Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008491
(1105 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068890.1| translin [Bos taurus]. 407 e-114
Alignment gi|NP_001069474.2| translin-associated factor X [Bos taurus]. 51 2e-06
Alignment gi|XP_002706629.1| PREDICTED: translin-associated factor X [Bos... 51 2e-06
>ref|NP_001068890.1| translin [Bos taurus].
Length = 228
Score = 407 bits (1047), Expect = e-114
Identities = 210/228 (92%), Positives = 211/228 (92%)
Frame = +2
Query: 167 MSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLK 346
MSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLK
Sbjct: 1 MSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLK 60
Query: 347 AREHFGTVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLESETLVTREAVT 526
AREHFGTVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLESETLVTREAVT
Sbjct: 61 AREHFGTVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLESETLVTREAVT 120
Query: 527 EILGIEPDREKGFHLDVEDYLSGVLILASELSRLSVNSVTAGDYARPLHISTFINELDSG 706
EILGIEPDREKGFHLDVEDYLSGVLILASELSRLSVNSVTAGDY+RPLHISTFINELDSG
Sbjct: 121 EILGIEPDREKGFHLDVEDYLSGVLILASELSRLSVNSVTAGDYSRPLHISTFINELDSG 180
Query: 707 FRLLNLKNDSLRKRYDGXXXXXXXXXXXXXXXSIRGFNKETVAACSEK 850
FRLLNLKNDSLRKRYDG SIRGFNKET AAC EK
Sbjct: 181 FRLLNLKNDSLRKRYDGLKYDVKKVEEVVYDLSIRGFNKETAAACVEK 228
>ref|NP_001069474.2| translin-associated factor X [Bos taurus].
Length = 290
Score = 51.2 bits (121), Expect = 2e-06
Identities = 45/196 (22%), Positives = 83/196 (42%), Gaps = 18/196 (9%)
Frame = +2
Query: 185 FVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFG 364
F Q L A D E + K+ + + ++ + LL H+ D+ + ++
Sbjct: 39 FKSFQQELDARHDKYERLVKLSRDITVESKRTIFLL---HRITSAPDMEEILTESEVKLD 95
Query: 365 TVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLESETLVTREAV------- 523
V+ + + + E ++FH LQ V +F ++++ +L++ + +
Sbjct: 96 GVRQKILQVAQELSVEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFS 155
Query: 524 TEILGIE--------PDREKG---FHLDVEDYLSGVLILASELSRLSVNSVTAGDYARPL 670
TE G E D++ G + DYL GV L EL R+ +NSV GD P
Sbjct: 156 TEDNGKENKTPSSDAQDKQCGTWRLRITPVDYLLGVADLTGELMRMCINSVGNGDIDTPF 215
Query: 671 HISTFINELDSGFRLL 718
+S F+ ++ GF +
Sbjct: 216 EVSQFLRQVYDGFSFI 231
>ref|XP_002706629.1| PREDICTED: translin-associated factor X [Bos taurus].
Length = 290
Score = 51.2 bits (121), Expect = 2e-06
Identities = 45/196 (22%), Positives = 83/196 (42%), Gaps = 18/196 (9%)
Frame = +2
Query: 185 FVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFG 364
F Q L A D E + K+ + + ++ + LL H+ D+ + ++
Sbjct: 39 FKSFQQELDARHDKYERLVKLSRDITVESKRTIFLL---HRITSAPDMEEILTESEVKLD 95
Query: 365 TVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLESETLVTREAV------- 523
V+ + + + E ++FH LQ V +F ++++ +L++ + +
Sbjct: 96 GVRQKILQVAQELSVEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFS 155
Query: 524 TEILGIE--------PDREKG---FHLDVEDYLSGVLILASELSRLSVNSVTAGDYARPL 670
TE G E D++ G + DYL GV L EL R+ +NSV GD P
Sbjct: 156 TEDNGKENKTPSSDAQDKQCGTWRLRITPVDYLLGVADLTGELMRMCINSVGNGDIDTPF 215
Query: 671 HISTFINELDSGFRLL 718
+S F+ ++ GF +
Sbjct: 216 EVSQFLRQVYDGFSFI 231
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,148,492
Number of extensions: 848923
Number of successful extensions: 3021
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3020
Number of HSP's successfully gapped: 3
Length of query: 368
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 264
Effective length of database: 14,240,222
Effective search space: 3759418608
Effective search space used: 3759418608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008491
(1105 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540996.2| PREDICTED: similar to translin [Canis familiari... 430 e-120
Alignment gi|XP_536345.2| PREDICTED: similar to translin-associated facto... 51 2e-06
>ref|XP_540996.2| PREDICTED: similar to translin [Canis familiaris].
