Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008399
(1482 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777062.2| beta-catenin-like protein 1 [Bos taurus]. 815 0.0
>ref|NP_777062.2| beta-catenin-like protein 1 [Bos taurus].
Length = 563
Score = 815 bits (2106), Expect = 0.0
Identities = 423/463 (91%), Positives = 426/463 (92%)
Frame = +1
Query: 94 MDVGELLSYQPNRGTKRPRDDEEEELKMXXXXXXXXXXXXXXXXXXXXXXXXXXXKKRLL 273
MDVGELLSYQPNRGTKRPRDDEEEELKM KKRLL
Sbjct: 1 MDVGELLSYQPNRGTKRPRDDEEEELKMRRRQAGTRERGRYREEEMTVVEEADDDKKRLL 60
Query: 274 QIIDRDGXXXXXXXXPLDESSVKKMILTFEKRSYKNQELRIKFPDNPEKFMESELDLNDI 453
QIIDR+G PLDESSVKKMILTFEKRSYKNQELRIKFPDNPEKFMESELDLNDI
Sbjct: 61 QIIDREGEEEEEEEEPLDESSVKKMILTFEKRSYKNQELRIKFPDNPEKFMESELDLNDI 120
Query: 454 IQEMHVVATMPDLYHLLVELNAVQSLLGLLGHDNTDVSIAVVDLLQELTDIDTLHESEEG 633
IQEMHVVATMPDLYHLLVELNAVQSLLGLLGHDNTDVSIAVVDLLQELTDIDTLHESEEG
Sbjct: 121 IQEMHVVATMPDLYHLLVELNAVQSLLGLLGHDNTDVSIAVVDLLQELTDIDTLHESEEG 180
Query: 634 AEVLIDALVDGQVVALLVQNLERLDESVKEEADGVHNTLAIVENMAEFRPEMCTEAAQQG 813
AEVL DALVDGQVVALLVQ+LERLDESVKEEADGVHNTLAIVENMAEFRPEMCTEAAQQG
Sbjct: 181 AEVLTDALVDGQVVALLVQDLERLDESVKEEADGVHNTLAIVENMAEFRPEMCTEAAQQG 240
Query: 814 LLQWLLKRLKAKMPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLLQQLSVFKRHN 993
LLQWLLKRLKAKMPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLLQQLSVFKRHN
Sbjct: 241 LLQWLLKRLKAKMPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLLQQLSVFKRHN 300
Query: 994 PSTAEEQEMMENLFDSLCSCLMLSSNRERFLKGEGLQLMNLMLREKKISRSSALKVLDHA 1173
PSTAEEQEMMENLFDSLCSCLMLSSNRERFLKGEGLQLMNLMLREKKISRSSALKVLDHA
Sbjct: 301 PSTAEEQEMMENLFDSLCSCLMLSSNRERFLKGEGLQLMNLMLREKKISRSSALKVLDHA 360
Query: 1174 MIGPEGTDNCHKFVDILGLRTIFPLFMKSPRKIKKVGTTEKEHEEHVCSILASLLRNLRG 1353
MIGPEGTDNCHKFVDILGLRTIFPLFMKSPRKIKKVGTTEKEHEEHVCSILASLLRNLRG
Sbjct: 361 MIGPEGTDNCHKFVDILGLRTIFPLFMKSPRKIKKVGTTEKEHEEHVCSILASLLRNLRG 420
Query: 1354 QQRTRLLNKFTENDSEKVDRLMELHFKYLDAMQVAHKKIEGEK 1482
QQRTRLLNKFTENDSEKVDRLMELHFKYLDA+QVA KKIEGEK
Sbjct: 421 QQRTRLLNKFTENDSEKVDRLMELHFKYLDAVQVADKKIEGEK 463
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,398,688
Number of extensions: 1519314
Number of successful extensions: 5124
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5116
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 388
Effective length of database: 14,174,046
Effective search space: 5499529848
Effective search space used: 5499529848
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008399
(1482 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534415.2| PREDICTED: similar to beta catenin-like 1 isofo... 821 0.0
Alignment gi|XP_865914.1| PREDICTED: similar to beta catenin-like 1 isofo... 416 e-116
>ref|XP_534415.2| PREDICTED: similar to beta catenin-like 1 isoform 1 [Canis
familiaris].
