Animal-Genome cDNA 20110601C-008453


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008453
         (1454 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001179140.1| zinc finger protein 395 [Bos taurus].             586   e-167
Alignment   gi|XP_002689521.1| PREDICTED: zinc finger protein 395-like [Bos...   557   e-158
Alignment   gi|NP_001192682.1| zinc finger protein 704 [Bos taurus].             120   3e-27
Alignment   gi|XP_002692758.1| PREDICTED: zinc finger protein 704-like [Bos...   120   3e-27
Alignment   gi|XP_002692290.1| PREDICTED: zinc finger protein 704-like [Bos...    80   6e-15
Alignment   gi|XP_001787503.1| PREDICTED: zinc finger protein 704-like [Bos...    80   6e-15

>ref|NP_001179140.1| zinc finger protein 395 [Bos taurus].
          Length = 518

 Score =  586 bits (1511), Expect = e-167
 Identities = 304/439 (69%), Positives = 311/439 (70%), Gaps = 1/439 (0%)
 Frame = +2

Query: 35   MEKKALKQRQMERKGNSMASVXXXXXXXXXXXXXXVLGPLGAVPPLEPQAELLEGAAPQP 214
            MEKK LKQR+MERKGNSMASV              VLGP GA PP EPQAELLEGAAPQP
Sbjct: 1    MEKKTLKQRKMERKGNSMASVLSRRLGKRSLLGARVLGPPGAAPPSEPQAELLEGAAPQP 60

Query: 215  FLASKDTSCQEQPKEVLKAPDTAGPQPVAFQPGQKVCVWYGGQECPGMVEQHSWAEDKVT 394
            F+ASKD SCQEQPKEVLKAP T+G Q VAF PGQKVCVWYGGQE  G+VEQHSWAEDKVT
Sbjct: 61   FVASKDASCQEQPKEVLKAPGTSGLQLVAFHPGQKVCVWYGGQESTGLVEQHSWAEDKVT 120

Query: 395  VWLLDQKLQICCKAEEVWLAXXXXXXXXXXXXXXXXXXXXYRPVSRNIDVPKRKSXXXXX 574
            VWLLDQK QICCKAEEVWLA                    YRPVSRNIDVPKRKS     
Sbjct: 121  VWLLDQKSQICCKAEEVWLAEPPGRIPQVPPPEQGTQAPAYRPVSRNIDVPKRKSDAVEM 180

Query: 575  XXXXXXXXLTSLSCSPVVQSPPGVEANFSASRAACDPWKEXXXXXXXXXXXXXXXXXXXX 754
                    LTSLSCSPVVQSPPG EANFSASR ACDPWKE                    
Sbjct: 181  DEMMAAMVLTSLSCSPVVQSPPGAEANFSASRTACDPWKESGDVSDSGSSTTSGHWSGSS 240

Query: 755  XXXXXXXXXXQASPKYLGDAFGSPQTDHGFETDPDAFLLDEPAPRKRKNSVKVMYKCLWP 934
                      QASPKYLGDAFGSPQTD+GFETDPDAFLLDEPAPRKRKNSVKVMYKCLWP
Sbjct: 241  GVSTPSPPHPQASPKYLGDAFGSPQTDNGFETDPDAFLLDEPAPRKRKNSVKVMYKCLWP 300

Query: 935  NCGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDFYYTEVQMKEEXXXXXXXXXXXXXT 1114
            +CGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDFYYTEVQMK E             T
Sbjct: 301  SCGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDFYYTEVQMKGEAAAAGVPTADSAPT 360

Query: 1115 PGVT-XXXXXXXXXXXXXXXXXXXDHPGLESYLPSGALSKSAPGSFWHIQADHAYQALPS 1291
            P +T                    DHPGLESYLPSGALSKSAPGSFWHIQADHAYQALP 
Sbjct: 361  PSMTSPPLTILPPPPPPKAQSSGPDHPGLESYLPSGALSKSAPGSFWHIQADHAYQALPP 420

Query: 1292 FQIPVSPHIYTSISWATAP 1348
            FQIPVSPHIYTSISWA AP
Sbjct: 421  FQIPVSPHIYTSISWAAAP 439


>ref|XP_002689521.1| PREDICTED: zinc finger protein 395-like [Bos taurus].
          Length = 501

 Score =  557 bits (1435), Expect = e-158
 Identities = 289/422 (68%), Positives = 295/422 (69%), Gaps = 1/422 (0%)
 Frame = +2

Query: 86   MASVXXXXXXXXXXXXXXVLGPLGAVPPLEPQAELLEGAAPQPFLASKDTSCQEQPKEVL 265
            MASV              VLGP GA PP EPQAELLEGAAPQPF+ASKD SCQEQPKEVL
Sbjct: 1    MASVLSRRLGKRSLLGARVLGPPGAAPPSEPQAELLEGAAPQPFVASKDASCQEQPKEVL 60

Query: 266  KAPDTAGPQPVAFQPGQKVCVWYGGQECPGMVEQHSWAEDKVTVWLLDQKLQICCKAEEV 445
            KAP T+G Q VAF PGQKVCVWYGGQE  G+VEQHSWAEDKVTVWLLDQK QICCKAEEV
Sbjct: 61   KAPGTSGLQLVAFHPGQKVCVWYGGQESTGLVEQHSWAEDKVTVWLLDQKSQICCKAEEV 120

Query: 446  WLAXXXXXXXXXXXXXXXXXXXXYRPVSRNIDVPKRKSXXXXXXXXXXXXXLTSLSCSPV 625
            WLA                    YRPVSRNIDVPKRKS             LTSLSCSPV
Sbjct: 121  WLAEPPGRIPQVPPPEQGTQAPAYRPVSRNIDVPKRKSDAVEMDEMMAAMVLTSLSCSPV 180

Query: 626  VQSPPGVEANFSASRAACDPWKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQASPKYL 805
            VQSPPG EANFSASR ACDPWKE                              QASPKYL
Sbjct: 181  VQSPPGAEANFSASRTACDPWKESGDVSDSGSSTTSGHWSGSSGVSTPSPPHPQASPKYL 240

Query: 806  GDAFGSPQTDHGFETDPDAFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGIKRHVK 985
            GDAFGSPQTD+GFETDPDAFLLDEPAPRKRKNSVKVMYKCLWP+CGKVLRSIVGIKRHVK
Sbjct: 241  GDAFGSPQTDNGFETDPDAFLLDEPAPRKRKNSVKVMYKCLWPSCGKVLRSIVGIKRHVK 300

