Animal-Genome cDNA 20110601C-008560


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008560
         (1025 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001030540.1| glypican-3 [Bos taurus].                          577   e-165
Alignment   gi|XP_002707166.1| PREDICTED: glypican 3-like [Bos taurus].          371   e-103
Alignment   gi|NP_001095540.1| glypican-5 [Bos taurus].                          302   4e-82
Alignment   gi|NP_001192713.1| glypican-4 [Bos taurus].                          134   1e-31
Alignment   gi|XP_002699601.1| PREDICTED: glypican 4 [Bos taurus].               134   1e-31
Alignment   gi|NP_001039701.1| glypican-1 [Bos taurus].                          117   1e-26
Alignment   gi|XP_002698257.1| PREDICTED: glypican 2 [Bos taurus].                97   2e-20
Alignment   gi|NP_001180109.1| glypican-2 [Bos taurus].                           94   1e-19

>ref|NP_001030540.1| glypican-3 [Bos taurus].
          Length = 580

 Score =  577 bits (1488), Expect = e-165
 Identities = 285/293 (97%), Positives = 286/293 (97%), Gaps = 1/293 (0%)
 Frame = +1

Query: 142  MAGTVRTACLVVAMLLSLDCPGQAQXXXXX-DATCHQVRSFFQRLQPGLKWVPETPVPGS 318
            MAGTVRTACLVVAMLLSLDCPGQAQ      DATCHQVRSFFQRLQPGLKWVPETPVPGS
Sbjct: 1    MAGTVRTACLVVAMLLSLDCPGQAQPPPPPPDATCHQVRSFFQRLQPGLKWVPETPVPGS 60

Query: 319  DLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVR 498
            DLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVR
Sbjct: 61   DLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVR 120

Query: 499  HAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT 678
            HAKNYTNAMFKNNYPSLTPQAF+FVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT
Sbjct: 121  HAKNYTNAMFKNNYPSLTPQAFDFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT 180

Query: 679  QLMNPGLPESALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVI 858
            QLMNPGLPES LDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVI
Sbjct: 181  QLMNPGLPESTLDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVI 240

Query: 859  NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID 1017
            NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID
Sbjct: 241  NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID 293


>ref|XP_002707166.1| PREDICTED: glypican 3-like [Bos taurus].
          Length = 478

 Score =  371 bits (952), Expect = e-103
 Identities = 180/185 (97%), Positives = 181/185 (97%)
 Frame = +1

Query: 463  AVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVN 642
            A   EAFEIVVRHAKNYTNAMFKNNYPSLTPQAF+FVGEFFTDVSLYILGSDINVDDMVN
Sbjct: 7    AFILEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFDFVGEFFTDVSLYILGSDINVDDMVN 66

Query: 643  ELFDSLFPVIYTQLMNPGLPESALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRI 822
            ELFDSLFPVIYTQLMNPGLPES LDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRI
Sbjct: 67   ELFDSLFPVIYTQLMNPGLPESTLDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRI 126

Query: 823  FLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAG 1002
            FLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAG
Sbjct: 127  FLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAG 186

Query: 1003 VVEID 1017
            VVEID
Sbjct: 187  VVEID 191


>ref|NP_001095540.1| glypican-5 [Bos taurus].
          Length = 595

 Score =  302 bits (773), Expect = 4e-82
 Identities = 142/261 (54%), Positives = 193/261 (73%), Gaps = 1/261 (0%)
 Frame = +1

Query: 238  TCHQVRSFFQ-RLQPGLKWVPETPVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQL 414
            +C +VR  FQ RL   +K +P++P  G DLQVC  K P+CC+RKMEE+YQ+ AR +M+Q+
Sbjct: 29   SCEEVRKLFQGRLVGPVKGLPDSPRAGPDLQVCTAKKPSCCTRKMEERYQVVARQDMQQV 88

