Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008451
(957 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001028799.1| beclin-1 [Bos taurus]. 426 e-119
>ref|NP_001028799.1| beclin-1 [Bos taurus].
Length = 448
Score = 426 bits (1095), Expect = e-119
Identities = 222/267 (83%), Positives = 227/267 (85%)
Frame = +2
Query: 155 MEGSKTSSSTMQVSFVCQRCSQPLKLDTSFKILDRVTIQELTAPLLATAQVKPGETQEEE 334
MEGSKTSSSTMQVSFVCQRCSQPLKLDTSFKILDRVTIQELTAPLLATAQ+KPGETQEEE
Sbjct: 1 MEGSKTSSSTMQVSFVCQRCSQPLKLDTSFKILDRVTIQELTAPLLATAQLKPGETQEEE 60
Query: 335 ANPGEEPFIETRQDGVSRRFIPPARMMSTESANSFTLIGEASDGGTMENLSRRLKVTGDL 514
AN GEEPFIETRQDGVSRRFIPPARMMSTESANSFTLIGEASDGGTMENLSRRLKVTGDL
Sbjct: 61 ANSGEEPFIETRQDGVSRRFIPPARMMSTESANSFTLIGEASDGGTMENLSRRLKVTGDL 120
Query: 515 FDIMSGQTDVDHPLCEECXXXXXXXXXXXXNVTENECQNYKRCLEILEQMHEDDSXXXXX 694
FDIMSGQTDVDHPLCEEC NVTENECQNYKRCLEILEQM+EDDS
Sbjct: 121 FDIMSGQTDVDHPLCEECTDTLLDQLDTQLNVTENECQNYKRCLEILEQMNEDDSEQLGL 180
Query: 695 XXXXXXXXXXXXXXXXXXXXKNRIIVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLE 874
KNR IVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLE
Sbjct: 181 ELKELALEEERLIQELEDVEKNRKIVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLE 240
Query: 875 LDDELKSVENQMRYAQMQLEQTEKTNV 955
LDDELKSVENQMRYAQMQL++ +KTNV
Sbjct: 241 LDDELKSVENQMRYAQMQLDKLKKTNV 267
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,404,391
Number of extensions: 842075
Number of successful extensions: 3987
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3967
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 217
Effective length of database: 14,306,398
Effective search space: 3104488366
Effective search space used: 3104488366
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008451
(957 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537634.2| PREDICTED: similar to Beclin 1 (Coiled-coil myo... 148 6e-36
Alignment gi|XP_849093.1| PREDICTED: similar to Beclin 1 (Coiled-coil myo... 140 2e-33
Alignment gi|XP_547492.2| PREDICTED: similar to Beclin 1 (Coiled-coil myo... 125 8e-29
>ref|XP_537634.2| PREDICTED: similar to Beclin 1 (Coiled-coil myosin-like
BCL2-interacting protein) (Protein GT197) isoform 1
[Canis familiaris].
Length = 362
Score = 148 bits (374), Expect = 6e-36
Identities = 73/75 (97%), Positives = 74/75 (98%)
Frame = +2
Query: 185 MQVSFVCQRCSQPLKLDTSFKILDRVTIQELTAPLLATAQVKPGETQEEEANPGEEPFIE 364
MQVSFVCQRCSQPLKLDTSFKILDRVTIQELTAPLLATAQVKPGETQEEEAN GEEPF+E
Sbjct: 1 MQVSFVCQRCSQPLKLDTSFKILDRVTIQELTAPLLATAQVKPGETQEEEANSGEEPFLE 60
Query: 365 TRQDGVSRRFIPPAR 409
TRQDGVSRRFIPPAR
Sbjct: 61 TRQDGVSRRFIPPAR 75
Score = 139 bits (351), Expect = 3e-33
Identities = 75/107 (70%), Positives = 80/107 (74%)
Frame = +2
Query: 635 KRCLEILEQMHEDDSXXXXXXXXXXXXXXXXXXXXXXXXXKNRIIVAENLEKVQAEAERL 814
+RCLEILEQM+EDDS KNR IVAENLEKVQAEAERL
Sbjct: 75 RRCLEILEQMNEDDSEQLQMELRELALEEERLIQELEEVEKNRKIVAENLEKVQAEAERL 134
Query: 815 DQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLEQTEKTNV 955
DQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQL++ +KTNV
Sbjct: 135 DQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLKKTNV 181
>ref|XP_849093.1| PREDICTED: similar to Beclin 1 (Coiled-coil myosin-like
BCL2-interacting protein) (Protein GT197) isoform 3
[Canis familiaris].