Query: 986  ALHLGDTVDSDQFKREEDFYYTEVQMKEEXXXXXXXXXXXXXTPGVT-XXXXXXXXXXXX 1162
            ALHLGDTVDSDQFKREEDFYYTEVQMK E             TP +T             
Sbjct: 301  ALHLGDTVDSDQFKREEDFYYTEVQMKGEAAAAGVPTADSAPTPSMTSPPLTILPPPPPP 360

Query: 1163 XXXXXXXDHPGLESYLPSGALSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYTSISWAT 1342
                   DHPGLESYLPSGALSKSAPGSFWHIQADHAYQALP FQIPVSPHIYTSISWA 
Sbjct: 361  KAQSSGPDHPGLESYLPSGALSKSAPGSFWHIQADHAYQALPPFQIPVSPHIYTSISWAA 420

Query: 1343 AP 1348
            AP
Sbjct: 421  AP 422


>ref|NP_001192682.1| zinc finger protein 704 [Bos taurus].
          Length = 413

 Score =  120 bits (301), Expect = 3e-27
 Identities = 96/288 (33%), Positives = 125/288 (43%), Gaps = 12/288 (4%)
 Frame = +2

Query: 524  VSRNIDVPK-RKSXXXXXXXXXXXXX-LTSLSCSPVVQSPPGVEANFSASRAACDPWKEX 697
            VS NIDVP  RKS              LTSLS SP+V+SPP V  N   S +    WKE 
Sbjct: 64   VSSNIDVPPARKSLEELDMDKVTAAMVLTSLSTSPLVRSPP-VRQNEGLSGS----WKEG 118

Query: 698  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXQASPKYLGDAFG-----SPQTDHGFETDPDA 862
                                           SP    D+F      +P  D   E +   
Sbjct: 119  GGVPSSTSSSGYWSWSAPSDQSNPSTP----SPPLSADSFKPFRSPAPPDDGIDEAEAGN 174

Query: 863  FLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDF 1042
             L DEP PRKRKNS+KVM+KCLW NCGKVL + VGI++H++ +HLG   +SD    EEDF
Sbjct: 175  LLFDEPIPRKRKNSMKVMFKCLWKNCGKVLSTAVGIQKHIRTIHLGRVGESDYSDGEEDF 234

Query: 1043 YYTEVQMKEEXXXXXXXXXXXXXTPGVTXXXXXXXXXXXXXXXXXXXDHPGLESYLPSGA 1222
            YYTE+++  +             +P  +                        +   P   
Sbjct: 235  YYTEIKLNTD-SVADGLSSLAPVSPSQSLASPPTFPIPDSSRTETPCAKTETKLMTP--- 290

Query: 1223 LSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYT-----SISWATAPL 1351
            LS+SAP + + +  DHAYQA P   IP +          SISW + P+
Sbjct: 291  LSRSAPTTLYLVHTDHAYQATPPVTIPGAAKFTPNGSSFSISWQSPPV 338


>ref|XP_002692758.1| PREDICTED: zinc finger protein 704-like [Bos taurus].
          Length = 413

 Score =  120 bits (301), Expect = 3e-27
 Identities = 96/288 (33%), Positives = 125/288 (43%), Gaps = 12/288 (4%)
 Frame = +2

Query: 524  VSRNIDVPK-RKSXXXXXXXXXXXXX-LTSLSCSPVVQSPPGVEANFSASRAACDPWKEX 697
            VS NIDVP  RKS              LTSLS SP+V+SPP V  N   S +    WKE 
Sbjct: 64   VSSNIDVPPARKSLEELDMDKVTAAMVLTSLSTSPLVRSPP-VRQNEGLSGS----WKEG 118

Query: 698  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXQASPKYLGDAFG-----SPQTDHGFETDPDA 862
                                           SP    D+F      +P  D   E +   
Sbjct: 119  GGVPSSTSSSGYWSWSAPSDQSNPSTP----SPPLSADSFKPFRSPAPPDDGIDEAEAGN 174

Query: 863  FLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDF 1042
             L DEP PRKRKNS+KVM+KCLW NCGKVL + VGI++H++ +HLG   +SD    EEDF
Sbjct: 175  LLFDEPIPRKRKNSMKVMFKCLWKNCGKVLSTAVGIQKHIRTIHLGRVGESDYSDGEEDF 234

Query: 1043 YYTEVQMKEEXXXXXXXXXXXXXTPGVTXXXXXXXXXXXXXXXXXXXDHPGLESYLPSGA 1222
            YYTE+++  +             +P  +                        +   P   
Sbjct: 235  YYTEIKLNTD-SVADGLSSLAPVSPSQSLASPPTFPIPDSSRTETPCAKTETKLMTP--- 290

Query: 1223 LSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYT-----SISWATAPL 1351
            LS+SAP + + +  DHAYQA P   IP +          SISW + P+
Sbjct: 291  LSRSAPTTLYLVHTDHAYQATPPVTIPGAAKFTPNGSSFSISWQSPPV 338


>ref|XP_002692290.1| PREDICTED: zinc finger protein 704-like [Bos taurus].
          Length = 289

 Score = 79.7 bits (195), Expect = 6e-15
 Identities = 53/153 (34%), Positives = 74/153 (48%)
 Frame = +2

Query: 599  LTSLSCSPVVQSPPGVEANFSASRAACDPWKEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 778
            LTSLS SP++   PGV   FS +    +PW+E                            
Sbjct: 6    LTSLSTSPLLLGAPGV--TFS-TEPCLEPWREAPVQPPGSGGGWDPASD----------- 51

Query: 779  XXQASPKYLGDAFGSPQTDHGFETDPDAFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRS 958
              Q+SP         P+  H        FL  E A RKRK+S++ +++CLW  CGKVL S
Sbjct: 52   --QSSPSTPSPPL-PPEAAH--------FLFGESALRKRKSSLQGLFQCLWKRCGKVLSS 100

Query: 959  IVGIKRHVKALHLGDTVDSDQFKREEDFYYTEV 1057
              G++RH++ +HLG   + +Q   EEDFYYTE+
Sbjct: 101  ASGMQRHIRLVHLGRQAELEQSDGEEDFYYTEL 133