Query: 415  LQSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDV 594
            LQ++S  LKFLI +NAA FQE  E ++R A+NYT+ +F N Y ++  +A     E FTDV
Sbjct: 89   LQTSSSTLKFLISRNAAAFQETLETLIRQAENYTSILFCNTYRNMALEAAASTQELFTDV 148

Query: 595  SLYILGSDINVDDMVNELFDSLFPVIYTQLMNPGLPESALDINECLRGARRDLKVFGNFP 774
             LY+ G+D+N ++ VN  FDSLFP++Y  L+NPG+ +S+L+ +EC+R ARRD+  FGN P
Sbjct: 149  GLYLFGADVNPEEFVNRFFDSLFPLVYNHLINPGVTDSSLEYSECIRTARRDISPFGNIP 208

Query: 775  KLIMTQVSKSLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVK 954
            K ++ Q+ +SL  +R FLQALNLGIEVINTTDHL FSK+CGR L RM YC +CQGL + K
Sbjct: 209  KRVLGQMGRSLLPSRTFLQALNLGIEVINTTDHLHFSKECGRALLRMQYCPHCQGLALTK 268

Query: 955  PCGGYCNVVMQGCMAGVVEID 1017
            PC GYC  VM+GC+A V E++
Sbjct: 269  PCMGYCLNVMRGCLAHVAELN 289


>ref|NP_001192713.1| glypican-4 [Bos taurus].
          Length = 556

 Score =  134 bits (338), Expect = 1e-31
 Identities = 74/260 (28%), Positives = 136/260 (52%)
 Frame = +1

Query: 238  TCHQVRSFFQRLQPGLKWVPETPVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLL 417
            +C +VR  +          P   + G  L++CL +G TCCS++MEEKY L ++ + + ++
Sbjct: 29   SCSEVRRLYVSKGFDKNDAPMHEINGDHLKICL-QGYTCCSQEMEEKYSLQSKEDFKSVV 87

Query: 418  QSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVS 597
                  L+ +       F E F+ ++ +A+   N MF   Y  L  Q  E   + F ++ 
Sbjct: 88   SEQCNHLQAVFASRYKKFDEFFKELLENAEKSLNDMFVKTYGHLYMQNSELFKDLFEELK 147

Query: 598  LYILGSDINVDDMVNELFDSLFPVIYTQLMNPGLPESALDINECLRGARRDLKVFGNFPK 777
             Y +  ++N+++M+N+ +  L   ++ +L+N     +  +  EC+      LK FG+ P+
Sbjct: 148  RYYVAGNVNLEEMLNDFWARLLERMF-RLVNSQYHFTD-EYLECVSKYTEQLKPFGDVPR 205

Query: 778  LIMTQVSKSLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKP 957
             +  QV+++    R F Q L +  +V++    +  +  C   L +M YCS+CQGL+ VKP
Sbjct: 206  KLKLQVTRAFVAARTFAQGLAVARDVVSKVSVVNPTTQCTHALVKMMYCSHCQGLVTVKP 265

Query: 958  CGGYCNVVMQGCMAGVVEID 1017
            C  YC+ +M+GC+A   ++D
Sbjct: 266  CYNYCSNIMRGCLANQGDLD 285


>ref|XP_002699601.1| PREDICTED: glypican 4 [Bos taurus].
          Length = 556

 Score =  134 bits (338), Expect = 1e-31
 Identities = 74/260 (28%), Positives = 136/260 (52%)
 Frame = +1

Query: 238  TCHQVRSFFQRLQPGLKWVPETPVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLL 417
            +C +VR  +          P   + G  L++CL +G TCCS++MEEKY L ++ + + ++
Sbjct: 29   SCSEVRRLYVSKGFDKNDAPMHEINGDHLKICL-QGYTCCSQEMEEKYSLQSKEDFKSVV 87

Query: 418  QSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVS 597
                  L+ +       F E F+ ++ +A+   N MF   Y  L  Q  E   + F ++ 
Sbjct: 88   SEQCNHLQAVFASRYKKFDEFFKELLENAEKSLNDMFVKTYGHLYMQNSELFKDLFEELK 147