Length = 614
Score = 430 bits (1106), Expect = e-120
Identities = 222/247 (89%), Positives = 225/247 (91%)
Frame = +2
Query: 110 ERIWQATFAALADSRAAGAMSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTL 289
+R W A AALAD AAGAMSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTL
Sbjct: 368 DRAWAAALAALADRCAAGAMSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTL 427
Query: 290 LQGVHQGAGFQDIPKRCLKAREHFGTVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFL 469
LQGVHQGAGFQDIPKRCLKAREHFGTVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFL
Sbjct: 428 LQGVHQGAGFQDIPKRCLKAREHFGTVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFL 487
Query: 470 AAFVVYLESETLVTREAVTEILGIEPDREKGFHLDVEDYLSGVLILASELSRLSVNSVTA 649
AAFVVYLESETLVTREAVTEILGIEPDREKGFHLDVEDYLSGVLILASELSRLSVNSVTA
Sbjct: 488 AAFVVYLESETLVTREAVTEILGIEPDREKGFHLDVEDYLSGVLILASELSRLSVNSVTA 547
Query: 650 GDYARPLHISTFINELDSGFRLLNLKNDSLRKRYDGXXXXXXXXXXXXXXXSIRGFNKET 829
GDY+RPLHISTFINELDSGFRLLNLKNDSLRKRYDG SIRGFNKET
Sbjct: 548 GDYSRPLHISTFINELDSGFRLLNLKNDSLRKRYDGLKYDVKKVEEVVYDLSIRGFNKET 607
Query: 830 VAACSEK 850
AAC+EK
Sbjct: 608 AAACAEK 614
>ref|XP_536345.2| PREDICTED: similar to translin-associated factor X isoform 1 [Canis
familiaris].
Length = 290
Score = 51.2 bits (121), Expect = 2e-06
Identities = 45/196 (22%), Positives = 83/196 (42%), Gaps = 18/196 (9%)
Frame = +2
Query: 185 FVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFG 364
F Q L A D E + K+ + + ++ + LL H+ D+ + ++
Sbjct: 39 FKSFQQELDARHDKYERLVKLSRDITVESKRTIFLL---HRITSAPDMEEILTESEIKLD 95
Query: 365 TVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLESETLVTREAV------- 523
V+ + + + E ++FH LQ V +F ++++ +L++ + +
Sbjct: 96 GVRQKILQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFT 155
Query: 524 TEILGIE--------PDREKG---FHLDVEDYLSGVLILASELSRLSVNSVTAGDYARPL 670
TE G E D++ G + DYL GV L EL R+ +NSV GD P
Sbjct: 156 TEECGKENKTPSSDGQDKQFGTWRLKITPVDYLLGVADLTGELMRMCINSVGNGDIDTPF 215
Query: 671 HISTFINELDSGFRLL 718
+S F+ ++ GF +
Sbjct: 216 EVSQFLRQVYDGFSFI 231
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,706,540
Number of extensions: 870784
Number of successful extensions: 2938
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2937
Number of HSP's successfully gapped: 2
Length of query: 368
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 264
Effective length of database: 15,407,560
Effective search space: 4067595840
Effective search space used: 4067595840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008491
(1105 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003133342.2| PREDICTED: translin-like [Sus scrofa]. 297 6e-81
Alignment gi|NP_001230536.1| translin-associated protein X [Sus scrofa]. 51 1e-06
>ref|XP_003133342.2| PREDICTED: translin-like [Sus scrofa].
