Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008435
(793 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035653.1| oxidoreductase HTATIP2 [Bos taurus]. 376 e-104
>ref|NP_001035653.1| oxidoreductase HTATIP2 [Bos taurus].
Length = 242
Score = 376 bits (965), Expect = e-104
Identities = 185/193 (95%), Positives = 191/193 (98%)
Frame = +2
Query: 215 MAETEALPKLREDFRMQNKSVFILGASGETGRVLLKEILEQSLFSKVTLIGRRKLTFDEE 394
MAETEALPKLREDFRMQNKSVFILGASGETGRVLLKEILEQ LFSKVTLIGRRKLT DEE
Sbjct: 1 MAETEALPKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTLDEE 60
Query: 395 AYKNVNQEVVDFEKLDDYASAFQGHEVGFCCLGTTRRKAGAEGFVRVDRDYILKSAELAK 574
AYKNVNQEVVDFEKLDDYASAFQGH+VGFCCLGTTR+KAGAEGFVRVDRDY+LKSAELAK
Sbjct: 61 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRKKAGAEGFVRVDRDYVLKSAELAK 120
Query: 575 AGGCKHFNLLSAKGADKSSNFLYLQVKGEVEARIEELKFDRYSIFRPGVLLCDRQESRPG 754
+GGCKHFNLLS+KGADKSSNFLYLQVKGEVEAR+EELKFDRYSIFRPGVLLCDRQESRPG
Sbjct: 121 SGGCKHFNLLSSKGADKSSNFLYLQVKGEVEARVEELKFDRYSIFRPGVLLCDRQESRPG 180
Query: 755 EWLVRKFFGSLPE 793
EWLVRKFFGSLPE
Sbjct: 181 EWLVRKFFGSLPE 193
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 29,951,241
Number of extensions: 856381
Number of successful extensions: 3862
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3849
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 17,681,374
Length adjustment: 100
Effective length of query: 164
Effective length of database: 14,372,574
Effective search space: 2357102136
Effective search space used: 2357102136
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008435
(793 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534088.1| PREDICTED: similar to HIV-1 Tat interactive pro... 367 e-102
>ref|XP_534088.1| PREDICTED: similar to HIV-1 Tat interactive protein 2, 30kDa [Canis
familiaris].
Length = 242
Score = 367 bits (941), Expect = e-102
Identities = 179/193 (92%), Positives = 189/193 (97%)
Frame = +2
Query: 215 MAETEALPKLREDFRMQNKSVFILGASGETGRVLLKEILEQSLFSKVTLIGRRKLTFDEE 394
MA T ALPKLREDFRMQNKSVFILGASGETGRVLL+EILEQ+LFSKVTLIGRR+LTFDEE
Sbjct: 1 MAGTPALPKLREDFRMQNKSVFILGASGETGRVLLREILEQNLFSKVTLIGRRRLTFDEE 60
Query: 395 AYKNVNQEVVDFEKLDDYASAFQGHEVGFCCLGTTRRKAGAEGFVRVDRDYILKSAELAK 574
AYKNVNQEVVDFEKLDDYASAFQGH+VGFCCLGTTR+KAGAEGFVRVDRDY+ KSAELAK
Sbjct: 61 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRKKAGAEGFVRVDRDYVFKSAELAK 120
Query: 575 AGGCKHFNLLSAKGADKSSNFLYLQVKGEVEARIEELKFDRYSIFRPGVLLCDRQESRPG 754
AGGCKHFNLLS+KGADKSSNFLYLQVKGEVEAR+EEL+FDRYS+FRPGVLLCDRQESRP
Sbjct: 121 AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEARVEELQFDRYSVFRPGVLLCDRQESRPS 180
Query: 755 EWLVRKFFGSLPE 793
EWLVRKFFGSLPE
Sbjct: 181 EWLVRKFFGSLPE 193
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 31,264,160
Number of extensions: 862764
Number of successful extensions: 3864
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3846
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 18,874,504
Length adjustment: 101
Effective length of query: 163
Effective length of database: 15,507,568
Effective search space: 2527733584
Effective search space used: 2527733584
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008435
(793 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122968.2| PREDICTED: oxidoreductase HTATIP2-like [Sus ... 188 3e-48
Alignment gi|XP_003353974.1| PREDICTED: hypothetical protein LOC100626454... 188 3e-48
Alignment gi|XP_003122969.1| PREDICTED: hypothetical protein LOC100521771... 148 4e-36
>ref|XP_003122968.2| PREDICTED: oxidoreductase HTATIP2-like [Sus scrofa].