Query: 598  LYILGSDINVDDMVNELFDSLFPVIYTQLMNPGLPESALDINECLRGARRDLKVFGNFPK 777
             Y +  ++N+++M+N+ +  L   ++ +L+N     +  +  EC+      LK FG+ P+
Sbjct: 148  RYYVAGNVNLEEMLNDFWARLLERMF-RLVNSQYHFTD-EYLECVSKYTEQLKPFGDVPR 205

Query: 778  LIMTQVSKSLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKP 957
             +  QV+++    R F Q L +  +V++    +  +  C   L +M YCS+CQGL+ VKP
Sbjct: 206  KLKLQVTRAFVAARTFAQGLAVARDVVSKVSVVNPTTQCTHALVKMMYCSHCQGLVTVKP 265

Query: 958  CGGYCNVVMQGCMAGVVEID 1017
            C  YC+ +M+GC+A   ++D
Sbjct: 266  CYNYCSNIMRGCLANQGDLD 285


>ref|NP_001039701.1| glypican-1 [Bos taurus].
          Length = 559

 Score =  117 bits (294), Expect = 1e-26
 Identities = 66/265 (24%), Positives = 131/265 (49%), Gaps = 4/265 (1%)
 Frame = +1

Query: 238  TCHQVRSFFQRLQPGLKWVPETPVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLL 417
            +C +VR  +      L  VP+  + G  L++C P+G TCC+ +MEE     +R  +E  L
Sbjct: 31   SCGEVRQIYGAKGFSLSDVPQAEISGEHLRIC-PQGYTCCTSEMEENLANRSRAELETAL 89

Query: 418  QSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVS 597
               +  L+  +      F + F+ ++  ++      F   +  L  Q  +   + + ++ 
Sbjct: 90   LEGTRALQATLAAQQRGFDDHFQRLLNDSERALQEAFPGAFGELYTQNAKAFRDLYAELR 149

Query: 598  LYILGSDINVDDMVNE----LFDSLFPVIYTQLMNPGLPESALDINECLRGARRDLKVFG 765
            LY  G+++++ + + E    L + LF  ++ QL+   LP+  LD   CL      L+ FG
Sbjct: 150  LYYGGANLHLQETLAEFWARLLERLFRQLHPQLL---LPDDYLD---CLGKQAEPLRPFG 203

Query: 766  NFPKLIMTQVSKSLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLM 945
              P+ +  + +++    R F+Q L +  +V+     +  S +C R + ++ YC++C G+ 
Sbjct: 204  EAPRELRLRATRAFVAARTFVQGLGVAGDVVRKVAKVPLSPECSRAVMKLVYCAHCLGVP 263

Query: 946  MVKPCGGYCNVVMQGCMAGVVEIDS 1020
              +PC  YC  V++GC+A   ++D+
Sbjct: 264  GARPCPDYCRNVLKGCLANQADLDA 288


>ref|XP_002698257.1| PREDICTED: glypican 2 [Bos taurus].
          Length = 578

 Score = 97.1 bits (240), Expect = 2e-20
 Identities = 67/282 (23%), Positives = 124/282 (43%), Gaps = 7/282 (2%)
 Frame = +1

Query: 172 VVAMLLSLDCPGQAQXXXXX---DATCHQVRSFFQRLQPGLKWVPETPVPGSDLQVCLPK 342
           ++ +LL L CPG             +C + R         L  +P   + G  L++C P+
Sbjct: 7   LLLLLLPL-CPGPGPGPGIEAKVTRSCTETRQILGARGYSLSVLPPALISGEHLRIC-PQ 64

Query: 343 GPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNA 522
             TCCS ++E++           L++     L   +      F E F  ++  A++  + 
Sbjct: 65  EYTCCSSEIEQRLTWETEATFRGLVEENGSFLVHTLAARHRKFDEVFREMLSSAEHSLSM 124