Length = 563
Score = 821 bits (2120), Expect = 0.0
Identities = 426/463 (92%), Positives = 427/463 (92%)
Frame = +1
Query: 94 MDVGELLSYQPNRGTKRPRDDEEEELKMXXXXXXXXXXXXXXXXXXXXXXXXXXXKKRLL 273
MDVGELLSYQPNRGTKRPRDDEEEELKM KKRLL
Sbjct: 1 MDVGELLSYQPNRGTKRPRDDEEEELKMRRRQAGPRDRGRYREEEMTVVEEADDDKKRLL 60
Query: 274 QIIDRDGXXXXXXXXPLDESSVKKMILTFEKRSYKNQELRIKFPDNPEKFMESELDLNDI 453
QIIDR+G PLDESSVKKMILTFEKRSYKNQELRIKFPDNPEKFMESELDLNDI
Sbjct: 61 QIIDREGEEEEEEEEPLDESSVKKMILTFEKRSYKNQELRIKFPDNPEKFMESELDLNDI 120
Query: 454 IQEMHVVATMPDLYHLLVELNAVQSLLGLLGHDNTDVSIAVVDLLQELTDIDTLHESEEG 633
IQEMHVVATMPDLYHLLVELNAVQSLLGLLGHDNTDVSIAVVDLLQELTDIDTLHESEEG
Sbjct: 121 IQEMHVVATMPDLYHLLVELNAVQSLLGLLGHDNTDVSIAVVDLLQELTDIDTLHESEEG 180
Query: 634 AEVLIDALVDGQVVALLVQNLERLDESVKEEADGVHNTLAIVENMAEFRPEMCTEAAQQG 813
AEVLIDALVDGQVVALLVQNLERLDESVKEEADGVHNTLAIVENMAEFRPEMCTEAAQQG
Sbjct: 181 AEVLIDALVDGQVVALLVQNLERLDESVKEEADGVHNTLAIVENMAEFRPEMCTEAAQQG 240
Query: 814 LLQWLLKRLKAKMPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLLQQLSVFKRHN 993
LLQWLLKRLKAKMPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLLQQLSVFKRHN
Sbjct: 241 LLQWLLKRLKAKMPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLLQQLSVFKRHN 300
Query: 994 PSTAEEQEMMENLFDSLCSCLMLSSNRERFLKGEGLQLMNLMLREKKISRSSALKVLDHA 1173
PSTAEEQEMMENLFDSLCSCLMLSSNRERFLKGEGLQLMNLMLREKKISRSSALKVLDHA
Sbjct: 301 PSTAEEQEMMENLFDSLCSCLMLSSNRERFLKGEGLQLMNLMLREKKISRSSALKVLDHA 360
Query: 1174 MIGPEGTDNCHKFVDILGLRTIFPLFMKSPRKIKKVGTTEKEHEEHVCSILASLLRNLRG 1353
MIGPEGTDNCHKFVDILGLRTIFPLFMKSPRKIKKVGTTEKEHEEHVCSILASLLRNLRG
Sbjct: 361 MIGPEGTDNCHKFVDILGLRTIFPLFMKSPRKIKKVGTTEKEHEEHVCSILASLLRNLRG 420
Query: 1354 QQRTRLLNKFTENDSEKVDRLMELHFKYLDAMQVAHKKIEGEK 1482
QQRTRLLNKFTENDSEKVDRLMELHFKYLDAMQVA KKIEGEK
Sbjct: 421 QQRTRLLNKFTENDSEKVDRLMELHFKYLDAMQVADKKIEGEK 463
>ref|XP_865914.1| PREDICTED: similar to beta catenin-like 1 isoform 2 [Canis
familiaris].
