTH 850
            GH  P+R   FSPD +L  + S D  I+++D   A     L GH   V  V+F  D   
Sbjct: 60  RGHKGPVRFCRFSPDGRLFASTSCDRTIRLWDATDAKCLQVLKGHQRSVETVSFSHDSKQ 119

Query: 851 FXXXXXXXXXXXXXXGTRTCVHTFFDHQDQV 943
                           +   +  F  H+D V
Sbjct: 120 LASGGWDKRVMLWEVQSGQVLRHFVGHRDSV 150



 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 40/130 (30%), Positives = 64/130 (49%)
 Frame = +2

Query: 449 AFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGII 628
           AFSPD Q L T +  G V  +  +SG+  + L      +    +SPDG+  AS + D  I
Sbjct: 28  AFSPDGQRLLTASEDGCVYGWETQSGRLLWRLRGHKGPVRFCRFSPDGRLFASTSCDRTI 87

Query: 629 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 808
            ++D    K L  L+GH   + +++FS DS+ L +   D  + +++VQ   +     GH 
Sbjct: 88  RLWDATDAKCLQVLKGHQRSVETVSFSHDSKQLASGGWDKRVMLWEVQSGQVLRHFVGHR 147

Query: 809 SWVLNVAFCP 838
             V +  F P
Sbjct: 148 DSVQSSDFAP 157


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,138,470
Number of extensions: 1199038
Number of successful extensions: 5807
Number of sequences better than 1.0e-05: 148
Number of HSP's gapped: 5166
Number of HSP's successfully gapped: 357
Length of query: 319
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 217
Effective length of database: 14,306,398
Effective search space: 3104488366
Effective search space used: 3104488366
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008329
         (959 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_536215.2| PREDICTED: similar to WD repeat domain 61 isofo...   542   e-154
Alignment   gi|XP_853762.1| PREDICTED: similar to WD repeat domain 61 [Cani...   380   e-105
Alignment   gi|XP_861437.1| PREDICTED: similar to WD repeat domain 61 isofo...   233   2e-61
Alignment   gi|XP_546100.2| PREDICTED: similar to TAF5-like RNA polymerase ...   105   8e-23
Alignment   gi|XP_862542.1| PREDICTED: similar to Katanin p80 WD40-containi...   101   9e-22
Alignment   gi|XP_850865.1| PREDICTED: similar to Katanin p80 WD40-containi...   101   9e-22
Alignment   gi|XP_534593.2| PREDICTED: similar to CG7568-PA [Canis familiar...   100   2e-21
Alignment   gi|XP_548262.2| PREDICTED: similar to Notchless homolog 1 (WD-r...    91   2e-18
Alignment   gi|XP_850117.1| PREDICTED: similar to WD repeat domain 5 [Canis...    89   5e-18
Alignment   gi|XP_541857.2| PREDICTED: similar to WD repeat domain 51A isof...    89   6e-18

>ref|XP_536215.2| PREDICTED: similar to WD repeat domain 61 isoform 1 [Canis
           familiaris].
          Length = 305

 Score =  542 bits (1397), Expect = e-154
 Identities = 265/282 (93%), Positives = 267/282 (94%)
 Frame = +2

Query: 113 MTNQYSILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSL 292
           MTNQYSILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKW DE+LDLQWSL
Sbjct: 1   MTNQYSILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWCDERLDLQWSL 60

Query: 293 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 472
           EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDL+NGKQIKSIDAGPVDAWTLAFSPDSQY
Sbjct: 61  EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLDNGKQIKSIDAGPVDAWTLAFSPDSQY 120

Query: 473 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 652
           LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG
Sbjct: 121 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 180

Query: 653 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 832
           KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF
Sbjct: 181 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 240

Query: 833 CPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQDQVWGVKY 958
           CPDDTHF              GTRTCVHTFFDHQDQVWGVKY
Sbjct: 241 CPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKY 282



 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 48/196 (24%), Positives = 96/196 (48%)
 Frame = +2

Query: 179 AWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASS 358
           AW      +S+ + TG+    V ++     K +  +SL+     ++S+  S      AS 
Sbjct: 109 AWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE--YSLDTRGKFILSIAYSPDGKYLASG 166

Query: 359 SLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY 538
           ++D  I ++D+  GK + +++   +   +L FSPDSQ L T +  G + I+ V+      
Sbjct: 167 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG 226

Query: 539 SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS 718
           +L     ++L++A+ PD  +  S + D  + ++D+ T   +HT   H   +  + ++ + 
Sbjct: 227 TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNG 286

Query: 719 QLLVTASDDGYIKIYD 766
             +V+  DD  I +YD
Sbjct: 287 SKIVSVGDDQEIHVYD 302


>ref|XP_853762.1| PREDICTED: similar to WD repeat domain 61 [Canis familiaris].
          Length = 221

 Score =  380 bits (975), Expect = e-105
 Identities = 197/247 (79%), Positives = 201/247 (81%)
 Frame = +2

Query: 113 MTNQYSILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSL 292
           MTNQYSILFKQEQA DDAIW                                 LDLQWSL
Sbjct: 1   MTNQYSILFKQEQAQDDAIW---------------------------------LDLQWSL 27

Query: 293 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 472
           E HQL VVSV+ISHTLPIAASSSLDAHIRLWDL+N KQIKSIDAGPVDAWTL FSPD QY
Sbjct: 28  ERHQLAVVSVNISHTLPIAASSSLDAHIRLWDLDNSKQIKSIDAGPVDAWTLVFSPDPQY 87

Query: 473 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 652
           LATGTHVGKVNIFGVESGKK+YSLDTRGKFILSI YSPDG YL SGAIDG INIFDIATG
Sbjct: 88  LATGTHVGKVNIFGVESGKKKYSLDTRGKFILSITYSPDGMYLTSGAIDGAINIFDIATG 147

Query: 653 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 832
           KLLHTLEG A+PIRSLTFS  SQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF
Sbjct: 148 KLLHTLEGLAIPIRSLTFSLASQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 207

Query: 833 CPDDTHF 853
           CPDDTHF
Sbjct: 208 CPDDTHF 214



 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 28/129 (21%), Positives = 57/129 (44%)
 Frame = +2

Query: 533 EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP 712
           ++SL+     ++S+  S      AS ++D  I ++D+   K + +++   +   +L FSP
Sbjct: 24  QWSLERHQLAVVSVNISHTLPIAASSSLDAHIRLWDLDNSKQIKSIDAGPVDAWTLVFSP 83

Query: 713 DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFXXXXXXXXXXXXX 892
           D Q L T +  G + I+ V+      +L     ++L++ + PD  +              
Sbjct: 84  DPQYLATGTHVGKVNIFGVESGKKKYSLDTRGKFILSITYSPDGMYLTSGAIDGAINIFD 143

Query: 893 XGTRTCVHT 919
             T   +HT
Sbjct: 144 IATGKLLHT 152


>ref|XP_861437.1| PREDICTED: similar to WD repeat domain 61 isoform a isoform 2
           [Canis familiaris].
          Length = 154

 Score =  233 bits (594), Expect = 2e-61
 Identities = 113/128 (88%), Positives = 113/128 (88%)
 Frame = +2

Query: 575 AYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYI 754
           A SPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYI
Sbjct: 4   AQSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYI 63

Query: 755 KIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQ 934
           KIYDVQHANLAGTLSGHASWVLNVAFCPDDTHF              GTRTCVHTFFDHQ
Sbjct: 64  KIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ 123

Query: 935 DQVWGVKY 958
           DQVWGVKY
Sbjct: 124 DQVWGVKY 131



 Score = 79.3 bits (194), Expect = 5e-15
 Identities = 37/139 (26%), Positives = 73/139 (52%)
 Frame = +2

Query: 350 ASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK 529
           AS ++D  I ++D+  GK + +++   +   +L FSPDSQ L T +  G + I+ V+   
Sbjct: 13  ASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN 72

Query: 530 KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFS 709
              +L     ++L++A+ PD  +  S + D  + ++D+ T   +HT   H   +  + ++
Sbjct: 73  LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYN 132

Query: 710 PDSQLLVTASDDGYIKIYD 766
            +   +V+  DD  I +YD
Sbjct: 133 GNGSKIVSVGDDQEIHVYD 151


>ref|XP_546100.2| PREDICTED: similar to TAF5-like RNA polymerase II
           p300/CBP-associated factor-associated factor 65 kDa
           subunit 5L (PCAF associated factor 65 beta) (PAF65-beta)
           [Canis familiaris].
          Length = 589

 Score =  105 bits (261), Expect = 8e-23
 Identities = 65/191 (34%), Positives = 96/191 (50%), Gaps = 11/191 (5%)
 Frame = +2

Query: 293 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 472
           +GH   V  +DIS      AS S D   RLW  +    ++       D   + F P+S Y
Sbjct: 381 QGHAYPVWDLDISPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNY 440

Query: 473 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 652
           LATG+    V ++  + G            +LS+A+SP+GKYLAS   D  + ++D+A+G
Sbjct: 441 LATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASG 500

Query: 653 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH-----------ANLAGTLS 799
            L   L GH   I SLTFSPDS L+ +AS D  ++++D+++             L G  +
Sbjct: 501 TLYKELRGHTDNITSLTFSPDSSLIASASMDNSVRVWDIRNTYCSTPADGSSGELVGVYT 560

Query: 800 GHASWVLNVAF 832
           G  S VL+V F
Sbjct: 561 GQMSNVLSVQF 571



 Score = 79.7 bits (195), Expect = 4e-15
 Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 3/168 (1%)
 Frame = +2

Query: 353 SSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 532
           S S D  IR WDL +              W L  SP S Y A+G+H     ++  +   +
Sbjct: 359 SCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPYSLYFASGSHDRTARLWSFD---R 415

Query: 533 EYSLDTRGKFILSI---AYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT 703
            Y L      +  +    + P+  YLA+G+ D  + ++    G  +    GH  P+ SL 
Sbjct: 416 TYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLA 475

Query: 704 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDT 847
           FSP+ + L +A +D  +K++D+    L   L GH   + ++ F PD +
Sbjct: 476 FSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSS 523



 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 30/107 (28%), Positives = 53/107 (49%)
 Frame = +2

Query: 203 NSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 382
           NS  + TGS D  V++W  +       ++  GH+  V+S+  S      AS+  D  ++L
Sbjct: 437 NSNYLATGSTDKTVRLWSAQQGNSVRLFT--GHRGPVLSLAFSPNGKYLASAGEDQRLKL 494

Query: 383 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES 523
           WDL +G   K +     +  +L FSPDS  +A+ +    V ++ + +
Sbjct: 495 WDLASGTLYKELRGHTDNITSLTFSPDSSLIASASMDNSVRVWDIRN 541


>ref|XP_862542.1| PREDICTED: similar to Katanin p80 WD40-containing subunit B1
           (Katanin p80 subunit B1) (p80 katanin) isoform 2 [Canis
           familiaris].
          Length = 655

 Score =  101 bits (252), Expect = 9e-22
 Identities = 61/230 (26%), Positives = 110/230 (47%)
 Frame = +2

Query: 152 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDIS 331
           AH   + S+  G   K +   + TG  D  V +W     K +   SL GH   V SV ++
Sbjct: 18  AHASNVSSLVLG---KASGRLLATGGDDCRVNLWSIN--KPNCIMSLTGHTSPVESVRLN 72

Query: 332 HTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIF 511
               +  + S    IR+WDLE  K ++++     +  +L F P  +++A+G+    + ++
Sbjct: 73  TPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLW 132

Query: 512 GVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI 691
            +      +      + +  + +SPDGK+LAS A D  + ++D+  GK++    GH  P+
Sbjct: 133 DIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPV 192

Query: 692 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
             + F P+  LL + S D  I+ +D++   +   + G    V +V F PD
Sbjct: 193 NVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPD 242



 Score = 77.0 bits (188), Expect = 2e-14
 Identities = 42/167 (25%), Positives = 80/167 (47%)
 Frame = +2

Query: 344 IAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES 523
           + A+   D  + LW +     I S+        ++  +   + +  G+  G + ++ +E+
Sbjct: 35  LLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEA 94

Query: 524 GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT 703
            K   +L      I S+ + P G+++ASG+ D  I ++DI     +    GH+  +R L 
Sbjct: 95  AKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLR 154

Query: 704 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD 844
           FSPD + L +A+DD  +K++D+    +     GH   V  V F P++
Sbjct: 155 FSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNE 201



 Score = 76.3 bits (186), Expect = 4e-14
 Identities = 53/211 (25%), Positives = 94/211 (44%)
 Frame = +2

Query: 209 ETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWD 388
           E +V GS    ++VW     K+    +L GH+  + S+D        AS S D +I+LWD
Sbjct: 76  ELIVAGSQSGSIRVWDLEAAKI--LRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWD 133

Query: 389 LENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFIL 568
           +     +            L FSPD ++LA+      V ++ + +GK           + 
Sbjct: 134 IRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVN 193

Query: 569 SIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDG 748
            + + P+   LASG+ D  I  +D+   +++  +EG   P+RS+ F+PD   L +   D 
Sbjct: 194 VVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDS 253

Query: 749 YIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
            +++Y  +       +      V ++A C D
Sbjct: 254 -LRVYGWEPERCFDVVLVSWGKVADLAVCND 283


>ref|XP_850865.1| PREDICTED: similar to Katanin p80 WD40-containing subunit B1
           (Katanin p80 subunit B1) (p80 katanin) isoform 1 [Canis
           familiaris].
          Length = 655

 Score =  101 bits (252), Expect = 9e-22
 Identities = 61/230 (26%), Positives = 110/230 (47%)
 Frame = +2

Query: 152 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDIS 331
           AH   + S+  G   K +   + TG  D  V +W     K +   SL GH   V SV ++
Sbjct: 18  AHASNVSSLVLG---KASGRLLATGGDDCRVNLWSIN--KPNCIMSLTGHTSPVESVRLN 72

Query: 332 HTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIF 511
               +  + S    IR+WDLE  K ++++     +  +L F P  +++A+G+    + ++
Sbjct: 73  TPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLW 132

Query: 512 GVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI 691
            +      +      + +  + +SPDGK+LAS A D  + ++D+  GK++    GH  P+
Sbjct: 133 DIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPV 192

Query: 692 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
             + F P+  LL + S D  I+ +D++   +   + G    V +V F PD
Sbjct: 193 NVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPD 242



 Score = 77.0 bits (188), Expect = 2e-14
 Identities = 42/167 (25%), Positives = 80/167 (47%)
 Frame = +2

Query: 344 IAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES 523
           + A+   D  + LW +     I S+        ++  +   + +  G+  G + ++ +E+
Sbjct: 35  LLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEA 94

Query: 524 GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT 703
            K   +L      I S+ + P G+++ASG+ D  I ++DI     +    GH+  +R L 
Sbjct: 95  AKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLR 154

Query: 704 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD 844
           FSPD + L +A+DD  +K++D+    +     GH   V  V F P++
Sbjct: 155 FSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNE 201



 Score = 76.3 bits (186), Expect = 4e-14
 Identities = 53/211 (25%), Positives = 94/211 (44%)
 Frame = +2

Query: 209 ETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWD 388
           E +V GS    ++VW     K+    +L GH+  + S+D        AS S D +I+LWD
Sbjct: 76  ELIVAGSQSGSIRVWDLEAAKI--LRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWD 133

Query: 389 LENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFIL 568
           +     +            L FSPD ++LA+      V ++ + +GK           + 
Sbjct: 134 IRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVN 193

Query: 569 SIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDG 748
            + + P+   LASG+ D  I  +D+   +++  +EG   P+RS+ F+PD   L +   D 
Sbjct: 194 VVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDS 253

Query: 749 YIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
            +++Y  +       +      V ++A C D
Sbjct: 254 -LRVYGWEPERCFDVVLVSWGKVADLAVCND 283


>ref|XP_534593.2| PREDICTED: similar to CG7568-PA [Canis familiaris].
          Length = 415

 Score =  100 bits (249), Expect = 2e-21
 Identities = 69/286 (24%), Positives = 133/286 (46%), Gaps = 2/286 (0%)
 Frame = +2

Query: 107 KEMTNQYSILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRD-EKLDLQ 283
           ++ +N    LFK  +AH   + +VA      ++    +TGS D   K+W     E+L   
Sbjct: 75  RQHSNHTFYLFKVLRAHILPLTNVALN----KSGSCFITGSYDRTCKLWDTASGEELH-- 128