Query: 523 MFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMV----NELFDSLFPVIYTQLMN 690
           +F  ++  L  Q        F+ +  Y   S   +DD +     +L + +FP+++ Q + 
Sbjct: 125 LFHRSFGRLYTQHTPLFSGLFSRLRDYYERSGEGLDDALVDFWAQLLEKMFPLLHPQYIF 184

Query: 691 PGLPESALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVINTTD 870
              P+    +      A   LK FG+ P+ +  Q++++L   R F+Q L  G  V++ T 
Sbjct: 185 S--PDYLFCLTRLASSADDSLKPFGDSPRRLRLQITRALVAARAFVQGLETGRNVVSETL 242

Query: 871 HLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCM 996
            +  S+ C R + R+  C  C+G+  + PC G+C  V  GC+
Sbjct: 243 KMPLSEGCKRAVMRLTGCPLCRGVPSLPPCRGFCLNVAYGCI 284


>ref|NP_001180109.1| glypican-2 [Bos taurus].
          Length = 578

 Score = 94.4 bits (233), Expect = 1e-19
 Identities = 66/282 (23%), Positives = 124/282 (43%), Gaps = 7/282 (2%)
 Frame = +1

Query: 172 VVAMLLSLDCPGQAQXXXXX---DATCHQVRSFFQRLQPGLKWVPETPVPGSDLQVCLPK 342
           ++ +LL L CPG             +C + R         L  +P   + G  L++C P+
Sbjct: 7   LLLLLLPL-CPGPGPGPGIEAKVTRSCTETRQILGARGYSLSVLPPALISGEHLRIC-PQ 64

Query: 343 GPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNA 522
             TCCS ++E++           L++     L   +      F+  F  ++  A++  + 
Sbjct: 65  EYTCCSSEIEQRLTWETEATFRGLVEENGSFLVHTLAARHRKFERFFGEMLSSAEHSLSM 124

Query: 523 MFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMV----NELFDSLFPVIYTQLMN 690
           +F  ++  L  Q        F+ +  Y   S   +DD +     +L + +FP+++ Q + 
Sbjct: 125 LFHRSFGRLYTQHTPLFSGLFSRLRDYYERSGEGLDDALVDFWAQLLEKMFPLLHPQYIF 184

Query: 691 PGLPESALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVINTTD 870
              P+    +      A   LK FG+ P+ +  Q++++L   R F+Q L  G  V++ T 
Sbjct: 185 S--PDYLFCLTRLASSADDSLKPFGDSPRRLRLQITRALVAARAFVQGLETGRNVVSETL 242

Query: 871 HLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCM 996
            +  S+ C R + R+  C  C+G+  + PC G+C  V  GC+
Sbjct: 243 KMPLSEGCKRAVMRLTGCPLCRGVPSLPPCRGFCLNVAYGCI 284


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,863,279
Number of extensions: 1008344
Number of successful extensions: 2976
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 2966
Number of HSP's successfully gapped: 8
Length of query: 341
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 238
Effective length of database: 14,273,310
Effective search space: 3397047780
Effective search space used: 3397047780
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008560
         (1025 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_538178.2| PREDICTED: similar to Glypican-3 precursor (Int...   577   e-165
Alignment   gi|XP_542637.2| PREDICTED: similar to Glypican-5 precursor [Can...   305   4e-83
Alignment   gi|XP_549265.2| PREDICTED: similar to glypican 4 [Canis familia...   132   5e-31
Alignment   gi|XP_534162.2| PREDICTED: similar to glypican 6 precursor [Can...   118   1e-26
Alignment   gi|XP_543322.2| PREDICTED: similar to glypican 1 precursor [Can...   113   3e-25
Alignment   gi|XP_850687.1| PREDICTED: similar to glypican 2 [Canis familia...    96   4e-20

>ref|XP_538178.2| PREDICTED: similar to Glypican-3 precursor (Intestinal protein OCI-5)
            (GTR2-2) (MXR7) [Canis familiaris].
          Length = 580