Length = 161
Score = 188 bits (478), Expect = 3e-48
Identities = 92/92 (100%), Positives = 92/92 (100%)
Frame = +2
Query: 518 EGFVRVDRDYILKSAELAKAGGCKHFNLLSAKGADKSSNFLYLQVKGEVEARIEELKFDR 697
EGFVRVDRDYILKSAELAKAGGCKHFNLLSAKGADKSSNFLYLQVKGEVEARIEELKFDR
Sbjct: 21 EGFVRVDRDYILKSAELAKAGGCKHFNLLSAKGADKSSNFLYLQVKGEVEARIEELKFDR 80
Query: 698 YSIFRPGVLLCDRQESRPGEWLVRKFFGSLPE 793
YSIFRPGVLLCDRQESRPGEWLVRKFFGSLPE
Sbjct: 81 YSIFRPGVLLCDRQESRPGEWLVRKFFGSLPE 112
>ref|XP_003353974.1| PREDICTED: hypothetical protein LOC100626454 [Sus scrofa].
Length = 323
Score = 188 bits (478), Expect = 3e-48
Identities = 92/92 (100%), Positives = 92/92 (100%)
Frame = +2
Query: 518 EGFVRVDRDYILKSAELAKAGGCKHFNLLSAKGADKSSNFLYLQVKGEVEARIEELKFDR 697
EGFVRVDRDYILKSAELAKAGGCKHFNLLSAKGADKSSNFLYLQVKGEVEARIEELKFDR
Sbjct: 183 EGFVRVDRDYILKSAELAKAGGCKHFNLLSAKGADKSSNFLYLQVKGEVEARIEELKFDR 242
Query: 698 YSIFRPGVLLCDRQESRPGEWLVRKFFGSLPE 793
YSIFRPGVLLCDRQESRPGEWLVRKFFGSLPE
Sbjct: 243 YSIFRPGVLLCDRQESRPGEWLVRKFFGSLPE 274
>ref|XP_003122969.1| PREDICTED: hypothetical protein LOC100521771 [Sus scrofa].
Length = 307
Score = 148 bits (373), Expect = 4e-36
Identities = 76/77 (98%), Positives = 76/77 (98%)
Frame = +2
Query: 179 RPEDAGLGAGSSMAETEALPKLREDFRMQNKSVFILGASGETGRVLLKEILEQSLFSKVT 358
RPED GLGAGSSMAETEALPKLREDFRMQNKSVFILGASGETGRVLLKEILEQSLFSKVT
Sbjct: 60 RPEDEGLGAGSSMAETEALPKLREDFRMQNKSVFILGASGETGRVLLKEILEQSLFSKVT 119
Query: 359 LIGRRKLTFDEEAYKNV 409
LIGRRKLTFDEEAYKNV
Sbjct: 120 LIGRRKLTFDEEAYKNV 136
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,594,826
Number of extensions: 588806
Number of successful extensions: 2528
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2512
Number of HSP's successfully gapped: 3
Length of query: 264
Length of database: 11,343,932
Length adjustment: 97
Effective length of query: 167
Effective length of database: 8,928,923
Effective search space: 1491130141
Effective search space used: 1491130141
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008435
(793 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_058561.2| oxidoreductase HTATIP2 isoform a [Mus musculus]. 363 e-101
Alignment gi|NP_001139525.1| oxidoreductase HTATIP2 isoform b [Mus muscul... 355 3e-98
Alignment gi|NP_001139524.1| oxidoreductase HTATIP2 isoform b [Mus muscul... 355 3e-98
Alignment gi|NP_001139522.1| oxidoreductase HTATIP2 isoform b [Mus muscul... 355 3e-98
Alignment gi|NP_001139521.1| oxidoreductase HTATIP2 isoform b [Mus muscul... 355 3e-98
>ref|NP_058561.2| oxidoreductase HTATIP2 isoform a [Mus musculus].