Query: 284 WSLEGHQLGVVSVDISHTL-PIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP 460
            +LEGH+  V ++  ++      A+ S D   +LW +E GK   +      +   L+F+P
Sbjct: 129 -TLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNP 187

Query: 461 DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFD 640
            S  +ATG+      ++ ++SG++ ++L      I+S++++  G  + +G+ D  + +++
Sbjct: 188 QSTLVATGSMDTTAKLWDIQSGEEVFTLRGHSAEIISLSFNTSGDRIVTGSFDHTVAVWE 247

Query: 641 IATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVL 820
             TG+ ++TL GH   I S  F+ D  L++T S D    ++D  +     TL+GH   +L
Sbjct: 248 ADTGRKVYTLIGHCAEISSALFNWDCSLILTGSMDKTCMLWDASNGKCVATLTGHDDEIL 307

Query: 821 NVAFCPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQDQVWGVKY 958
           +  F                      TR C+     H+ ++  + +
Sbjct: 308 DSCFDYTGKLIATASADGTARVFSAATRKCLTKLEGHEGEISKISF 353



 Score = 97.4 bits (241), Expect = 2e-20
 Identities = 57/270 (21%), Positives = 118/270 (43%)
 Frame = +2

Query: 149 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDI 328
           + H + ++++A+        + + TGS D   K+W     K     +  GH   +V +  
Sbjct: 131 EGHRNVVYAIAFNN---PYGDKIATGSFDKTCKLWSVETGKC--YHTFRGHTAEIVCLSF 185

Query: 329 SHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNI 508
           +    + A+ S+D   +LWD+++G+++ ++     +  +L+F+     + TG+    V +
Sbjct: 186 NPQSTLVATGSMDTTAKLWDIQSGEEVFTLRGHSAEIISLSFNTSGDRIVTGSFDHTVAV 245

Query: 509 FGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMP 688
           +  ++G+K Y+L      I S  ++ D   + +G++D    ++D + GK + TL GH   
Sbjct: 246 WEADTGRKVYTLIGHCAEISSALFNWDCSLILTGSMDKTCMLWDASNGKCVATLTGHDDE 305

Query: 689 IRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFXXXXX 868
           I    F    +L+ TAS DG  +++          L GH   +  ++F P          
Sbjct: 306 ILDSCFDYTGKLIATASADGTARVFSAATRKCLTKLEGHEGEISKISFNPQGNRLLTGSA 365

Query: 869 XXXXXXXXXGTRTCVHTFFDHQDQVWGVKY 958
                     T  C+     H D+++   +
Sbjct: 366 DETARIWDAQTGQCLQVLEGHTDEIFSCAF 395



 Score = 80.9 bits (198), Expect = 2e-15
 Identities = 54/205 (26%), Positives = 93/205 (45%)
 Frame = +2

Query: 149 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDI 328
           + H   I S+++ T+     + +VTGS D  V VW+    +    ++L GH   + S   
Sbjct: 216 RGHSAEIISLSFNTS----GDRIVTGSFDHTVAVWEADTGRK--VYTLIGHCAEISSALF 269

Query: 329 SHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNI 508
           +    +  + S+D    LWD  NGK + ++     +     F    + +AT +  G   +
Sbjct: 270 NWDCSLILTGSMDKTCMLWDASNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARV 329

Query: 509 FGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMP 688
           F   + K    L+     I  I+++P G  L +G+ D    I+D  TG+ L  LEGH   
Sbjct: 330 FSAATRKCLTKLEGHEGEISKISFNPQGNRLLTGSADETARIWDAQTGQCLQVLEGHTDE 389

Query: 689 IRSLTFSPDSQLLVTASDDGYIKIY 763
           I S  F+    +++T S D   +I+
Sbjct: 390 IFSCAFNYKGDIIITGSKDNTCRIW 414


>ref|XP_548262.2| PREDICTED: similar to Notchless homolog 1 (WD-repeat protein
           HUSSY-07) [Canis familiaris].
          Length = 468

 Score = 90.5 bits (223), Expect = 2e-18
 Identities = 61/230 (26%), Positives = 107/230 (46%), Gaps = 1/230 (0%)
 Frame = +2

Query: 155 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISH 334
           H  ++  + WG         + + S D  +KVW+  D  L       GH +  +++   +
Sbjct: 231 HTQSVTCLRWG-----GDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDY 285

Query: 335 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 514
            L   A    +A I   DL+   Q   +    +  + L      + L +G+    + ++ 
Sbjct: 286 ALRTGAFEPAEASINAQDLQGSLQ--ELKDRALRRYNLVRGQGPERLVSGSDDFTLFMWS 343

Query: 515 VESGKKEYSLDTRGKFILS-IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI 691
               KK  +  T  + +++ + +SPD + +AS + D  I ++D  TGK L +L GH   +
Sbjct: 344 PAEDKKPLARMTGHQALINQVLFSPDSRIIASASFDKSIKLWDGRTGKYLASLRGHVAAV 403

Query: 692 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
             + +S DS+LLV+ S D  +K++DV+   LA  L GHA  V  V + PD
Sbjct: 404 YQIAWSADSRLLVSGSSDSTLKVWDVKAQKLAADLPGHADEVYAVDWSPD 453



 Score = 89.0 bits (219), Expect = 6e-18
 Identities = 59/191 (30%), Positives = 93/191 (48%), Gaps = 6/191 (3%)
 Frame = +2

Query: 287 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS 466
           SLEGH   V+SV  S T    AS S D  +R WDL       +         ++++SPD 
Sbjct: 95  SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 154

Query: 467 QYLATGTHVGKVNIFGVESGKKEYS-LDTRGKFILSIAY-----SPDGKYLASGAIDGII 628
           + LA+G   G++ ++   +GK+    L    K+I  +++     +P+ +Y+AS + DG +
Sbjct: 155 KTLASGCKNGQILLWDPSTGKQVGRVLAGHSKWITGLSWEPLHANPECRYMASSSKDGSV 214

Query: 629 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 808
            ++D   G+    L GH   +  L +  D  LL +AS D  IK++      L  TL GH 
Sbjct: 215 RVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRTLQGHG 273

Query: 809 SWVLNVAFCPD 841
            WV  +A   D
Sbjct: 274 HWVNTMALSTD 284



 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 42/140 (30%), Positives = 72/140 (51%)
 Frame = +2

Query: 200 ENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 379
           +  E +V+GS D  + +W   ++K  L   + GHQ  +  V  S    I AS+S D  I+
Sbjct: 325 QGPERLVSGSDDFTLFMWSPAEDKKPLA-RMTGHQALINQVLFSPDSRIIASASFDKSIK 383

Query: 380 LWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGK 559
           LWD   GK + S+       + +A+S DS+ L +G+    + ++ V++ K    L     
Sbjct: 384 LWDGRTGKYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLAADLPGHAD 443

Query: 560 FILSIAYSPDGKYLASGAID 619
            + ++ +SPDG+ +ASG  D
Sbjct: 444 EVYAVDWSPDGQRVASGGKD 463



 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 57/217 (26%), Positives = 96/217 (44%), Gaps = 9/217 (4%)
 Frame = +2

Query: 149 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDI 328
           + H +A+ SVA+    K     + +GS D  V+ W    E     ++ +GH+  V+S+  
Sbjct: 97  EGHSEAVISVAFSPTGKY----LASGSGDTTVRFWDLSTETP--HFTCQGHRHWVLSISW 150

Query: 329 SHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS-------PDSQYLATGT 487
           S      AS   +  I LWD   GKQ+  + AG    W    S       P+ +Y+A+ +
Sbjct: 151 SPDGKTLASGCKNGQILLWDPSTGKQVGRVLAGH-SKWITGLSWEPLHANPECRYMASSS 209

Query: 488 HVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHT 667
             G V ++   +G+ E  L    + +  + +  DG  L S + D  I ++    G L  T
Sbjct: 210 KDGSVRVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRT 268

Query: 668 LEGHAMPIRSLTFSPDSQLLVTASD--DGYIKIYDVQ 772
           L+GH   + ++  S D  L   A +  +  I   D+Q
Sbjct: 269 LQGHGHWVNTMALSTDYALRTGAFEPAEASINAQDLQ 305


>ref|XP_850117.1| PREDICTED: similar to WD repeat domain 5 [Canis familiaris].
          Length = 334

 Score = 89.4 bits (220), Expect = 5e-18
 Identities = 55/218 (25%), Positives = 107/218 (49%), Gaps = 1/218 (0%)
 Frame = +2

Query: 155 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISH 334
           H  A+ SV +  N     E + + S D L+K+W   D K +   ++ GH+LG+  V  S 
Sbjct: 44  HTKAVSSVKFSPN----GEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSS 97

Query: 335 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 514
              +  S+S D  +++WD+ +GK +K++       +   F+P S  + +G+    V I+ 
Sbjct: 98  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 157

Query: 515 VESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLH-TLEGHAMPI 691
           V++GK   +L      + ++ ++ DG  + S + DG+      A  + +   L+    P+
Sbjct: 158 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCGKTGNAASRCMKLILDDDNPPV 217

Query: 692 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH 805
             + FSP+ + ++ A+ D  +K++D        T +GH
Sbjct: 218 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 255



 Score = 88.6 bits (218), Expect = 8e-18
 Identities = 51/157 (32%), Positives = 83/157 (52%)
 Frame = +2

Query: 278 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS 457
           L+++L GH   V SV  S      ASSS D  I++W   +GK  K+I    +    +A+S
Sbjct: 37  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 96

Query: 458 PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIF 637
            DS  L + +    + I+ V SGK   +L     ++    ++P    + SG+ D  + I+
Sbjct: 97  SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156

Query: 638 DIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDG 748
           D+ TGK L TL  H+ P+ ++ F+ D  L+V++S DG
Sbjct: 157 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193



 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 46/142 (32%), Positives = 70/142 (49%)
 Frame = +2

Query: 533 EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP 712
           +++L    K + S+ +SP+G++LAS + D +I I+    GK   T+ GH + I  + +S 
Sbjct: 38  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 97

Query: 713 DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFXXXXXXXXXXXXX 892
           DS LLV+ASDD  +KI+DV       TL GH+++V    F P                  
Sbjct: 98  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 157

Query: 893 XGTRTCVHTFFDHQDQVWGVKY 958
             T  C+ T   H D V  V +
Sbjct: 158 VKTGKCLKTLPAHSDPVSAVHF 179



 Score = 77.0 bits (188), Expect = 2e-14
 Identities = 43/133 (32%), Positives = 73/133 (54%)
 Frame = +2

Query: 443 TLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDG 622
           ++ FSP+ ++LA+ +    + I+G   GK E ++      I  +A+S D   L S + D 
Sbjct: 50  SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 109

Query: 623 IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG 802
            + I+D+++GK L TL+GH+  +    F+P S L+V+ S D  ++I+DV+      TL  
Sbjct: 110 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 169

Query: 803 HASWVLNVAFCPD 841
           H+  V  V F  D
Sbjct: 170 HSDPVSAVHFNRD 182



 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 57/256 (22%), Positives = 106/256 (41%), Gaps = 48/256 (18%)
 Frame = +2

Query: 140 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVS 319
           K    H   I  VAW ++    S  +V+ S D  +K+W     K     +L+GH   V  
Sbjct: 81  KTISGHKLGISDVAWSSD----SNLLVSASDDKTLKIWDVSSGKC--LKTLKGHSNYVFC 134

Query: 320 VDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDA--GPVDAWT---------------- 445
            + +    +  S S D  +R+WD++ GK +K++ A   PV A                  
Sbjct: 135 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 194

Query: 446 -------------------------LAFSPDSQYLATGTHVGKVNIFGVESGK--KEYSL 544
                                    + FSP+ +Y+   T    + ++    GK  K Y+ 
Sbjct: 195 CGKTGNAASRCMKLILDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 254

Query: 545 DTRGKFILSIAYS-PDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ 721
               K+ +   +S   GK++ SG+ D ++ I+++ T +++  L+GH   + S    P   
Sbjct: 255 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 314

Query: 722 LLVTAS--DDGYIKIY 763
           ++ +A+  +D  IK++
Sbjct: 315 IIASAALENDKTIKLW 330


>ref|XP_541857.2| PREDICTED: similar to WD repeat domain 51A isoform 1 [Canis
           familiaris].
          Length = 406

 Score = 89.0 bits (219), Expect = 6e-18
 Identities = 68/278 (24%), Positives = 120/278 (43%), Gaps = 43/278 (15%)
 Frame = +2

Query: 149 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDI 328
           + H DAI SV +  N K+    + +GS+D  + VW  + +    +++  GH+  V  V+ 
Sbjct: 16  KGHRDAITSVDFSLNTKQ----LASGSMDSCLMVWHMKPQSRAYRFA--GHKDAVTCVNF 69

Query: 329 SHTLPIAASSSLDAHIRLWDLENGK-----------QIKSI-------------DAGPVD 436
           S +  + AS S D  +R+W + N K            ++S+             D   V 
Sbjct: 70  SPSGHLLASGSRDKTVRIW-IPNVKGESTVFRAHTATVRSVHFCSDGQSLVTASDDKTVK 128

Query: 437 AWTL-------------------AFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGK 559
            W+                     FSPD + + + +    V ++   S +  +S    G 
Sbjct: 129 VWSTHRQKFLFSLSQHINWVRCARFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEHGG 188

Query: 560 FILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS 739
           F+  + + P G  +A+ ++D  + ++D+ T +LL   + H+  + +L+F P    L+TAS
Sbjct: 189 FVTYVDFHPSGTCIAAASMDNTVKVWDVRTHRLLQHYQLHSAAVNALSFHPSGNYLLTAS 248

Query: 740 DDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHF 853
            D  +KI D+    L  TL GH      VAF     +F
Sbjct: 249 SDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYF 286



 Score = 75.9 bits (185), Expect = 5e-14
 Identities = 54/195 (27%), Positives = 89/195 (45%), Gaps = 1/195 (0%)
 Frame = +2

Query: 266 EKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWT 445
           E   L+   +GH+  + SVD S      AS S+D+ + +W ++   +     AG  DA T
Sbjct: 7   EDPSLERHFKGHRDAITSVDFSLNTKQLASGSMDSCLMVWHMKPQSRAYRF-AGHKDAVT 65

Query: 446 -LAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDG 622
            + FSP    LA+G+    V I+      +          + S+ +  DG+ L + + D 
Sbjct: 66  CVNFSPSGHLLASGSRDKTVRIWIPNVKGESTVFRAHTATVRSVHFCSDGQSLVTASDDK 125

Query: 623 IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG 802
            + ++     K L +L  H   +R   FSPD +L+V+ASDD  +K++D        +   
Sbjct: 126 TVKVWSTHRQKFLFSLSQHINWVRCARFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCE 185

Query: 803 HASWVLNVAFCPDDT 847
           H  +V  V F P  T
Sbjct: 186 HGGFVTYVDFHPSGT 200



 Score = 69.7 bits (169), Expect = 4e-12
 Identities = 42/160 (26%), Positives = 70/160 (43%)
 Frame = +2

Query: 452 FSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 631
           FS +++ LA+G+    + ++ ++   + Y        +  + +SP G  LASG+ D  + 
Sbjct: 27  FSLNTKQLASGSMDSCLMVWHMKPQSRAYRFAGHKDAVTCVNFSPSGHLLASGSRDKTVR 86

Query: 632 IFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS 811
           I+             H   +RS+ F  D Q LVTASDD  +K++         +LS H +
Sbjct: 87  IWIPNVKGESTVFRAHTATVRSVHFCSDGQSLVTASDDKTVKVWSTHRQKFLFSLSQHIN 146

Query: 812 WVLNVAFCPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDH 931
           WV    F PD                   +R CVH++ +H
Sbjct: 147 WVRCARFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEH 186



 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 44/187 (23%), Positives = 82/187 (43%)
 Frame = +2

Query: 203 NSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 382
           + +++VT S D  VKVW    +K    +SL  H   V     S    +  S+S D  ++L
Sbjct: 114 DGQSLVTASDDKTVKVWSTHRQKF--LFSLSQHINWVRCARFSPDGRLIVSASDDKTVKL 171

Query: 383 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKF 562
           WD  + + + S          + F P    +A  +    V ++ V + +           
Sbjct: 172 WDKTSRECVHSYCEHGGFVTYVDFHPSGTCIAAASMDNTVKVWDVRTHRLLQHYQLHSAA 231