>ref|XP_001787503.1| PREDICTED: zinc finger protein 704-like [Bos taurus].
          Length = 289

 Score = 79.7 bits (195), Expect = 6e-15
 Identities = 53/153 (34%), Positives = 74/153 (48%)
 Frame = +2

Query: 599  LTSLSCSPVVQSPPGVEANFSASRAACDPWKEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 778
            LTSLS SP++   PGV   FS +    +PW+E                            
Sbjct: 6    LTSLSTSPLLLGAPGV--TFS-TEPCLEPWREAPVQPPGSGGGWDPASD----------- 51

Query: 779  XXQASPKYLGDAFGSPQTDHGFETDPDAFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRS 958
              Q+SP         P+  H        FL  E A RKRK+S++ +++CLW  CGKVL S
Sbjct: 52   --QSSPSTPSPPL-PPEAAH--------FLFGESALRKRKSSLQGLFQCLWKRCGKVLSS 100

Query: 959  IVGIKRHVKALHLGDTVDSDQFKREEDFYYTEV 1057
              G++RH++ +HLG   + +Q   EEDFYYTE+
Sbjct: 101  ASGMQRHIRLVHLGRQAELEQSDGEEDFYYTEL 133


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 57,916,370
Number of extensions: 1718413
Number of successful extensions: 9927
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 9752
Number of HSP's successfully gapped: 8
Length of query: 484
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 378
Effective length of database: 14,174,046
Effective search space: 5357789388
Effective search space used: 5357789388
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008453
         (1454 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_543220.2| PREDICTED: similar to zinc finger protein 395 [...   565   e-161
Alignment   gi|XP_853536.1| PREDICTED: similar to glucocorticoid induced ge...   112   7e-25
Alignment   gi|XP_543104.2| PREDICTED: similar to SLC2A4 regulator [Canis f...    87   3e-17

>ref|XP_543220.2| PREDICTED: similar to zinc finger protein 395 [Canis familiaris].
          Length = 500

 Score =  565 bits (1455), Expect = e-161
 Identities = 290/421 (68%), Positives = 296/421 (70%)
 Frame = +2

Query: 86   MASVXXXXXXXXXXXXXXVLGPLGAVPPLEPQAELLEGAAPQPFLASKDTSCQEQPKEVL 265
            MASV              VLGP GA PP EPQ ELLEGAAPQ FLASKD SCQEQPKE+L
Sbjct: 1    MASVLSRRLGKRSLLGARVLGPPGAAPPSEPQTELLEGAAPQSFLASKDISCQEQPKEIL 60

Query: 266  KAPDTAGPQPVAFQPGQKVCVWYGGQECPGMVEQHSWAEDKVTVWLLDQKLQICCKAEEV 445
            KAP T+G Q V FQPGQKV VWYGGQEC G+VEQH WAEDKV VWLLDQKLQICCKAEEV
Sbjct: 61   KAPGTSGLQQVIFQPGQKVYVWYGGQECTGLVEQHRWAEDKVMVWLLDQKLQICCKAEEV 120

Query: 446  WLAXXXXXXXXXXXXXXXXXXXXYRPVSRNIDVPKRKSXXXXXXXXXXXXXLTSLSCSPV 625
            WLA                    YRPVSRNIDVPKRKS             LTSLSCSPV
Sbjct: 121  WLAELQGPIPQAPPLEQGTQTPAYRPVSRNIDVPKRKSDAVEMDEMMAAMVLTSLSCSPV 180

Query: 626  VQSPPGVEANFSASRAACDPWKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQASPKYL 805
            VQSPPG EANFSASRAACDPWKE                              QASPKYL
Sbjct: 181  VQSPPGAEANFSASRAACDPWKESGDVSDSGSSTTSGHWSASSGISTPSPPHPQASPKYL 240

Query: 806  GDAFGSPQTDHGFETDPDAFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGIKRHVK 985
            GDAFGSPQTD+GFETDPDAFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGIKRHVK
Sbjct: 241  GDAFGSPQTDNGFETDPDAFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGIKRHVK 300

Query: 986  ALHLGDTVDSDQFKREEDFYYTEVQMKEEXXXXXXXXXXXXXTPGVTXXXXXXXXXXXXX 1165
            ALHLGDTVDSDQFKREEDFYYTEVQMKEE             TPG+T             
Sbjct: 301  ALHLGDTVDSDQFKREEDFYYTEVQMKEEAAAAGTPAADPAPTPGMTSPPLALLPPPPPK 360

Query: 1166 XXXXXXDHPGLESYLPSGALSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYTSISWATA 1345
                  +HPGLESYLPSGALSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYTSISWA A
Sbjct: 361  TQSSGPEHPGLESYLPSGALSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYTSISWAAA 420

Query: 1346 P 1348
            P
Sbjct: 421  P 421


>ref|XP_853536.1| PREDICTED: similar to glucocorticoid induced gene 1 [Canis
            familiaris].
          Length = 429

 Score =  112 bits (281), Expect = 7e-25
 Identities = 67/182 (36%), Positives = 89/182 (48%), Gaps = 6/182 (3%)
 Frame = +2

Query: 824  PQTDHGF-ETDPDAFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGIKRHVKALHLG 1000
            P  D G  E +    L DEP PRKRKNS+KVM+KCLW NCGKVL +  GI++H++ +HLG
Sbjct: 177  PPADDGIDEAEASNLLFDEPIPRKRKNSMKVMFKCLWKNCGKVLSTAAGIQKHIRTIHLG 236

Query: 1001 DTVDSDQFKREEDFYYTEVQMKEEXXXXXXXXXXXXXTPGVTXXXXXXXXXXXXXXXXXX 1180
               DSD    EEDFYYTE+++  +             +P  +                  
Sbjct: 237  RVGDSDYSDGEEDFYYTEIKLNTD-SVADGLSSLAPVSPSQSLASPPTFPIPDSSRTETP 295

Query: 1181 XDHPGLESYLPSGALSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYT-----SISWATA 1345
                  +   P   LS+SAP + + +  DHAYQA P   IP S          SISW + 
Sbjct: 296  CAKTETKLMTP---LSRSAPTTLYLVHTDHAYQATPPVTIPGSAKFTPNGSSFSISWQSP 352

Query: 1346 PL 1351
            P+
Sbjct: 353  PV 354


>ref|XP_543104.2| PREDICTED: similar to SLC2A4 regulator [Canis familiaris].
          Length = 652