Length = 275
Score = 363 bits (932), Expect = e-101
Identities = 178/202 (88%), Positives = 192/202 (95%)
Frame = +2
Query: 188 DAGLGAGSSMAETEALPKLREDFRMQNKSVFILGASGETGRVLLKEILEQSLFSKVTLIG 367
D G GA SMA+ EALPKLREDF+MQNKSVFILGASGETG+VLLKEIL Q+LFSKVTLIG
Sbjct: 25 DEGSGAAPSMADKEALPKLREDFKMQNKSVFILGASGETGKVLLKEILGQNLFSKVTLIG 84
Query: 368 RRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHEVGFCCLGTTRRKAGAEGFVRVDRDY 547
RRKLTF+EEAYKNVNQEVVDFEKLD YASAFQGH+VGFCCLGTTR KAGAEGFVRVDRDY
Sbjct: 85 RRKLTFEEEAYKNVNQEVVDFEKLDVYASAFQGHDVGFCCLGTTRSKAGAEGFVRVDRDY 144
Query: 548 ILKSAELAKAGGCKHFNLLSAKGADKSSNFLYLQVKGEVEARIEELKFDRYSIFRPGVLL 727
+LKSAELAKAGGCKHFNLLS++GADKSS+FLYLQVKGEVEA++EELKFDR S+FRPGVLL
Sbjct: 145 VLKSAELAKAGGCKHFNLLSSRGADKSSSFLYLQVKGEVEAKVEELKFDRLSVFRPGVLL 204
Query: 728 CDRQESRPGEWLVRKFFGSLPE 793
CDRQESRPGEWL RKFFGSLP+
Sbjct: 205 CDRQESRPGEWLARKFFGSLPD 226
>ref|NP_001139525.1| oxidoreductase HTATIP2 isoform b [Mus musculus].
Length = 242
Score = 355 bits (910), Expect = 3e-98
Identities = 173/193 (89%), Positives = 187/193 (96%)
Frame = +2
Query: 215 MAETEALPKLREDFRMQNKSVFILGASGETGRVLLKEILEQSLFSKVTLIGRRKLTFDEE 394
MA+ EALPKLREDF+MQNKSVFILGASGETG+VLLKEIL Q+LFSKVTLIGRRKLTF+EE
Sbjct: 1 MADKEALPKLREDFKMQNKSVFILGASGETGKVLLKEILGQNLFSKVTLIGRRKLTFEEE 60
Query: 395 AYKNVNQEVVDFEKLDDYASAFQGHEVGFCCLGTTRRKAGAEGFVRVDRDYILKSAELAK 574
AYKNVNQEVVDFEKLD YASAFQGH+VGFCCLGTTR KAGAEGFVRVDRDY+LKSAELAK
Sbjct: 61 AYKNVNQEVVDFEKLDVYASAFQGHDVGFCCLGTTRSKAGAEGFVRVDRDYVLKSAELAK 120
Query: 575 AGGCKHFNLLSAKGADKSSNFLYLQVKGEVEARIEELKFDRYSIFRPGVLLCDRQESRPG 754
AGGCKHFNLLS++GADKSS+FLYLQVKGEVEA++EELKFDR S+FRPGVLLCDRQESRPG
Sbjct: 121 AGGCKHFNLLSSRGADKSSSFLYLQVKGEVEAKVEELKFDRLSVFRPGVLLCDRQESRPG 180
Query: 755 EWLVRKFFGSLPE 793
EWL RKFFGSLP+
Sbjct: 181 EWLARKFFGSLPD 193
>ref|NP_001139524.1| oxidoreductase HTATIP2 isoform b [Mus musculus].