Length = 376
Score = 140 bits (352), Expect = 2e-33
Identities = 75/110 (68%), Positives = 82/110 (74%)
Frame = +2
Query: 626 QNYKRCLEILEQMHEDDSXXXXXXXXXXXXXXXXXXXXXXXXXKNRIIVAENLEKVQAEA 805
++ +RCLEILEQM+EDDS KNR IVAENLEKVQAEA
Sbjct: 60 ESLERCLEILEQMNEDDSEQLQMELRELALEEERLIQELEEVEKNRKIVAENLEKVQAEA 119
Query: 806 ERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLEQTEKTNV 955
ERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQL++ +KTNV
Sbjct: 120 ERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLKKTNV 169
Score = 89.0 bits (219), Expect = 6e-18
Identities = 44/51 (86%), Positives = 46/51 (90%)
Frame = +2
Query: 155 MEGSKTSSSTMQVSFVCQRCSQPLKLDTSFKILDRVTIQELTAPLLATAQV 307
MEGSK SSSTMQVSFVCQRCSQPLKLDTSFKILDRVTIQELTAP+ A +
Sbjct: 1 MEGSKASSSTMQVSFVCQRCSQPLKLDTSFKILDRVTIQELTAPVAQCAPI 51
>ref|XP_547492.2| PREDICTED: similar to Beclin 1 (Coiled-coil myosin-like
BCL2-interacting protein) (Protein GT197) [Canis
familiaris].
Length = 452
Score = 125 bits (313), Expect = 8e-29
Identities = 84/261 (32%), Positives = 128/261 (49%), Gaps = 6/261 (2%)
Frame = +2
Query: 191 VSFVCQRCSQPLKLDTSFKILDRVTIQELTAPLLATAQVKPGETQEEEANPGEEPFIETR 370
+ F+CQ C QP++L S L T Q A +AQ +P ET P + I+T
Sbjct: 4 IRFICQGCRQPMRLSQSTGTLGLETTQRPAASTFTSAQQEPRETLVR--GPTSKVEIDTE 61
Query: 371 Q-DGVSRRFIPPARMMSTESANSFTLIGEASDGGTMENLSRRLKVTGDLFDIMSGQTDVD 547
+ S +P M +S +F L+G+ T+ N+ T D+FDI++G+ VD
Sbjct: 62 KLPDASCSTLPGDGKMFGDSPKNFILLGKFDSARTLSNIQN---TTRDIFDILTGEKYVD 118
Query: 548 HPLCEECXXXXXXXXXXXXNVTENECQNYKR-----CLEILEQMHEDDSXXXXXXXXXXX 712
HPLCE+C + ++E ++YK C E ++ + E+
Sbjct: 119 HPLCEDCTDKLLEVLDTQLIIVDSENEHYKYWRGRICEEEMKTLQEE--------LEGLE 170
Query: 713 XXXXXXXXXXXXXXKNRIIVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELK 892
+ VAE+LE QAE E L+Q++ QY ++YS K QQLEL DELK
Sbjct: 171 LEEARLVQELKEVENKQERVAEDLEAAQAETEMLEQQDKQYWKDYSNLKWQQLELQDELK 230
Query: 893 SVENQMRYAQMQLEQTEKTNV 955
S+E Q+R+AQ+Q + +KT+V
Sbjct: 231 SMERQLRHAQIQWGRLKKTSV 251
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 33,972,958
Number of extensions: 873838
Number of successful extensions: 4558
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4532
Number of HSP's successfully gapped: 6
Length of query: 319
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 216
Effective length of database: 15,440,896
Effective search space: 3335233536
Effective search space used: 3335233536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008451
(957 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001037995.1| beclin-1 [Sus scrofa]. 433 e-122
Alignment gi|XP_003130605.1| PREDICTED: beclin-1-like protein 1-like [Sus... 152 2e-37
>ref|NP_001037995.1| beclin-1 [Sus scrofa].