 Score = 87.4 bits (215), Expect = 3e-17
 Identities = 54/155 (34%), Positives = 75/155 (48%)
 Frame = +2

Query: 599  LTSLSCSPVVQSPPGVEANFSASRAACDPWKEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 778
            LTSLS SP++   P    +        +PWKE                            
Sbjct: 386  LTSLSTSPLLLGAPAAACS---PEPGLEPWKETLARPLGSCSSSSGDWGWDLASD----- 437

Query: 779  XXQASPKYLGDAFGSPQTDHGFETDPDAFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRS 958
              Q+SP        S +T H        FL  EPAPRKRK+SV+V+++CLW  CGKVL +
Sbjct: 438  --QSSPSTPSPPLPS-ETAH--------FLFGEPAPRKRKSSVQVLFQCLWKRCGKVLST 486

Query: 959  IVGIKRHVKALHLGDTVDSDQFKREEDFYYTEVQM 1063
              G++RH++ +HLG   + +Q   EEDFYYTE+ +
Sbjct: 487  ASGMQRHIRLVHLGRQAEPEQSDGEEDFYYTELDV 521


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 60,243,209
Number of extensions: 1768455
Number of successful extensions: 10184
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9983
Number of HSP's successfully gapped: 3
Length of query: 484
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 377
Effective length of database: 15,307,552
Effective search space: 5770947104
Effective search space used: 5770947104
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008453
         (1454 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003132868.1| PREDICTED: zinc finger protein 395 isoform 1...   639   0.0  
Alignment   gi|XP_003132869.1| PREDICTED: zinc finger protein 395 isoform 2...   609   e-174
Alignment   gi|XP_001925562.3| PREDICTED: zinc finger protein 704 [Sus scro...   123   3e-28

>ref|XP_003132868.1| PREDICTED: zinc finger protein 395 isoform 1 [Sus scrofa].
          Length = 517

 Score =  639 bits (1649), Expect = 0.0
 Identities = 326/438 (74%), Positives = 328/438 (74%)
 Frame = +2

Query: 35   MEKKALKQRQMERKGNSMASVXXXXXXXXXXXXXXVLGPLGAVPPLEPQAELLEGAAPQP 214
            MEKKALKQRQMERKG+SMASV              VLGP GAVPPLEPQAELLEGAAPQP
Sbjct: 1    MEKKALKQRQMERKGSSMASVLSRRLGKRSLLGARVLGPPGAVPPLEPQAELLEGAAPQP 60

Query: 215  FLASKDTSCQEQPKEVLKAPDTAGPQPVAFQPGQKVCVWYGGQECPGMVEQHSWAEDKVT 394
            FLASKDTSCQEQPKEVLKAPDTAGPQPVAFQPGQKVCVWYGGQECPGMVEQHSWAEDKVT
Sbjct: 61   FLASKDTSCQEQPKEVLKAPDTAGPQPVAFQPGQKVCVWYGGQECPGMVEQHSWAEDKVT 120

Query: 395  VWLLDQKLQICCKAEEVWLAXXXXXXXXXXXXXXXXXXXXYRPVSRNIDVPKRKSXXXXX 574
            VWLLDQKLQICCKAEEVWLA                    YRPVSRNIDVPKRKS     
Sbjct: 121  VWLLDQKLQICCKAEEVWLAELQGPIPQAPPPEPGTQAPAYRPVSRNIDVPKRKSDAVEM 180

Query: 575  XXXXXXXXLTSLSCSPVVQSPPGVEANFSASRAACDPWKEXXXXXXXXXXXXXXXXXXXX 754
                    LTSLSCSPVVQSPPGVEANFSASRAACDPWKE                    
Sbjct: 181  DEMMAAMVLTSLSCSPVVQSPPGVEANFSASRAACDPWKESGDVSDSGSSTTSGHWSGSS 240

Query: 755  XXXXXXXXXXQASPKYLGDAFGSPQTDHGFETDPDAFLLDEPAPRKRKNSVKVMYKCLWP 934
                      QASPKYLGDAFGSPQTDHGFETDPDAFLLDEPAPRKRKNSVKVMYKCLWP
Sbjct: 241  GVSTPSPPHPQASPKYLGDAFGSPQTDHGFETDPDAFLLDEPAPRKRKNSVKVMYKCLWP 300

Query: 935  NCGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDFYYTEVQMKEEXXXXXXXXXXXXXT 1114
            NCGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDFYYTEVQMKEE             T
Sbjct: 301  NCGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDFYYTEVQMKEEAAALGAPAADLAPT 360

Query: 1115 PGVTXXXXXXXXXXXXXXXXXXXDHPGLESYLPSGALSKSAPGSFWHIQADHAYQALPSF 1294
            PG+T                   DHPGLESYLPSGALSKSAPGSFWHIQADHAYQALPSF
Sbjct: 361  PGMTSPPLAILPPPPPKAQPSGPDHPGLESYLPSGALSKSAPGSFWHIQADHAYQALPSF 420

Query: 1295 QIPVSPHIYTSISWATAP 1348
            QIPVSPHIYTSISWATAP
Sbjct: 421  QIPVSPHIYTSISWATAP 438


>ref|XP_003132869.1| PREDICTED: zinc finger protein 395 isoform 2 [Sus scrofa].
          Length = 500

 Score =  609 bits (1570), Expect = e-174
 Identities = 310/421 (73%), Positives = 311/421 (73%)
 Frame = +2

Query: 86   MASVXXXXXXXXXXXXXXVLGPLGAVPPLEPQAELLEGAAPQPFLASKDTSCQEQPKEVL 265
            MASV              VLGP GAVPPLEPQAELLEGAAPQPFLASKDTSCQEQPKEVL
Sbjct: 1    MASVLSRRLGKRSLLGARVLGPPGAVPPLEPQAELLEGAAPQPFLASKDTSCQEQPKEVL 60

Query: 266  KAPDTAGPQPVAFQPGQKVCVWYGGQECPGMVEQHSWAEDKVTVWLLDQKLQICCKAEEV 445
            KAPDTAGPQPVAFQPGQKVCVWYGGQECPGMVEQHSWAEDKVTVWLLDQKLQICCKAEEV
Sbjct: 61   KAPDTAGPQPVAFQPGQKVCVWYGGQECPGMVEQHSWAEDKVTVWLLDQKLQICCKAEEV 120