Length = 242
Score = 355 bits (910), Expect = 3e-98
Identities = 173/193 (89%), Positives = 187/193 (96%)
Frame = +2
Query: 215 MAETEALPKLREDFRMQNKSVFILGASGETGRVLLKEILEQSLFSKVTLIGRRKLTFDEE 394
MA+ EALPKLREDF+MQNKSVFILGASGETG+VLLKEIL Q+LFSKVTLIGRRKLTF+EE
Sbjct: 1 MADKEALPKLREDFKMQNKSVFILGASGETGKVLLKEILGQNLFSKVTLIGRRKLTFEEE 60
Query: 395 AYKNVNQEVVDFEKLDDYASAFQGHEVGFCCLGTTRRKAGAEGFVRVDRDYILKSAELAK 574
AYKNVNQEVVDFEKLD YASAFQGH+VGFCCLGTTR KAGAEGFVRVDRDY+LKSAELAK
Sbjct: 61 AYKNVNQEVVDFEKLDVYASAFQGHDVGFCCLGTTRSKAGAEGFVRVDRDYVLKSAELAK 120
Query: 575 AGGCKHFNLLSAKGADKSSNFLYLQVKGEVEARIEELKFDRYSIFRPGVLLCDRQESRPG 754
AGGCKHFNLLS++GADKSS+FLYLQVKGEVEA++EELKFDR S+FRPGVLLCDRQESRPG
Sbjct: 121 AGGCKHFNLLSSRGADKSSSFLYLQVKGEVEAKVEELKFDRLSVFRPGVLLCDRQESRPG 180
Query: 755 EWLVRKFFGSLPE 793
EWL RKFFGSLP+
Sbjct: 181 EWLARKFFGSLPD 193
>ref|NP_001139522.1| oxidoreductase HTATIP2 isoform b [Mus musculus].
Length = 242
Score = 355 bits (910), Expect = 3e-98
Identities = 173/193 (89%), Positives = 187/193 (96%)
Frame = +2
Query: 215 MAETEALPKLREDFRMQNKSVFILGASGETGRVLLKEILEQSLFSKVTLIGRRKLTFDEE 394
MA+ EALPKLREDF+MQNKSVFILGASGETG+VLLKEIL Q+LFSKVTLIGRRKLTF+EE
Sbjct: 1 MADKEALPKLREDFKMQNKSVFILGASGETGKVLLKEILGQNLFSKVTLIGRRKLTFEEE 60
Query: 395 AYKNVNQEVVDFEKLDDYASAFQGHEVGFCCLGTTRRKAGAEGFVRVDRDYILKSAELAK 574
AYKNVNQEVVDFEKLD YASAFQGH+VGFCCLGTTR KAGAEGFVRVDRDY+LKSAELAK
Sbjct: 61 AYKNVNQEVVDFEKLDVYASAFQGHDVGFCCLGTTRSKAGAEGFVRVDRDYVLKSAELAK 120
Query: 575 AGGCKHFNLLSAKGADKSSNFLYLQVKGEVEARIEELKFDRYSIFRPGVLLCDRQESRPG 754
AGGCKHFNLLS++GADKSS+FLYLQVKGEVEA++EELKFDR S+FRPGVLLCDRQESRPG
Sbjct: 121 AGGCKHFNLLSSRGADKSSSFLYLQVKGEVEAKVEELKFDRLSVFRPGVLLCDRQESRPG 180
Query: 755 EWLVRKFFGSLPE 793
EWL RKFFGSLP+
Sbjct: 181 EWLARKFFGSLPD 193
>ref|NP_001139521.1| oxidoreductase HTATIP2 isoform b [Mus musculus].
Length = 242
Score = 355 bits (910), Expect = 3e-98
Identities = 173/193 (89%), Positives = 187/193 (96%)
Frame = +2
Query: 215 MAETEALPKLREDFRMQNKSVFILGASGETGRVLLKEILEQSLFSKVTLIGRRKLTFDEE 394
MA+ EALPKLREDF+MQNKSVFILGASGETG+VLLKEIL Q+LFSKVTLIGRRKLTF+EE
Sbjct: 1 MADKEALPKLREDFKMQNKSVFILGASGETGKVLLKEILGQNLFSKVTLIGRRKLTFEEE 60
Query: 395 AYKNVNQEVVDFEKLDDYASAFQGHEVGFCCLGTTRRKAGAEGFVRVDRDYILKSAELAK 574
AYKNVNQEVVDFEKLD YASAFQGH+VGFCCLGTTR KAGAEGFVRVDRDY+LKSAELAK
Sbjct: 61 AYKNVNQEVVDFEKLDVYASAFQGHDVGFCCLGTTRSKAGAEGFVRVDRDYVLKSAELAK 120
Query: 575 AGGCKHFNLLSAKGADKSSNFLYLQVKGEVEARIEELKFDRYSIFRPGVLLCDRQESRPG 754
AGGCKHFNLLS++GADKSS+FLYLQVKGEVEA++EELKFDR S+FRPGVLLCDRQESRPG
Sbjct: 121 AGGCKHFNLLSSRGADKSSSFLYLQVKGEVEAKVEELKFDRLSVFRPGVLLCDRQESRPG 180
Query: 755 EWLVRKFFGSLPE 793
EWL RKFFGSLP+
Sbjct: 181 EWLARKFFGSLPD 193
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 25,656,135
Number of extensions: 694671
Number of successful extensions: 2848