Length = 448
Score = 433 bits (1113), Expect = e-122
Identities = 225/267 (84%), Positives = 228/267 (85%)
Frame = +2
Query: 155 MEGSKTSSSTMQVSFVCQRCSQPLKLDTSFKILDRVTIQELTAPLLATAQVKPGETQEEE 334
MEGSKTSSSTMQVSFVCQRCSQPLKLDTSFKILDRVTIQELTAPLLATAQVKPGETQEEE
Sbjct: 1 MEGSKTSSSTMQVSFVCQRCSQPLKLDTSFKILDRVTIQELTAPLLATAQVKPGETQEEE 60
Query: 335 ANPGEEPFIETRQDGVSRRFIPPARMMSTESANSFTLIGEASDGGTMENLSRRLKVTGDL 514
ANPGEEPFIETRQDGVSRRFIPPARMMSTESANSFTLIGEASDGGTMENLSRRLKVTGDL
Sbjct: 61 ANPGEEPFIETRQDGVSRRFIPPARMMSTESANSFTLIGEASDGGTMENLSRRLKVTGDL 120
Query: 515 FDIMSGQTDVDHPLCEECXXXXXXXXXXXXNVTENECQNYKRCLEILEQMHEDDSXXXXX 694
FDIMSGQTDVDHPLCEEC NVTENECQNYKRCLEILEQMHEDDS
Sbjct: 121 FDIMSGQTDVDHPLCEECTDTLLDQLDTQLNVTENECQNYKRCLEILEQMHEDDSEQLRM 180
Query: 695 XXXXXXXXXXXXXXXXXXXXKNRIIVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLE 874
KNR IVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLE
Sbjct: 181 ELRELALEEERLIQELEEVEKNRKIVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLE 240
Query: 875 LDDELKSVENQMRYAQMQLEQTEKTNV 955
LDDELKSVENQMRYAQMQL++ +KTNV
Sbjct: 241 LDDELKSVENQMRYAQMQLDKLKKTNV 267
>ref|XP_003130605.1| PREDICTED: beclin-1-like protein 1-like [Sus scrofa].
Length = 433
Score = 152 bits (385), Expect = 2e-37
Identities = 100/253 (39%), Positives = 130/253 (51%)
Frame = +2
Query: 197 FVCQRCSQPLKLDTSFKILDRVTIQELTAPLLATAQVKPGETQEEEANPGEEPFIETRQD 376
F+CQRCSQPLKL S + T QE A LL +A+ +PGE Q A+ GE + QD
Sbjct: 6 FICQRCSQPLKLTESTE-----TSQERAASLLHSARGEPGEPQG--ASSGEGASVINLQD 58
Query: 377 GVSRRFIPPARMMSTESANSFTLIGEASDGGTMENLSRRLKVTGDLFDIMSGQTDVDHPL 556
G S P M S FTL+G G++ +L+ K D+F I+SG+T VDHPL
Sbjct: 59 GASCLPFPGGGMFWASS--EFTLLGRL---GSLRSLNSIQKAIRDIFGILSGETVVDHPL 113
Query: 557 CEECXXXXXXXXXXXXNVTENECQNYKRCLEILEQMHEDDSXXXXXXXXXXXXXXXXXXX 736
C+ C T++E QNY+RCLE E +
Sbjct: 114 CQHCTDCLLEQLDAQLTTTDSEVQNYRRCLETRGWGSEAERETLRKQLKGLELEELRLVQ 173
Query: 737 XXXXXXKNRIIVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRY 916
KNR +LE QAE E LDQ+E QYQ++YS+ K QQLEL DEL SV ++ +
Sbjct: 174 ELEQVQKNRERTTADLEAAQAETEMLDQKEWQYQKDYSKLKWQQLELHDELDSVARRLEH 233
Query: 917 AQMQLEQTEKTNV 955
AQ + +Q EKTNV
Sbjct: 234 AQTRWDQLEKTNV 246
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,908,834
Number of extensions: 544694
Number of successful extensions: 2677
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2667
Number of HSP's successfully gapped: 2
Length of query: 319
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 220
Effective length of database: 8,879,129
Effective search space: 1953408380
Effective search space used: 1953408380
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008451
(957 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062530.2| beclin-1 [Mus musculus]. 419 e-117
Alignment gi|XP_129608.3| PREDICTED: beclin-1-like protein 1-like [Mus mu... 82 5e-16
Alignment gi|XP_001473200.2| PREDICTED: beclin-1-like protein 1-like [Mus... 82 5e-16
>ref|NP_062530.2| beclin-1 [Mus musculus].