Query: 446  WLAXXXXXXXXXXXXXXXXXXXXYRPVSRNIDVPKRKSXXXXXXXXXXXXXLTSLSCSPV 625
            WLA                    YRPVSRNIDVPKRKS             LTSLSCSPV
Sbjct: 121  WLAELQGPIPQAPPPEPGTQAPAYRPVSRNIDVPKRKSDAVEMDEMMAAMVLTSLSCSPV 180

Query: 626  VQSPPGVEANFSASRAACDPWKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQASPKYL 805
            VQSPPGVEANFSASRAACDPWKE                              QASPKYL
Sbjct: 181  VQSPPGVEANFSASRAACDPWKESGDVSDSGSSTTSGHWSGSSGVSTPSPPHPQASPKYL 240

Query: 806  GDAFGSPQTDHGFETDPDAFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGIKRHVK 985
            GDAFGSPQTDHGFETDPDAFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGIKRHVK
Sbjct: 241  GDAFGSPQTDHGFETDPDAFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGIKRHVK 300

Query: 986  ALHLGDTVDSDQFKREEDFYYTEVQMKEEXXXXXXXXXXXXXTPGVTXXXXXXXXXXXXX 1165
            ALHLGDTVDSDQFKREEDFYYTEVQMKEE             TPG+T             
Sbjct: 301  ALHLGDTVDSDQFKREEDFYYTEVQMKEEAAALGAPAADLAPTPGMTSPPLAILPPPPPK 360

Query: 1166 XXXXXXDHPGLESYLPSGALSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYTSISWATA 1345
                  DHPGLESYLPSGALSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYTSISWATA
Sbjct: 361  AQPSGPDHPGLESYLPSGALSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYTSISWATA 420

Query: 1346 P 1348
            P
Sbjct: 421  P 421


>ref|XP_001925562.3| PREDICTED: zinc finger protein 704 [Sus scrofa].
          Length = 413

 Score =  123 bits (308), Expect = 3e-28
 Identities = 98/289 (33%), Positives = 127/289 (43%), Gaps = 13/289 (4%)
 Frame = +2

Query: 524  VSRNIDVP--KRKSXXXXXXXXXXXXXLTSLSCSPVVQSPPGVEANFSASRAACDPWKEX 697
            VS NIDVP  ++ S             LTSLS SP+V+SPP V  N   S +    WKE 
Sbjct: 64   VSSNIDVPPARKSSEELDMDKVTAAMVLTSLSTSPLVRSPP-VRQNEGLSGS----WKEG 118

Query: 698  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXQASPKYLGDAFG---SPQ-TDHGF-ETDPDA 862
                                           SP    D+F    SP  TD G  E +   
Sbjct: 119  SGVPSSTSSSGYWSWSAPSDQSNPSTP----SPPLSADSFKPFRSPAPTDDGIDEAEASN 174

Query: 863  FLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDF 1042
             L DEP PRKRKNS+KVM+KCLW NCGKVL +  GI++H++ +HLG   +SD    EEDF
Sbjct: 175  LLFDEPIPRKRKNSMKVMFKCLWKNCGKVLSTAAGIQKHIRTIHLGRVGESDYSDGEEDF 234

Query: 1043 YYTEVQMKEEXXXXXXXXXXXXXTPGVTXXXXXXXXXXXXXXXXXXXDHPGLESYLP-SG 1219
            YYTE+++  +                V+                   + P  +S      
Sbjct: 235  YYTEIKLNTDSVADGLSSLAP-----VSPSQSLASPPTFPVPDSSRIETPCAKSETKLMT 289

Query: 1220 ALSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYT-----SISWATAPL 1351
             LS+SAP + + +  DHAYQA P   IP S          SISW + P+
Sbjct: 290  PLSRSAPTTLYLVHTDHAYQATPPVTIPGSAKFTPNGSSFSISWQSPPV 338


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 37,452,587
Number of extensions: 1113838
Number of successful extensions: 6713
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6593
Number of HSP's successfully gapped: 4
Length of query: 484
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 381
Effective length of database: 8,779,541
Effective search space: 3345005121
Effective search space used: 3345005121
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008453
         (1454 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_950194.2| zinc finger protein 395 [Mus musculus].              488   e-138
Alignment   gi|NP_573481.1| zinc finger protein 704 [Mus musculus].              124   1e-28

>ref|NP_950194.2| zinc finger protein 395 [Mus musculus].
          Length = 508

 Score =  488 bits (1256), Expect = e-138
 Identities = 264/408 (64%), Positives = 272/408 (66%), Gaps = 8/408 (1%)
 Frame = +2

Query: 149  PLGAVPPLEPQAELLEGAAPQPFLASKDTSCQEQPKEVLKAPDTAGPQPVAFQPGQKVCV 328
            P GA  PLEPQ E+ EGA     L SKD  CQEQPKE+LKA  T+G   VAFQPGQKVCV
Sbjct: 25   PSGATLPLEPQIEVPEGAMSLSPLTSKDPVCQEQPKELLKALGTSGHPQVAFQPGQKVCV 84

Query: 329  WYGGQECPGMVEQHSWAEDKVTVWLLDQKLQICCKAEEVWLAXXXXXXXXXXXXXXXXXX 508
            WYGGQEC G+VEQHSWAEDKVTV LLDQKLQI CK EEVWLA                  
Sbjct: 85   WYGGQECKGLVEQHSWAEDKVTVRLLDQKLQIRCKVEEVWLAELQGSASHVPALEPGAQV 144

Query: 509  XXYRPVSRNIDVPKRKSXXXXXXXXXXXXXLTSLSCSPVVQSPPGVEANFSASRAAC-DP 685
              YRPVSRNIDVPKRKS             LTSLSCSPVVQSPPG E  FS SRAAC D 
Sbjct: 145  PAYRPVSRNIDVPKRKSDAVEMDEMMAAMVLTSLSCSPVVQSPPGAEPIFSVSRAACGDL 204

Query: 686  WKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQASPKYLGDAFGSPQTDHGFETDPDAF 865
            WKE                              QASPKYLGDAFGSPQTDHGFETDPD F
Sbjct: 205  WKESGDVSDSGSSGHWSGSSGSSTPSPPHP---QASPKYLGDAFGSPQTDHGFETDPDPF 261

Query: 866  LLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDFY 1045
            LLDEPAPRKR+NSVKVMYKCLWP+CGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDFY
Sbjct: 262  LLDEPAPRKRRNSVKVMYKCLWPSCGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDFY 321