Query: 563 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 742
           + ++++ P G YL + + D  + I D+  G+LL+TL GH  P  ++ FS   +   +   
Sbjct: 232 VNALSFHPSGNYLLTASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGS 291

Query: 743 DGYIKIY 763
           D  + ++
Sbjct: 292 DEQVMVW 298


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,793,913
Number of extensions: 1230867
Number of successful extensions: 6320
Number of sequences better than 1.0e-05: 186
Number of HSP's gapped: 5539
Number of HSP's successfully gapped: 428
Length of query: 319
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 216
Effective length of database: 15,440,896
Effective search space: 3335233536
Effective search space used: 3335233536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008329
         (959 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_001927037.1| PREDICTED: WD repeat-containing protein 61 [...   548   e-156
Alignment   gi|XP_001927989.1| PREDICTED: TAF5-like RNA polymerase II p300/...   107   1e-23
Alignment   gi|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [S...   102   4e-22
Alignment   gi|XP_003353713.1| PREDICTED: WD repeat-containing protein 38-l...    93   2e-19
Alignment   gi|XP_001927805.1| PREDICTED: WD repeat-containing protein 38-l...    93   2e-19
Alignment   gi|XP_001929370.2| PREDICTED: transcription initiation factor T...    91   9e-19
Alignment   gi|XP_003358201.1| PREDICTED: notchless protein homolog 1 [Sus ...    90   2e-18
Alignment   gi|XP_003132294.2| PREDICTED: POC1 centriolar protein homolog A...    86   4e-17
Alignment   gi|XP_003358840.1| PREDICTED: WD repeat-containing protein 5B-l...    84   1e-16
Alignment   gi|XP_003360782.1| PREDICTED: POC1 centriolar protein homolog B...    80   1e-15

>ref|XP_001927037.1| PREDICTED: WD repeat-containing protein 61 [Sus scrofa].
          Length = 305

 Score =  548 bits (1411), Expect = e-156
 Identities = 268/282 (95%), Positives = 268/282 (95%)
 Frame = +2

Query: 113 MTNQYSILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSL 292
           MTNQYSILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSL
Sbjct: 1   MTNQYSILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSL 60

Query: 293 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 472
           EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY
Sbjct: 61  EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 120

Query: 473 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 652
           LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG
Sbjct: 121 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 180

Query: 653 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 832
           KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF
Sbjct: 181 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 240

Query: 833 CPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQDQVWGVKY 958
           CPDDTHF              GTRTCVHTFFDHQDQVWGVKY
Sbjct: 241 CPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKY 282



 Score = 84.7 bits (208), Expect = 7e-17
 Identities = 49/196 (25%), Positives = 96/196 (48%)
 Frame = +2

Query: 179 AWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASS 358
           AW      +S+ + TG+    V ++     K +  +SL+     ++S+  S      AS 
Sbjct: 109 AWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE--YSLDTRGKFILSIAYSPDGKYLASG 166

Query: 359 SLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY 538
           ++D  I ++D+  GK + +++   +   +L FSPDSQ L T +  G + I+ V+      
Sbjct: 167 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG 226

Query: 539 SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS 718
           +L     ++L++A+ PD  +  S + D  + ++D+ T   +HT   H   +  + ++ + 
Sbjct: 227 TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNG 286

Query: 719 QLLVTASDDGYIKIYD 766
             +V+  DD  I IYD
Sbjct: 287 SKIVSVGDDQEIHIYD 302


>ref|XP_001927989.1| PREDICTED: TAF5-like RNA polymerase II p300/CBP-associated
           factor-associated factor 65 kDa subunit 5L [Sus scrofa].
          Length = 589

 Score =  107 bits (266), Expect = 1e-23
 Identities = 61/178 (34%), Positives = 94/178 (52%)
 Frame = +2

Query: 293 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 472
           +GH   V  VDIS      AS S D   RLW  +    ++       D   + F P+S Y
Sbjct: 381 QGHAYPVWDVDISPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNY 440

Query: 473 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 652
           LATG+    V ++  + G            +LS+A+SP+GKYLAS   D  + ++D+A+G
Sbjct: 441 LATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASG 500

Query: 653 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNV 826
            L   L GH   I SLTFSPDS L+ +AS D  ++++D+++ + +    G +S ++ V
Sbjct: 501 TLFKELRGHTDNITSLTFSPDSSLIASASMDNSVRVWDIRNTHCSAPTDGSSSELVGV 558



 Score = 78.6 bits (192), Expect = 5e-15
 Identities = 45/168 (26%), Positives = 76/168 (45%), Gaps = 3/168 (1%)
 Frame = +2

Query: 353 SSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 532
           S S D  IR WDL +              W +  SP S Y A+G+H     ++  +   +
Sbjct: 359 SCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDVDISPYSLYFASGSHDRTARLWSFD---R 415

Query: 533 EYSLDTRGKFILSI---AYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT 703
            Y L      +  +    + P+  YLA+G+ D  + ++    G  +    GH  P+ SL 
Sbjct: 416 TYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLA 475

Query: 704 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDT 847
           FSP+ + L +A +D  +K++D+    L   L GH   + ++ F PD +
Sbjct: 476 FSPNGKYLASAGEDQRLKLWDLASGTLFKELRGHTDNITSLTFSPDSS 523



 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 30/107 (28%), Positives = 53/107 (49%)
 Frame = +2

Query: 203 NSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 382
           NS  + TGS D  V++W  +       ++  GH+  V+S+  S      AS+  D  ++L
Sbjct: 437 NSNYLATGSTDKTVRLWSAQQGNSVRLFT--GHRGPVLSLAFSPNGKYLASAGEDQRLKL 494

Query: 383 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES 523
           WDL +G   K +     +  +L FSPDS  +A+ +    V ++ + +
Sbjct: 495 WDLASGTLFKELRGHTDNITSLTFSPDSSLIASASMDNSVRVWDIRN 541


>ref|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [Sus scrofa].
          Length = 334

 Score =  102 bits (253), Expect = 4e-22
 Identities = 60/218 (27%), Positives = 113/218 (51%), Gaps = 1/218 (0%)
 Frame = +2

Query: 155 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISH 334
           H  A+ SV +  N     E + + S D L+K+W   D K +   ++ GH+LG+  V  S 
Sbjct: 44  HTKAVSSVKFSPN----GEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSS 97

Query: 335 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 514
              +  S+S D  +++WD+ +GK +K++       +   F+P S  + +G+    V I+ 
Sbjct: 98  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 157

Query: 515 VESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL-EGHAMPI 691
           V++GK   +L      + ++ ++ DG  + S + DG+  I+D A+G+ L TL +    P+
Sbjct: 158 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 217

Query: 692 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH 805
             + FSP+ + ++ A+ D  +K++D        T +GH
Sbjct: 218 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 255



 Score = 95.5 bits (236), Expect = 4e-20
 Identities = 61/222 (27%), Positives = 105/222 (47%), Gaps = 1/222 (0%)
 Frame = +2

Query: 278 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS 457
           L+++L GH   V SV  S      ASSS D  I++W   +GK  K+I    +    +A+S
Sbjct: 37  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 96

Query: 458 PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIF 637
            DS  L + +    + I+ V SGK   +L     ++    ++P    + SG+ D  + I+
Sbjct: 97  SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156

Query: 638 DIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWV 817
           D+ TGK L TL  H+ P+ ++ F+ D  L+V++S DG  +I+D        TL    +  
Sbjct: 157 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 216

Query: 818 LN-VAFCPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQDQ 940
           ++ V F P+  +                   C+ T+  H+++
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 258



 Score = 72.8 bits (177), Expect = 3e-13
 Identities = 52/199 (26%), Positives = 99/199 (49%), Gaps = 8/199 (4%)
 Frame = +2

Query: 191 NKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 370
           N    S  +V+GS D+ V++W  +  K     +L  H   V +V  +    +  SSS D 
Sbjct: 136 NFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193

Query: 371 HIRLWDLENGKQIKSI---DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK--KE 535
             R+WD  +G+ +K++   D  PV    + FSP+ +Y+   T    + ++    GK  K 
Sbjct: 194 LCRIWDTASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 251

Query: 536 YSLDTRGKFILSIAYS-PDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP 712
           Y+     K+ +   +S   GK++ SG+ D ++ I+++ T +++  L+GH   + S    P
Sbjct: 252 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 311

Query: 713 DSQLLVTAS--DDGYIKIY 763
              ++ +A+  +D  IK++
Sbjct: 312 TENIIASAALENDKTIKLW 330


>ref|XP_003353713.1| PREDICTED: WD repeat-containing protein 38-like [Sus scrofa].
          Length = 312

 Score = 93.2 bits (230), Expect = 2e-19
 Identities = 71/216 (32%), Positives = 108/216 (50%), Gaps = 3/216 (1%)
 Frame = +2

Query: 203 NSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 382
           + + ++T S D  V  W+ +  +L   W L GH   V     S    + AS+S D  IRL
Sbjct: 32  DGQRLLTASEDGCVYGWETQSGRL--LWKLGGHTGPVKFCRFSPDGRLFASTSSDCTIRL 89

Query: 383 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKF 562
           WD+   + ++ +        T++FSPDS+ LA+G    +V ++ V+SG+    L      
Sbjct: 90  WDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDS 149

Query: 563 ILSIAYSPDGKYLASGAIDGIINIFDI--ATGKLLH-TLEGHAMPIRSLTFSPDSQLLVT 733
           I S  ++P    LA+G+ D  I ++D+   TG + H  LEGH   I  L FS    LL +
Sbjct: 150 IQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLAS 208

Query: 734 ASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
            S D  I I+     +L   L GH +WV ++AF PD
Sbjct: 209 GSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPD 244



 Score = 80.1 bits (196), Expect = 2e-15
 Identities = 56/198 (28%), Positives = 92/198 (46%), Gaps = 3/198 (1%)
 Frame = +2

Query: 257 WRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVD 436
           W   K++    L+GHQ  V +V  S      AS   D  + LW++++G+ ++ +      
Sbjct: 90  WDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDS 149

Query: 437 AWTLAFSPDSQYLATGTHVGKVNIFGVESGKK---EYSLDTRGKFILSIAYSPDGKYLAS 607
             +  F+P S  LATG+    + ++ +  G        L+     I  + +S  G  LAS
Sbjct: 150 IQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLAS 208

Query: 608 GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA 787
           G+ D  I+I+  +T  LL  L+GH   ++S+ FSPD   L +A     +K++D       
Sbjct: 209 GSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCT 268

Query: 788 GTLSGHASWVLNVAFCPD 841
            TL G      + AF PD
Sbjct: 269 DTLKGVLDVAHSCAFTPD 286



 Score = 71.2 bits (173), Expect = 8e-13
 Identities = 40/129 (31%), Positives = 67/129 (51%)
 Frame = +2

Query: 452 FSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 631
           FSPD Q L T +  G V  +  +SG+  + L      +    +SPDG+  AS + D  I 
Sbjct: 29  FSPDGQRLLTASEDGCVYGWETQSGRLLWKLGGHTGPVKFCRFSPDGRLFASTSSDCTIR 88

Query: 632 IFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS 811
           ++D+A  + L  L+GH   + +++FSPDS+ L +   D  + +++VQ   +   L GH  
Sbjct: 89  LWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRD 148

Query: 812 WVLNVAFCP 838
            + +  F P
Sbjct: 149 SIQSSDFAP 157



 Score = 68.9 bits (167), Expect = 4e-12
 Identities = 53/202 (26%), Positives = 97/202 (48%), Gaps = 3/202 (1%)
 Frame = +2

Query: 149 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDI 328
           + H  ++ +V++  + K+    + +G  D  V +W+ +  ++     L GH+  + S D 
Sbjct: 102 KGHQRSVETVSFSPDSKQ----LASGGWDKRVMLWEVQSGQVLRH--LVGHRDSIQSSDF 155

Query: 329 SHTLPIAASSSLDAHIRLWDLENGKQI---KSIDAGPVDAWTLAFSPDSQYLATGTHVGK 499
           + +    A+ S D+ IR+WDL  G      + ++    +   L FS     LA+G+    
Sbjct: 156 APSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLASGSWDKT 214

Query: 500 VNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH 679
           ++I+   +      L     ++ SIA+SPDG  LAS      + ++D  TG+   TL+G 
Sbjct: 215 IHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGV 274

Query: 680 AMPIRSLTFSPDSQLLVTASDD 745
                S  F+PD +LLV+ + D
Sbjct: 275 LDVAHSCAFTPDGKLLVSGTAD 296



 Score = 66.6 bits (161), Expect = 2e-11
 Identities = 36/106 (33%), Positives = 58/106 (54%)
 Frame = +2

Query: 524 GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT 703
           G+ ++    RG+ + S  +SPDG+ L + + DG +  ++  +G+LL  L GH  P++   
Sbjct: 12  GRVKFYCRHRGE-VNSSTFSPDGQRLLTASEDGCVYGWETQSGRLLWKLGGHTGPVKFCR 70

Query: 704 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
           FSPD +L  + S D  I+++DV        L GH   V  V+F PD
Sbjct: 71  FSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPD 116


>ref|XP_001927805.1| PREDICTED: WD repeat-containing protein 38-like [Sus scrofa].
          Length = 312

 Score = 93.2 bits (230), Expect = 2e-19
 Identities = 71/216 (32%), Positives = 108/216 (50%), Gaps = 3/216 (1%)
 Frame = +2

Query: 203 NSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 382
           + + ++T S D  V  W+ +  +L   W L GH   V     S    + AS+S D  IRL
Sbjct: 32  DGQRLLTASEDGCVYGWETQSGRL--LWKLGGHTGPVKFCRFSPDGRLFASTSSDCTIRL 89

Query: 383 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKF 562
           WD+   + ++ +        T++FSPDS+ LA+G    +V ++ V+SG+    L      
Sbjct: 90  WDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDS 149

Query: 563 ILSIAYSPDGKYLASGAIDGIINIFDI--ATGKLLH-TLEGHAMPIRSLTFSPDSQLLVT 733
           I S  ++P    LA+G+ D  I ++D+   TG + H  LEGH   I  L FS    LL +
Sbjct: 150 IQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLAS 208

Query: 734 ASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
            S D  I I+     +L   L GH +WV ++AF PD
Sbjct: 209 GSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPD 244



 Score = 80.1 bits (196), Expect = 2e-15
 Identities = 56/198 (28%), Positives = 92/198 (46%), Gaps = 3/198 (1%)
 Frame = +2

Query: 257 WRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVD 436
           W   K++    L+GHQ  V +V  S      AS   D  + LW++++G+ ++ +      
Sbjct: 90  WDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDS 149

Query: 437 AWTLAFSPDSQYLATGTHVGKVNIFGVESGKK---EYSLDTRGKFILSIAYSPDGKYLAS 607
             +  F+P S  LATG+    + ++ +  G        L+     I  + +S  G  LAS
Sbjct: 150 IQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLAS 208

Query: 608 GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA 787
           G+ D  I+I+  +T  LL  L+GH   ++S+ FSPD   L +A     +K++D       
Sbjct: 209 GSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCT 268

Query: 788 GTLSGHASWVLNVAFCPD 841
            TL G      + AF PD
Sbjct: 269 DTLKGVLDVAHSCAFTPD 286



 Score = 71.2 bits (173), Expect = 8e-13
 Identities = 40/129 (31%), Positives = 67/129 (51%)
 Frame = +2

Query: 452 FSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 631
           FSPD Q L T +  G V  +  +SG+  + L      +    +SPDG+  AS + D  I 
Sbjct: 29  FSPDGQRLLTASEDGCVYGWETQSGRLLWKLGGHTGPVKFCRFSPDGRLFASTSSDCTIR 88

Query: 632 IFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS 811
           ++D+A  + L  L+GH   + +++FSPDS+ L +   D  + +++VQ   +   L GH  
Sbjct: 89  LWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRD 148

Query: 812 WVLNVAFCP 838
            + +  F P
Sbjct: 149 SIQSSDFAP 157



 Score = 68.9 bits (167), Expect = 4e-12
 Identities = 53/202 (26%), Positives = 97/202 (48%), Gaps = 3/202 (1%)
 Frame = +2

Query: 149 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDI 328
           + H  ++ +V++  + K+    + +G  D  V +W+ +  ++     L GH+  + S D 
Sbjct: 102 KGHQRSVETVSFSPDSKQ----LASGGWDKRVMLWEVQSGQVLRH--LVGHRDSIQSSDF 155

