Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008453
(1454 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001179140.1| zinc finger protein 395 [Bos taurus]. 586 e-167
Alignment gi|XP_002689521.1| PREDICTED: zinc finger protein 395-like [Bos... 557 e-158
Alignment gi|NP_001192682.1| zinc finger protein 704 [Bos taurus]. 120 3e-27
Alignment gi|XP_002692758.1| PREDICTED: zinc finger protein 704-like [Bos... 120 3e-27
Alignment gi|XP_002692290.1| PREDICTED: zinc finger protein 704-like [Bos... 80 6e-15
Alignment gi|XP_001787503.1| PREDICTED: zinc finger protein 704-like [Bos... 80 6e-15
>ref|NP_001179140.1| zinc finger protein 395 [Bos taurus].
Length = 518
Score = 586 bits (1511), Expect = e-167
Identities = 304/439 (69%), Positives = 311/439 (70%), Gaps = 1/439 (0%)
Frame = +2
Query: 35 MEKKALKQRQMERKGNSMASVXXXXXXXXXXXXXXVLGPLGAVPPLEPQAELLEGAAPQP 214
MEKK LKQR+MERKGNSMASV VLGP GA PP EPQAELLEGAAPQP
Sbjct: 1 MEKKTLKQRKMERKGNSMASVLSRRLGKRSLLGARVLGPPGAAPPSEPQAELLEGAAPQP 60
Query: 215 FLASKDTSCQEQPKEVLKAPDTAGPQPVAFQPGQKVCVWYGGQECPGMVEQHSWAEDKVT 394
F+ASKD SCQEQPKEVLKAP T+G Q VAF PGQKVCVWYGGQE G+VEQHSWAEDKVT
Sbjct: 61 FVASKDASCQEQPKEVLKAPGTSGLQLVAFHPGQKVCVWYGGQESTGLVEQHSWAEDKVT 120
Query: 395 VWLLDQKLQICCKAEEVWLAXXXXXXXXXXXXXXXXXXXXYRPVSRNIDVPKRKSXXXXX 574
VWLLDQK QICCKAEEVWLA YRPVSRNIDVPKRKS
Sbjct: 121 VWLLDQKSQICCKAEEVWLAEPPGRIPQVPPPEQGTQAPAYRPVSRNIDVPKRKSDAVEM 180
Query: 575 XXXXXXXXLTSLSCSPVVQSPPGVEANFSASRAACDPWKEXXXXXXXXXXXXXXXXXXXX 754
LTSLSCSPVVQSPPG EANFSASR ACDPWKE
Sbjct: 181 DEMMAAMVLTSLSCSPVVQSPPGAEANFSASRTACDPWKESGDVSDSGSSTTSGHWSGSS 240
Query: 755 XXXXXXXXXXQASPKYLGDAFGSPQTDHGFETDPDAFLLDEPAPRKRKNSVKVMYKCLWP 934
QASPKYLGDAFGSPQTD+GFETDPDAFLLDEPAPRKRKNSVKVMYKCLWP
Sbjct: 241 GVSTPSPPHPQASPKYLGDAFGSPQTDNGFETDPDAFLLDEPAPRKRKNSVKVMYKCLWP 300
Query: 935 NCGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDFYYTEVQMKEEXXXXXXXXXXXXXT 1114
+CGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDFYYTEVQMK E T
Sbjct: 301 SCGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDFYYTEVQMKGEAAAAGVPTADSAPT 360
Query: 1115 PGVT-XXXXXXXXXXXXXXXXXXXDHPGLESYLPSGALSKSAPGSFWHIQADHAYQALPS 1291
P +T DHPGLESYLPSGALSKSAPGSFWHIQADHAYQALP
Sbjct: 361 PSMTSPPLTILPPPPPPKAQSSGPDHPGLESYLPSGALSKSAPGSFWHIQADHAYQALPP 420
Query: 1292 FQIPVSPHIYTSISWATAP 1348
FQIPVSPHIYTSISWA AP
Sbjct: 421 FQIPVSPHIYTSISWAAAP 439
>ref|XP_002689521.1| PREDICTED: zinc finger protein 395-like [Bos taurus].
Length = 501
Score = 557 bits (1435), Expect = e-158
Identities = 289/422 (68%), Positives = 295/422 (69%), Gaps = 1/422 (0%)
Frame = +2
Query: 86 MASVXXXXXXXXXXXXXXVLGPLGAVPPLEPQAELLEGAAPQPFLASKDTSCQEQPKEVL 265
MASV VLGP GA PP EPQAELLEGAAPQPF+ASKD SCQEQPKEVL
Sbjct: 1 MASVLSRRLGKRSLLGARVLGPPGAAPPSEPQAELLEGAAPQPFVASKDASCQEQPKEVL 60
Query: 266 KAPDTAGPQPVAFQPGQKVCVWYGGQECPGMVEQHSWAEDKVTVWLLDQKLQICCKAEEV 445
KAP T+G Q VAF PGQKVCVWYGGQE G+VEQHSWAEDKVTVWLLDQK QICCKAEEV
Sbjct: 61 KAPGTSGLQLVAFHPGQKVCVWYGGQESTGLVEQHSWAEDKVTVWLLDQKSQICCKAEEV 120
Query: 446 WLAXXXXXXXXXXXXXXXXXXXXYRPVSRNIDVPKRKSXXXXXXXXXXXXXLTSLSCSPV 625
WLA YRPVSRNIDVPKRKS LTSLSCSPV
Sbjct: 121 WLAEPPGRIPQVPPPEQGTQAPAYRPVSRNIDVPKRKSDAVEMDEMMAAMVLTSLSCSPV 180
Query: 626 VQSPPGVEANFSASRAACDPWKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQASPKYL 805
VQSPPG EANFSASR ACDPWKE QASPKYL
Sbjct: 181 VQSPPGAEANFSASRTACDPWKESGDVSDSGSSTTSGHWSGSSGVSTPSPPHPQASPKYL 240
Query: 806 GDAFGSPQTDHGFETDPDAFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGIKRHVK 985
GDAFGSPQTD+GFETDPDAFLLDEPAPRKRKNSVKVMYKCLWP+CGKVLRSIVGIKRHVK
Sbjct: 241 GDAFGSPQTDNGFETDPDAFLLDEPAPRKRKNSVKVMYKCLWPSCGKVLRSIVGIKRHVK 300
Query: 986 ALHLGDTVDSDQFKREEDFYYTEVQMKEEXXXXXXXXXXXXXTPGVT-XXXXXXXXXXXX 1162
ALHLGDTVDSDQFKREEDFYYTEVQMK E TP +T
Sbjct: 301 ALHLGDTVDSDQFKREEDFYYTEVQMKGEAAAAGVPTADSAPTPSMTSPPLTILPPPPPP 360
Query: 1163 XXXXXXXDHPGLESYLPSGALSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYTSISWAT 1342
DHPGLESYLPSGALSKSAPGSFWHIQADHAYQALP FQIPVSPHIYTSISWA
Sbjct: 361 KAQSSGPDHPGLESYLPSGALSKSAPGSFWHIQADHAYQALPPFQIPVSPHIYTSISWAA 420
Query: 1343 AP 1348
AP
Sbjct: 421 AP 422
>ref|NP_001192682.1| zinc finger protein 704 [Bos taurus].