Length = 269
Score = 297 bits (761), Expect = 6e-81
Identities = 151/151 (100%), Positives = 151/151 (100%)
Frame = +2
Query: 167 MSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLK 346
MSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLK
Sbjct: 1 MSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLK 60
Query: 347 AREHFGTVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLESETLVTREAVT 526
AREHFGTVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLESETLVTREAVT
Sbjct: 61 AREHFGTVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLESETLVTREAVT 120
Query: 527 EILGIEPDREKGFHLDVEDYLSGVLILASEL 619
EILGIEPDREKGFHLDVEDYLSGVLILASEL
Sbjct: 121 EILGIEPDREKGFHLDVEDYLSGVLILASEL 151
>ref|NP_001230536.1| translin-associated protein X [Sus scrofa].
Length = 290
Score = 51.2 bits (121), Expect = 1e-06
Identities = 46/196 (23%), Positives = 83/196 (42%), Gaps = 18/196 (9%)
Frame = +2
Query: 185 FVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFG 364
F Q L A D E + K+ + + ++ + LL H+ D+ + ++
Sbjct: 39 FKSFQQELDARHDKYERLVKLSRDITVESKRTIFLL---HRITSAPDMEEILTESEIKLD 95
Query: 365 TVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLESETLVTREAV------- 523
V+ + + + E ++FH LQ V +F ++++ +L++ + +
Sbjct: 96 GVRQKILQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFS 155
Query: 524 TEILGIE--------PDREKG---FHLDVEDYLSGVLILASELSRLSVNSVTAGDYARPL 670
TE G E D++ G L DYL GV L EL R+ +NSV GD P
Sbjct: 156 TEENGKENKTPPSDAQDKQCGTWSLKLTPVDYLLGVADLTGELMRMCINSVGNGDIDTPF 215
Query: 671 HISTFINELDSGFRLL 718
+S F+ ++ GF +
Sbjct: 216 EVSQFLRQVYDGFSFI 231
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,248,528
Number of extensions: 542547
Number of successful extensions: 1849
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1848
Number of HSP's successfully gapped: 2
Length of query: 368
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 268
Effective length of database: 8,854,232
Effective search space: 2372934176
Effective search space used: 2372934176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008491
(1105 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035780.1| translin [Mus musculus]. 403 e-112
Alignment gi|NP_058605.1| translin-associated protein X [Mus musculus]. 52 8e-07
Alignment gi|XP_001472318.1| PREDICTED: translin-associated protein X iso... 52 8e-07
Alignment gi|XP_001472283.1| PREDICTED: translin-associated protein X iso... 52 8e-07
>ref|NP_035780.1| translin [Mus musculus].
Length = 228
Score = 403 bits (1036), Expect = e-112
Identities = 207/228 (90%), Positives = 209/228 (91%)
Frame = +2
Query: 167 MSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLK 346
MSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQG GFQDIPKRCLK
Sbjct: 1 MSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGTGFQDIPKRCLK 60
Query: 347 AREHFGTVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLESETLVTREAVT 526
AREHF TVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLE+ETLVTREAVT
Sbjct: 61 AREHFSTVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVT 120
Query: 527 EILGIEPDREKGFHLDVEDYLSGVLILASELSRLSVNSVTAGDYARPLHISTFINELDSG 706
EILGIEPDREKGFHLDVEDYLSGVLILASELSRLSVNSVTAGDY+RPLHISTFINELDSG
Sbjct: 121 EILGIEPDREKGFHLDVEDYLSGVLILASELSRLSVNSVTAGDYSRPLHISTFINELDSG 180
Query: 707 FRLLNLKNDSLRKRYDGXXXXXXXXXXXXXXXSIRGFNKETVAACSEK 850
FRLLNLKNDSLRKRYDG SIRGFNKET AAC EK
Sbjct: 181 FRLLNLKNDSLRKRYDGLKYDVKKVEEVVYDLSIRGFNKETAAACGEK 228
>ref|NP_058605.1| translin-associated protein X [Mus musculus].