Query: 329 SHTLPIAASSSLDAHIRLWDLENGKQI---KSIDAGPVDAWTLAFSPDSQYLATGTHVGK 499
           + +    A+ S D+ IR+WDL  G      + ++    +   L FS     LA+G+    
Sbjct: 156 APSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLASGSWDKT 214

Query: 500 VNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH 679
           ++I+   +      L     ++ SIA+SPDG  LAS      + ++D  TG+   TL+G 
Sbjct: 215 IHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGV 274

Query: 680 AMPIRSLTFSPDSQLLVTASDD 745
                S  F+PD +LLV+ + D
Sbjct: 275 LDVAHSCAFTPDGKLLVSGTAD 296



 Score = 66.6 bits (161), Expect = 2e-11
 Identities = 36/106 (33%), Positives = 58/106 (54%)
 Frame = +2

Query: 524 GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT 703
           G+ ++    RG+ + S  +SPDG+ L + + DG +  ++  +G+LL  L GH  P++   
Sbjct: 12  GRVKFYCRHRGE-VNSSTFSPDGQRLLTASEDGCVYGWETQSGRLLWKLGGHTGPVKFCR 70

Query: 704 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
           FSPD +L  + S D  I+++DV        L GH   V  V+F PD
Sbjct: 71  FSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPD 116


>ref|XP_001929370.2| PREDICTED: transcription initiation factor TFIID subunit 5 [Sus
            scrofa].
          Length = 662

 Score = 90.9 bits (224), Expect = 9e-19
 Identities = 62/232 (26%), Positives = 100/232 (43%), Gaps = 7/232 (3%)
 Frame = +2

Query: 167  IWSVAWGTNKKENSE------TVVTGSLDDLVKVWKWRDEKLDLQWS-LEGHQLGVVSVD 325
            +WSV   T KK  S       +++    DD+++  +  DEK   +   L GH   V    
Sbjct: 358  VWSV---TPKKLRSVKQAADLSLIDKESDDVLE--RIMDEKTASELKILYGHSGPVYGAS 412

Query: 326  ISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVN 505
             S       SSS D  +RLW L+    +          W   FSP   Y  +G H     
Sbjct: 413  FSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVAR 472

Query: 506  IFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAM 685
            ++  +  +           +    + P+  Y+A+G+ D  + ++D+  G  +    GH  
Sbjct: 473  LWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKG 532

Query: 686  PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
            PI SLTFSP+ + L T + DG + ++D+ H  + G L GH   V ++ F  D
Sbjct: 533  PIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRD 584



 Score = 78.2 bits (191), Expect = 6e-15
 Identities = 52/199 (26%), Positives = 93/199 (46%)
 Frame = +2

Query: 182 WGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSS 361
           +G +   +   +++ S D  V++W    +        +GH   V     S       S  
Sbjct: 409 YGASFSPDRNYLLSSSEDGTVRLWSL--QTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGG 466

Query: 362 LDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS 541
            D   RLW  ++ + ++       D     F P+S Y+ATG+    V ++ V +G     
Sbjct: 467 HDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRI 526

Query: 542 LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ 721
                  I S+ +SP+G++LA+GA DG + ++DI  G ++  L+GH   + SL FS D +
Sbjct: 527 FTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGE 586

Query: 722 LLVTASDDGYIKIYDVQHA 778
           +L + S D  ++++D   A
Sbjct: 587 ILASGSMDNTVRLWDAVKA 605



 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 42/219 (19%), Positives = 82/219 (37%), Gaps = 2/219 (0%)
 Frame = +2

Query: 308 GVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS--QYLAT 481
           G+ +VD++    + A    D+ +R+W +   K+++S+     D   +    D   + +  
Sbjct: 334 GLTAVDVTDDSSLIAGGFADSTVRVWSV-TPKKLRSVKQA-ADLSLIDKESDDVLERIMD 391

Query: 482 GTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLL 661
                ++ I    SG            +   ++SPD  YL S + DG + ++ + T   L
Sbjct: 392 EKTASELKILYGHSGP-----------VYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCL 440

Query: 662 HTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
              +GH  P+    FSP     V+   D   +++   H       +GH + V    F P+
Sbjct: 441 VGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPN 500

Query: 842 DTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQDQVWGVKY 958
             +                   CV  F  H+  +  + +
Sbjct: 501 SNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTF 539


>ref|XP_003358201.1| PREDICTED: notchless protein homolog 1 [Sus scrofa].
          Length = 485

 Score = 90.1 bits (222), Expect = 2e-18
 Identities = 59/191 (30%), Positives = 95/191 (49%), Gaps = 6/191 (3%)
 Frame = +2

Query: 287 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS 466
           SLEGH   V+SV  S T    AS S D  +R WDL       +         ++++SPD 
Sbjct: 109 SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 168

Query: 467 QYLATGTHVGKVNIFGVESGKKE-YSLDTRGKFILSIAY-----SPDGKYLASGAIDGII 628
           + LA+G   G++ ++   +GK+   +L    K+I ++++     +P+ +Y+AS + DG +
Sbjct: 169 KKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSV 228

Query: 629 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 808
            ++D   G+    L GH   +  L +  D  LL +AS D  IK++      L  TL GH 
Sbjct: 229 RVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRTLQGHG 287

Query: 809 SWVLNVAFCPD 841
            WV  +A   D
Sbjct: 288 HWVNTMALSTD 298



 Score = 90.1 bits (222), Expect = 2e-18
 Identities = 60/230 (26%), Positives = 106/230 (46%), Gaps = 1/230 (0%)
 Frame = +2

Query: 155 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISH 334
           H  ++  + WG         + + S D  +KVW+  D  L       GH +  +++   +
Sbjct: 245 HTQSVTCLRWG-----GDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDY 299

Query: 335 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 514
            L   A    +A +   DL    Q   +    +  + L      + L +G+    + ++ 
Sbjct: 300 ALRTGAFEPAEASVNAQDLRGSLQ--ELKERALSRYNLVRGRGLERLVSGSDDFTLFLWS 357

Query: 515 VESGKKEYSLDTRGKFILS-IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI 691
               KK  +  T  + +++ + +SPD + +AS + D  I ++D  TGK L +L GH   +
Sbjct: 358 PAEDKKPLARMTGHQALINQVLFSPDSRIIASASFDKSIKLWDGRTGKYLASLRGHVAAV 417

Query: 692 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
             + +S DS+LLV+ S D  +K++DV+   LA  L GHA  V  V + PD
Sbjct: 418 YQIAWSADSRLLVSGSSDSTLKVWDVKAQKLAADLPGHADEVYAVDWSPD 467



 Score = 68.6 bits (166), Expect = 5e-12
 Identities = 43/143 (30%), Positives = 74/143 (51%)
 Frame = +2

Query: 209 ETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWD 388
           E +V+GS D  + +W   ++K  L   + GHQ  +  V  S    I AS+S D  I+LWD
Sbjct: 342 ERLVSGSDDFTLFLWSPAEDKKPLA-RMTGHQALINQVLFSPDSRIIASASFDKSIKLWD 400

Query: 389 LENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFIL 568
              GK + S+       + +A+S DS+ L +G+    + ++ V++ K    L      + 
Sbjct: 401 GRTGKYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLAADLPGHADEVY 460

Query: 569 SIAYSPDGKYLASGAIDGIINIF 637
           ++ +SPDG+ +ASG  D  + I+
Sbjct: 461 AVDWSPDGQRVASGGKDKCLRIW 483



 Score = 65.5 bits (158), Expect = 4e-11
 Identities = 54/199 (27%), Positives = 89/199 (44%), Gaps = 7/199 (3%)
 Frame = +2

Query: 149 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDI 328
           + H +A+ SVA+    K     + +GS D  V+ W    E     ++ +GH+  V+S+  
Sbjct: 111 EGHSEAVISVAFSPTGKY----LASGSGDTTVRFWDLSTETP--HFTCQGHRHWVLSISW 164

Query: 329 SHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS-------PDSQYLATGT 487
           S      AS   +  I LWD   GKQ+    AG    W  A S       P+ +Y+A+ +
Sbjct: 165 SPDGKKLASGCKNGQILLWDPSTGKQVGRALAGH-SKWITALSWEPLHANPECRYVASSS 223

Query: 488 HVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHT 667
             G V ++   +G+ E  L    + +  + +  DG  L S + D  I ++    G L  T
Sbjct: 224 KDGSVRVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRT 282

Query: 668 LEGHAMPIRSLTFSPDSQL 724
           L+GH   + ++  S D  L
Sbjct: 283 LQGHGHWVNTMALSTDYAL 301


>ref|XP_003132294.2| PREDICTED: POC1 centriolar protein homolog A-like [Sus scrofa].
          Length = 344

 Score = 85.5 bits (210), Expect = 4e-17
 Identities = 64/277 (23%), Positives = 116/277 (41%), Gaps = 42/277 (15%)
 Frame = +2

Query: 149 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDI 328
           + H DA+  V +  N K+    + +GS+D  + VW  + +    +++  GH+  V  V+ 
Sbjct: 16  KGHRDAVTCVDFSFNMKQ----LASGSMDSCLMVWHMKPQSRAYRFT--GHKDAVTCVNF 69

Query: 329 SHTLPIAASSSLDAHIRLWD----------------------LENGKQ-IKSIDAGPVDA 439
           S +  + AS S D  +R+W                         +G+  + + D   +  
Sbjct: 70  SPSGHLLASGSRDKTVRIWVPNIKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTIKV 129

Query: 440 WTL-------------------AFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKF 562
           W+                     FSPD + + + +    V ++   S +  +S    G F
Sbjct: 130 WSTHRQKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEHGGF 189

Query: 563 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 742
           +  + + P G  +A+  +D  + ++D+ T +LL   + H+  + +L+F P    LVTAS 
Sbjct: 190 VTYVDFHPSGTCVAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNALSFHPSGNYLVTASS 249

Query: 743 DGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHF 853
           D  +KI D+    L  TL GH      VAF     +F
Sbjct: 250 DSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYF 286



 Score = 73.9 bits (180), Expect = 1e-13
 Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 1/195 (0%)
 Frame = +2

Query: 266 EKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWT 445
           E   L+   +GH+  V  VD S  +   AS S+D+ + +W ++   +      G  DA T
Sbjct: 7   EDPSLERHFKGHRDAVTCVDFSFNMKQLASGSMDSCLMVWHMKPQSRAYRF-TGHKDAVT 65

Query: 446 -LAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDG 622
            + FSP    LA+G+    V I+      +          + S+ +  DG+   + + D 
Sbjct: 66  CVNFSPSGHLLASGSRDKTVRIWVPNIKGESTVFRAHTATVRSVHFCSDGQSFVTASDDK 125

Query: 623 IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG 802
            I ++     K L +L  H   +R   FSPD +L+V+ASDD  +K++D        +   
Sbjct: 126 TIKVWSTHRQKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCE 185

Query: 803 HASWVLNVAFCPDDT 847
           H  +V  V F P  T
Sbjct: 186 HGGFVTYVDFHPSGT 200



 Score = 65.9 bits (159), Expect = 3e-11
 Identities = 43/187 (22%), Positives = 80/187 (42%)
 Frame = +2

Query: 203 NSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 382
           + ++ VT S D  +KVW    +K    +SL  H   V     S    +  S+S D  ++L
Sbjct: 114 DGQSFVTASDDKTIKVWSTHRQKF--LFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKL 171

Query: 383 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKF 562
           WD  + + + S          + F P    +A       V ++ V + +           
Sbjct: 172 WDKTSRECVHSYCEHGGFVTYVDFHPSGTCVAAAGMDNTVKVWDVRTHRLLQHYQLHSAA 231

Query: 563 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 742
           + ++++ P G YL + + D  + I D+  G+LL+TL GH  P  ++ FS   +   +   
Sbjct: 232 VNALSFHPSGNYLVTASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGS 291

Query: 743 DGYIKIY 763
           D  + ++
Sbjct: 292 DEQVMVW 298


>ref|XP_003358840.1| PREDICTED: WD repeat-containing protein 5B-like [Sus scrofa].
          Length = 330

 Score = 84.0 bits (206), Expect = 1e-16
 Identities = 56/222 (25%), Positives = 102/222 (45%), Gaps = 1/222 (0%)
 Frame = +2

Query: 278 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS 457
           L+++L GH   V SV  S      ASSS D  I +W   +GK  K++    ++   +A+S
Sbjct: 33  LKFTLVGHTEAVSSVKFSPNGEWLASSSADKVIIIWGAYDGKYEKALKGHSLEISDVAWS 92

Query: 458 PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIF 637
            DS  L + +    + I+ V  GK   +L     ++    ++P    + SG+ D  + I+
Sbjct: 93  SDSGRLVSASDDKTLKIWDVRVGKCLKTLKGHSNYVFCCNFNPPSNLIISGSFDESVKIW 152

Query: 638 DIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWV 817
           ++ TG+ L TL  H+ P+ ++ F+    L+V+ S DG  +I+D        TL    +  
Sbjct: 153 EVKTGRCLKTLSAHSDPVSAVHFNCKGSLIVSGSYDGVCRIWDAASGQCLKTLVDDDNPP 212

Query: 818 LN-VAFCPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQDQ 940
           ++ V F P+  +                   C+ T+  H+++
Sbjct: 213 ISFVKFSPNGKYILIATLDNTLKLWDYSRGRCLKTYTGHKNE 254



 Score = 81.6 bits (200), Expect = 6e-16
 Identities = 60/239 (25%), Positives = 114/239 (47%), Gaps = 4/239 (1%)
 Frame = +2

Query: 140 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVS 319
           K  + H   I  VAW ++    S  +V+ S D  +K+W  R  K     +L+GH   V  
Sbjct: 77  KALKGHSLEISDVAWSSD----SGRLVSASDDKTLKIWDVRVGKC--LKTLKGHSNYVFC 130

Query: 320 VDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGK 499
            + +    +  S S D  +++W+++ G+ +K++ A       + F+     + +G++ G 
Sbjct: 131 CNFNPPSNLIISGSFDESVKIWEVKTGRCLKTLSAHSDPVSAVHFNCKGSLIVSGSYDGV 190

Query: 500 VNIFGVESGKKEYSL-DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG 676
             I+   SG+   +L D     I  + +SP+GKY+    +D  + ++D + G+ L T  G
Sbjct: 191 CRIWDAASGQCLKTLVDDDNPPISFVKFSPNGKYILIATLDNTLKLWDYSRGRCLKTYTG 250

Query: 677 HAMPIRSL--TFSPDS-QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD 844
           H      +   FS  S + +V+ S+D  + I+++Q   +   L GH   V++ A  P +
Sbjct: 251 HKNEKYCIFANFSVTSGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACHPTE 309



 Score = 67.8 bits (164), Expect = 9e-12
 Identities = 46/194 (23%), Positives = 98/194 (50%), Gaps = 8/194 (4%)
 Frame = +2

Query: 206 SETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLW 385
           S  +++GS D+ VK+W+ +  +     +L  H   V +V  +    +  S S D   R+W
Sbjct: 137 SNLIISGSFDESVKIWEVKTGRC--LKTLSAHSDPVSAVHFNCKGSLIVSGSYDGVCRIW 194

Query: 386 DLENGKQIKSI---DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK--KEYSLDT 550
           D  +G+ +K++   D  P+    + FSP+ +Y+   T    + ++    G+  K Y+   
Sbjct: 195 DAASGQCLKTLVDDDNPPISF--VKFSPNGKYILIATLDNTLKLWDYSRGRCLKTYTGHK 252

Query: 551 RGKFILSIAYS-PDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLL 727
             K+ +   +S   GK++ SG+ D ++ I+++ T +++  L+GH   + S    P   ++
Sbjct: 253 NEKYCIFANFSVTSGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACHPTENII 312

Query: 728 VTAS--DDGYIKIY 763
            +A+  +D  +K++
Sbjct: 313 ASAALGNDKTVKLW 326


>ref|XP_003360782.1| PREDICTED: POC1 centriolar protein homolog B-like, partial [Sus
           scrofa].
          Length = 416

 Score = 80.5 bits (197), Expect = 1e-15
 Identities = 64/246 (26%), Positives = 99/246 (40%), Gaps = 42/246 (17%)
 Frame = +2

Query: 221 TGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENG 400
           TGS D  + +W ++ +    ++   GH+  V SV  S    + AS+S D  +RLW  +  
Sbjct: 80  TGSWDTFLMLWSFKPQARAFRYV--GHKDVVTSVQFSPLGNLLASASRDRTVRLWIPDKR 137