Length = 413
Score = 120 bits (301), Expect = 3e-27
Identities = 96/288 (33%), Positives = 125/288 (43%), Gaps = 12/288 (4%)
Frame = +2
Query: 524 VSRNIDVPK-RKSXXXXXXXXXXXXX-LTSLSCSPVVQSPPGVEANFSASRAACDPWKEX 697
VS NIDVP RKS LTSLS SP+V+SPP V N S + WKE
Sbjct: 64 VSSNIDVPPARKSLEELDMDKVTAAMVLTSLSTSPLVRSPP-VRQNEGLSGS----WKEG 118
Query: 698 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXQASPKYLGDAFG-----SPQTDHGFETDPDA 862
SP D+F +P D E +
Sbjct: 119 GGVPSSTSSSGYWSWSAPSDQSNPSTP----SPPLSADSFKPFRSPAPPDDGIDEAEAGN 174
Query: 863 FLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDF 1042
L DEP PRKRKNS+KVM+KCLW NCGKVL + VGI++H++ +HLG +SD EEDF
Sbjct: 175 LLFDEPIPRKRKNSMKVMFKCLWKNCGKVLSTAVGIQKHIRTIHLGRVGESDYSDGEEDF 234
Query: 1043 YYTEVQMKEEXXXXXXXXXXXXXTPGVTXXXXXXXXXXXXXXXXXXXDHPGLESYLPSGA 1222
YYTE+++ + +P + + P
Sbjct: 235 YYTEIKLNTD-SVADGLSSLAPVSPSQSLASPPTFPIPDSSRTETPCAKTETKLMTP--- 290
Query: 1223 LSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYT-----SISWATAPL 1351
LS+SAP + + + DHAYQA P IP + SISW + P+
Sbjct: 291 LSRSAPTTLYLVHTDHAYQATPPVTIPGAAKFTPNGSSFSISWQSPPV 338
>ref|XP_002692758.1| PREDICTED: zinc finger protein 704-like [Bos taurus].
Length = 413
Score = 120 bits (301), Expect = 3e-27
Identities = 96/288 (33%), Positives = 125/288 (43%), Gaps = 12/288 (4%)
Frame = +2
Query: 524 VSRNIDVPK-RKSXXXXXXXXXXXXX-LTSLSCSPVVQSPPGVEANFSASRAACDPWKEX 697
VS NIDVP RKS LTSLS SP+V+SPP V N S + WKE
Sbjct: 64 VSSNIDVPPARKSLEELDMDKVTAAMVLTSLSTSPLVRSPP-VRQNEGLSGS----WKEG 118
Query: 698 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXQASPKYLGDAFG-----SPQTDHGFETDPDA 862
SP D+F +P D E +
Sbjct: 119 GGVPSSTSSSGYWSWSAPSDQSNPSTP----SPPLSADSFKPFRSPAPPDDGIDEAEAGN 174
Query: 863 FLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDF 1042
L DEP PRKRKNS+KVM+KCLW NCGKVL + VGI++H++ +HLG +SD EEDF
Sbjct: 175 LLFDEPIPRKRKNSMKVMFKCLWKNCGKVLSTAVGIQKHIRTIHLGRVGESDYSDGEEDF 234
Query: 1043 YYTEVQMKEEXXXXXXXXXXXXXTPGVTXXXXXXXXXXXXXXXXXXXDHPGLESYLPSGA 1222
YYTE+++ + +P + + P
Sbjct: 235 YYTEIKLNTD-SVADGLSSLAPVSPSQSLASPPTFPIPDSSRTETPCAKTETKLMTP--- 290
Query: 1223 LSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYT-----SISWATAPL 1351
LS+SAP + + + DHAYQA P IP + SISW + P+
Sbjct: 291 LSRSAPTTLYLVHTDHAYQATPPVTIPGAAKFTPNGSSFSISWQSPPV 338
>ref|XP_002692290.1| PREDICTED: zinc finger protein 704-like [Bos taurus].
Length = 289
Score = 79.7 bits (195), Expect = 6e-15
Identities = 53/153 (34%), Positives = 74/153 (48%)
Frame = +2
Query: 599 LTSLSCSPVVQSPPGVEANFSASRAACDPWKEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 778
LTSLS SP++ PGV FS + +PW+E
Sbjct: 6 LTSLSTSPLLLGAPGV--TFS-TEPCLEPWREAPVQPPGSGGGWDPASD----------- 51
Query: 779 XXQASPKYLGDAFGSPQTDHGFETDPDAFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRS 958
Q+SP P+ H FL E A RKRK+S++ +++CLW CGKVL S
Sbjct: 52 --QSSPSTPSPPL-PPEAAH--------FLFGESALRKRKSSLQGLFQCLWKRCGKVLSS 100
Query: 959 IVGIKRHVKALHLGDTVDSDQFKREEDFYYTEV 1057
G++RH++ +HLG + +Q EEDFYYTE+
Sbjct: 101 ASGMQRHIRLVHLGRQAELEQSDGEEDFYYTEL 133
>ref|XP_001787503.1| PREDICTED: zinc finger protein 704-like [Bos taurus].