Length = 290
Score = 52.0 bits (123), Expect = 8e-07
Identities = 44/196 (22%), Positives = 81/196 (41%), Gaps = 18/196 (9%)
Frame = +2
Query: 185 FVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFG 364
F Q L A D E + K+ + + ++ + LL H+ D+ + ++
Sbjct: 39 FKSFQQELDARHDKYERLVKLSRDITVESKRTIFLL---HRITSAPDMEEILTESESKLD 95
Query: 365 TVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLESETLVTREAVTEILGIE 544
V+ + + + E ++FH LQ V +F ++++ +L++ E + + L
Sbjct: 96 GVRQKILQVAQELSGEDMHQFHRAVTTGLQEYVEAVSFQHFIKTRSLISMEEINKQLTFT 155
Query: 545 PD-------------REKGF-----HLDVEDYLSGVLILASELSRLSVNSVTAGDYARPL 670
+ +EK L DYL GV L EL R+ +NSV GD P
Sbjct: 156 AEDSGKESKTPPAEGQEKQLVTWRLKLTPVDYLLGVADLTGELMRMCINSVGNGDIDTPF 215
Query: 671 HISTFINELDSGFRLL 718
+S F+ ++ GF +
Sbjct: 216 EVSQFLRQVYDGFSFI 231
>ref|XP_001472318.1| PREDICTED: translin-associated protein X isoform 2 [Mus musculus].
Length = 290
Score = 52.0 bits (123), Expect = 8e-07
Identities = 44/196 (22%), Positives = 81/196 (41%), Gaps = 18/196 (9%)
Frame = +2
Query: 185 FVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFG 364
F Q L A D E + K+ + + ++ + LL H+ D+ + ++
Sbjct: 39 FKSFQQELDARHDKYERLVKLSRDITVESKRTIFLL---HRITSAPDMEEILTESESKLD 95
Query: 365 TVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLESETLVTREAVTEILGIE 544
V+ + + + E ++FH LQ V +F ++++ +L++ E + + L
Sbjct: 96 GVRQKILQVAQELSGEDMHQFHRAVTTGLQEYVEAVSFQHFIKTRSLISMEEINKQLTFT 155
Query: 545 PD-------------REKGF-----HLDVEDYLSGVLILASELSRLSVNSVTAGDYARPL 670
+ +EK L DYL GV L EL R+ +NSV GD P
Sbjct: 156 AEDSGKESKTPPAEGQEKQLVTWRLKLTPVDYLLGVADLTGELMRMCINSVGNGDIDTPF 215
Query: 671 HISTFINELDSGFRLL 718
+S F+ ++ GF +
Sbjct: 216 EVSQFLRQVYDGFSFI 231
>ref|XP_001472283.1| PREDICTED: translin-associated protein X isoform 1 [Mus musculus].
Length = 341
Score = 52.0 bits (123), Expect = 8e-07
Identities = 44/196 (22%), Positives = 81/196 (41%), Gaps = 18/196 (9%)
Frame = +2
Query: 185 FVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFG 364
F Q L A D E + K+ + + ++ + LL H+ D+ + ++
Sbjct: 90 FKSFQQELDARHDKYERLVKLSRDITVESKRTIFLL---HRITSAPDMEEILTESESKLD 146
Query: 365 TVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLESETLVTREAVTEILGIE 544
V+ + + + E ++FH LQ V +F ++++ +L++ E + + L
Sbjct: 147 GVRQKILQVAQELSGEDMHQFHRAVTTGLQEYVEAVSFQHFIKTRSLISMEEINKQLTFT 206
Query: 545 PD-------------REKGF-----HLDVEDYLSGVLILASELSRLSVNSVTAGDYARPL 670
+ +EK L DYL GV L EL R+ +NSV GD P
Sbjct: 207 AEDSGKESKTPPAEGQEKQLVTWRLKLTPVDYLLGVADLTGELMRMCINSVGNGDIDTPF 266
Query: 671 HISTFINELDSGFRLL 718
+S F+ ++ GF +
Sbjct: 267 EVSQFLRQVYDGFSFI 282
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,490,537
Number of extensions: 733560
Number of successful extensions: 2540
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2536
Number of HSP's successfully gapped: 4
Length of query: 368
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 265
Effective length of database: 12,523,851
Effective search space: 3318820515
Effective search space used: 3318820515
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008491
(1105 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004613.1| translin [Homo sapiens]. 406 e-113
Alignment gi|NP_005990.1| translin-associated protein X [Homo sapiens]. 51 2e-06
>ref|NP_004613.1| translin [Homo sapiens].