Query: 401 KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL------------ 544
            +     A      ++ FS D Q+LAT +    +        +  YSL            
Sbjct: 138 GKSSEFKAHTAPVRSVDFSADGQFLATASEDKSIXXXXXHRQRFLYSLYRHTHWVRCAKF 197

Query: 545 -------------------DTRGK-----------FILSIAYSPDGKYLASGAIDGIINI 634
                              DT  K           F   + ++P+G  +AS   D  + I
Sbjct: 198 SPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDFVGFANFVDFNPNGTCIASAGSDHTVKI 257

Query: 635 FDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASW 814
           +DI   KLL   + H+  +  ++F P    L+TAS DG +KI D+    L  TL GH   
Sbjct: 258 WDIRVNKLLQHYQVHSGGVNCVSFHPSGNYLITASSDGTLKILDLLEGRLIYTLQGHTGP 317

Query: 815 VLNVAF 832
           V  V+F
Sbjct: 318 VFTVSF 323



 Score = 64.7 bits (156), Expect = 7e-11
 Identities = 38/160 (23%), Positives = 73/160 (45%)
 Frame = +2

Query: 284 WSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPD 463
           +SL  H   V     S    +  S S D  I++WD  N + + +       A  + F+P+
Sbjct: 183 YSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDFVGFANFVDFNPN 242

Query: 464 SQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDI 643
              +A+      V I+ +   K           +  +++ P G YL + + DG + I D+
Sbjct: 243 GTCIASAGSDHTVKIWDIRVNKLLQHYQVHSGGVNCVSFHPSGNYLITASSDGTLKILDL 302

Query: 644 ATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIY 763
             G+L++TL+GH  P+ +++FS   +L  +   D  + ++
Sbjct: 303 LEGRLIYTLQGHTGPVFTVSFSKGGELFTSGGADAQVLLW 342


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,454,786
Number of extensions: 766321
Number of successful extensions: 3890
Number of sequences better than 1.0e-05: 98
Number of HSP's gapped: 3466
Number of HSP's successfully gapped: 228
Length of query: 319
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 220
Effective length of database: 8,879,129
Effective search space: 1953408380
Effective search space used: 1953408380
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008329
         (959 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001020546.1| WD repeat-containing protein 61 isoform a [M...   537   e-153
Alignment   gi|NP_075680.1| WD repeat-containing protein 61 isoform a [Mus ...   537   e-153
Alignment   gi|NP_001020547.1| WD repeat-containing protein 61 isoform b [M...   344   5e-95
Alignment   gi|NP_083963.1| WD repeat-containing protein 38 [Mus musculus].      103   3e-22
Alignment   gi|NP_598727.1| TAF5-like RNA polymerase II p300/CBP-associated...   102   4e-22
Alignment   gi|NP_543124.1| WD repeat-containing protein 5 [Mus musculus].       102   6e-22
Alignment   gi|NP_083081.2| katanin p80 WD40-containing subunit B1 [Mus mus...   101   8e-22
Alignment   gi|NP_796316.2| transcription initiation factor TFIID subunit 5...    92   8e-19
Alignment   gi|NP_663406.2| notchless protein homolog 1 [Mus musculus].           91   2e-18
Alignment   gi|NP_081389.1| WD repeat-containing protein 5B [Mus musculus].       89   5e-18

>ref|NP_001020546.1| WD repeat-containing protein 61 isoform a [Mus musculus].
          Length = 305

 Score =  537 bits (1383), Expect = e-153
 Identities = 261/282 (92%), Positives = 266/282 (94%)
 Frame = +2

Query: 113 MTNQYSILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSL 292
           MTNQYSILFKQEQAHDDAIWSVAW TNKKEN ETVVTGSLDDLVKVWKWRDE+L+LQWSL
Sbjct: 1   MTNQYSILFKQEQAHDDAIWSVAWETNKKENIETVVTGSLDDLVKVWKWRDERLELQWSL 60

Query: 293 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 472
           EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQ+KSIDAGPVDAWTLAFSPDSQY
Sbjct: 61  EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQMKSIDAGPVDAWTLAFSPDSQY 120

Query: 473 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 652
           LATGTH+GKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG
Sbjct: 121 LATGTHMGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 180

Query: 653 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 832
           KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF
Sbjct: 181 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 240

Query: 833 CPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQDQVWGVKY 958
           CPDDTHF              GTRTC+HTFFDHQDQVWGVKY
Sbjct: 241 CPDDTHFVSSSSDKSVKVWDVGTRTCIHTFFDHQDQVWGVKY 282



 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 48/196 (24%), Positives = 96/196 (48%)
 Frame = +2

Query: 179 AWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASS 358
           AW      +S+ + TG+    V ++     K +  +SL+     ++S+  S      AS 
Sbjct: 109 AWTLAFSPDSQYLATGTHMGKVNIFGVESGKKE--YSLDTRGKFILSIAYSPDGKYLASG 166

Query: 359 SLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY 538
           ++D  I ++D+  GK + +++   +   +L FSPDSQ L T +  G + I+ V+      
Sbjct: 167 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG 226

Query: 539 SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS 718
           +L     ++L++A+ PD  +  S + D  + ++D+ T   +HT   H   +  + ++ + 
Sbjct: 227 TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCIHTFFDHQDQVWGVKYNGNG 286

Query: 719 QLLVTASDDGYIKIYD 766
             +V+  DD  I +YD
Sbjct: 287 SKIVSVGDDQEIHVYD 302


>ref|NP_075680.1| WD repeat-containing protein 61 isoform a [Mus musculus].
          Length = 305

 Score =  537 bits (1383), Expect = e-153
 Identities = 261/282 (92%), Positives = 266/282 (94%)
 Frame = +2

Query: 113 MTNQYSILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSL 292
           MTNQYSILFKQEQAHDDAIWSVAW TNKKEN ETVVTGSLDDLVKVWKWRDE+L+LQWSL
Sbjct: 1   MTNQYSILFKQEQAHDDAIWSVAWETNKKENIETVVTGSLDDLVKVWKWRDERLELQWSL 60

Query: 293 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 472
           EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQ+KSIDAGPVDAWTLAFSPDSQY
Sbjct: 61  EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQMKSIDAGPVDAWTLAFSPDSQY 120

Query: 473 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 652
           LATGTH+GKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG
Sbjct: 121 LATGTHMGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 180

Query: 653 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 832
           KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF
Sbjct: 181 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 240

Query: 833 CPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQDQVWGVKY 958
           CPDDTHF              GTRTC+HTFFDHQDQVWGVKY
Sbjct: 241 CPDDTHFVSSSSDKSVKVWDVGTRTCIHTFFDHQDQVWGVKY 282



 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 48/196 (24%), Positives = 96/196 (48%)
 Frame = +2

Query: 179 AWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASS 358
           AW      +S+ + TG+    V ++     K +  +SL+     ++S+  S      AS 
Sbjct: 109 AWTLAFSPDSQYLATGTHMGKVNIFGVESGKKE--YSLDTRGKFILSIAYSPDGKYLASG 166

Query: 359 SLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY 538
           ++D  I ++D+  GK + +++   +   +L FSPDSQ L T +  G + I+ V+      
Sbjct: 167 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG 226

Query: 539 SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS 718
           +L     ++L++A+ PD  +  S + D  + ++D+ T   +HT   H   +  + ++ + 
Sbjct: 227 TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCIHTFFDHQDQVWGVKYNGNG 286

Query: 719 QLLVTASDDGYIKIYD 766
             +V+  DD  I +YD
Sbjct: 287 SKIVSVGDDQEIHVYD 302


>ref|NP_001020547.1| WD repeat-containing protein 61 isoform b [Mus musculus].
          Length = 207

 Score =  344 bits (883), Expect = 5e-95
 Identities = 167/184 (90%), Positives = 170/184 (92%)
 Frame = +2

Query: 407 IKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP 586
           +KSIDAGPVDAWTLAFSPDSQYLATGTH+GKVNIFGVESGKKEYSLDTRGKFILSIAYSP
Sbjct: 1   MKSIDAGPVDAWTLAFSPDSQYLATGTHMGKVNIFGVESGKKEYSLDTRGKFILSIAYSP 60

Query: 587 DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYD 766
           DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYD
Sbjct: 61  DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYD 120

Query: 767 VQHANLAGTLSGHASWVLNVAFCPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQDQVW 946
           VQHANLAGTLSGHASWVLNVAFCPDDTHF              GTRTC+HTFFDHQDQVW
Sbjct: 121 VQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCIHTFFDHQDQVW 180

Query: 947 GVKY 958
           GVKY
Sbjct: 181 GVKY 184



 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 48/196 (24%), Positives = 96/196 (48%)
 Frame = +2

Query: 179 AWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASS 358
           AW      +S+ + TG+    V ++     K +  +SL+     ++S+  S      AS 
Sbjct: 11  AWTLAFSPDSQYLATGTHMGKVNIFGVESGKKE--YSLDTRGKFILSIAYSPDGKYLASG 68

Query: 359 SLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY 538
           ++D  I ++D+  GK + +++   +   +L FSPDSQ L T +  G + I+ V+      
Sbjct: 69  AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG 128

Query: 539 SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS 718
           +L     ++L++A+ PD  +  S + D  + ++D+ T   +HT   H   +  + ++ + 
Sbjct: 129 TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCIHTFFDHQDQVWGVKYNGNG 188

Query: 719 QLLVTASDDGYIKIYD 766
             +V+  DD  I +YD
Sbjct: 189 SKIVSVGDDQEIHVYD 204


>ref|NP_083963.1| WD repeat-containing protein 38 [Mus musculus].
          Length = 303

 Score =  103 bits (256), Expect = 3e-22
 Identities = 74/217 (34%), Positives = 110/217 (50%), Gaps = 3/217 (1%)
 Frame = +2

Query: 203 NSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 382
           +  T++T S D  V VW  +  +L   W L GH+  V S   S    + ASSS D  IRL
Sbjct: 37  DGRTLLTASDDGCVYVWGTKSGRL--LWRLAGHRGPVKSCCFSPDGRLIASSSSDHSIRL 94

Query: 383 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKF 562
           WD+   K +  +        T++FSPDS+ LA+G    +  ++ V+SG++ + L      
Sbjct: 95  WDVARSKCLHVLKGHQRSVETVSFSPDSKQLASGGWDKRAIVWEVQSGRRVHLLVGHCDS 154

Query: 563 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLL---HTLEGHAMPIRSLTFSPDSQLLVT 733
           I S  +SP    LA+G+ D  ++I+D+     +   H LEGH   I  L +S  S LL +
Sbjct: 155 IQSSDFSPTSDSLATGSWDSTVHIWDLRASTPVVSYHNLEGHTGNISCLCYSA-SGLLAS 213

Query: 734 ASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD 844
            S D  I ++     NL   L GH  WV ++AF PD+
Sbjct: 214 GSWDKTICVWKPTTNNLPLQLKGHTIWVNSLAFSPDE 250



 Score = 83.2 bits (204), Expect = 3e-16
 Identities = 44/130 (33%), Positives = 71/130 (54%)
 Frame = +2

Query: 449 AFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGII 628
           AFSPD + L T +  G V ++G +SG+  + L      + S  +SPDG+ +AS + D  I
Sbjct: 33  AFSPDGRTLLTASDDGCVYVWGTKSGRLLWRLAGHRGPVKSCCFSPDGRLIASSSSDHSI 92

Query: 629 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 808
            ++D+A  K LH L+GH   + +++FSPDS+ L +   D    +++VQ       L GH 
Sbjct: 93  RLWDVARSKCLHVLKGHQRSVETVSFSPDSKQLASGGWDKRAIVWEVQSGRRVHLLVGHC 152

Query: 809 SWVLNVAFCP 838
             + +  F P
Sbjct: 153 DSIQSSDFSP 162



 Score = 76.3 bits (186), Expect = 3e-14
 Identities = 46/166 (27%), Positives = 75/166 (45%)
 Frame = +2

Query: 446 LAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGI 625
           + ++P +    T   VG+V  +G   G+   S           A+SPDG+ L + + DG 
Sbjct: 1   MEWAPMNIRAPTRLAVGRVRFYGQHHGEVNCS-----------AFSPDGRTLLTASDDGC 49

Query: 626 INIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH 805
           + ++   +G+LL  L GH  P++S  FSPD +L+ ++S D  I+++DV  +     L GH
Sbjct: 50  VYVWGTKSGRLLWRLAGHRGPVKSCCFSPDGRLIASSSSDHSIRLWDVARSKCLHVLKGH 109

Query: 806 ASWVLNVAFCPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQDQV 943
              V  V+F PD                   +   VH    H D +
Sbjct: 110 QRSVETVSFSPDSKQLASGGWDKRAIVWEVQSGRRVHLLVGHCDSI 155



 Score = 61.6 bits (148), Expect = 9e-10
 Identities = 51/201 (25%), Positives = 94/201 (46%), Gaps = 4/201 (1%)
 Frame = +2

Query: 149 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRD-EKLDLQWSLEGHQLGVVSVD 325
           + H  ++ +V++  + K+    + +G  D    VW+ +   ++ L   L GH   + S D
Sbjct: 107 KGHQRSVETVSFSPDSKQ----LASGGWDKRAIVWEVQSGRRVHL---LVGHCDSIQSSD 159

Query: 326 ISHTLPIAASSSLDAHIRLWDLENGKQIKS---IDAGPVDAWTLAFSPDSQYLATGTHVG 496
            S T    A+ S D+ + +WDL     + S   ++    +   L +S  S  LA+G+   
Sbjct: 160 FSPTSDSLATGSWDSTVHIWDLRASTPVVSYHNLEGHTGNISCLCYSA-SGLLASGSWDK 218

Query: 497 KVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG 676
            + ++   +      L     ++ S+A+SPD   LAS      + ++D  TGK L TL+G
Sbjct: 219 TICVWKPTTNNLPLQLKGHTIWVNSLAFSPDELKLASAGYSRTVKVWDCLTGKCLETLKG 278

Query: 677 HAMPIRSLTFSPDSQLLVTAS 739
                 +  F+PD +LLV+ +
Sbjct: 279 MLDVAHACIFTPDGKLLVSGA 299


>ref|NP_598727.1| TAF5-like RNA polymerase II p300/CBP-associated factor-associated
           factor 65 kDa subunit 5L [Mus musculus].
          Length = 589

 Score =  102 bits (254), Expect = 4e-22
 Identities = 64/191 (33%), Positives = 94/191 (49%), Gaps = 11/191 (5%)
 Frame = +2

Query: 293 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 472
           +GH   V  VDIS      AS S D   RLW  +    ++       D   + F P+S Y
Sbjct: 381 QGHAYPVWDVDISPFSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNY 440

Query: 473 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 652
           LATG+    V ++  + G            +LS+++SP+GKYLAS   D  + ++D+A+G
Sbjct: 441 LATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSFSPNGKYLASAGEDQRLKLWDLASG 500

Query: 653 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ-----------HANLAGTLS 799
            L   L GH   I SL FSPDS L+ +AS D  ++++D++              L G  +
Sbjct: 501 TLFKELRGHTDSITSLAFSPDSGLIASASMDNSVRVWDIRSTCCNTPADGSSGELVGVYT 560

Query: 800 GHASWVLNVAF 832
           G  S VL+V F
Sbjct: 561 GQMSNVLSVQF 571



 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 3/166 (1%)
 Frame = +2

Query: 353 SSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 532
           S S D  IR WDL +              W +  SP S Y A+G+H     ++  +   +
Sbjct: 359 SCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDVDISPFSLYFASGSHDRTARLWSFD---R 415

Query: 533 EYSLDTRGKFILSI---AYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT 703
            Y L      +  +    + P+  YLA+G+ D  + ++    G  +    GH  P+ SL+
Sbjct: 416 TYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLS 475

Query: 704 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
           FSP+ + L +A +D  +K++D+    L   L GH   + ++AF PD
Sbjct: 476 FSPNGKYLASAGEDQRLKLWDLASGTLFKELRGHTDSITSLAFSPD 521



 Score = 52.4 bits (124), Expect = 5e-07
 Identities = 32/107 (29%), Positives = 53/107 (49%)
 Frame = +2

Query: 203 NSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 382
           NS  + TGS D  V++W  +       ++  GH+  V+S+  S      AS+  D  ++L
Sbjct: 437 NSNYLATGSTDKTVRLWSAQQGNSVRLFT--GHRGPVLSLSFSPNGKYLASAGEDQRLKL 494