Length = 289
Score = 79.7 bits (195), Expect = 6e-15
Identities = 53/153 (34%), Positives = 74/153 (48%)
Frame = +2
Query: 599 LTSLSCSPVVQSPPGVEANFSASRAACDPWKEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 778
LTSLS SP++ PGV FS + +PW+E
Sbjct: 6 LTSLSTSPLLLGAPGV--TFS-TEPCLEPWREAPVQPPGSGGGWDPASD----------- 51
Query: 779 XXQASPKYLGDAFGSPQTDHGFETDPDAFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRS 958
Q+SP P+ H FL E A RKRK+S++ +++CLW CGKVL S
Sbjct: 52 --QSSPSTPSPPL-PPEAAH--------FLFGESALRKRKSSLQGLFQCLWKRCGKVLSS 100
Query: 959 IVGIKRHVKALHLGDTVDSDQFKREEDFYYTEV 1057
G++RH++ +HLG + +Q EEDFYYTE+
Sbjct: 101 ASGMQRHIRLVHLGRQAELEQSDGEEDFYYTEL 133
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 57,916,370
Number of extensions: 1718413
Number of successful extensions: 9927
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 9752
Number of HSP's successfully gapped: 8
Length of query: 484
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 378
Effective length of database: 14,174,046
Effective search space: 5357789388
Effective search space used: 5357789388
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008453
(1454 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543220.2| PREDICTED: similar to zinc finger protein 395 [... 565 e-161
Alignment gi|XP_853536.1| PREDICTED: similar to glucocorticoid induced ge... 112 7e-25
Alignment gi|XP_543104.2| PREDICTED: similar to SLC2A4 regulator [Canis f... 87 3e-17
>ref|XP_543220.2| PREDICTED: similar to zinc finger protein 395 [Canis familiaris].
Length = 500
Score = 565 bits (1455), Expect = e-161
Identities = 290/421 (68%), Positives = 296/421 (70%)
Frame = +2
Query: 86 MASVXXXXXXXXXXXXXXVLGPLGAVPPLEPQAELLEGAAPQPFLASKDTSCQEQPKEVL 265
MASV VLGP GA PP EPQ ELLEGAAPQ FLASKD SCQEQPKE+L
Sbjct: 1 MASVLSRRLGKRSLLGARVLGPPGAAPPSEPQTELLEGAAPQSFLASKDISCQEQPKEIL 60
Query: 266 KAPDTAGPQPVAFQPGQKVCVWYGGQECPGMVEQHSWAEDKVTVWLLDQKLQICCKAEEV 445
KAP T+G Q V FQPGQKV VWYGGQEC G+VEQH WAEDKV VWLLDQKLQICCKAEEV
Sbjct: 61 KAPGTSGLQQVIFQPGQKVYVWYGGQECTGLVEQHRWAEDKVMVWLLDQKLQICCKAEEV 120
Query: 446 WLAXXXXXXXXXXXXXXXXXXXXYRPVSRNIDVPKRKSXXXXXXXXXXXXXLTSLSCSPV 625
WLA YRPVSRNIDVPKRKS LTSLSCSPV
Sbjct: 121 WLAELQGPIPQAPPLEQGTQTPAYRPVSRNIDVPKRKSDAVEMDEMMAAMVLTSLSCSPV 180
Query: 626 VQSPPGVEANFSASRAACDPWKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQASPKYL 805
VQSPPG EANFSASRAACDPWKE QASPKYL
Sbjct: 181 VQSPPGAEANFSASRAACDPWKESGDVSDSGSSTTSGHWSASSGISTPSPPHPQASPKYL 240
Query: 806 GDAFGSPQTDHGFETDPDAFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGIKRHVK 985
GDAFGSPQTD+GFETDPDAFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGIKRHVK
Sbjct: 241 GDAFGSPQTDNGFETDPDAFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGIKRHVK 300
Query: 986 ALHLGDTVDSDQFKREEDFYYTEVQMKEEXXXXXXXXXXXXXTPGVTXXXXXXXXXXXXX 1165
ALHLGDTVDSDQFKREEDFYYTEVQMKEE TPG+T
Sbjct: 301 ALHLGDTVDSDQFKREEDFYYTEVQMKEEAAAAGTPAADPAPTPGMTSPPLALLPPPPPK 360
Query: 1166 XXXXXXDHPGLESYLPSGALSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYTSISWATA 1345
+HPGLESYLPSGALSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYTSISWA A
Sbjct: 361 TQSSGPEHPGLESYLPSGALSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYTSISWAAA 420
Query: 1346 P 1348
P
Sbjct: 421 P 421
>ref|XP_853536.1| PREDICTED: similar to glucocorticoid induced gene 1 [Canis
familiaris].
Length = 429
Score = 112 bits (281), Expect = 7e-25
Identities = 67/182 (36%), Positives = 89/182 (48%), Gaps = 6/182 (3%)
Frame = +2
Query: 824 PQTDHGF-ETDPDAFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGIKRHVKALHLG 1000
P D G E + L DEP PRKRKNS+KVM+KCLW NCGKVL + GI++H++ +HLG
Sbjct: 177 PPADDGIDEAEASNLLFDEPIPRKRKNSMKVMFKCLWKNCGKVLSTAAGIQKHIRTIHLG 236
Query: 1001 DTVDSDQFKREEDFYYTEVQMKEEXXXXXXXXXXXXXTPGVTXXXXXXXXXXXXXXXXXX 1180
DSD EEDFYYTE+++ + +P +
Sbjct: 237 RVGDSDYSDGEEDFYYTEIKLNTD-SVADGLSSLAPVSPSQSLASPPTFPIPDSSRTETP 295
Query: 1181 XDHPGLESYLPSGALSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYT-----SISWATA 1345
+ P LS+SAP + + + DHAYQA P IP S SISW +
Sbjct: 296 CAKTETKLMTP---LSRSAPTTLYLVHTDHAYQATPPVTIPGSAKFTPNGSSFSISWQSP 352
Query: 1346 PL 1351
P+
Sbjct: 353 PV 354
>ref|XP_543104.2| PREDICTED: similar to SLC2A4 regulator [Canis familiaris].