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2829
Number of HSP's successfully gapped: 5
Length of query: 264
Length of database: 15,617,559
Length adjustment: 99
Effective length of query: 165
Effective length of database: 12,643,995
Effective search space: 2086259175
Effective search space used: 2086259175
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008435
(793 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001091990.1| oxidoreductase HTATIP2 isoform a [Homo sapie... 385 e-107
Alignment gi|NP_001091992.1| oxidoreductase HTATIP2 isoform b [Homo sapie... 372 e-103
Alignment gi|NP_001091991.1| oxidoreductase HTATIP2 isoform b [Homo sapie... 372 e-103
Alignment gi|NP_006401.3| oxidoreductase HTATIP2 isoform b [Homo sapiens]. 372 e-103
Alignment gi|NP_001091993.1| oxidoreductase HTATIP2 isoform c [Homo sapie... 192 2e-49
>ref|NP_001091990.1| oxidoreductase HTATIP2 isoform a [Homo sapiens].
Length = 276
Score = 385 bits (990), Expect = e-107
Identities = 191/205 (93%), Positives = 198/205 (96%)
Frame = +2
Query: 179 RPEDAGLGAGSSMAETEALPKLREDFRMQNKSVFILGASGETGRVLLKEILEQSLFSKVT 358
R ED G GAG SMAETEAL KLREDFRMQNKSVFILGASGETGRVLLKEILEQ LFSKVT
Sbjct: 23 RREDPGPGAGPSMAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVT 82
Query: 359 LIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHEVGFCCLGTTRRKAGAEGFVRVD 538
LIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGH+VGFCCLGTTR KAGAEGFVRVD
Sbjct: 83 LIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVD 142
Query: 539 RDYILKSAELAKAGGCKHFNLLSAKGADKSSNFLYLQVKGEVEARIEELKFDRYSIFRPG 718
RDY+LKSAELAKAGGCKHFNLLS+KGADKSSNFLYLQVKGEVEA++EELKFDRYS+FRPG
Sbjct: 143 RDYVLKSAELAKAGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPG 202
Query: 719 VLLCDRQESRPGEWLVRKFFGSLPE 793
VLLCDRQESRPGEWLVRKFFGSLP+
Sbjct: 203 VLLCDRQESRPGEWLVRKFFGSLPD 227
>ref|NP_001091992.1| oxidoreductase HTATIP2 isoform b [Homo sapiens].
Length = 242
Score = 372 bits (955), Expect = e-103
Identities = 183/193 (94%), Positives = 190/193 (98%)
Frame = +2
Query: 215 MAETEALPKLREDFRMQNKSVFILGASGETGRVLLKEILEQSLFSKVTLIGRRKLTFDEE 394
MAETEAL KLREDFRMQNKSVFILGASGETGRVLLKEILEQ LFSKVTLIGRRKLTFDEE
Sbjct: 1 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 60
Query: 395 AYKNVNQEVVDFEKLDDYASAFQGHEVGFCCLGTTRRKAGAEGFVRVDRDYILKSAELAK 574
AYKNVNQEVVDFEKLDDYASAFQGH+VGFCCLGTTR KAGAEGFVRVDRDY+LKSAELAK
Sbjct: 61 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK 120
Query: 575 AGGCKHFNLLSAKGADKSSNFLYLQVKGEVEARIEELKFDRYSIFRPGVLLCDRQESRPG 754
AGGCKHFNLLS+KGADKSSNFLYLQVKGEVEA++EELKFDRYS+FRPGVLLCDRQESRPG
Sbjct: 121 AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG 180
Query: 755 EWLVRKFFGSLPE 793
EWLVRKFFGSLP+
Sbjct: 181 EWLVRKFFGSLPD 193
>ref|NP_001091991.1| oxidoreductase HTATIP2 isoform b [Homo sapiens].