Query: 383 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES 523
           WDL +G   K +        +LAFSPDS  +A+ +    V ++ + S
Sbjct: 495 WDLASGTLFKELRGHTDSITSLAFSPDSGLIASASMDNSVRVWDIRS 541


>ref|NP_543124.1| WD repeat-containing protein 5 [Mus musculus].
          Length = 334

 Score =  102 bits (253), Expect = 6e-22
 Identities = 60/218 (27%), Positives = 113/218 (51%), Gaps = 1/218 (0%)
 Frame = +2

Query: 155 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISH 334
           H  A+ SV +  N     E + + S D L+K+W   D K +   ++ GH+LG+  V  S 
Sbjct: 44  HTKAVSSVKFSPN----GEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSS 97

Query: 335 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 514
              +  S+S D  +++WD+ +GK +K++       +   F+P S  + +G+    V I+ 
Sbjct: 98  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 157

Query: 515 VESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL-EGHAMPI 691
           V++GK   +L      + ++ ++ DG  + S + DG+  I+D A+G+ L TL +    P+
Sbjct: 158 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 217

Query: 692 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH 805
             + FSP+ + ++ A+ D  +K++D        T +GH
Sbjct: 218 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 255



 Score = 95.5 bits (236), Expect = 5e-20
 Identities = 61/222 (27%), Positives = 105/222 (47%), Gaps = 1/222 (0%)
 Frame = +2

Query: 278 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS 457
           L+++L GH   V SV  S      ASSS D  I++W   +GK  K+I    +    +A+S
Sbjct: 37  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 96

Query: 458 PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIF 637
            DS  L + +    + I+ V SGK   +L     ++    ++P    + SG+ D  + I+
Sbjct: 97  SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156

Query: 638 DIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWV 817
           D+ TGK L TL  H+ P+ ++ F+ D  L+V++S DG  +I+D        TL    +  
Sbjct: 157 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 216

Query: 818 LN-VAFCPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQDQ 940
           ++ V F P+  +                   C+ T+  H+++
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 258



 Score = 72.8 bits (177), Expect = 4e-13
 Identities = 52/199 (26%), Positives = 99/199 (49%), Gaps = 8/199 (4%)
 Frame = +2

Query: 191 NKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 370
           N    S  +V+GS D+ V++W  +  K     +L  H   V +V  +    +  SSS D 
Sbjct: 136 NFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193

Query: 371 HIRLWDLENGKQIKSI---DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK--KE 535
             R+WD  +G+ +K++   D  PV    + FSP+ +Y+   T    + ++    GK  K 
Sbjct: 194 LCRIWDTASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 251

Query: 536 YSLDTRGKFILSIAYS-PDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP 712
           Y+     K+ +   +S   GK++ SG+ D ++ I+++ T +++  L+GH   + S    P
Sbjct: 252 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 311

Query: 713 DSQLLVTAS--DDGYIKIY 763
              ++ +A+  +D  IK++
Sbjct: 312 TENIIASAALENDKTIKLW 330


>ref|NP_083081.2| katanin p80 WD40-containing subunit B1 [Mus musculus].
          Length = 658

 Score =  101 bits (252), Expect = 8e-22
 Identities = 61/230 (26%), Positives = 110/230 (47%)
 Frame = +2

Query: 152 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDIS 331
           AH   + S+  G   K +   + TG  D  V +W     K +   SL GH   V SV ++
Sbjct: 18  AHASNVSSLVLG---KASGRLLATGGDDCRVNLWSIN--KPNCIMSLTGHTSPVESVRLN 72

Query: 332 HTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIF 511
               +  + S    IR+WDLE  K ++++     +  +L F P  +++A+G+    + ++
Sbjct: 73  TPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLW 132

Query: 512 GVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI 691
            +      +      + +  + +SPDGK+LAS A D  + ++D+  GK++    GH  P+
Sbjct: 133 DIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPV 192

Query: 692 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
             + F P+  LL + S D  I+ +D++   +   + G    V +V F PD
Sbjct: 193 NVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPD 242



 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 53/211 (25%), Positives = 95/211 (45%)
 Frame = +2

Query: 209 ETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWD 388
           E +V GS    ++VW     K+    +L GH+  + S+D        AS S D +I+LWD
Sbjct: 76  ELIVAGSQSGSIRVWDLEAAKI--LRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWD 133

Query: 389 LENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFIL 568
           +     +            L FSPD ++LA+      V ++ + +GK           + 
Sbjct: 134 IRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVN 193

Query: 569 SIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDG 748
            + + P+   LASG+ D  I  +D+   +++  +EG   P+RS+ F+PD   L +   D 
Sbjct: 194 VVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDS 253

Query: 749 YIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
            +++Y  +       +  +   V ++A C D
Sbjct: 254 -LRVYGWEPERCFDVVLVNWGKVADLAICND 283



 Score = 77.0 bits (188), Expect = 2e-14
 Identities = 42/167 (25%), Positives = 80/167 (47%)
 Frame = +2

Query: 344 IAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES 523
           + A+   D  + LW +     I S+        ++  +   + +  G+  G + ++ +E+
Sbjct: 35  LLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEA 94

Query: 524 GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT 703
            K   +L      I S+ + P G+++ASG+ D  I ++DI     +    GH+  +R L 
Sbjct: 95  AKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLR 154

Query: 704 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD 844
           FSPD + L +A+DD  +K++D+    +     GH   V  V F P++
Sbjct: 155 FSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNE 201


>ref|NP_796316.2| transcription initiation factor TFIID subunit 5 [Mus musculus].
          Length = 801

 Score = 91.7 bits (226), Expect = 8e-19
 Identities = 59/229 (25%), Positives = 100/229 (43%), Gaps = 4/229 (1%)
 Frame = +2

Query: 167  IWSVA---WGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWS-LEGHQLGVVSVDISH 334
            +WSV      + K+ +  +++    DD+++  +  DEK   +   L GH   V     S 
Sbjct: 497  VWSVTPKKLRSVKQASDLSLIDKESDDVLE--RIMDEKTASELKILYGHSGPVYGASFSP 554

Query: 335  TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 514
                  SSS D  +RLW L+    +          W   FSP   Y  +G H     ++ 
Sbjct: 555  DRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWA 614

Query: 515  VESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIR 694
             +  +           +    + P+  Y+A+G+ D  + ++D+  G  +    GH  PI 
Sbjct: 615  TDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIH 674

Query: 695  SLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
            SLTFSP+ + L T + DG + ++D+ H  + G L GH   V ++ F  D
Sbjct: 675  SLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRD 723



 Score = 78.2 bits (191), Expect = 9e-15
 Identities = 52/199 (26%), Positives = 93/199 (46%)
 Frame = +2

Query: 182  WGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSS 361
            +G +   +   +++ S D  V++W    +        +GH   V     S       S  
Sbjct: 548  YGASFSPDRNYLLSSSEDGTVRLWSL--QTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGG 605

Query: 362  LDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS 541
             D   RLW  ++ + ++       D     F P+S Y+ATG+    V ++ V +G     
Sbjct: 606  HDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRI 665

Query: 542  LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ 721
                   I S+ +SP+G++LA+GA DG + ++DI  G ++  L+GH   + SL FS D +
Sbjct: 666  FTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGE 725

Query: 722  LLVTASDDGYIKIYDVQHA 778
            +L + S D  ++++D   A
Sbjct: 726  ILASGSMDNTVRLWDAVKA 744


>ref|NP_663406.2| notchless protein homolog 1 [Mus musculus].
          Length = 485

 Score = 90.5 bits (223), Expect = 2e-18
 Identities = 60/230 (26%), Positives = 107/230 (46%), Gaps = 1/230 (0%)
 Frame = +2

Query: 155 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISH 334
           H  ++  + WG         + + S D  +KVW+  D  L       GH +  +++   +
Sbjct: 245 HTQSVTCLRWG-----GDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDY 299

Query: 335 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 514
            L   A    +A +   DL+    +K +       + L      + L +G+    + ++ 
Sbjct: 300 ALRTGAFEPAEATVNAQDLQGS--LKELKERASSRYNLVRGQGPERLVSGSDDFTLFLWS 357

Query: 515 VESGKKEYSLDTRGKFILS-IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI 691
               KK  +  T  + +++ + +SPD + +AS + D  I ++D  TGK L +L GH   +
Sbjct: 358 PAEDKKPLARMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAV 417

Query: 692 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
             + +S DS+LLV+ S D  +K++DV+   LA  L GHA  V  V + PD
Sbjct: 418 YQIAWSADSRLLVSGSSDSTLKVWDVKAQKLATDLPGHADEVYAVDWSPD 467



 Score = 87.4 bits (215), Expect = 1e-17
 Identities = 59/191 (30%), Positives = 93/191 (48%), Gaps = 6/191 (3%)
 Frame = +2

Query: 287 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS 466
           SLEGH   V+SV  S T    AS S D  +R WDL       +         ++++SPD 
Sbjct: 109 SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCKGHRHWVLSISWSPDG 168

Query: 467 QYLATGTHVGKVNIFGVESGKKE-YSLDTRGKFILSIAY-----SPDGKYLASGAIDGII 628
           + LA+G   G+V ++   +G +   +L    K+I  +++     +P+ +Y+AS + DG +
Sbjct: 169 KKLASGCKNGQVLLWDPSTGLQVGRTLTGHSKWITGLSWEPLHMNPECRYVASSSKDGSV 228

Query: 629 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 808
            ++D   G+    L GH   +  L +  D  LL +AS D  IK++      L  TL GH 
Sbjct: 229 RVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRTLQGHG 287

Query: 809 SWVLNVAFCPD 841
            WV  +A   D
Sbjct: 288 HWVNTMALSTD 298



 Score = 69.3 bits (168), Expect = 4e-12
 Identities = 43/146 (29%), Positives = 75/146 (51%)
 Frame = +2

Query: 200 ENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 379
           +  E +V+GS D  + +W   ++K  L   + GHQ  +  V  S    I AS+S D  I+
Sbjct: 339 QGPERLVSGSDDFTLFLWSPAEDKKPLA-RMTGHQALINQVLFSPDSRIVASASFDKSIK 397

Query: 380 LWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGK 559
           LWD   GK + S+       + +A+S DS+ L +G+    + ++ V++ K    L     
Sbjct: 398 LWDGRTGKYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLATDLPGHAD 457

Query: 560 FILSIAYSPDGKYLASGAIDGIINIF 637
            + ++ +SPDG+ +ASG  D  + I+
Sbjct: 458 EVYAVDWSPDGQRVASGGKDKCLRIW 483



 Score = 59.3 bits (142), Expect = 4e-09
 Identities = 50/198 (25%), Positives = 88/198 (44%), Gaps = 6/198 (3%)
 Frame = +2

Query: 149 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDI 328
           + H +A+ SVA+    K     + +GS D  V+ W    E     ++ +GH+  V+S+  
Sbjct: 111 EGHSEAVISVAFSPTGKY----LASGSGDTTVRFWDLSTETP--HFTCKGHRHWVLSISW 164

Query: 329 SHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVD-----AW-TLAFSPDSQYLATGTH 490
           S      AS   +  + LWD   G Q+     G        +W  L  +P+ +Y+A+ + 
Sbjct: 165 SPDGKKLASGCKNGQVLLWDPSTGLQVGRTLTGHSKWITGLSWEPLHMNPECRYVASSSK 224

Query: 491 VGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL 670
            G V ++   +G+ E  L    + +  + +  DG  L S + D  I ++    G L  TL
Sbjct: 225 DGSVRVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRTL 283

Query: 671 EGHAMPIRSLTFSPDSQL 724
           +GH   + ++  S D  L
Sbjct: 284 QGHGHWVNTMALSTDYAL 301


>ref|NP_081389.1| WD repeat-containing protein 5B [Mus musculus].
          Length = 328

 Score = 89.0 bits (219), Expect = 5e-18
 Identities = 56/222 (25%), Positives = 104/222 (46%), Gaps = 1/222 (0%)
 Frame = +2

Query: 278 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS 457
           L+ +L GH   + SV  S      ASS+ DA I +W   +G   K++    ++   +A+S
Sbjct: 31  LRLTLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGNCKKTLYGHSLEISDVAWS 90

Query: 458 PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIF 637
            DS  L + +    + ++ + SGK   +L     F+    ++P    + SG+ D  + I+
Sbjct: 91  SDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDESVKIW 150

Query: 638 DIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWV 817
           ++ TGK L TL  H+ PI ++ F+ +  L+V+ S DG  +I+D        TL+   +  
Sbjct: 151 EVKTGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNPP 210

Query: 818 LN-VAFCPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQDQ 940
           ++ V F P+  +                   C+ T+  H+++
Sbjct: 211 VSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNE 252



 Score = 88.6 bits (218), Expect = 7e-18
 Identities = 61/232 (26%), Positives = 112/232 (48%), Gaps = 4/232 (1%)
 Frame = +2

Query: 155 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISH 334
           H   I  VAW ++    S  +V+ S D  +KVW  R  K     +L+GH   V   D + 
Sbjct: 80  HSLEISDVAWSSD----SSRLVSASDDKTLKVWDMRSGKC--LKTLKGHSDFVFCCDFNP 133

Query: 335 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 514
              +  S S D  +++W+++ GK +K++ A       + F+ +   + +G++ G   I+ 
Sbjct: 134 PSNLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWD 193

Query: 515 VESGKKEYSLDTRGKFILS-IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI 691
             SG+   +L   G   +S + +SP+GKY+ +  +D  + ++D + G+ L T  GH    
Sbjct: 194 AASGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEK 253

Query: 692 RSLTFS---PDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP 838
             L  S      + +V+ S+D  + I+++Q   +   L GH   V++ A  P
Sbjct: 254 YCLFASFSVTGRKWVVSGSEDNMVYIWNLQTKEIVQRLQGHTDVVISAACHP 305


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,946,794
Number of extensions: 1030634
Number of successful extensions: 5035
Number of sequences better than 1.0e-05: 137
Number of HSP's gapped: 4429
Number of HSP's successfully gapped: 319
Length of query: 319
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 218
Effective length of database: 12,583,923
Effective search space: 2743295214
Effective search space used: 2743295214
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008329
         (959 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_079510.1| WD repeat-containing protein 61 [Homo sapiens].      545   e-155
Alignment   gi|NP_055224.1| TAF5-like RNA polymerase II p300/CBP-associated...   104   1e-22
Alignment   gi|NP_849143.1| WD repeat-containing protein 69 [Homo sapiens].      102   5e-22
Alignment   gi|NP_438172.1| WD repeat-containing protein 5 [Homo sapiens].       102   7e-22
Alignment   gi|NP_060058.1| WD repeat-containing protein 5 [Homo sapiens].       102   7e-22
Alignment   gi|NP_005877.2| katanin p80 WD40-containing subunit B1 [Homo sa...   101   9e-22
Alignment   gi|NP_001038941.1| WD repeat-containing protein 38 [Homo sapien...   100   3e-21
Alignment   gi|NP_008882.2| transcription initiation factor TFIID subunit 5...    92   9e-19
Alignment   gi|NP_060566.2| notchless protein homolog 1 isoform a [Homo sap...    90   3e-18
Alignment   gi|NP_004688.2| U4/U6 small nuclear ribonucleoprotein Prp4 [Hom...    87   3e-17

>ref|NP_079510.1| WD repeat-containing protein 61 [Homo sapiens].
          Length = 305

 Score =  545 bits (1404), Expect = e-155
 Identities = 266/282 (94%), Positives = 267/282 (94%)
 Frame = +2

Query: 113 MTNQYSILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSL 292
           MTNQY ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDE+LDLQWSL
Sbjct: 1   MTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSL 60

Query: 293 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 472
           EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY
Sbjct: 61  EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 120

Query: 473 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 652
           LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG
Sbjct: 121 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 180

Query: 653 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 832
           KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF
Sbjct: 181 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 240

Query: 833 CPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQDQVWGVKY 958
           CPDDTHF              GTRTCVHTFFDHQDQVWGVKY
Sbjct: 241 CPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKY 282



 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 49/196 (25%), Positives = 96/196 (48%)
 Frame = +2

Query: 179 AWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASS 358
           AW      +S+ + TG+    V ++     K +  +SL+     ++S+  S      AS 
Sbjct: 109 AWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE--YSLDTRGKFILSIAYSPDGKYLASG 166