Length = 311
Score = 416 bits (1070), Expect = e-116
Identities = 210/211 (99%), Positives = 210/211 (99%)
Frame = +1
Query: 850 MPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLLQQLSVFKRHNPSTAEEQEMMEN 1029
MPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLLQQLSVFKRHNPSTAEEQEMMEN
Sbjct: 1 MPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLLQQLSVFKRHNPSTAEEQEMMEN 60
Query: 1030 LFDSLCSCLMLSSNRERFLKGEGLQLMNLMLREKKISRSSALKVLDHAMIGPEGTDNCHK 1209
LFDSLCSCLMLSSNRERFLKGEGLQLMNLMLREKKISRSSALKVLDHAMIGPEGTDNCHK
Sbjct: 61 LFDSLCSCLMLSSNRERFLKGEGLQLMNLMLREKKISRSSALKVLDHAMIGPEGTDNCHK 120
Query: 1210 FVDILGLRTIFPLFMKSPRKIKKVGTTEKEHEEHVCSILASLLRNLRGQQRTRLLNKFTE 1389
FVDILGLRTIFPLFMKSPRKIKKVGTTEKEHEEHVCSILASLLRNLRGQQRTRLLNKFTE
Sbjct: 121 FVDILGLRTIFPLFMKSPRKIKKVGTTEKEHEEHVCSILASLLRNLRGQQRTRLLNKFTE 180
Query: 1390 NDSEKVDRLMELHFKYLDAMQVAHKKIEGEK 1482
NDSEKVDRLMELHFKYLDAMQVA KKIEGEK
Sbjct: 181 NDSEKVDRLMELHFKYLDAMQVADKKIEGEK 211
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 57,659,337
Number of extensions: 1546871
Number of successful extensions: 5036
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5030
Number of HSP's successfully gapped: 2
Length of query: 494
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 387
Effective length of database: 15,307,552
Effective search space: 5924022624
Effective search space used: 5924022624
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008399
(1482 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360036.1| PREDICTED: hypothetical protein LOC100621663... 430 e-120
Alignment gi|XP_003134482.2| PREDICTED: beta-catenin-like protein 1-like ... 308 5e-84
Alignment gi|XP_003360035.1| PREDICTED: hypothetical protein LOC100515108... 215 4e-56
Alignment gi|XP_001925523.1| PREDICTED: beta-catenin-like protein 1-like ... 116 3e-26
>ref|XP_003360036.1| PREDICTED: hypothetical protein LOC100621663 [Sus scrofa].
Length = 565
Score = 430 bits (1105), Expect = e-120
Identities = 219/234 (93%), Positives = 221/234 (94%)
Frame = +1
Query: 604 IDTLHESEEGAEVLIDALVDGQVVALLVQNLERLDESVKEEADGVHNTLAIVENMAEFRP 783
+ T G+ V VDGQVVALLVQNLERLDESVKEEADGVHNTLAIVENMAEFRP
Sbjct: 269 LHTFELKGRGSSVRTQVWVDGQVVALLVQNLERLDESVKEEADGVHNTLAIVENMAEFRP 328
Query: 784 EMCTEAAQQGLLQWLLKRLKAKMPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLL 963
EMCTEAAQQGLLQWLLKRLKAKMPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLL
Sbjct: 329 EMCTEAAQQGLLQWLLKRLKAKMPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLL 388
Query: 964 QQLSVFKRHNPSTAEEQEMMENLFDSLCSCLMLSSNRERFLKGEGLQLMNLMLREKKISR 1143
QQLSVFKRHNPSTAEEQEMMENLFDSLCSCLMLSSNRERFLKGEGLQLMNLMLREKKISR
Sbjct: 389 QQLSVFKRHNPSTAEEQEMMENLFDSLCSCLMLSSNRERFLKGEGLQLMNLMLREKKISR 448
Query: 1144 SSALKVLDHAMIGPEGTDNCHKFVDILGLRTIFPLFMKSPRKIKKVGTTEKEHE 1305
SSALKVLDHAMIGPEGTDNCHKFVDILGLRTIFPLFMKSPRKIKKVGTTEKEHE
Sbjct: 449 SSALKVLDHAMIGPEGTDNCHKFVDILGLRTIFPLFMKSPRKIKKVGTTEKEHE 502
>ref|XP_003134482.2| PREDICTED: beta-catenin-like protein 1-like [Sus scrofa].