Length = 652
Score = 87.4 bits (215), Expect = 3e-17
Identities = 54/155 (34%), Positives = 75/155 (48%)
Frame = +2
Query: 599 LTSLSCSPVVQSPPGVEANFSASRAACDPWKEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 778
LTSLS SP++ P + +PWKE
Sbjct: 386 LTSLSTSPLLLGAPAAACS---PEPGLEPWKETLARPLGSCSSSSGDWGWDLASD----- 437
Query: 779 XXQASPKYLGDAFGSPQTDHGFETDPDAFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRS 958
Q+SP S +T H FL EPAPRKRK+SV+V+++CLW CGKVL +
Sbjct: 438 --QSSPSTPSPPLPS-ETAH--------FLFGEPAPRKRKSSVQVLFQCLWKRCGKVLST 486
Query: 959 IVGIKRHVKALHLGDTVDSDQFKREEDFYYTEVQM 1063
G++RH++ +HLG + +Q EEDFYYTE+ +
Sbjct: 487 ASGMQRHIRLVHLGRQAEPEQSDGEEDFYYTELDV 521
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 60,243,209
Number of extensions: 1768455
Number of successful extensions: 10184
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9983
Number of HSP's successfully gapped: 3
Length of query: 484
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 377
Effective length of database: 15,307,552
Effective search space: 5770947104
Effective search space used: 5770947104
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008453
(1454 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003132868.1| PREDICTED: zinc finger protein 395 isoform 1... 639 0.0
Alignment gi|XP_003132869.1| PREDICTED: zinc finger protein 395 isoform 2... 609 e-174
Alignment gi|XP_001925562.3| PREDICTED: zinc finger protein 704 [Sus scro... 123 3e-28
>ref|XP_003132868.1| PREDICTED: zinc finger protein 395 isoform 1 [Sus scrofa].
Length = 517
Score = 639 bits (1649), Expect = 0.0
Identities = 326/438 (74%), Positives = 328/438 (74%)
Frame = +2
Query: 35 MEKKALKQRQMERKGNSMASVXXXXXXXXXXXXXXVLGPLGAVPPLEPQAELLEGAAPQP 214
MEKKALKQRQMERKG+SMASV VLGP GAVPPLEPQAELLEGAAPQP
Sbjct: 1 MEKKALKQRQMERKGSSMASVLSRRLGKRSLLGARVLGPPGAVPPLEPQAELLEGAAPQP 60
Query: 215 FLASKDTSCQEQPKEVLKAPDTAGPQPVAFQPGQKVCVWYGGQECPGMVEQHSWAEDKVT 394
FLASKDTSCQEQPKEVLKAPDTAGPQPVAFQPGQKVCVWYGGQECPGMVEQHSWAEDKVT
Sbjct: 61 FLASKDTSCQEQPKEVLKAPDTAGPQPVAFQPGQKVCVWYGGQECPGMVEQHSWAEDKVT 120
Query: 395 VWLLDQKLQICCKAEEVWLAXXXXXXXXXXXXXXXXXXXXYRPVSRNIDVPKRKSXXXXX 574
VWLLDQKLQICCKAEEVWLA YRPVSRNIDVPKRKS
Sbjct: 121 VWLLDQKLQICCKAEEVWLAELQGPIPQAPPPEPGTQAPAYRPVSRNIDVPKRKSDAVEM 180
Query: 575 XXXXXXXXLTSLSCSPVVQSPPGVEANFSASRAACDPWKEXXXXXXXXXXXXXXXXXXXX 754
LTSLSCSPVVQSPPGVEANFSASRAACDPWKE
Sbjct: 181 DEMMAAMVLTSLSCSPVVQSPPGVEANFSASRAACDPWKESGDVSDSGSSTTSGHWSGSS 240
Query: 755 XXXXXXXXXXQASPKYLGDAFGSPQTDHGFETDPDAFLLDEPAPRKRKNSVKVMYKCLWP 934
QASPKYLGDAFGSPQTDHGFETDPDAFLLDEPAPRKRKNSVKVMYKCLWP
Sbjct: 241 GVSTPSPPHPQASPKYLGDAFGSPQTDHGFETDPDAFLLDEPAPRKRKNSVKVMYKCLWP 300
Query: 935 NCGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDFYYTEVQMKEEXXXXXXXXXXXXXT 1114
NCGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDFYYTEVQMKEE T
Sbjct: 301 NCGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDFYYTEVQMKEEAAALGAPAADLAPT 360
Query: 1115 PGVTXXXXXXXXXXXXXXXXXXXDHPGLESYLPSGALSKSAPGSFWHIQADHAYQALPSF 1294
PG+T DHPGLESYLPSGALSKSAPGSFWHIQADHAYQALPSF
Sbjct: 361 PGMTSPPLAILPPPPPKAQPSGPDHPGLESYLPSGALSKSAPGSFWHIQADHAYQALPSF 420
Query: 1295 QIPVSPHIYTSISWATAP 1348
QIPVSPHIYTSISWATAP
Sbjct: 421 QIPVSPHIYTSISWATAP 438
>ref|XP_003132869.1| PREDICTED: zinc finger protein 395 isoform 2 [Sus scrofa].