Length = 448
Score = 419 bits (1076), Expect = e-117
Identities = 217/267 (81%), Positives = 224/267 (83%)
Frame = +2
Query: 155 MEGSKTSSSTMQVSFVCQRCSQPLKLDTSFKILDRVTIQELTAPLLATAQVKPGETQEEE 334
MEGSK SSSTMQVSFVCQRCSQPLKLDTSFKILDRVTIQELTAPLL TAQ KPGETQEEE
Sbjct: 1 MEGSKASSSTMQVSFVCQRCSQPLKLDTSFKILDRVTIQELTAPLLTTAQAKPGETQEEE 60
Query: 335 ANPGEEPFIETRQDGVSRRFIPPARMMSTESANSFTLIGEASDGGTMENLSRRLKVTGDL 514
AN GEEPFIETRQDGVSRRFIPPARMMSTESANSFTLIGEASDGGTMENLSRRLKVTGDL
Sbjct: 61 ANSGEEPFIETRQDGVSRRFIPPARMMSTESANSFTLIGEASDGGTMENLSRRLKVTGDL 120
Query: 515 FDIMSGQTDVDHPLCEECXXXXXXXXXXXXNVTENECQNYKRCLEILEQMHEDDSXXXXX 694
FDIMSGQTDVDHPLCEEC NVTENECQNYKRCLEILEQM+EDDS
Sbjct: 121 FDIMSGQTDVDHPLCEECTDTLLDQLDTQLNVTENECQNYKRCLEILEQMNEDDSEQLQR 180
Query: 695 XXXXXXXXXXXXXXXXXXXXKNRIIVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLE 874
KNR +VAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLE
Sbjct: 181 ELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLE 240
Query: 875 LDDELKSVENQMRYAQMQLEQTEKTNV 955
LDDELKSVENQ+RYAQ+QL++ +KTNV
Sbjct: 241 LDDELKSVENQVRYAQIQLDKLKKTNV 267
>ref|XP_129608.3| PREDICTED: beclin-1-like protein 1-like [Mus musculus].