Query: 1046 YTEVQMKEEXXXXXXXXXXXXXTPG-------VTXXXXXXXXXXXXXXXXXXXDHPGLES 1204
            YTE+QMKEE               G       VT                   +HPGLES
Sbjct: 322  YTEMQMKEESAQAVAAPPAPGTPMGEPASTSRVTSPSLAALSLPPAKVQSSGPEHPGLES 381

Query: 1205 YLPSGALSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYTSISWATAP 1348
             LPS ALSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYTSISWA AP
Sbjct: 382  SLPSVALSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYTSISWAAAP 429


>ref|NP_573481.1| zinc finger protein 704 [Mus musculus].
          Length = 566

 Score =  124 bits (312), Expect = 1e-28
 Identities = 99/298 (33%), Positives = 130/298 (43%), Gaps = 13/298 (4%)
 Frame = +2

Query: 524  VSRNIDVP--KRKSXXXXXXXXXXXXXLTSLSCSPVVQSPPGVEANFSASRAACDPWKEX 697
            VS NIDVP  ++ S             LTSLS SP+V+SPP V  N   S +    WKE 
Sbjct: 219  VSSNIDVPPARKSSEELDMDKVTAAMVLTSLSTSPLVRSPP-VRPNEGLSGS----WKEG 273

Query: 698  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXQASPKYLGDAFG-----SPQTDHGFETDPDA 862
                                           SP    D+F      +P  D   E D   
Sbjct: 274  APSSSSSSGYWSWSAPSDQSNPSTP------SPPLSADSFKPFRSPAPPDDGIDEADASN 327

Query: 863  FLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDF 1042
             L DEP PRKRKNS+KVM+KCLW +CGKVL +  GI++H++A+HLG   +SD    EEDF
Sbjct: 328  LLFDEPIPRKRKNSMKVMFKCLWKSCGKVLNTAAGIQKHIRAVHLGRVGESDCSDGEEDF 387

Query: 1043 YYTEVQMKEEXXXXXXXXXXXXXTPGVTXXXXXXXXXXXXXXXXXXXDHPGLESYLPSGA 1222
            YYTE+++  +             +P  +                        +   P   
Sbjct: 388  YYTEIKLNTD-ATAEGLNTVAPVSPSQSLASAPAFPIPDSSRTETPCAKTDTKLVTP--- 443

Query: 1223 LSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYT-----SISWATAPLHGL-LPVSGP 1378
            LS+SAP + + +  DHAYQA P   IP S          SISW + P+    +PVS P
Sbjct: 444  LSRSAPTTLYLVHTDHAYQATPPVTIPGSAKFTPNGSSFSISWQSPPVTFTGVPVSPP 501


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 49,594,622
Number of extensions: 1414210
Number of successful extensions: 7690
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7576
Number of HSP's successfully gapped: 4
Length of query: 484
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 379
Effective length of database: 12,463,779
Effective search space: 4723772241
Effective search space used: 4723772241
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008453
         (1454 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_061130.1| zinc finger protein 395 [Homo sapiens].              524   e-148
Alignment   gi|NP_001028895.1| zinc finger protein 704 [Homo sapiens].           126   6e-29
Alignment   gi|NP_064446.2| SLC2A4 regulator [Homo sapiens].                      78   2e-14

>ref|NP_061130.1| zinc finger protein 395 [Homo sapiens].
          Length = 513

 Score =  524 bits (1349), Expect = e-148
 Identities = 277/437 (63%), Positives = 287/437 (65%), Gaps = 16/437 (3%)
 Frame = +2

Query: 86   MASVXXXXXXXXXXXXXXVLGPLG-----AVPPLEPQAELLEGAAPQPFLASKDTSCQEQ 250
            MASV              VLGP       A PP EP   LLEGAAPQPF  S DT CQEQ
Sbjct: 1    MASVLSRRLGKRSLLGARVLGPSASEGPSAAPPSEP---LLEGAAPQPFTTSDDTPCQEQ 57

Query: 251  PKEVLKAPDTAGPQPVAFQPGQKVCVWYGGQECPGMVEQHSWAEDKVTVWLLDQKLQICC 430
            PKEVLKAP T+G Q VAFQPGQKV VWYGGQEC G+VEQHSW E +VTVWLL+QKLQ+CC
Sbjct: 58   PKEVLKAPSTSGLQQVAFQPGQKVYVWYGGQECTGLVEQHSWMEGQVTVWLLEQKLQVCC 117

Query: 431  KAEEVWLAXXXXXXXXXXXXXXXXXXXXYRPVSRNIDVPKRKSXXXXXXXXXXXXXLTSL 610
            + EEVWLA                    YRPVSRNIDVPKRKS             LTSL
Sbjct: 118  RVEEVWLAELQGPCPQAPPLEPGAQALAYRPVSRNIDVPKRKSDAVEMDEMMAAMVLTSL 177

Query: 611  SCSPVVQSPPGVEANFSASRAACDPWKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQA 790
            SCSPVVQSPPG EANFSASRAACDPWKE                              QA
Sbjct: 178  SCSPVVQSPPGTEANFSASRAACDPWKESGDISDSGSSTTSGHWSGSSGVSTPSPPHPQA 237

Query: 791  SPKYLGDAFGSPQTDHGFETDPDAFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGI 970
            SPKYLGDAFGSPQTDHGFETDPD FLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGI
Sbjct: 238  SPKYLGDAFGSPQTDHGFETDPDPFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGI 297

Query: 971  KRHVKALHLGDTVDSDQFKREEDFYYTEVQMKEEXXXXXXXXXXXXXTPG---------- 1120
            KRHVKALHLGDTVDSDQFKREEDFYYTEVQ+KEE              PG          
Sbjct: 298  KRHVKALHLGDTVDSDQFKREEDFYYTEVQLKEESAAAAAAAAAGTPVPGTPTSEPAPTP 357

Query: 1121 -VTXXXXXXXXXXXXXXXXXXXDHPGLESYLPSGALSKSAPGSFWHIQADHAYQALPSFQ 1297
             +T                   +HPG ES LPSGALSKSAPGSFWHIQADHAYQALPSFQ
Sbjct: 358  SMTGLPLSALPPPLHKAQSSGPEHPGPESSLPSGALSKSAPGSFWHIQADHAYQALPSFQ 417