Length = 500
Score = 609 bits (1570), Expect = e-174
Identities = 310/421 (73%), Positives = 311/421 (73%)
Frame = +2
Query: 86 MASVXXXXXXXXXXXXXXVLGPLGAVPPLEPQAELLEGAAPQPFLASKDTSCQEQPKEVL 265
MASV VLGP GAVPPLEPQAELLEGAAPQPFLASKDTSCQEQPKEVL
Sbjct: 1 MASVLSRRLGKRSLLGARVLGPPGAVPPLEPQAELLEGAAPQPFLASKDTSCQEQPKEVL 60
Query: 266 KAPDTAGPQPVAFQPGQKVCVWYGGQECPGMVEQHSWAEDKVTVWLLDQKLQICCKAEEV 445
KAPDTAGPQPVAFQPGQKVCVWYGGQECPGMVEQHSWAEDKVTVWLLDQKLQICCKAEEV
Sbjct: 61 KAPDTAGPQPVAFQPGQKVCVWYGGQECPGMVEQHSWAEDKVTVWLLDQKLQICCKAEEV 120
Query: 446 WLAXXXXXXXXXXXXXXXXXXXXYRPVSRNIDVPKRKSXXXXXXXXXXXXXLTSLSCSPV 625
WLA YRPVSRNIDVPKRKS LTSLSCSPV
Sbjct: 121 WLAELQGPIPQAPPPEPGTQAPAYRPVSRNIDVPKRKSDAVEMDEMMAAMVLTSLSCSPV 180
Query: 626 VQSPPGVEANFSASRAACDPWKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQASPKYL 805
VQSPPGVEANFSASRAACDPWKE QASPKYL
Sbjct: 181 VQSPPGVEANFSASRAACDPWKESGDVSDSGSSTTSGHWSGSSGVSTPSPPHPQASPKYL 240
Query: 806 GDAFGSPQTDHGFETDPDAFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGIKRHVK 985
GDAFGSPQTDHGFETDPDAFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGIKRHVK
Sbjct: 241 GDAFGSPQTDHGFETDPDAFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGIKRHVK 300
Query: 986 ALHLGDTVDSDQFKREEDFYYTEVQMKEEXXXXXXXXXXXXXTPGVTXXXXXXXXXXXXX 1165
ALHLGDTVDSDQFKREEDFYYTEVQMKEE TPG+T
Sbjct: 301 ALHLGDTVDSDQFKREEDFYYTEVQMKEEAAALGAPAADLAPTPGMTSPPLAILPPPPPK 360
Query: 1166 XXXXXXDHPGLESYLPSGALSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYTSISWATA 1345
DHPGLESYLPSGALSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYTSISWATA
Sbjct: 361 AQPSGPDHPGLESYLPSGALSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYTSISWATA 420
Query: 1346 P 1348
P
Sbjct: 421 P 421
>ref|XP_001925562.3| PREDICTED: zinc finger protein 704 [Sus scrofa].
Length = 413
Score = 123 bits (308), Expect = 3e-28
Identities = 98/289 (33%), Positives = 127/289 (43%), Gaps = 13/289 (4%)
Frame = +2
Query: 524 VSRNIDVP--KRKSXXXXXXXXXXXXXLTSLSCSPVVQSPPGVEANFSASRAACDPWKEX 697
VS NIDVP ++ S LTSLS SP+V+SPP V N S + WKE
Sbjct: 64 VSSNIDVPPARKSSEELDMDKVTAAMVLTSLSTSPLVRSPP-VRQNEGLSGS----WKEG 118
Query: 698 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXQASPKYLGDAFG---SPQ-TDHGF-ETDPDA 862
SP D+F SP TD G E +
Sbjct: 119 SGVPSSTSSSGYWSWSAPSDQSNPSTP----SPPLSADSFKPFRSPAPTDDGIDEAEASN 174
Query: 863 FLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDF 1042
L DEP PRKRKNS+KVM+KCLW NCGKVL + GI++H++ +HLG +SD EEDF
Sbjct: 175 LLFDEPIPRKRKNSMKVMFKCLWKNCGKVLSTAAGIQKHIRTIHLGRVGESDYSDGEEDF 234
Query: 1043 YYTEVQMKEEXXXXXXXXXXXXXTPGVTXXXXXXXXXXXXXXXXXXXDHPGLESYLP-SG 1219
YYTE+++ + V+ + P +S
Sbjct: 235 YYTEIKLNTDSVADGLSSLAP-----VSPSQSLASPPTFPVPDSSRIETPCAKSETKLMT 289
Query: 1220 ALSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYT-----SISWATAPL 1351
LS+SAP + + + DHAYQA P IP S SISW + P+
Sbjct: 290 PLSRSAPTTLYLVHTDHAYQATPPVTIPGSAKFTPNGSSFSISWQSPPV 338
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 37,452,587
Number of extensions: 1113838
Number of successful extensions: 6713
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6593
Number of HSP's successfully gapped: 4
Length of query: 484
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 381
Effective length of database: 8,779,541
Effective search space: 3345005121
Effective search space used: 3345005121
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008453
(1454 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_950194.2| zinc finger protein 395 [Mus musculus]. 488 e-138
Alignment gi|NP_573481.1| zinc finger protein 704 [Mus musculus]. 124 1e-28
>ref|NP_950194.2| zinc finger protein 395 [Mus musculus].
Length = 508
Score = 488 bits (1256), Expect = e-138
Identities = 264/408 (64%), Positives = 272/408 (66%), Gaps = 8/408 (1%)
Frame = +2
Query: 149 PLGAVPPLEPQAELLEGAAPQPFLASKDTSCQEQPKEVLKAPDTAGPQPVAFQPGQKVCV 328
P GA PLEPQ E+ EGA L SKD CQEQPKE+LKA T+G VAFQPGQKVCV
Sbjct: 25 PSGATLPLEPQIEVPEGAMSLSPLTSKDPVCQEQPKELLKALGTSGHPQVAFQPGQKVCV 84
Query: 329 WYGGQECPGMVEQHSWAEDKVTVWLLDQKLQICCKAEEVWLAXXXXXXXXXXXXXXXXXX 508
WYGGQEC G+VEQHSWAEDKVTV LLDQKLQI CK EEVWLA
Sbjct: 85 WYGGQECKGLVEQHSWAEDKVTVRLLDQKLQIRCKVEEVWLAELQGSASHVPALEPGAQV 144
Query: 509 XXYRPVSRNIDVPKRKSXXXXXXXXXXXXXLTSLSCSPVVQSPPGVEANFSASRAAC-DP 685
YRPVSRNIDVPKRKS LTSLSCSPVVQSPPG E FS SRAAC D
Sbjct: 145 PAYRPVSRNIDVPKRKSDAVEMDEMMAAMVLTSLSCSPVVQSPPGAEPIFSVSRAACGDL 204
Query: 686 WKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQASPKYLGDAFGSPQTDHGFETDPDAF 865
WKE QASPKYLGDAFGSPQTDHGFETDPD F
Sbjct: 205 WKESGDVSDSGSSGHWSGSSGSSTPSPPHP---QASPKYLGDAFGSPQTDHGFETDPDPF 261
Query: 866 LLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDFY 1045
LLDEPAPRKR+NSVKVMYKCLWP+CGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDFY
Sbjct: 262 LLDEPAPRKRRNSVKVMYKCLWPSCGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDFY 321
Query: 1046 YTEVQMKEEXXXXXXXXXXXXXTPG-------VTXXXXXXXXXXXXXXXXXXXDHPGLES 1204
YTE+QMKEE G VT +HPGLES
Sbjct: 322 YTEMQMKEESAQAVAAPPAPGTPMGEPASTSRVTSPSLAALSLPPAKVQSSGPEHPGLES 381
Query: 1205 YLPSGALSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYTSISWATAP 1348
LPS ALSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYTSISWA AP
Sbjct: 382 SLPSVALSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYTSISWAAAP 429
>ref|NP_573481.1| zinc finger protein 704 [Mus musculus].