Length = 442
Score = 82.4 bits (202), Expect = 5e-16
Identities = 79/282 (28%), Positives = 112/282 (39%), Gaps = 29/282 (10%)
Frame = +2
Query: 197 FVCQRCSQPLKLDTSFKILDRVTIQELTAPLLATAQVKPGETQEEEANPGEEPFIETRQD 376
F+CQRC +PLKL +Q+ PL E Q P E P Q
Sbjct: 6 FLCQRCKEPLKL-----------LQQQGGPL---------EVQHHANTPTEIPVSAESQV 45
Query: 377 GVSRR----------------FI------PPARMMSTESANS---FTLIGEASDGGTMEN 481
S R F P + +T N+ FTL+GE++ TM
Sbjct: 46 RTSGRPHSDGGRVSQGSALCTFTLLTSGGPDSEGGTTSQGNACCTFTLLGESASMRTMNT 105
Query: 482 LSRRLKVTGDLFDIMSGQTDVDHPLCEECXXXXXXXXXXXXNVTENECQNYK----RCLE 649
+ + T F+I+S Q VDHPLC +C + ++ Q YK R L
Sbjct: 106 IQNTVLET---FEILSDQKVVDHPLCVDCTDHLLMQLDDQLALLASDNQKYKSFQDRELL 162
Query: 650 ILEQMHEDDSXXXXXXXXXXXXXXXXXXXXXXXXXKNRIIVAENLEKVQAEAERLDQEEA 829
+ E+ E + VA L QAE++ L ++
Sbjct: 163 VSEEEREALHAELCAELSSLEQEEARLTQELEDLDGHHARVAAELRAAQAESKELYKQHE 222
Query: 830 QYQREYSEFKRQQLELDDELKSVENQMRYAQMQLEQTEKTNV 955
Q++ EYS FK +QLEL D+L SVENQ+ YA Q + +TN+
Sbjct: 223 QHRVEYSVFKMEQLELMDQLSSVENQLTYALSQQYRLRQTNI 264
>ref|XP_001473200.2| PREDICTED: beclin-1-like protein 1-like [Mus musculus].
Length = 442
Score = 82.4 bits (202), Expect = 5e-16
Identities = 79/282 (28%), Positives = 112/282 (39%), Gaps = 29/282 (10%)
Frame = +2
Query: 197 FVCQRCSQPLKLDTSFKILDRVTIQELTAPLLATAQVKPGETQEEEANPGEEPFIETRQD 376
F+CQRC +PLKL +Q+ PL E Q P E P Q
Sbjct: 6 FLCQRCKEPLKL-----------LQQQGGPL---------EVQHHANTPTEIPVSAESQV 45
Query: 377 GVSRR----------------FI------PPARMMSTESANS---FTLIGEASDGGTMEN 481
S R F P + +T N+ FTL+GE++ TM
Sbjct: 46 RTSGRPHSDGGRVSQGSALCTFTLLTSGGPDSEGGTTSQGNACCTFTLLGESASMRTMNT 105
Query: 482 LSRRLKVTGDLFDIMSGQTDVDHPLCEECXXXXXXXXXXXXNVTENECQNYK----RCLE 649
+ + T F+I+S Q VDHPLC +C + ++ Q YK R L
Sbjct: 106 IQNTVLET---FEILSDQKVVDHPLCVDCTDHLLMQLDDQLALLASDNQKYKSFQDRELL 162
Query: 650 ILEQMHEDDSXXXXXXXXXXXXXXXXXXXXXXXXXKNRIIVAENLEKVQAEAERLDQEEA 829
+ E+ E + VA L QAE++ L ++
Sbjct: 163 VSEEEREALHAELCAELSSLEQEEARLTQELEDLDGHHARVAAELRAAQAESKELYKQHE 222
Query: 830 QYQREYSEFKRQQLELDDELKSVENQMRYAQMQLEQTEKTNV 955
Q++ EYS FK +QLEL D+L SVENQ+ YA Q + +TN+
Sbjct: 223 QHRVEYSVFKMEQLELMDQLSSVENQLTYALSQQYRLRQTNI 264
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,985,519
Number of extensions: 702683
Number of successful extensions: 3304
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3282
Number of HSP's successfully gapped: 3
Length of query: 319
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 218
Effective length of database: 12,583,923
Effective search space: 2743295214
Effective search space used: 2743295214
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008451
(957 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003757.1| beclin-1 [Homo sapiens]. 410 e-114
>ref|NP_003757.1| beclin-1 [Homo sapiens].