Length = 256
Score = 308 bits (789), Expect = 5e-84
Identities = 156/157 (99%), Positives = 157/157 (100%)
Frame = +1
Query: 655 LVDGQVVALLVQNLERLDESVKEEADGVHNTLAIVENMAEFRPEMCTEAAQQGLLQWLLK 834
+VDGQVVALLVQNLERLDESVKEEADGVHNTLAIVENMAEFRPEMCTEAAQQGLLQWLLK
Sbjct: 24 IVDGQVVALLVQNLERLDESVKEEADGVHNTLAIVENMAEFRPEMCTEAAQQGLLQWLLK 83
Query: 835 RLKAKMPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLLQQLSVFKRHNPSTAEEQ 1014
RLKAKMPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLLQQLSVFKRHNPSTAEEQ
Sbjct: 84 RLKAKMPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLLQQLSVFKRHNPSTAEEQ 143
Query: 1015 EMMENLFDSLCSCLMLSSNRERFLKGEGLQLMNLMLR 1125
EMMENLFDSLCSCLMLSSNRERFLKGEGLQLMNLMLR
Sbjct: 144 EMMENLFDSLCSCLMLSSNRERFLKGEGLQLMNLMLR 180
>ref|XP_003360035.1| PREDICTED: hypothetical protein LOC100515108 [Sus scrofa].
Length = 366
Score = 215 bits (548), Expect = 4e-56
Identities = 121/179 (67%), Positives = 124/179 (69%), Gaps = 46/179 (25%)
Frame = +1
Query: 259 KKRLLQIIDRDGXXXXXXXXPLDESSVKKMILTFEKRSYKNQELRIKFPDNPEKFMESEL 438
KKRLLQIIDRDG PLDESSVKKMILTFEKRSYKNQELRIKFPDNPEKFMESEL
Sbjct: 29 KKRLLQIIDRDGEEEEEEEEPLDESSVKKMILTFEKRSYKNQELRIKFPDNPEKFMESEL 88
Query: 439 DLNDIIQEMHVVATMPDLYHLLVELNAVQSLLGLLGHDNTDV------------------ 564
DLNDIIQEMHVVATMPDLYHLLVELNAVQSLLGLLGHDNTD+
Sbjct: 89 DLNDIIQEMHVVATMPDLYHLLVELNAVQSLLGLLGHDNTDILSALSSAGAQPSAGCGVE 148
Query: 565 ----------------------------SIAVVDLLQELTDIDTLHESEEGAEVLIDAL 657
++VVDLLQELTDIDTLHESEEGAEVLIDAL
Sbjct: 149 FWSVKSTSGDSVVHTSHLISEIITIFEGELSVVDLLQELTDIDTLHESEEGAEVLIDAL 207
>ref|XP_001925523.1| PREDICTED: beta-catenin-like protein 1-like [Sus scrofa].
Length = 174
Score = 116 bits (291), Expect = 3e-26
Identities = 58/59 (98%), Positives = 58/59 (98%)
Frame = +1
Query: 1306 EHVCSILASLLRNLRGQQRTRLLNKFTENDSEKVDRLMELHFKYLDAMQVAHKKIEGEK 1482
EHVCSILASLLRNLRGQQRTRLLNKFTENDSEKVDRLMELHFKYLDAMQVA KKIEGEK
Sbjct: 16 EHVCSILASLLRNLRGQQRTRLLNKFTENDSEKVDRLMELHFKYLDAMQVADKKIEGEK 74
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,798,949
Number of extensions: 998320
Number of successful extensions: 3379
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3377
Number of HSP's successfully gapped: 5
Length of query: 494
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 391
Effective length of database: 8,779,541
Effective search space: 3432800531
Effective search space used: 3432800531
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008399
(1482 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079956.3| beta-catenin-like protein 1 [Mus musculus]. 811 0.0
>ref|NP_079956.3| beta-catenin-like protein 1 [Mus musculus].