Length = 566
Score = 124 bits (312), Expect = 1e-28
Identities = 99/298 (33%), Positives = 130/298 (43%), Gaps = 13/298 (4%)
Frame = +2
Query: 524 VSRNIDVP--KRKSXXXXXXXXXXXXXLTSLSCSPVVQSPPGVEANFSASRAACDPWKEX 697
VS NIDVP ++ S LTSLS SP+V+SPP V N S + WKE
Sbjct: 219 VSSNIDVPPARKSSEELDMDKVTAAMVLTSLSTSPLVRSPP-VRPNEGLSGS----WKEG 273
Query: 698 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXQASPKYLGDAFG-----SPQTDHGFETDPDA 862
SP D+F +P D E D
Sbjct: 274 APSSSSSSGYWSWSAPSDQSNPSTP------SPPLSADSFKPFRSPAPPDDGIDEADASN 327
Query: 863 FLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDF 1042
L DEP PRKRKNS+KVM+KCLW +CGKVL + GI++H++A+HLG +SD EEDF
Sbjct: 328 LLFDEPIPRKRKNSMKVMFKCLWKSCGKVLNTAAGIQKHIRAVHLGRVGESDCSDGEEDF 387
Query: 1043 YYTEVQMKEEXXXXXXXXXXXXXTPGVTXXXXXXXXXXXXXXXXXXXDHPGLESYLPSGA 1222
YYTE+++ + +P + + P
Sbjct: 388 YYTEIKLNTD-ATAEGLNTVAPVSPSQSLASAPAFPIPDSSRTETPCAKTDTKLVTP--- 443
Query: 1223 LSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYT-----SISWATAPLHGL-LPVSGP 1378
LS+SAP + + + DHAYQA P IP S SISW + P+ +PVS P
Sbjct: 444 LSRSAPTTLYLVHTDHAYQATPPVTIPGSAKFTPNGSSFSISWQSPPVTFTGVPVSPP 501
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 49,594,622
Number of extensions: 1414210
Number of successful extensions: 7690
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7576
Number of HSP's successfully gapped: 4
Length of query: 484
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 379
Effective length of database: 12,463,779
Effective search space: 4723772241
Effective search space used: 4723772241
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008453
(1454 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_061130.1| zinc finger protein 395 [Homo sapiens]. 524 e-148
Alignment gi|NP_001028895.1| zinc finger protein 704 [Homo sapiens]. 126 6e-29
Alignment gi|NP_064446.2| SLC2A4 regulator [Homo sapiens]. 78 2e-14
>ref|NP_061130.1| zinc finger protein 395 [Homo sapiens].
Length = 513
Score = 524 bits (1349), Expect = e-148
Identities = 277/437 (63%), Positives = 287/437 (65%), Gaps = 16/437 (3%)
Frame = +2
Query: 86 MASVXXXXXXXXXXXXXXVLGPLG-----AVPPLEPQAELLEGAAPQPFLASKDTSCQEQ 250
MASV VLGP A PP EP LLEGAAPQPF S DT CQEQ
Sbjct: 1 MASVLSRRLGKRSLLGARVLGPSASEGPSAAPPSEP---LLEGAAPQPFTTSDDTPCQEQ 57
Query: 251 PKEVLKAPDTAGPQPVAFQPGQKVCVWYGGQECPGMVEQHSWAEDKVTVWLLDQKLQICC 430
PKEVLKAP T+G Q VAFQPGQKV VWYGGQEC G+VEQHSW E +VTVWLL+QKLQ+CC
Sbjct: 58 PKEVLKAPSTSGLQQVAFQPGQKVYVWYGGQECTGLVEQHSWMEGQVTVWLLEQKLQVCC 117
Query: 431 KAEEVWLAXXXXXXXXXXXXXXXXXXXXYRPVSRNIDVPKRKSXXXXXXXXXXXXXLTSL 610
+ EEVWLA YRPVSRNIDVPKRKS LTSL
Sbjct: 118 RVEEVWLAELQGPCPQAPPLEPGAQALAYRPVSRNIDVPKRKSDAVEMDEMMAAMVLTSL 177
Query: 611 SCSPVVQSPPGVEANFSASRAACDPWKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQA 790
SCSPVVQSPPG EANFSASRAACDPWKE QA
Sbjct: 178 SCSPVVQSPPGTEANFSASRAACDPWKESGDISDSGSSTTSGHWSGSSGVSTPSPPHPQA 237
Query: 791 SPKYLGDAFGSPQTDHGFETDPDAFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGI 970
SPKYLGDAFGSPQTDHGFETDPD FLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGI
Sbjct: 238 SPKYLGDAFGSPQTDHGFETDPDPFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGI 297
Query: 971 KRHVKALHLGDTVDSDQFKREEDFYYTEVQMKEEXXXXXXXXXXXXXTPG---------- 1120
KRHVKALHLGDTVDSDQFKREEDFYYTEVQ+KEE PG
Sbjct: 298 KRHVKALHLGDTVDSDQFKREEDFYYTEVQLKEESAAAAAAAAAGTPVPGTPTSEPAPTP 357
Query: 1121 -VTXXXXXXXXXXXXXXXXXXXDHPGLESYLPSGALSKSAPGSFWHIQADHAYQALPSFQ 1297
+T +HPG ES LPSGALSKSAPGSFWHIQADHAYQALPSFQ
Sbjct: 358 SMTGLPLSALPPPLHKAQSSGPEHPGPESSLPSGALSKSAPGSFWHIQADHAYQALPSFQ 417
Query: 1298 IPVSPHIYTSISWATAP 1348
IPVSPHIYTS+SWA AP
Sbjct: 418 IPVSPHIYTSVSWAAAP 434
>ref|NP_001028895.1| zinc finger protein 704 [Homo sapiens].