Length = 450
Score = 410 bits (1053), Expect = e-114
Identities = 218/269 (81%), Positives = 223/269 (82%), Gaps = 2/269 (0%)
Frame = +2
Query: 155 MEGSKTSS-STMQVSFVCQRCSQPLKLDTSFKILDRVTIQELTAPLLATAQVKPGETQEE 331
MEGSKTS+ STMQVSFVCQRCSQPLKLDTSFKILDRVTIQELTAPLL TAQ KPGETQEE
Sbjct: 1 MEGSKTSNNSTMQVSFVCQRCSQPLKLDTSFKILDRVTIQELTAPLLTTAQAKPGETQEE 60
Query: 332 EANPGEEPFIET-RQDGVSRRFIPPARMMSTESANSFTLIGEASDGGTMENLSRRLKVTG 508
E N GEEPFIET RQDGVSRRFIPPARMMSTESANSFTLIGEASDGGTMENLSRRLKVTG
Sbjct: 61 ETNSGEEPFIETPRQDGVSRRFIPPARMMSTESANSFTLIGEASDGGTMENLSRRLKVTG 120
Query: 509 DLFDIMSGQTDVDHPLCEECXXXXXXXXXXXXNVTENECQNYKRCLEILEQMHEDDSXXX 688
DLFDIMSGQTDVDHPLCEEC NVTENECQNYKRCLEILEQM+EDDS
Sbjct: 121 DLFDIMSGQTDVDHPLCEECTDTLLDQLDTQLNVTENECQNYKRCLEILEQMNEDDSEQL 180
Query: 689 XXXXXXXXXXXXXXXXXXXXXXKNRIIVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQ 868
KNR IVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQ
Sbjct: 181 QMELKELALEEERLIQELEDVEKNRKIVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQ 240
Query: 869 LELDDELKSVENQMRYAQMQLEQTEKTNV 955
LELDDELKSVENQMRYAQ QL++ +KTNV
Sbjct: 241 LELDDELKSVENQMRYAQTQLDKLKKTNV 269
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,256,163
Number of extensions: 852787
Number of successful extensions: 3992
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3967
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 216
Effective length of database: 14,901,872
Effective search space: 3218804352
Effective search space used: 3218804352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008451
(957 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 391 e-106
Sscrofa_Chr16 88 1e-14
>Sscrofa_Chr12
|| Length = 63588571
Score = 391 bits (197), Expect = e-106
Identities = 197/197 (100%)
Strand = Plus / Plus
Query: 637 acgctgtttggagatcttagagcaaatgcatgaagatgacagcgaacagctccggatgga 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20263069 acgctgtttggagatcttagagcaaatgcatgaagatgacagcgaacagctccggatgga 20263128
Query: 697 gctaagggagctggcattagaggaagagaggctgatccaggagttggaagaggtggaaaa 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20263129 gctaagggagctggcattagaggaagagaggctgatccaggagttggaagaggtggaaaa 20263188
Query: 757 gaaccgtattatagtggcagaaaatctcgagaaggtccaggccgaggctgagaggttgga 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20263189 gaaccgtattatagtggcagaaaatctcgagaaggtccaggccgaggctgagaggttgga 20263248
Query: 817 tcaggaggaagctcagt 833
|||||||||||||||||
Sbjct: 20263249 tcaggaggaagctcagt 20263265
Score = 295 bits (149), Expect = 2e-77
Identities = 152/153 (99%)
Strand = Plus / Plus
Query: 1 catccggtcccgacggaagtcctccgctggccgaccgggaagtaggtgaaggctaggcga 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20256882 catccggtccctacggaagtcctccgctggccgaccgggaagtaggtgaaggctaggcga 20256941
Query: 61 tggcaattttggaggccctggtcccgggtagacccacggccacgatgcccccgcggtaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20256942 tggcaattttggaggccctggtcccgggtagacccacggccacgatgcccccgcggtaga 20257001
Query: 121 ccggaccagggtagcgggctccgggtcccgagg 153
|||||||||||||||||||||||||||||||||
Sbjct: 20257002 ccggaccagggtagcgggctccgggtcccgagg 20257034
Score = 276 bits (139), Expect = 2e-71
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 498 aggtcactggggatctttttgacatcatgtcaggccagacagatgtggatcacccgctgt 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20262770 aggtcactggggatctttttgacatcatgtcaggccagacagatgtggatcacccgctgt 20262829