Length = 563
Score = 811 bits (2096), Expect = 0.0
Identities = 420/463 (90%), Positives = 424/463 (91%)
Frame = +1
Query: 94 MDVGELLSYQPNRGTKRPRDDEEEELKMXXXXXXXXXXXXXXXXXXXXXXXXXXXKKRLL 273
MDVGELLSYQPNRGTKRPRDDEEEELK KKRLL
Sbjct: 1 MDVGELLSYQPNRGTKRPRDDEEEELKTRRKQTGPRERGRYREEEATAAEDTADDKKRLL 60
Query: 274 QIIDRDGXXXXXXXXPLDESSVKKMILTFEKRSYKNQELRIKFPDNPEKFMESELDLNDI 453
QIIDRDG PLDESSVKKMILTFEKRSYKNQELRIKFPDNPEKFMESELDLNDI
Sbjct: 61 QIIDRDGEEEEEEEEPLDESSVKKMILTFEKRSYKNQELRIKFPDNPEKFMESELDLNDI 120
Query: 454 IQEMHVVATMPDLYHLLVELNAVQSLLGLLGHDNTDVSIAVVDLLQELTDIDTLHESEEG 633
IQEMHVVATMPDLYHLLVEL+AVQSLLGLLGHDNTDVSIAVVDLLQELTDIDTLHESEEG
Sbjct: 121 IQEMHVVATMPDLYHLLVELSAVQSLLGLLGHDNTDVSIAVVDLLQELTDIDTLHESEEG 180
Query: 634 AEVLIDALVDGQVVALLVQNLERLDESVKEEADGVHNTLAIVENMAEFRPEMCTEAAQQG 813
AEVLIDALVDGQV ALLVQNLERLDESV+EEADGVHNTLAIVENMAEFRPEMCTEAAQQG
Sbjct: 181 AEVLIDALVDGQVAALLVQNLERLDESVREEADGVHNTLAIVENMAEFRPEMCTEAAQQG 240
Query: 814 LLQWLLKRLKAKMPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLLQQLSVFKRHN 993
LLQWLLKRLKAKMPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLLQQLSVFKRHN
Sbjct: 241 LLQWLLKRLKAKMPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLLQQLSVFKRHN 300
Query: 994 PSTAEEQEMMENLFDSLCSCLMLSSNRERFLKGEGLQLMNLMLREKKISRSSALKVLDHA 1173
PSTAEEQEMMENLFD+LCSCLMLSSNRERFLKGEGLQLMNLMLREKK+SRSSALKVLDHA
Sbjct: 301 PSTAEEQEMMENLFDALCSCLMLSSNRERFLKGEGLQLMNLMLREKKVSRSSALKVLDHA 360
Query: 1174 MIGPEGTDNCHKFVDILGLRTIFPLFMKSPRKIKKVGTTEKEHEEHVCSILASLLRNLRG 1353
MIGPEGTDNCHKFVDILGLRTIFPLFMKSPRKIKKVGTTEKEHEEHVCSILASLLRNLRG
Sbjct: 361 MIGPEGTDNCHKFVDILGLRTIFPLFMKSPRKIKKVGTTEKEHEEHVCSILASLLRNLRG 420
Query: 1354 QQRTRLLNKFTENDSEKVDRLMELHFKYLDAMQVAHKKIEGEK 1482
QQRTRLLNKFTENDSEKVDRLMELHFKYL AMQVA KKIEGEK
Sbjct: 421 QQRTRLLNKFTENDSEKVDRLMELHFKYLSAMQVADKKIEGEK 463
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,234,438
Number of extensions: 1291747
Number of successful extensions: 4337
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4326
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 389
Effective length of database: 12,463,779
Effective search space: 4848410031
Effective search space used: 4848410031
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008399
(1482 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_110517.2| beta-catenin-like protein 1 [Homo sapiens]. 816 0.0
>ref|NP_110517.2| beta-catenin-like protein 1 [Homo sapiens].