Length = 228
Score = 406 bits (1044), Expect = e-113
Identities = 209/228 (91%), Positives = 211/228 (92%)
Frame = +2
Query: 167 MSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLK 346
MSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLK
Sbjct: 1 MSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLK 60
Query: 347 AREHFGTVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLESETLVTREAVT 526
AREHFGTVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLE+ETLVTREAVT
Sbjct: 61 AREHFGTVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVT 120
Query: 527 EILGIEPDREKGFHLDVEDYLSGVLILASELSRLSVNSVTAGDYARPLHISTFINELDSG 706
EILGIEPDREKGFHLDVEDYLSGVLILASELSRLSVNSVTAGDY+RPLHISTFINELDSG
Sbjct: 121 EILGIEPDREKGFHLDVEDYLSGVLILASELSRLSVNSVTAGDYSRPLHISTFINELDSG 180
Query: 707 FRLLNLKNDSLRKRYDGXXXXXXXXXXXXXXXSIRGFNKETVAACSEK 850
FRLLNLKNDSLRKRYDG SIRGFNKET AAC EK
Sbjct: 181 FRLLNLKNDSLRKRYDGLKYDVKKVEEVVYDLSIRGFNKETAAACVEK 228
>ref|NP_005990.1| translin-associated protein X [Homo sapiens].
Length = 290
Score = 51.2 bits (121), Expect = 2e-06
Identities = 45/196 (22%), Positives = 82/196 (41%), Gaps = 18/196 (9%)
Frame = +2
Query: 185 FVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFG 364
F Q L A D E + K+ + + ++ + LL + +DI ++
Sbjct: 39 FKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDI---LTESEIKLD 95
Query: 365 TVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLESETLVTREAV------- 523
V+ + + + E ++FH LQ V +F ++++ +L++ + +
Sbjct: 96 GVRQKIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFT 155
Query: 524 TEILGIE--------PDREKG---FHLDVEDYLSGVLILASELSRLSVNSVTAGDYARPL 670
TE G E D++ G + DYL GV L EL R+ +NSV GD P
Sbjct: 156 TEDNGKENKTPSSDAQDKQFGTWRLRVTPVDYLLGVADLTGELMRMCINSVGNGDIDTPF 215
Query: 671 HISTFINELDSGFRLL 718
+S F+ ++ GF +
Sbjct: 216 EVSQFLRQVYDGFSFI 231
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,044,885
Number of extensions: 862080
Number of successful extensions: 3019
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3018
Number of HSP's successfully gapped: 2
Length of query: 368
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 264
Effective length of database: 14,868,908
Effective search space: 3925391712
Effective search space used: 3925391712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008491
(1105 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 900 0.0
>Sscrofa_Chr15
|| Length = 157681621
Score = 900 bits (454), Expect = 0.0
Identities = 473/478 (98%), Gaps = 1/478 (0%)
Strand = Plus / Minus
Query: 619 gtcgaggctgtcggtcaacagcgtgactgcaggagattacgcgaggcccctgcacatctc 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34672409 gtcgaggctgtcggtcaacagcgtgactgcaggagattacgcgaggcccctgcacatctc 34672350
Query: 679 caccttcatcaatgagctggattccggcttccgccttctcaacctcaaaaatgactccct 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34672349 caccttcatcaatgagctggattccggcttccgccttctcaacctcaaaaatgactccct 34672290
Query: 739 gcggaagcgctacgacggcctcaagtatgatgtgaagaaggtggaggaggtggtctatga 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34672289 gcggaagcgctacgacggcctcaagtatgatgtgaagaaggtggaggaggtggtctatga 34672230
Query: 799 tctctccatccgaggcttcaacaaggagacggtggcggcctgctcggagaagtaggaatc 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34672229 tctctccatccgaggcttcaacaaggagacggtggcggcctgctcggagaagtaggaatc 34672170
Query: 859 ccacctgcccgcctgccctggcaagctctgcacttgctgttcctaaccggttgtgtggtg 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34672169 ccacctgcccgcctgccctggcaagctctgcacttgctgttcctaaccggttgtgtggtg 34672110
Query: 919 tgtcagaagtgaaacacttttataggggtgaaaggatggcctttataaggacagatttct 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34672109 tgtcagaagtgaaacacttttataggggtgaaaggatggcctttataaggacagatttct 34672050