Query: 558 gtgaggaatgcacagatactcttttagaccagctggacactcagctcaatgtcactgaaa 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20262830 gtgaggaatgcacagatactcttttagaccagctggacactcagctcaatgtcactgaaa 20262889
Query: 618 atgagtgtcagaactacaa 636
|||||||||||||||||||
Sbjct: 20262890 atgagtgtcagaactacaa 20262908
Score = 260 bits (131), Expect = 1e-66
Identities = 131/131 (100%)
Strand = Plus / Plus
Query: 151 agggatggaggggtctaagacatccagcagcaccatgcaggtgagcttcgtgtgtcagcg 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20257303 agggatggaggggtctaagacatccagcagcaccatgcaggtgagcttcgtgtgtcagcg 20257362
Query: 211 ctgcagccagcccctgaaactggacacgagcttcaagatcctggatcgtgttaccattca 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20257363 ctgcagccagcccctgaaactggacacgagcttcaagatcctggatcgtgttaccattca 20257422
Query: 271 ggagcttacag 281
|||||||||||
Sbjct: 20257423 ggagcttacag 20257433
Score = 220 bits (111), Expect = 1e-54
Identities = 125/127 (98%), Gaps = 2/127 (1%)
Strand = Plus / Plus
Query: 832 gtatcaaagggaatacagtgaatttaaacggcaacagctggagctggatgatgagctgaa 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20264586 gtatcaaagggaatacagtgaatttaaacggcaacagctggagctggatgatgagctgaa 20264645
Query: 892 gagtgtggaaaaccagatgcgttatgcccagatgcagctggaacaaactgaa-aaaacca 950
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 20264646 gagtgtggaaaaccagatgcgttatgcccagatgcagctgg-acaaactgaagaaaacca 20264704
Query: 951 acgtctt 957
|||||||
Sbjct: 20264705 acgtctt 20264711
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 406 caggatgatgtctacagaaagtgccaacagcttcactctgatcggggaggcatccgatgg 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20262573 caggatgatgtctacagaaagtgccaacagcttcactctgatcggggaggcatccgatgg 20262632
Query: 466 tggcaccatggagaacctcagccgaagactgaagg 500
|||||||||||||||||||||||||||||||||||
Sbjct: 20262633 tggcaccatggagaacctcagccgaagactgaagg 20262667
Score = 141 bits (71), Expect = 8e-31
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 280 agctccattacttgccacagcccaggtgaaaccaggagagacccaggaggaagaggctaa 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20260352 agctccattacttgccacagcccaggtgaaaccaggagagacccaggaggaagaggctaa 20260411
Query: 340 tccaggagagg 350
|||||||||||
Sbjct: 20260412 tccaggagagg 20260422
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 348 aggagccatttattgaaactcgccaggatggtgtctctcgcagattcatccccccagcca 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20261857 aggagccatttattgaaactcgccaggatggtgtctctcgcagattcatccccccagcca 20261916
Query: 408 gg 409
||
Sbjct: 20261917 gg 20261918
>Sscrofa_Chr16
|| Length = 86898991
Score = 87.7 bits (44), Expect = 1e-14
Identities = 103/120 (85%), Gaps = 2/120 (1%)
Strand = Plus / Plus
Query: 136 gggctccgggtcccgagggatggaggggtctaagacatccagcagcaccatgcaggtgag 195
||||||| ||||| || ||||||||| |||||||||| |||||||||| | |||||||
Sbjct: 44501188 gggctccaggtcctgaaggatggaggc-tctaagacatacagcagcaccgagaaggtgag 44501246
Query: 196 cttcgtgtgtcagcgctgcagccagcccctgaaactggacacgagcttcaagatcctgga 255
||| ||||| |||| ||||||||||||||| |||| |||| |||||||||||| |||||
Sbjct: 44501247 ctttgtgtgccagcactgcagccagcccct-aaacaagacatgagcttcaagattctgga 44501305
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,399,758
Number of extensions: 126
Number of successful extensions: 126
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 9
Length of query: 957
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 936
Effective length of database: 2,808,413,156
Effective search space: 2628674714016
Effective search space used: 2628674714016
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)