Query: 359 SLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY 538
           ++D  I ++D+  GK + +++   +   +L FSPDSQ L T +  G + I+ V+      
Sbjct: 167 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG 226

Query: 539 SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS 718
           +L     ++L++A+ PD  +  S + D  + ++D+ T   +HT   H   +  + ++ + 
Sbjct: 227 TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNG 286

Query: 719 QLLVTASDDGYIKIYD 766
             +V+  DD  I IYD
Sbjct: 287 SKIVSVGDDQEIHIYD 302


>ref|NP_055224.1| TAF5-like RNA polymerase II p300/CBP-associated factor-associated
           factor 65 kDa subunit 5L isoform a [Homo sapiens].
          Length = 589

 Score =  104 bits (260), Expect = 1e-22
 Identities = 65/191 (34%), Positives = 97/191 (50%), Gaps = 11/191 (5%)
 Frame = +2

Query: 293 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 472
           +GH   V  +DIS      AS S D   RLW  +    ++       D   + F P+S Y
Sbjct: 381 QGHAYPVWDLDISPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNY 440

Query: 473 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 652
           LATG+    V ++  + G            +LS+A+SP+GKYLAS   D  + ++D+A+G
Sbjct: 441 LATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASG 500

Query: 653 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH-----------ANLAGTLS 799
            L   L GH   I SLTFSPDS L+ +AS D  ++++D+++           + L G  +
Sbjct: 501 TLYKELRGHTDNITSLTFSPDSGLIASASMDNSVRVWDIRNTYCSAPADGSSSELVGVYT 560

Query: 800 GHASWVLNVAF 832
           G  S VL+V F
Sbjct: 561 GQMSNVLSVQF 571



 Score = 79.3 bits (194), Expect = 5e-15
 Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 3/166 (1%)
 Frame = +2

Query: 353 SSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 532
           S S D  IR WDL +              W L  SP S Y A+G+H     ++  +   +
Sbjct: 359 SCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPYSLYFASGSHDRTARLWSFD---R 415

Query: 533 EYSLDTRGKFILSI---AYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT 703
            Y L      +  +    + P+  YLA+G+ D  + ++    G  +    GH  P+ SL 
Sbjct: 416 TYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLA 475

Query: 704 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
           FSP+ + L +A +D  +K++D+    L   L GH   + ++ F PD
Sbjct: 476 FSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPD 521



 Score = 48.9 bits (115), Expect = 7e-06
 Identities = 30/107 (28%), Positives = 53/107 (49%)
 Frame = +2

Query: 203 NSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 382
           NS  + TGS D  V++W  +       ++  GH+  V+S+  S      AS+  D  ++L
Sbjct: 437 NSNYLATGSTDKTVRLWSAQQGNSVRLFT--GHRGPVLSLAFSPNGKYLASAGEDQRLKL 494

Query: 383 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES 523
           WDL +G   K +     +  +L FSPDS  +A+ +    V ++ + +
Sbjct: 495 WDLASGTLYKELRGHTDNITSLTFSPDSGLIASASMDNSVRVWDIRN 541


>ref|NP_849143.1| WD repeat-containing protein 69 [Homo sapiens].
          Length = 415

 Score =  102 bits (254), Expect = 5e-22
 Identities = 70/283 (24%), Positives = 133/283 (46%), Gaps = 2/283 (0%)
 Frame = +2

Query: 116 TNQYSILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRD-EKLDLQWSL 292
           +N    LFK  +AH   + +VA      ++    +TGS D   K+W     E+L+   +L
Sbjct: 78  SNHTFYLFKVLKAHILPLTNVALN----KSGSCFITGSYDRTCKLWDTASGEELN---TL 130

Query: 293 EGHQLGVVSVDISHTL-PIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQ 469
           EGH+  V ++  ++      A+ S D   +LW +E GK   +      +   L+F+P S 
Sbjct: 131 EGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQST 190

Query: 470 YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT 649
            +ATG+      ++ +++G++ Y+L      I+S++++  G  + +G+ D  + ++D  T
Sbjct: 191 LVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADT 250

Query: 650 GKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVA 829
           G+ ++ L GH   I S +F+ D  L++T S D   K++D  +     TL+GH   +L+  
Sbjct: 251 GRKVNILIGHCAEISSASFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDDEILDSC 310

Query: 830 FCPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQDQVWGVKY 958
           F                      TR C+     H+ ++  + +
Sbjct: 311 FDYTGKLIATASADGTARIFSAATRKCIAKLEGHEGEISKISF 353



 Score =  100 bits (248), Expect = 3e-21
 Identities = 59/270 (21%), Positives = 117/270 (43%)
 Frame = +2

Query: 149 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDI 328
           + H + ++++A+        + + TGS D   K+W     K     +  GH   +V +  
Sbjct: 131 EGHRNVVYAIAFNN---PYGDKIATGSFDKTCKLWSVETGKC--YHTFRGHTAEIVCLSF 185

Query: 329 SHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNI 508
           +    + A+ S+D   +LWD++NG+++ ++     +  +L+F+     + TG+    V +
Sbjct: 186 NPQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVV 245

Query: 509 FGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMP 688
           +  ++G+K   L      I S +++ D   + +G++D    ++D   GK + TL GH   
Sbjct: 246 WDADTGRKVNILIGHCAEISSASFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDDE 305

Query: 689 IRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFXXXXX 868
           I    F    +L+ TAS DG  +I+          L GH   +  ++F P   H      
Sbjct: 306 ILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEGHEGEISKISFNPQGNHLLTGSS 365

Query: 869 XXXXXXXXXGTRTCVHTFFDHQDQVWGVKY 958
                     T  C+     H D+++   +
Sbjct: 366 DKTARIWDAQTGQCLQVLEGHTDEIFSCAF 395



 Score = 82.0 bits (201), Expect = 7e-16
 Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 1/206 (0%)
 Frame = +2

Query: 149 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKW-RDEKLDLQWSLEGHQLGVVSVD 325
           + H   I S+++ T+     + ++TGS D  V VW      K+++   L GH   + S  
Sbjct: 216 RGHSAEIISLSFNTS----GDRIITGSFDHTVVVWDADTGRKVNI---LIGHCAEISSAS 268

Query: 326 ISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVN 505
            +    +  + S+D   +LWD  NGK + ++     +     F    + +AT +  G   
Sbjct: 269 FNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTAR 328

Query: 506 IFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAM 685
           IF   + K    L+     I  I+++P G +L +G+ D    I+D  TG+ L  LEGH  
Sbjct: 329 IFSAATRKCIAKLEGHEGEISKISFNPQGNHLLTGSSDKTARIWDAQTGQCLQVLEGHTD 388

Query: 686 PIRSLTFSPDSQLLVTASDDGYIKIY 763
            I S  F+    +++T S D   +I+
Sbjct: 389 EIFSCAFNYKGNIVITGSKDNTCRIW 414


>ref|NP_438172.1| WD repeat-containing protein 5 [Homo sapiens].
          Length = 334

 Score =  102 bits (253), Expect = 7e-22
 Identities = 60/218 (27%), Positives = 113/218 (51%), Gaps = 1/218 (0%)
 Frame = +2

Query: 155 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISH 334
           H  A+ SV +  N     E + + S D L+K+W   D K +   ++ GH+LG+  V  S 
Sbjct: 44  HTKAVSSVKFSPN----GEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSS 97

Query: 335 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 514
              +  S+S D  +++WD+ +GK +K++       +   F+P S  + +G+    V I+ 
Sbjct: 98  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 157

Query: 515 VESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL-EGHAMPI 691
           V++GK   +L      + ++ ++ DG  + S + DG+  I+D A+G+ L TL +    P+
Sbjct: 158 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 217

Query: 692 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH 805
             + FSP+ + ++ A+ D  +K++D        T +GH
Sbjct: 218 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 255



 Score = 95.5 bits (236), Expect = 6e-20
 Identities = 61/222 (27%), Positives = 105/222 (47%), Gaps = 1/222 (0%)
 Frame = +2

Query: 278 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS 457
           L+++L GH   V SV  S      ASSS D  I++W   +GK  K+I    +    +A+S
Sbjct: 37  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 96

Query: 458 PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIF 637
            DS  L + +    + I+ V SGK   +L     ++    ++P    + SG+ D  + I+
Sbjct: 97  SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156

Query: 638 DIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWV 817
           D+ TGK L TL  H+ P+ ++ F+ D  L+V++S DG  +I+D        TL    +  
Sbjct: 157 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 216

Query: 818 LN-VAFCPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQDQ 940
           ++ V F P+  +                   C+ T+  H+++
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 258



 Score = 72.8 bits (177), Expect = 4e-13
 Identities = 52/199 (26%), Positives = 99/199 (49%), Gaps = 8/199 (4%)
 Frame = +2

Query: 191 NKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 370
           N    S  +V+GS D+ V++W  +  K     +L  H   V +V  +    +  SSS D 
Sbjct: 136 NFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193

Query: 371 HIRLWDLENGKQIKSI---DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK--KE 535
             R+WD  +G+ +K++   D  PV    + FSP+ +Y+   T    + ++    GK  K 
Sbjct: 194 LCRIWDTASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 251

Query: 536 YSLDTRGKFILSIAYS-PDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP 712
           Y+     K+ +   +S   GK++ SG+ D ++ I+++ T +++  L+GH   + S    P
Sbjct: 252 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 311

Query: 713 DSQLLVTAS--DDGYIKIY 763
              ++ +A+  +D  IK++
Sbjct: 312 TENIIASAALENDKTIKLW 330


>ref|NP_060058.1| WD repeat-containing protein 5 [Homo sapiens].
          Length = 334

 Score =  102 bits (253), Expect = 7e-22
 Identities = 60/218 (27%), Positives = 113/218 (51%), Gaps = 1/218 (0%)
 Frame = +2

Query: 155 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISH 334
           H  A+ SV +  N     E + + S D L+K+W   D K +   ++ GH+LG+  V  S 
Sbjct: 44  HTKAVSSVKFSPN----GEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSS 97

Query: 335 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 514
              +  S+S D  +++WD+ +GK +K++       +   F+P S  + +G+    V I+ 
Sbjct: 98  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 157

Query: 515 VESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL-EGHAMPI 691
           V++GK   +L      + ++ ++ DG  + S + DG+  I+D A+G+ L TL +    P+
Sbjct: 158 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 217

Query: 692 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH 805
             + FSP+ + ++ A+ D  +K++D        T +GH
Sbjct: 218 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 255



 Score = 95.5 bits (236), Expect = 6e-20
 Identities = 61/222 (27%), Positives = 105/222 (47%), Gaps = 1/222 (0%)
 Frame = +2

Query: 278 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS 457
           L+++L GH   V SV  S      ASSS D  I++W   +GK  K+I    +    +A+S
Sbjct: 37  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 96

Query: 458 PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIF 637
            DS  L + +    + I+ V SGK   +L     ++    ++P    + SG+ D  + I+
Sbjct: 97  SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156

Query: 638 DIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWV 817
           D+ TGK L TL  H+ P+ ++ F+ D  L+V++S DG  +I+D        TL    +  
Sbjct: 157 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 216

Query: 818 LN-VAFCPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQDQ 940
           ++ V F P+  +                   C+ T+  H+++
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 258



 Score = 72.8 bits (177), Expect = 4e-13
 Identities = 52/199 (26%), Positives = 99/199 (49%), Gaps = 8/199 (4%)
 Frame = +2

Query: 191 NKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 370
           N    S  +V+GS D+ V++W  +  K     +L  H   V +V  +    +  SSS D 
Sbjct: 136 NFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193

Query: 371 HIRLWDLENGKQIKSI---DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK--KE 535
             R+WD  +G+ +K++   D  PV    + FSP+ +Y+   T    + ++    GK  K 
Sbjct: 194 LCRIWDTASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 251

Query: 536 YSLDTRGKFILSIAYS-PDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP 712
           Y+     K+ +   +S   GK++ SG+ D ++ I+++ T +++  L+GH   + S    P
Sbjct: 252 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 311

Query: 713 DSQLLVTAS--DDGYIKIY 763
              ++ +A+  +D  IK++
Sbjct: 312 TENIIASAALENDKTIKLW 330


>ref|NP_005877.2| katanin p80 WD40-containing subunit B1 [Homo sapiens].
          Length = 655

 Score =  101 bits (252), Expect = 9e-22
 Identities = 61/230 (26%), Positives = 110/230 (47%)
 Frame = +2

Query: 152 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDIS 331
           AH   + S+  G   K +   + TG  D  V +W     K +   SL GH   V SV ++
Sbjct: 18  AHASNVSSLVLG---KASGRLLATGGDDCRVNLWSIN--KPNCIMSLTGHTSPVESVRLN 72

Query: 332 HTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIF 511
               +  + S    IR+WDLE  K ++++     +  +L F P  +++A+G+    + ++
Sbjct: 73  TPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLW 132

Query: 512 GVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI 691
            +      +      + +  + +SPDGK+LAS A D  + ++D+  GK++    GH  P+
Sbjct: 133 DIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPV 192

Query: 692 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
             + F P+  LL + S D  I+ +D++   +   + G    V +V F PD
Sbjct: 193 NVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPD 242



 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 53/211 (25%), Positives = 95/211 (45%)
 Frame = +2

Query: 209 ETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWD 388
           E +V GS    ++VW     K+    +L GH+  + S+D        AS S D +I+LWD
Sbjct: 76  ELIVAGSQSGSIRVWDLEAAKI--LRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWD 133

Query: 389 LENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFIL 568
           +     +            L FSPD ++LA+      V ++ + +GK           + 
Sbjct: 134 IRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVN 193

Query: 569 SIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDG 748
            + + P+   LASG+ D  I  +D+   +++  +EG   P+RS+ F+PD   L +   D 
Sbjct: 194 VVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDS 253

Query: 749 YIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
            +++Y  +       +  +   V ++A C D
Sbjct: 254 -LRVYGWEPERCFDVVLVNWGKVADLAICND 283



 Score = 77.0 bits (188), Expect = 2e-14
 Identities = 42/167 (25%), Positives = 80/167 (47%)
 Frame = +2

Query: 344 IAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES 523
           + A+   D  + LW +     I S+        ++  +   + +  G+  G + ++ +E+
Sbjct: 35  LLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEA 94

Query: 524 GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT 703
            K   +L      I S+ + P G+++ASG+ D  I ++DI     +    GH+  +R L 
Sbjct: 95  AKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLR 154

Query: 704 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD 844
           FSPD + L +A+DD  +K++D+    +     GH   V  V F P++
Sbjct: 155 FSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNE 201


>ref|NP_001038941.1| WD repeat-containing protein 38 [Homo sapiens].
          Length = 314

 Score =  100 bits (248), Expect = 3e-21
 Identities = 73/217 (33%), Positives = 113/217 (52%), Gaps = 3/217 (1%)
 Frame = +2

Query: 203 NSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 382
           + + ++TGS D  V  W+ R  +L   W L GH   V     S    + AS+S D  +RL
Sbjct: 32  DGQMLLTGSEDGCVYGWETRSGQL--LWRLGGHTGPVKFCRFSPDGHLFASASCDCTVRL 89

Query: 383 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKF 562
           WD+   K ++ +        T++FSPDS+ LA+G    +V ++ V+SG+    L      
Sbjct: 90  WDVARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQSGQMLRLLVGHRDS 149

Query: 563 ILSIAYSPDGKYLASGAIDGIINIFDI--ATGKLLH-TLEGHAMPIRSLTFSPDSQLLVT 733
           I S  +SP    LA+G+ D  ++I+D+   T  + H  LEGH+  I  L +S  S LL +
Sbjct: 150 IQSSDFSPTVNCLATGSWDSTVHIWDLRMVTPAVSHQALEGHSANISCLCYSA-SGLLAS 208

Query: 734 ASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD 844
            S D  I I+    ++L   L GH +WV ++AF PD+
Sbjct: 209 GSWDKTIHIWKPTTSSLLIQLKGHVTWVKSIAFSPDE 245



 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 43/130 (33%), Positives = 67/130 (51%)
 Frame = +2

Query: 449 AFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGII 628
           AFSPD Q L TG+  G V  +   SG+  + L      +    +SPDG   AS + D  +
Sbjct: 28  AFSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRFSPDGHLFASASCDCTV 87

Query: 629 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 808
            ++D+A  K L  L+GH   + +++FSPDS+ L +   D  + ++DVQ   +   L GH 
Sbjct: 88  RLWDVARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQSGQMLRLLVGHR 147

Query: 809 SWVLNVAFCP 838
             + +  F P
Sbjct: 148 DSIQSSDFSP 157



 Score = 72.0 bits (175), Expect = 7e-13
 Identities = 41/117 (35%), Positives = 61/117 (52%)
 Frame = +2

Query: 491 VGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL 670
           V +V  FG   G+           + S A+SPDG+ L +G+ DG +  ++  +G+LL  L
Sbjct: 11  VRRVKFFGQHGGE-----------VNSSAFSPDGQMLLTGSEDGCVYGWETRSGQLLWRL 59

Query: 671 EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
            GH  P++   FSPD  L  +AS D  ++++DV  A     L GH   V  V+F PD
Sbjct: 60  GGHTGPVKFCRFSPDGHLFASASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPD 116



 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 49/184 (26%), Positives = 90/184 (48%), Gaps = 3/184 (1%)
 Frame = +2

Query: 203 NSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 382
           +S  + +G  D  V +W  +  ++     L GH+  + S D S T+   A+ S D+ + +
Sbjct: 116 DSRQLASGGWDKRVMLWDVQSGQM--LRLLVGHRDSIQSSDFSPTVNCLATGSWDSTVHI 173

Query: 383 WDLEN---GKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTR 553
           WDL         ++++    +   L +S  S  LA+G+    ++I+   +      L   
Sbjct: 174 WDLRMVTPAVSHQALEGHSANISCLCYSA-SGLLASGSWDKTIHIWKPTTSSLLIQLKGH 232

Query: 554 GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVT 733
             ++ SIA+SPD  +LAS     ++ ++D  TGK L TL+G      +  F+PD ++LV+
Sbjct: 233 VTWVKSIAFSPDELWLASAGYSRMVKVWDCNTGKCLETLKGVLDVAHTCAFTPDGKILVS 292

Query: 734 ASDD 745
            + D
Sbjct: 293 GAAD 296


>ref|NP_008882.2| transcription initiation factor TFIID subunit 5 [Homo sapiens].
          Length = 800

 Score = 91.7 bits (226), Expect = 9e-19
 Identities = 59/229 (25%), Positives = 100/229 (43%), Gaps = 4/229 (1%)
 Frame = +2

Query: 167  IWSVA---WGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWS-LEGHQLGVVSVDISH 334
            +WSV      + K+ +  +++    DD+++  +  DEK   +   L GH   V     S 
Sbjct: 496  VWSVTPKKLRSVKQASDLSLIDKESDDVLE--RIMDEKTASELKILYGHSGPVYGASFSP 553

Query: 335  TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 514
                  SSS D  +RLW L+    +          W   FSP   Y  +G H     ++ 
Sbjct: 554  DRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWA 613

Query: 515  VESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIR 694
             +  +           +    + P+  Y+A+G+ D  + ++D+  G  +    GH  PI 
Sbjct: 614  TDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIH 673

Query: 695  SLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
            SLTFSP+ + L T + DG + ++D+ H  + G L GH   V ++ F  D
Sbjct: 674  SLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRD 722



 Score = 77.8 bits (190), Expect = 1e-14
 Identities = 51/195 (26%), Positives = 92/195 (47%)
 Frame = +2

Query: 182  WGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSS 361
            +G +   +   +++ S D  V++W    +        +GH   V     S       S  
Sbjct: 547  YGASFSPDRNYLLSSSEDGTVRLWSL--QTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGG 604

Query: 362  LDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS 541
             D   RLW  ++ + ++       D     F P+S Y+ATG+    V ++ V +G     
Sbjct: 605  HDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRI 664

Query: 542  LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ 721
                   I S+ +SP+G++LA+GA DG + ++DI  G ++  L+GH   + SL FS D +
Sbjct: 665  FTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGE 724

Query: 722  LLVTASDDGYIKIYD 766
            +L + S D  ++++D
Sbjct: 725  ILASGSMDNTVRLWD 739


>ref|NP_060566.2| notchless protein homolog 1 isoform a [Homo sapiens].
          Length = 485

 Score = 89.7 bits (221), Expect = 3e-18
 Identities = 60/191 (31%), Positives = 94/191 (49%), Gaps = 6/191 (3%)
 Frame = +2

Query: 287 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS 466
           SLEGH   V+SV  S T    AS S D  +R WDL       +         ++++SPD 
Sbjct: 109 SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCKGHRHWVLSISWSPDG 168

Query: 467 QYLATGTHVGKVNIFGVESGKKE-YSLDTRGKFILSIAY-----SPDGKYLASGAIDGII 628
           + LA+G   G++ ++   +GK+   +L    K+I  +++     +P+ +Y+AS + DG +
Sbjct: 169 RKLASGCKNGQILLWDPSTGKQVGRTLAGHSKWITGLSWEPLHANPECRYVASSSKDGSV 228

Query: 629 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 808
            I+D   G+    L GH   +  L +  D  LL +AS D  IK++      L  TL GH 
Sbjct: 229 RIWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRTLQGHG 287

Query: 809 SWVLNVAFCPD 841
            WV  +A   D
Sbjct: 288 HWVNTMALSTD 298



 Score = 89.4 bits (220), Expect = 5e-18
 Identities = 60/230 (26%), Positives = 107/230 (46%), Gaps = 1/230 (0%)
 Frame = +2

Query: 155 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISH 334
           H  ++  + WG         + + S D  +KVW+  D  L       GH +  +++   +
Sbjct: 245 HTQSVTCLRWG-----GDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDY 299

Query: 335 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 514
            L   A    +A +   DL+   Q   +    +  + L      + L +G+    + ++ 
Sbjct: 300 ALRTGAFEPAEASVNPQDLQGSLQ--ELKERALSRYNLVRGQGPERLVSGSDDFTLFLWS 357

Query: 515 VESGKKEYSLDTRGKFILS-IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI 691
               KK  +  T  + +++ + +SPD + +AS + D  I ++D  TGK L +L GH   +
Sbjct: 358 PAEDKKPLTRMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAV 417

Query: 692 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
             + +S DS+LLV+ S D  +K++DV+   LA  L GHA  V  V + PD
Sbjct: 418 YQIAWSADSRLLVSGSSDSTLKVWDVKAQKLAMDLPGHADEVYAVDWSPD 467



 Score = 69.7 bits (169), Expect = 4e-12
 Identities = 43/146 (29%), Positives = 75/146 (51%)
 Frame = +2

Query: 200 ENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 379
           +  E +V+GS D  + +W   ++K  L   + GHQ  +  V  S    I AS+S D  I+
Sbjct: 339 QGPERLVSGSDDFTLFLWSPAEDKKPLT-RMTGHQALINQVLFSPDSRIVASASFDKSIK 397

Query: 380 LWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGK 559
           LWD   GK + S+       + +A+S DS+ L +G+    + ++ V++ K    L     
Sbjct: 398 LWDGRTGKYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLAMDLPGHAD 457

Query: 560 FILSIAYSPDGKYLASGAIDGIINIF 637
            + ++ +SPDG+ +ASG  D  + I+
Sbjct: 458 EVYAVDWSPDGQRVASGGKDKCLRIW 483



 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 54/199 (27%), Positives = 88/199 (44%), Gaps = 7/199 (3%)
 Frame = +2

Query: 149 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDI 328
           + H +A+ SVA+    K     + +GS D  V+ W    E     ++ +GH+  V+S+  
Sbjct: 111 EGHSEAVISVAFSPTGKY----LASGSGDTTVRFWDLSTETP--HFTCKGHRHWVLSISW 164

Query: 329 SHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS-------PDSQYLATGT 487
           S      AS   +  I LWD   GKQ+    AG    W    S       P+ +Y+A+ +
Sbjct: 165 SPDGRKLASGCKNGQILLWDPSTGKQVGRTLAGH-SKWITGLSWEPLHANPECRYVASSS 223

Query: 488 HVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHT 667
             G V I+   +G+ E  L    + +  + +  DG  L S + D  I ++    G L  T
Sbjct: 224 KDGSVRIWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRT 282

Query: 668 LEGHAMPIRSLTFSPDSQL 724
           L+GH   + ++  S D  L
Sbjct: 283 LQGHGHWVNTMALSTDYAL 301


>ref|NP_004688.2| U4/U6 small nuclear ribonucleoprotein Prp4 [Homo sapiens].
          Length = 522

 Score = 86.7 bits (213), Expect = 3e-17
 Identities = 53/225 (23%), Positives = 101/225 (44%), Gaps = 8/225 (3%)
 Frame = +2

Query: 203 NSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIA--------ASS 358
           NS+ + T     L K+W   D   +L  +L GH   V ++       ++        AS 
Sbjct: 242 NSKMLATACWSGLCKLWSVPD--CNLLHTLRGHNTNVGAIVFHPKSTVSLDPKDVNLASC 299

Query: 359 SLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY 538
           + D  ++LW L++ + +  I+   V    + + P  ++L T  +     ++ +E+ ++  
Sbjct: 300 AADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEIL 359

Query: 539 SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS 718
             +     +  IA+  DG    +G +D    ++D+ TG+ +  LEGH   I  + FSP+ 
Sbjct: 360 HQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNG 419

Query: 719 QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHF 853
             + T S D   K++D++      T+  H + V  V F P   +F
Sbjct: 420 YHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNF 464



 Score = 66.6 bits (161), Expect = 3e-11
 Identities = 41/173 (23%), Positives = 77/173 (44%), Gaps = 1/173 (0%)
 Frame = +2

Query: 443 TLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDG 622
           T++  P    LA+    G V ++ ++S +    ++     +  + + P G++L +   D 
Sbjct: 286 TVSLDPKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDR 345

Query: 623 IINIFDI-ATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS 799
              ++D+ A  ++LH  EGH+M +  + F  D  L  T   D + +++D++       L 
Sbjct: 346 SWRLWDLEAQEEILHQ-EGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLE 404

Query: 800 GHASWVLNVAFCPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQDQVWGVKY 958
           GH   +  + F P+  H                 R CV+T   HQ+ V GVK+
Sbjct: 405 GHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKF 457


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,191,142
Number of extensions: 1223996
Number of successful extensions: 6343
Number of sequences better than 1.0e-05: 163
Number of HSP's gapped: 5587
Number of HSP's successfully gapped: 398
Length of query: 319
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 216
Effective length of database: 14,901,872
Effective search space: 3218804352
Effective search space used: 3218804352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008329
         (959 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr07                                                         345   3e-92

>Sscrofa_Chr07 
||          Length = 134764511

 Score =  345 bits (174), Expect = 3e-92
 Identities = 174/174 (100%)
 Strand = Plus / Plus

                                                                            
Query: 258      ggcgtgatgagaagctggatctacagtggagcctggagggccatcagctgggtgtggtgt 317
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53201213 ggcgtgatgagaagctggatctacagtggagcctggagggccatcagctgggtgtggtgt 53201272

                                                                            
Query: 318      ctgtggacataagccacaccctgcccattgctgcatccagttctcttgatgctcatattc 377
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53201273 ctgtggacataagccacaccctgcccattgctgcatccagttctcttgatgctcatattc 53201332

                                                                      
Query: 378      gtctctgggacttggaaaacggcaaacagataaagtctatagatgcaggacctg 431
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53201333 gtctctgggacttggaaaacggcaaacagataaagtctatagatgcaggacctg 53201386



 Score =  297 bits (150), Expect = 6e-78
 Identities = 150/150 (100%)
 Strand = Plus / Plus

                                                                            
Query: 431      gtggatgcctggactttggccttttctcctgattcccagtatctggccacaggaactcat 490
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53206136 gtggatgcctggactttggccttttctcctgattcccagtatctggccacaggaactcat 53206195

                                                                            
Query: 491      gtggggaaagtgaacatttttggtgttgaaagtgggaaaaaggaatattctttggacaca 550
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53206196 gtggggaaagtgaacatttttggtgttgaaagtgggaaaaaggaatattctttggacaca 53206255

                                              
Query: 551      agaggaaaattcattcttagtattgcatat 580
                ||||||||||||||||||||||||||||||
Sbjct: 53206256 agaggaaaattcattcttagtattgcatat 53206285



 Score =  216 bits (109), Expect = 2e-53
 Identities = 109/109 (100%)
 Strand = Plus / Plus

                                                                            
Query: 151      agcccatgatgatgccatttggtcagttgcctgggggacaaacaagaaagaaaactcaga 210
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53200735 agcccatgatgatgccatttggtcagttgcctgggggacaaacaagaaagaaaactcaga 53200794

                                                                 
Query: 211      gacagtggtcacaggatccctggatgacctggtgaaggtctggaaatgg 259
                |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53200795 gacagtggtcacaggatccctggatgacctggtgaaggtctggaaatgg 53200843



 Score =  190 bits (96), Expect = 1e-45
 Identities = 96/96 (100%)
 Strand = Plus / Plus

                                                                            
Query: 673      aggccatgctatgcccattcgctccttgactttttccccggattcgcagctccttgtcac 732
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53207441 aggccatgctatgcccattcgctccttgactttttccccggattcgcagctccttgtcac 53207500

                                                    
Query: 733      tgcttcagatgatggctacatcaagatctatgacgt 768
                ||||||||||||||||||||||||||||||||||||
Sbjct: 53207501 tgcttcagatgatggctacatcaagatctatgacgt 53207536



 Score =  188 bits (95), Expect = 4e-45
 Identities = 95/95 (100%)
 Strand = Plus / Plus

                                                                            
Query: 581      agtcctgatgggaagtatctggccagtggcgctatagacggaatcatcaatatttttgat 640
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53206508 agtcctgatgggaagtatctggccagtggcgctatagacggaatcatcaatatttttgat 53206567

                                                   
Query: 641      attgcaactggaaaacttcttcatacgctggaagg 675
                |||||||||||||||||||||||||||||||||||
Sbjct: 53206568 attgcaactggaaaacttcttcatacgctggaagg 53206602



 Score =  184 bits (93), Expect = 6e-44
 Identities = 93/93 (100%)
 Strand = Plus / Plus

                                                                            
Query: 769      acaacatgccaacttggctggcacactgagtggccatgcatcctgggtgttgaatgttgc 828
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53209548 acaacatgccaacttggctggcacactgagtggccatgcatcctgggtgttgaatgttgc 53209607

                                                 
Query: 829      attttgtccagatgacacacactttgtttccag 861
                |||||||||||||||||||||||||||||||||
Sbjct: 53209608 attttgtccagatgacacacactttgtttccag 53209640



 Score =  165 bits (83), Expect = 6e-38
 Identities = 83/83 (100%)
 Strand = Plus / Plus

                                                                            
Query: 860      agttcatctgacaaaagtgtaaaagtttgggatgttggaacgaggacatgtgttcacacc 919
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53210473 agttcatctgacaaaagtgtaaaagtttgggatgttggaacgaggacatgtgttcacacc 53210532

                                       
Query: 920      ttctttgatcaccaggatcaggt 942
                |||||||||||||||||||||||
Sbjct: 53210533 ttctttgatcaccaggatcaggt 53210555



 Score =  141 bits (71), Expect = 8e-31
 Identities = 71/71 (100%)
 Strand = Plus / Plus

                                                                            
Query: 3        attgccgcgcgccgaggtcgcgcggagccggtcctcggaagagctgaggggctgtgcagc 62
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53195103 attgccgcgcgccgaggtcgcgcggagccggtcctcggaagagctgaggggctgtgcagc 53195162

                           
Query: 63       cgggcagtgag 73
                |||||||||||
Sbjct: 53195163 cgggcagtgag 53195173



 Score = 81.8 bits (41), Expect = 6e-13
 Identities = 51/53 (96%), Gaps = 1/53 (1%)
 Strand = Plus / Plus

                                                                     
Query: 72       agagctgtctggccttaagcccttcatccttggggaaggaaatgactaaccag 124
                |||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 53198282 agagctgtctggccttaagcccttcatccttgggaaagg-aatgactaaccag 53198333



 Score = 61.9 bits (31), Expect = 6e-07
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                               
Query: 122      cagtacagtattctcttcaaacaagagcaag 152
                |||||||||||||||||||||||||||||||
Sbjct: 53199038 cagtacagtattctcttcaaacaagagcaag 53199068


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,702,585
Number of extensions: 191
Number of successful extensions: 191
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 10
Length of query: 959
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 938
Effective length of database: 2,808,413,156
Effective search space: 2634291540328
Effective search space used: 2634291540328
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)