Length = 563
Score = 816 bits (2107), Expect = 0.0
Identities = 424/463 (91%), Positives = 424/463 (91%)
Frame = +1
Query: 94 MDVGELLSYQPNRGTKRPRDDEEEELKMXXXXXXXXXXXXXXXXXXXXXXXXXXXKKRLL 273
MDVGELLSYQPNRGTKRPRDDEEEE KM KKRLL
Sbjct: 1 MDVGELLSYQPNRGTKRPRDDEEEEQKMRRKQTGTRERGRYREEEMTVVEEADDDKKRLL 60
Query: 274 QIIDRDGXXXXXXXXPLDESSVKKMILTFEKRSYKNQELRIKFPDNPEKFMESELDLNDI 453
QIIDRDG PLDESSVKKMILTFEKRSYKNQELRIKFPDNPEKFMESELDLNDI
Sbjct: 61 QIIDRDGEEEEEEEEPLDESSVKKMILTFEKRSYKNQELRIKFPDNPEKFMESELDLNDI 120
Query: 454 IQEMHVVATMPDLYHLLVELNAVQSLLGLLGHDNTDVSIAVVDLLQELTDIDTLHESEEG 633
IQEMHVVATMPDLYHLLVELNAVQSLLGLLGHDNTDVSIAVVDLLQELTDIDTLHESEEG
Sbjct: 121 IQEMHVVATMPDLYHLLVELNAVQSLLGLLGHDNTDVSIAVVDLLQELTDIDTLHESEEG 180
Query: 634 AEVLIDALVDGQVVALLVQNLERLDESVKEEADGVHNTLAIVENMAEFRPEMCTEAAQQG 813
AEVLIDALVDGQVVALLVQNLERLDESVKEEADGVHNTLAIVENMAEFRPEMCTE AQQG
Sbjct: 181 AEVLIDALVDGQVVALLVQNLERLDESVKEEADGVHNTLAIVENMAEFRPEMCTEGAQQG 240
Query: 814 LLQWLLKRLKAKMPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLLQQLSVFKRHN 993
LLQWLLKRLKAKMPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLLQQLSVFKRHN
Sbjct: 241 LLQWLLKRLKAKMPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLLQQLSVFKRHN 300
Query: 994 PSTAEEQEMMENLFDSLCSCLMLSSNRERFLKGEGLQLMNLMLREKKISRSSALKVLDHA 1173
PSTAEEQEMMENLFDSLCSCLMLSSNRERFLKGEGLQLMNLMLREKKISRSSALKVLDHA
Sbjct: 301 PSTAEEQEMMENLFDSLCSCLMLSSNRERFLKGEGLQLMNLMLREKKISRSSALKVLDHA 360
Query: 1174 MIGPEGTDNCHKFVDILGLRTIFPLFMKSPRKIKKVGTTEKEHEEHVCSILASLLRNLRG 1353
MIGPEGTDNCHKFVDILGLRTIFPLFMKSPRKIKKVGTTEKEHEEHVCSILASLLRNLRG
Sbjct: 361 MIGPEGTDNCHKFVDILGLRTIFPLFMKSPRKIKKVGTTEKEHEEHVCSILASLLRNLRG 420
Query: 1354 QQRTRLLNKFTENDSEKVDRLMELHFKYLDAMQVAHKKIEGEK 1482
QQRTRLLNKFTENDSEKVDRLMELHFKYL AMQVA KKIEGEK
Sbjct: 421 QQRTRLLNKFTENDSEKVDRLMELHFKYLGAMQVADKKIEGEK 463
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 56,760,421
Number of extensions: 1534425
Number of successful extensions: 5188
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5170
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 387
Effective length of database: 14,770,016
Effective search space: 5715996192
Effective search space used: 5715996192
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008399
(1482 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 367 1e-98
>Sscrofa_Chr17
|| Length = 69701581
Score = 367 bits (185), Expect = 1e-98
Identities = 185/185 (100%)
Strand = Plus / Minus
Query: 1122 cagagaaaagaagatttcccggagcagtgccctgaaggtgctggaccatgccatgattgg 1181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46357389 cagagaaaagaagatttcccggagcagtgccctgaaggtgctggaccatgccatgattgg 46357330
Query: 1182 acctgagggcacggacaactgccataagtttgttgacattcttggcttaagaaccatctt 1241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46357329 acctgagggcacggacaactgccataagtttgttgacattcttggcttaagaaccatctt 46357270
Query: 1242 tcccctttttatgaagtctcccaggaagatcaagaaagtgggaaccactgagaaggagca 1301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46357269 tcccctttttatgaagtctcccaggaagatcaagaaagtgggaaccactgagaaggagca 46357210
Query: 1302 tgaag 1306
|||||
Sbjct: 46357209 tgaag 46357205
Score = 295 bits (149), Expect = 4e-77
Identities = 149/149 (100%)
Strand = Plus / Minus
Query: 976 gtgtttaaaagacacaatcctagcacagctgaggagcaggagatgatggagaatctgttt 1035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46391555 gtgtttaaaagacacaatcctagcacagctgaggagcaggagatgatggagaatctgttt 46391496