Query: 1298 IPVSPHIYTSISWATAP 1348
            IPVSPHIYTS+SWA AP
Sbjct: 418  IPVSPHIYTSVSWAAAP 434


>ref|NP_001028895.1| zinc finger protein 704 [Homo sapiens].
          Length = 412

 Score =  126 bits (316), Expect = 6e-29
 Identities = 99/288 (34%), Positives = 127/288 (44%), Gaps = 12/288 (4%)
 Frame = +2

Query: 524  VSRNIDVP--KRKSXXXXXXXXXXXXXLTSLSCSPVVQSPPGVEANFSASRAACDPWKEX 697
            VS NIDVP  ++ S             LTSLS SP+V+SPP V  N S S +    WKE 
Sbjct: 64   VSSNIDVPPARKSSEELDMDKVTAAMVLTSLSTSPLVRSPP-VRPNESLSGS----WKEG 118

Query: 698  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXQASPKYLGDAFG---SP-QTDHGF-ETDPDA 862
                                           SP    D+F    SP Q D G  E +   
Sbjct: 119  GCVPSSTSSSGYWSWSAPSDQSNPSTP----SPPLSADSFKPFRSPAQPDDGIDEAEASN 174

Query: 863  FLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDF 1042
             L DEP PRKRKNS+KVM+KCLW NCGKVL +  GI++H++ +HLG   DSD    EEDF
Sbjct: 175  LLFDEPIPRKRKNSMKVMFKCLWKNCGKVLSTAAGIQKHIRTIHLGRVGDSDYSDGEEDF 234

Query: 1043 YYTEVQMKEEXXXXXXXXXXXXXTPGVTXXXXXXXXXXXXXXXXXXXDHPGLESYLPSGA 1222
            YYTE+++  +             +P  +                        +   P   
Sbjct: 235  YYTEIKLNTD-SVADGLSSLAPVSPSQSLASPPTFPIPDSSRTETPCAKTETKLMTP--- 290

Query: 1223 LSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYT-----SISWATAPL 1351
            LS+SAP + + +  DHAYQA P   IP S          SISW + P+
Sbjct: 291  LSRSAPTTLYLVHTDHAYQATPPVTIPGSAKFTPNGSSFSISWQSPPV 338


>ref|NP_064446.2| SLC2A4 regulator [Homo sapiens].
          Length = 387

 Score = 78.2 bits (191), Expect = 2e-14
 Identities = 51/155 (32%), Positives = 70/155 (45%)
 Frame = +2

Query: 599  LTSLSCSPVVQSPPGVEANFSASRAACDPWKEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 778
            LTSLS SP++   P   A FS      +PWKE                            
Sbjct: 111  LTSLSTSPLLLGAP--VAAFSPE-PGLEPWKEALVRPPGSYSSSSNSGDWGWDLASDQSS 167

Query: 779  XXQASPKYLGDAFGSPQTDHGFETDPDAFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRS 958
                SP         P+  H        FL  EP  RKRK+  +VM++CLW +CGKVL +
Sbjct: 168  PSTPSPPL------PPEAAH--------FLFGEPTLRKRKSPAQVMFQCLWKSCGKVLST 213

Query: 959  IVGIKRHVKALHLGDTVDSDQFKREEDFYYTEVQM 1063
               ++RH++ +HLG   + +Q   EEDFYYTE+ +
Sbjct: 214  ASAMQRHIRLVHLGRQAEPEQSDGEEDFYYTELDV 248


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 59,038,751
Number of extensions: 1719424
Number of successful extensions: 9690
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9554
Number of HSP's successfully gapped: 4
Length of query: 484
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 378
Effective length of database: 14,802,980
Effective search space: 5595526440
Effective search space used: 5595526440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008453
         (1454 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr14                                                         551   e-154

>Sscrofa_Chr14 
||          Length = 153851969

 Score =  551 bits (278), Expect = e-154
 Identities = 281/282 (99%)
 Strand = Plus / Minus

                                                                            
Query: 999      gggataccgtggactccgaccagttcaagcgggaggaggatttctactacacggaggtgc 1058
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13297375 gggataccgtggactccgaccagttcaagcgggaggaggatttctactacacggaggtgc 13297316

                                                                            
Query: 1059     agatgaaggaggaagctgctgccttgggcgcccccgcagctgacctggctcccacccccg 1118
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13297315 agatgaaggaggaagctgctgccttgggcgcccccgcagctgacctggctcccacccccg 13297256

                                                                            
Query: 1119     gcgtgaccagcccacccctcgccattctcccaccgcctcctcccaaagcccagccctcag 1178
                || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13297255 gcatgaccagcccacccctcgccattctcccaccgcctcctcccaaagcccagccctcag 13297196

                                                                            
Query: 1179     gcccagatcaccctggcctggagtcctacctgccctctggtgctctcagcaagtcagctc 1238
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13297195 gcccagatcaccctggcctggagtcctacctgccctctggtgctctcagcaagtcagctc 13297136

                                                          
Query: 1239     ctggctccttctggcacattcaggccgaccatgcataccagg 1280
                ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13297135 ctggctccttctggcacattcaggccgaccatgcataccagg 13297094



 Score =  482 bits (243), Expect = e-133
 Identities = 249/251 (99%)
 Strand = Plus / Minus

                                                                            
Query: 71       aggaaaggcaacagcatggccagcgtgctgtcccggcgccttggcaagcggtccctcttg 130
                |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13308984 aggaaaggcagcagcatggccagcgtgctgtcccggcgccttggcaagcggtccctcttg 13308925

                                                                            
Query: 131      ggagcccgggtgttggggccacttggggctgtcccacccttggagccgcaggcagagctg 190
                |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 13308924 ggagcccgggtgttggggccacctggggctgtcccacccttggagccgcaggcagagctg 13308865

                                                                            
Query: 191      ctggagggggcggctccccagcccttccttgcctctaaggacacgtcctgccaggagcag 250
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13308864 ctggagggggcggctccccagcccttccttgcctctaaggacacgtcctgccaggagcag 13308805

                                                                            
Query: 251      cccaaggaagtgctcaaggctcctgacaccgcaggtcctcagccagtggcctttcagcct 310
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13308804 cccaaggaagtgctcaaggctcctgacaccgcaggtcctcagccagtggcctttcagcct 13308745