Length = 412
Score = 126 bits (316), Expect = 6e-29
Identities = 99/288 (34%), Positives = 127/288 (44%), Gaps = 12/288 (4%)
Frame = +2
Query: 524 VSRNIDVP--KRKSXXXXXXXXXXXXXLTSLSCSPVVQSPPGVEANFSASRAACDPWKEX 697
VS NIDVP ++ S LTSLS SP+V+SPP V N S S + WKE
Sbjct: 64 VSSNIDVPPARKSSEELDMDKVTAAMVLTSLSTSPLVRSPP-VRPNESLSGS----WKEG 118
Query: 698 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXQASPKYLGDAFG---SP-QTDHGF-ETDPDA 862
SP D+F SP Q D G E +
Sbjct: 119 GCVPSSTSSSGYWSWSAPSDQSNPSTP----SPPLSADSFKPFRSPAQPDDGIDEAEASN 174
Query: 863 FLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDF 1042
L DEP PRKRKNS+KVM+KCLW NCGKVL + GI++H++ +HLG DSD EEDF
Sbjct: 175 LLFDEPIPRKRKNSMKVMFKCLWKNCGKVLSTAAGIQKHIRTIHLGRVGDSDYSDGEEDF 234
Query: 1043 YYTEVQMKEEXXXXXXXXXXXXXTPGVTXXXXXXXXXXXXXXXXXXXDHPGLESYLPSGA 1222
YYTE+++ + +P + + P
Sbjct: 235 YYTEIKLNTD-SVADGLSSLAPVSPSQSLASPPTFPIPDSSRTETPCAKTETKLMTP--- 290
Query: 1223 LSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYT-----SISWATAPL 1351
LS+SAP + + + DHAYQA P IP S SISW + P+
Sbjct: 291 LSRSAPTTLYLVHTDHAYQATPPVTIPGSAKFTPNGSSFSISWQSPPV 338
>ref|NP_064446.2| SLC2A4 regulator [Homo sapiens].
Length = 387
Score = 78.2 bits (191), Expect = 2e-14
Identities = 51/155 (32%), Positives = 70/155 (45%)
Frame = +2
Query: 599 LTSLSCSPVVQSPPGVEANFSASRAACDPWKEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 778
LTSLS SP++ P A FS +PWKE
Sbjct: 111 LTSLSTSPLLLGAP--VAAFSPE-PGLEPWKEALVRPPGSYSSSSNSGDWGWDLASDQSS 167
Query: 779 XXQASPKYLGDAFGSPQTDHGFETDPDAFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRS 958
SP P+ H FL EP RKRK+ +VM++CLW +CGKVL +
Sbjct: 168 PSTPSPPL------PPEAAH--------FLFGEPTLRKRKSPAQVMFQCLWKSCGKVLST 213
Query: 959 IVGIKRHVKALHLGDTVDSDQFKREEDFYYTEVQM 1063
++RH++ +HLG + +Q EEDFYYTE+ +
Sbjct: 214 ASAMQRHIRLVHLGRQAEPEQSDGEEDFYYTELDV 248
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 59,038,751
Number of extensions: 1719424
Number of successful extensions: 9690
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9554
Number of HSP's successfully gapped: 4
Length of query: 484
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 378
Effective length of database: 14,802,980
Effective search space: 5595526440
Effective search space used: 5595526440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008453
(1454 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 551 e-154
>Sscrofa_Chr14
|| Length = 153851969
Score = 551 bits (278), Expect = e-154
Identities = 281/282 (99%)
Strand = Plus / Minus
Query: 999 gggataccgtggactccgaccagttcaagcgggaggaggatttctactacacggaggtgc 1058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13297375 gggataccgtggactccgaccagttcaagcgggaggaggatttctactacacggaggtgc 13297316
Query: 1059 agatgaaggaggaagctgctgccttgggcgcccccgcagctgacctggctcccacccccg 1118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13297315 agatgaaggaggaagctgctgccttgggcgcccccgcagctgacctggctcccacccccg 13297256
Query: 1119 gcgtgaccagcccacccctcgccattctcccaccgcctcctcccaaagcccagccctcag 1178
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13297255 gcatgaccagcccacccctcgccattctcccaccgcctcctcccaaagcccagccctcag 13297196
Query: 1179 gcccagatcaccctggcctggagtcctacctgccctctggtgctctcagcaagtcagctc 1238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13297195 gcccagatcaccctggcctggagtcctacctgccctctggtgctctcagcaagtcagctc 13297136
Query: 1239 ctggctccttctggcacattcaggccgaccatgcataccagg 1280
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13297135 ctggctccttctggcacattcaggccgaccatgcataccagg 13297094
Score = 482 bits (243), Expect = e-133
Identities = 249/251 (99%)
Strand = Plus / Minus
Query: 71 aggaaaggcaacagcatggccagcgtgctgtcccggcgccttggcaagcggtccctcttg 130
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13308984 aggaaaggcagcagcatggccagcgtgctgtcccggcgccttggcaagcggtccctcttg 13308925
Query: 131 ggagcccgggtgttggggccacttggggctgtcccacccttggagccgcaggcagagctg 190
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 13308924 ggagcccgggtgttggggccacctggggctgtcccacccttggagccgcaggcagagctg 13308865
Query: 191 ctggagggggcggctccccagcccttccttgcctctaaggacacgtcctgccaggagcag 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13308864 ctggagggggcggctccccagcccttccttgcctctaaggacacgtcctgccaggagcag 13308805
Query: 251 cccaaggaagtgctcaaggctcctgacaccgcaggtcctcagccagtggcctttcagcct 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13308804 cccaaggaagtgctcaaggctcctgacaccgcaggtcctcagccagtggcctttcagcct 13308745
Query: 311 gggcagaaggt 321
|||||||||||
Sbjct: 13308744 gggcagaaggt 13308734
Score = 460 bits (232), Expect = e-126
Identities = 235/236 (99%)
Strand = Plus / Minus
Query: 318 aggtttgtgtgtggtatgggggtcaagaatgcccagggatggtggagcagcatagttggg 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13306947 aggtttgtgtgtggtatgggggtcaagaatgcccagggatggtggagcagcatagttggg 13306888