Length = 242
Score = 372 bits (955), Expect = e-103
Identities = 183/193 (94%), Positives = 190/193 (98%)
Frame = +2
Query: 215 MAETEALPKLREDFRMQNKSVFILGASGETGRVLLKEILEQSLFSKVTLIGRRKLTFDEE 394
MAETEAL KLREDFRMQNKSVFILGASGETGRVLLKEILEQ LFSKVTLIGRRKLTFDEE
Sbjct: 1 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 60
Query: 395 AYKNVNQEVVDFEKLDDYASAFQGHEVGFCCLGTTRRKAGAEGFVRVDRDYILKSAELAK 574
AYKNVNQEVVDFEKLDDYASAFQGH+VGFCCLGTTR KAGAEGFVRVDRDY+LKSAELAK
Sbjct: 61 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK 120
Query: 575 AGGCKHFNLLSAKGADKSSNFLYLQVKGEVEARIEELKFDRYSIFRPGVLLCDRQESRPG 754
AGGCKHFNLLS+KGADKSSNFLYLQVKGEVEA++EELKFDRYS+FRPGVLLCDRQESRPG
Sbjct: 121 AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG 180
Query: 755 EWLVRKFFGSLPE 793
EWLVRKFFGSLP+
Sbjct: 181 EWLVRKFFGSLPD 193
>ref|NP_006401.3| oxidoreductase HTATIP2 isoform b [Homo sapiens].
Length = 242
Score = 372 bits (955), Expect = e-103
Identities = 183/193 (94%), Positives = 190/193 (98%)
Frame = +2
Query: 215 MAETEALPKLREDFRMQNKSVFILGASGETGRVLLKEILEQSLFSKVTLIGRRKLTFDEE 394
MAETEAL KLREDFRMQNKSVFILGASGETGRVLLKEILEQ LFSKVTLIGRRKLTFDEE
Sbjct: 1 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 60
Query: 395 AYKNVNQEVVDFEKLDDYASAFQGHEVGFCCLGTTRRKAGAEGFVRVDRDYILKSAELAK 574
AYKNVNQEVVDFEKLDDYASAFQGH+VGFCCLGTTR KAGAEGFVRVDRDY+LKSAELAK
Sbjct: 61 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK 120
Query: 575 AGGCKHFNLLSAKGADKSSNFLYLQVKGEVEARIEELKFDRYSIFRPGVLLCDRQESRPG 754
AGGCKHFNLLS+KGADKSSNFLYLQVKGEVEA++EELKFDRYS+FRPGVLLCDRQESRPG
Sbjct: 121 AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG 180
Query: 755 EWLVRKFFGSLPE 793
EWLVRKFFGSLP+
Sbjct: 181 EWLVRKFFGSLPD 193
>ref|NP_001091993.1| oxidoreductase HTATIP2 isoform c [Homo sapiens].
Length = 133
Score = 192 bits (489), Expect = 2e-49
Identities = 97/101 (96%), Positives = 98/101 (97%)
Frame = +2
Query: 215 MAETEALPKLREDFRMQNKSVFILGASGETGRVLLKEILEQSLFSKVTLIGRRKLTFDEE 394
MAETEAL KLREDFRMQNKSVFILGASGETGRVLLKEILEQ LFSKVTLIGRRKLTFDEE
Sbjct: 1 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 60
Query: 395 AYKNVNQEVVDFEKLDDYASAFQGHEVGFCCLGTTRRKAGA 517
AYKNVNQEVVDFEKLDDYASAFQGH+VGFCCLGTTR KAGA
Sbjct: 61 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGA 101
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 30,449,986
Number of extensions: 838293
Number of successful extensions: 3665
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3648
Number of HSP's successfully gapped: 5
Length of query: 264
Length of database: 18,297,164
Length adjustment: 101
Effective length of query: 163
Effective length of database: 14,967,800
Effective search space: 2439751400
Effective search space used: 2439751400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008435
(793 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 385 e-104
>Sscrofa_Chr02
|| Length = 162569375
Score = 385 bits (194), Expect = e-104
Identities = 197/198 (99%)
Strand = Plus / Plus
Query: 212 agcatggccgagacagaagcgctgccgaagcttcgggaagacttcaggatgcagaataaa 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41964072 agcatggccgagacagaagcgctgccgaagcttcgggaagacttcaggatgcagaataaa 41964131
Query: 272 tccgtctttattctgggcgccagcggggaaaccggccgagtgctgctgaaggaaatcctg 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41964132 tccgtctttattctgggcgccagcggggaaaccggccgagtgctgctgaaggaaatcctg 41964191
Query: 332 gaacagagcctattttccaaagtcacgcttattggccggaggaagctcacattcgacgag 391