                           
Query: 311      gggcagaaggt 321
                |||||||||||
Sbjct: 13308744 gggcagaaggt 13308734



 Score =  460 bits (232), Expect = e-126
 Identities = 235/236 (99%)
 Strand = Plus / Minus

                                                                            
Query: 318      aggtttgtgtgtggtatgggggtcaagaatgcccagggatggtggagcagcatagttggg 377
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13306947 aggtttgtgtgtggtatgggggtcaagaatgcccagggatggtggagcagcatagttggg 13306888

                                                                            
Query: 378      cagaggataaggtgactgtctggctgttggaccagaagttacaaatctgctgcaaagcgg 437
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13306887 cagaggataaggtgactgtctggctgttggaccagaagttacaaatctgctgcaaagcgg 13306828

                                                                            
Query: 438      aggaggtgtggctggctgagctgcagggccccatcccccaggcgccacctccagagcctg 497
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13306827 aggaggtgtggctggctgagctgcagggccccatcccccaggcgccacctccagagcctg 13306768

                                                                        
Query: 498      aaacccaggcaccagcctaccggcctgtctccaggaacattgacgtcccaaagagg 553
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13306767 gaacccaggcaccagcctaccggcctgtctccaggaacattgacgtcccaaagagg 13306712



 Score =  345 bits (174), Expect = 4e-92
 Identities = 216/237 (91%)
 Strand = Plus / Minus

                                                                            
Query: 662      gcttcccgcgccgcctgtgacccgtggaaggagagtggcgacgtgtcagacagcggcagt 721
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13298809 gcttcccgcgccgcctgtgacccgtggaaggagagtggcgacgtgtcagacagcggcagt 13298750

                                                                            
Query: 722      agcaccaccagcgggcactggagcgggagcagcggtgtctccannnnnnnnnnnnnnnnn 781
                |||||||||||||||||||||||||||||||||||||||||||                 
Sbjct: 13298749 agcaccaccagcgggcactggagcgggagcagcggtgtctccaccccctcccctccccac 13298690

                                                                            
Query: 782      nnnnaggccagccccaagtatttgggggatgcctttggttctccgcaaactgatcatggt 841
                    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13298689 ccccaggccagccccaagtatttgggggatgcctttggttctccgcaaactgatcatggt 13298630

                                                                         
Query: 842      tttgagactgatccagatgctttcctgttggatgaaccagctccccgcaagagaaag 898
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13298629 tttgagactgatccagatgctttcctgttggatgaaccagctccccgcaagagaaag 13298573



 Score =  222 bits (112), Expect = 4e-55
 Identities = 112/112 (100%)
 Strand = Plus / Minus

                                                                            
Query: 551      aggaagtcggatgccgtggaaatggacgagatgatggcggccatggtgctgacctccctg 610
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13304314 aggaagtcggatgccgtggaaatggacgagatgatggcggccatggtgctgacctccctg 13304255

                                                                    
Query: 611      tcctgcagccccgttgtgcagagtcctcccggggtcgaggccaacttctctg 662
                ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13304254 tcctgcagccccgttgtgcagagtcctcccggggtcgaggccaacttctctg 13304203



 Score =  206 bits (104), Expect = 2e-50
 Identities = 104/104 (100%)
 Strand = Plus / Minus

                                                                            
Query: 897      agaactcggtgaaggtgatgtacaagtgcctgtggcccaactgcggcaaagtcctgcgct 956
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13298168 agaactcggtgaaggtgatgtacaagtgcctgtggcccaactgcggcaaagtcctgcgct 13298109

                                                            
Query: 957      ccatcgtgggcatcaagcgacacgtcaaagcccttcacctgggg 1000
                ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13298108 ccatcgtgggcatcaagcgacacgtcaaagcccttcacctgggg 13298065



 Score =  180 bits (91), Expect = 1e-42
 Identities = 98/99 (98%), Gaps = 1/99 (1%)
 Strand = Plus / Minus

                                                                            
Query: 1277     caggccctgccatcctttcagatccccgtctcgccacacatctacaccagtattagctgg 1336
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13295762 caggccctgccatcctttcagatccccgtctcgccacacatctacaccagtattagctgg 13295703

                                                       
Query: 1337     gccactgcccccctccacggcctcctccctgtctccggt 1375
                |||||||| ||||||||||||||||||||||||||||||
Sbjct: 13295702 gccactgc-cccctccacggcctcctccctgtctccggt 13295665



 Score =  165 bits (83), Expect = 8e-38
 Identities = 101/107 (94%)
 Strand = Plus / Minus

                                                                            
Query: 400      gctgttggaccagaagttacaaatctgctgcaaagcggaggaggtgtggctggctgagct 459
                ||||||||| ||||||||||||||||||||||||| ||||||||| |||||||| |||||
Sbjct: 13304902 gctgttggagcagaagttacaaatctgctgcaaagtggaggaggtatggctggcggagct 13304843

                                                               
Query: 460      gcagggccccatcccccaggcgccacctccagagcctgaaacccagg 506
                |||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 13304842 gcagggccccatcccccaggcgccacctccagagccgggaacccagg 13304796



 Score =  137 bits (69), Expect = 2e-29
 Identities = 69/69 (100%)
 Strand = Plus / Minus

                                                                            
Query: 5        aacgagagggaccgagtaaaatgtcataaaatggagaagaaagcattaaagcaaaggcaa 64
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13339312 aacgagagggaccgagtaaaatgtcataaaatggagaagaaagcattaaagcaaaggcaa 13339253

                         
Query: 65       atggaaagg 73
                |||||||||
Sbjct: 13339252 atggaaagg 13339244



 Score =  133 bits (67), Expect = 3e-28
 Identities = 77/79 (97%), Gaps = 1/79 (1%)
 Strand = Plus / Minus

                                                                            
Query: 1373     ggtccggagccggtcgctaagcttcagcgagccccacccagccaccccctgccatgaaat 1432
                |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 13294402 ggtccggagccggtcgctaagcttcagcgagccccagc-agccaccccctgccatgaaat 13294344

                                   
Query: 1433     ctcacctgattgtcacttc 1451
                |||||||||||||||||||
Sbjct: 13294343 ctcacctgattgtcacttc 13294325


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 39,775,910
Number of extensions: 321
Number of successful extensions: 321
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 11
Length of query: 1454
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1433
Effective length of database: 2,808,413,156
Effective search space: 4024456052548
Effective search space used: 4024456052548
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)