Query: 979 tgttgttttggtgaatttgctctgtaattcagtgtatttcaagtcttttcaaaactgtaa 1038
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 34672049 tgttgttttggtgaatttgctctgtaattcagtgtatttcagttctttccaaaactgtaa 34671990
Query: 1039 atgtcagtctcccggtaaagt-cttttcttgcttaccctgacgctgttgctggactga 1095
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 34671989 atgtcagtctcccggtaaagtccttttcttgcttaccctgacgctgttgctgtactga 34671932
Score = 462 bits (233), Expect = e-127
Identities = 233/233 (100%)
Strand = Plus / Plus
Query: 1 gagcgccgcgggcctgagaggaccccagcggcagtcttagtgcagggccgggtggacgcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34655316 gagcgccgcgggcctgagaggaccccagcggcagtcttagtgcagggccgggtggacgcg 34655375
Query: 61 gcggcggcggcggtagcgggccttgagactgactgccgtggttgttttggagcgcatttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34655376 gcggcggcggcggtagcgggccttgagactgactgccgtggttgttttggagcgcatttg 34655435
Query: 121 gcaggccaccttcgccgccctggctgacagtcgtgcggccggcgccatgtctgtgagcga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34655436 gcaggccaccttcgccgccctggctgacagtcgtgcggccggcgccatgtctgtgagcga 34655495
Query: 181 gatcttcgtggagctgcagggctttttggctgccgagcaggacatcagagagg 233
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34655496 gatcttcgtggagctgcagggctttttggctgccgagcaggacatcagagagg 34655548
Score = 238 bits (120), Expect = 5e-60
Identities = 123/124 (99%)
Strand = Plus / Plus
Query: 421 caggtttcatgaacactggaggttcgtgctgcagcgcttggtcttcttggcggccttcgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34659965 caggtttcatgaacactggaggttcgtgctgcagcgcttggtcttcttggcggccttcgt 34660024
Query: 481 tgtgtacttggaatcagaaaccctagtgactcgagaagcggttacagagatcctcggcat 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34660025 tgtgtacttggaatcagaaaccctagtgactcgagaagcggttacagagatcctcggcag 34660084
Query: 541 tgag 544
||||
Sbjct: 34660085 tgag 34660088
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 327 ttccaaagaggtgtttgaaagctcgagaacattttggtacagtaaaaacacatctaacgt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34658292 ttccaaagaggtgtttgaaagctcgagaacattttggtacagtaaaaacacatctaacgt 34658351
Query: 387 ctttgaagaccaagttccctgctgaacagtattacaggttt 427
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 34658352 ctttgaagaccaagttccctgctgaacagtattacaggttt 34658392
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 231 aggaaatccgaaaagttgtacagagtttagaacaaacagcccgagagattttaactctac 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34656966 aggaaatccgaaaagttgtacagagtttagaacaaacagcccgagagattttaactctac 34657025
Query: 291 tccaaggggtccatcagggtgctgggtttcaggaca 326
||||||||||||||||||||||||||||||||||||
Sbjct: 34657026 tccaaggggtccatcagggtgctgggtttcaggaca 34657061
Score = 159 bits (80), Expect = 4e-36
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 540 ttgagccagatcgggagaagggatttcatctggatgtagaagattacctctcaggagttc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34661221 ttgagccagatcgggagaagggatttcatctggatgtagaagattacctctcaggagttc 34661280
Query: 600 taattcttgctagtgaactg 619
||||||||||||||||||||
Sbjct: 34661281 taattcttgctagtgaactg 34661300
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,694,592
Number of extensions: 404
Number of successful extensions: 404
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 403
Number of HSP's successfully gapped: 6
Length of query: 1105
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1084
Effective length of database: 2,808,413,156
Effective search space: 3044319861104
Effective search space used: 3044319861104
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)