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 41964192 gaacagagcctattttccaaagtcacgctcattggccggaggaagctcacattcgacgag 41964251
Query: 392 gaagcttataaaaacgtg 409
||||||||||||||||||
Sbjct: 41964252 gaagcttataaaaacgtg 41964269
Score = 278 bits (140), Expect = 4e-72
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 517 ggagggatttgttcgtgttgatcgagattacatcctcaagtctgcagagctggccaaagc 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41975617 ggagggatttgttcgtgttgatcgagattacatcctcaagtctgcagagctggccaaagc 41975676
Query: 577 tggagggtgcaaacatttcaacttgctgtccgctaagggagctgataagtcaagcaactt 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41975677 tggagggtgcaaacatttcaacttgctgtccgctaagggagctgataagtcaagcaactt 41975736
Query: 637 tttatatctgcaagtcaagg 656
||||||||||||||||||||
Sbjct: 41975737 tttatatctgcaagtcaagg 41975756
Score = 224 bits (113), Expect = 6e-56
Identities = 122/124 (98%), Gaps = 2/124 (1%)
Strand = Plus / Plus
Query: 1 gcgatgtcaccggaagacgaagtagggaaggcgccaacccggg--gggcccgatcgagtt 58
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 41963507 gcgatgtcaccggaagacgaagtagggaaggcgccaacccgggaggggcccgatcgagtt 41963566
Query: 59 gggacagaacgaggaggaggcgcaggcaggaggcatggccggatgtcgcggcccgtagcc 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41963567 gggacagaacgaggaggaggcgcaggcaggaggcatggccggatgtcgcggcccgtagcc 41963626
Query: 119 ctaa 122
||||
Sbjct: 41963627 ctaa 41963630
Score = 210 bits (106), Expect = 9e-52
Identities = 109/110 (99%)
Strand = Plus / Plus
Query: 409 gaatcaagaagtggtggactttgaaaaattggatgactacgcttctgcctttcaaggtca 468
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 41965733 gaatcaagaagtggtggactttgaaaagttggatgactacgcttctgcctttcaaggtca 41965792
Query: 469 tgaggttggattctgttgcctgggtactaccagaagaaaagctggggcgg 518
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41965793 tgaggttggattctgttgcctgggtactaccagaagaaaagctggggcgg 41965842
Score = 153 bits (77), Expect = 2e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 717 gagttctgttatgtgataggcaagaatctcgcccaggtgaatggttggttaggaagttct 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41979494 gagttctgttatgtgataggcaagaatctcgcccaggtgaatggttggttaggaagttct 41979553
Query: 777 ttggctccttaccagaa 793
|||||||||||||||||
Sbjct: 41979554 ttggctccttaccagaa 41979570
Score = 127 bits (64), Expect = 1e-26
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 654 agggagaagtggaagctagaattgaagaattaaaatttgatcgttactccatatttaggc 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41978713 agggagaagtggaagctagaattgaagaattaaaatttgatcgttactccatatttaggc 41978772
Query: 714 cagg 717
||||
Sbjct: 41978773 cagg 41978776
Score = 113 bits (57), Expect = 1e-22
Identities = 60/61 (98%)
Strand = Plus / Plus
Query: 153 tgctagtggccgccctgctcctgttgcggcctgaggacgcagggctgggggccgggtcca 212
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 41963661 tgctagtggccgccctgctcctgttgcggcctgaggacgaagggctgggggccgggtcca 41963720
Query: 213 g 213
|
Sbjct: 41963721 g 41963721
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 20,381,927
Number of extensions: 396
Number of successful extensions: 396
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 395
Number of HSP's successfully gapped: 7
Length of query: 793
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 772
Effective length of database: 2,808,413,156
Effective search space: 2168094956432
Effective search space used: 2168094956432
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)