Query: 1036 gattcactctgttcctgcctaatgctcagttccaatcgtgagcgcttcctgaagggcgag 1095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46391495 gattcactctgttcctgcctaatgctcagttccaatcgtgagcgcttcctgaagggcgag 46391436
Query: 1096 ggtcttcagctgatgaatctcatgctcag 1124
|||||||||||||||||||||||||||||
Sbjct: 46391435 ggtcttcagctgatgaatctcatgctcag 46391407
Score = 202 bits (102), Expect = 4e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 1305 agagcatgtctgttcgatcctggcttccctcctgcggaacctgagagggcagcagcgaac 1364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46278677 agagcatgtctgttcgatcctggcttccctcctgcggaacctgagagggcagcagcgaac 46278736
Query: 1365 ccggcttctgaataaattcacagaaaatgacagcgagaaggt 1406
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46278737 ccggcttctgaataaattcacagaaaatgacagcgagaaggt 46278778
Score = 188 bits (95), Expect = 6e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 657 ggtggacgggcaagtggttgcgctgctcgtgcagaatctcgagcgcctggatgagtctgt 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46401853 ggtggacgggcaagtggttgcgctgctcgtgcagaatctcgagcgcctggatgagtctgt 46401794
Query: 717 gaaagaagaggcagatggcgtccacaacactctgg 751
|||||||||||||||||||||||||||||||||||
Sbjct: 46401793 gaaagaagaggcagatggcgtccacaacactctgg 46401759
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Minus
Query: 751 gctattgtggagaacatggcagagttccggccagagatgtgtacggaggccgcccagcag 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46398812 gctattgtggagaacatggcagagttccggccagagatgtgtacggaggccgcccagcag 46398753
Query: 811 ggtcttctgcagtggctgctgaagcggctgaagg 844
||||||||||||||||||||||||||||||||||
Sbjct: 46398752 ggtcttctgcagtggctgctgaagcggctgaagg 46398719
Score = 151 bits (76), Expect = 1e-33
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 1403 aggttgacaggctgatggaactgcattttaaatatctggatgcaatgcaggtggcccaca 1462
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 46280232 aggttgacaggctgatggaactgcattttaaatatctggatgcaatgcaggtggccgaca 46280291
Query: 1463 agaagattgaaggggaaaaa 1482
||||||||||||||||||||
Sbjct: 46280292 agaagattgaaggggaaaaa 46280311
Score = 149 bits (75), Expect = 5e-33
Identities = 75/75 (100%)
Strand = Plus / Minus
Query: 842 aggcaaagatgcctttcgatgccaacaaactgtattgcagtgaagtgctggccatattgc 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46393387 aggcaaagatgcctttcgatgccaacaaactgtattgcagtgaagtgctggccatattgc 46393328
Query: 902 tccaggacaatgatg 916
|||||||||||||||
Sbjct: 46393327 tccaggacaatgatg 46393313
Score = 125 bits (63), Expect = 7e-26
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 916 gaaaacagggaattgcttggggagctggatggaattgatgtgcttcttcagcagttatcc 975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46393075 gaaaacagggaattgcttggggagctggatggaattgatgtgcttcttcagcagttatcc 46393016
Query: 976 gtg 978
|||
Sbjct: 46393015 gtg 46393013
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 45,087,382
Number of extensions: 250
Number of successful extensions: 250
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 8
Length of query: 1482
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1461
Effective length of database: 2,808,413,156
Effective search space: 4103091620916
Effective search space used: 4103091620916
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)