Query: 378 cagaggataaggtgactgtctggctgttggaccagaagttacaaatctgctgcaaagcgg 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13306887 cagaggataaggtgactgtctggctgttggaccagaagttacaaatctgctgcaaagcgg 13306828
Query: 438 aggaggtgtggctggctgagctgcagggccccatcccccaggcgccacctccagagcctg 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13306827 aggaggtgtggctggctgagctgcagggccccatcccccaggcgccacctccagagcctg 13306768
Query: 498 aaacccaggcaccagcctaccggcctgtctccaggaacattgacgtcccaaagagg 553
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13306767 gaacccaggcaccagcctaccggcctgtctccaggaacattgacgtcccaaagagg 13306712
Score = 345 bits (174), Expect = 4e-92
Identities = 216/237 (91%)
Strand = Plus / Minus
Query: 662 gcttcccgcgccgcctgtgacccgtggaaggagagtggcgacgtgtcagacagcggcagt 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13298809 gcttcccgcgccgcctgtgacccgtggaaggagagtggcgacgtgtcagacagcggcagt 13298750
Query: 722 agcaccaccagcgggcactggagcgggagcagcggtgtctccannnnnnnnnnnnnnnnn 781
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13298749 agcaccaccagcgggcactggagcgggagcagcggtgtctccaccccctcccctccccac 13298690
Query: 782 nnnnaggccagccccaagtatttgggggatgcctttggttctccgcaaactgatcatggt 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13298689 ccccaggccagccccaagtatttgggggatgcctttggttctccgcaaactgatcatggt 13298630
Query: 842 tttgagactgatccagatgctttcctgttggatgaaccagctccccgcaagagaaag 898
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13298629 tttgagactgatccagatgctttcctgttggatgaaccagctccccgcaagagaaag 13298573
Score = 222 bits (112), Expect = 4e-55
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 551 aggaagtcggatgccgtggaaatggacgagatgatggcggccatggtgctgacctccctg 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13304314 aggaagtcggatgccgtggaaatggacgagatgatggcggccatggtgctgacctccctg 13304255
Query: 611 tcctgcagccccgttgtgcagagtcctcccggggtcgaggccaacttctctg 662
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13304254 tcctgcagccccgttgtgcagagtcctcccggggtcgaggccaacttctctg 13304203
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 897 agaactcggtgaaggtgatgtacaagtgcctgtggcccaactgcggcaaagtcctgcgct 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13298168 agaactcggtgaaggtgatgtacaagtgcctgtggcccaactgcggcaaagtcctgcgct 13298109
Query: 957 ccatcgtgggcatcaagcgacacgtcaaagcccttcacctgggg 1000
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13298108 ccatcgtgggcatcaagcgacacgtcaaagcccttcacctgggg 13298065
Score = 180 bits (91), Expect = 1e-42
Identities = 98/99 (98%), Gaps = 1/99 (1%)
Strand = Plus / Minus
Query: 1277 caggccctgccatcctttcagatccccgtctcgccacacatctacaccagtattagctgg 1336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13295762 caggccctgccatcctttcagatccccgtctcgccacacatctacaccagtattagctgg 13295703
Query: 1337 gccactgcccccctccacggcctcctccctgtctccggt 1375
|||||||| ||||||||||||||||||||||||||||||
Sbjct: 13295702 gccactgc-cccctccacggcctcctccctgtctccggt 13295665
Score = 165 bits (83), Expect = 8e-38
Identities = 101/107 (94%)
Strand = Plus / Minus
Query: 400 gctgttggaccagaagttacaaatctgctgcaaagcggaggaggtgtggctggctgagct 459
||||||||| ||||||||||||||||||||||||| ||||||||| |||||||| |||||
Sbjct: 13304902 gctgttggagcagaagttacaaatctgctgcaaagtggaggaggtatggctggcggagct 13304843
Query: 460 gcagggccccatcccccaggcgccacctccagagcctgaaacccagg 506
|||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 13304842 gcagggccccatcccccaggcgccacctccagagccgggaacccagg 13304796
Score = 137 bits (69), Expect = 2e-29
Identities = 69/69 (100%)
Strand = Plus / Minus
Query: 5 aacgagagggaccgagtaaaatgtcataaaatggagaagaaagcattaaagcaaaggcaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13339312 aacgagagggaccgagtaaaatgtcataaaatggagaagaaagcattaaagcaaaggcaa 13339253
Query: 65 atggaaagg 73
|||||||||
Sbjct: 13339252 atggaaagg 13339244
Score = 133 bits (67), Expect = 3e-28
Identities = 77/79 (97%), Gaps = 1/79 (1%)
Strand = Plus / Minus
Query: 1373 ggtccggagccggtcgctaagcttcagcgagccccacccagccaccccctgccatgaaat 1432
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 13294402 ggtccggagccggtcgctaagcttcagcgagccccagc-agccaccccctgccatgaaat 13294344
Query: 1433 ctcacctgattgtcacttc 1451
|||||||||||||||||||
Sbjct: 13294343 ctcacctgattgtcacttc 13294325
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 39,775,910
Number of extensions: 321
Number of successful extensions: 321
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 11
Length of query: 1454
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1433
Effective length of database: 2,808,413,156
Effective search space: 4024456052548
Effective search space used: 4024456052548
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)