 Score =  577 bits (1486), Expect = e-165
 Identities = 285/293 (97%), Positives = 287/293 (97%), Gaps = 1/293 (0%)
 Frame = +1

Query: 142  MAGTVRTACLVVAMLLSLDCPGQAQXXXXX-DATCHQVRSFFQRLQPGLKWVPETPVPGS 318
            MAGTVRTACLVVAMLLSLDCPGQAQ      DATCHQVRSFFQRLQPGLKWVPETPVPGS
Sbjct: 1    MAGTVRTACLVVAMLLSLDCPGQAQPPPPPPDATCHQVRSFFQRLQPGLKWVPETPVPGS 60

Query: 319  DLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVR 498
            DLQVCLPKGPTCCSRKMEEKYQLTARLN+EQLLQSASMELKFLIIQNAAVFQEAFEIVVR
Sbjct: 61   DLQVCLPKGPTCCSRKMEEKYQLTARLNIEQLLQSASMELKFLIIQNAAVFQEAFEIVVR 120

Query: 499  HAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT 678
            HAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT
Sbjct: 121  HAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT 180

Query: 679  QLMNPGLPESALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVI 858
            QLMNPGLPESALDINECLRGARRDLKVFG+FPKLIMTQVSKSLQVTRIFLQALNLGIEVI
Sbjct: 181  QLMNPGLPESALDINECLRGARRDLKVFGSFPKLIMTQVSKSLQVTRIFLQALNLGIEVI 240

Query: 859  NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID 1017
            NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID
Sbjct: 241  NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID 293


>ref|XP_542637.2| PREDICTED: similar to Glypican-5 precursor [Canis familiaris].
          Length = 1141

 Score =  305 bits (782), Expect = 4e-83
 Identities = 144/261 (55%), Positives = 196/261 (75%), Gaps = 1/261 (0%)
 Frame = +1

Query: 238  TCHQVRSFFQ-RLQPGLKWVPETPVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQL 414
            +C +VR  FQ RL   +K +P++P  GSDLQVC+ K PTCCSR+MEE+YQ+ AR +M+Q+
Sbjct: 565  SCEEVRKLFQWRLVGAVKGLPDSPRAGSDLQVCVSKKPTCCSRRMEERYQIAARQDMQQV 624

Query: 415  LQSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDV 594
            LQ++S  LKFLI +NAA FQE  E ++R A+NYT+ +F N Y ++  +A   V E FTDV
Sbjct: 625  LQTSSSTLKFLISRNAAAFQETLETLIRQAENYTSILFCNTYRNMALEATASVQELFTDV 684

Query: 595  SLYILGSDINVDDMVNELFDSLFPVIYTQLMNPGLPESALDINECLRGARRDLKVFGNFP 774
             LY+ G+DIN D+ VN  FDSLFP++Y  L+NPG+ +S+L+ +EC+R ARRD++ FGN P
Sbjct: 685  GLYLFGADINPDEFVNRFFDSLFPLVYNHLINPGVTDSSLEYSECIRMARRDVRPFGNIP 744

Query: 775  KLIMTQVSKSLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVK 954
            K +M Q+ +SL  +R FLQALNLGIEVINTTDHL FSK+C + L RM YC +CQGL++ K
Sbjct: 745  KRVMGQMGRSLLPSRTFLQALNLGIEVINTTDHLHFSKECSKALLRMQYCPHCQGLILSK 804

Query: 955  PCGGYCNVVMQGCMAGVVEID 1017
            PC GYC  V++GC+A   E++
Sbjct: 805  PCMGYCLNVVRGCLAHTAELN 825


>ref|XP_549265.2| PREDICTED: similar to glypican 4 [Canis familiaris].
          Length = 556

 Score =  132 bits (332), Expect = 5e-31
 Identities = 73/260 (28%), Positives = 135/260 (51%)
 Frame = +1

Query: 238  TCHQVRSFFQRLQPGLKWVPETPVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLL 417
            +C +VR  +          P   + G  L++C P+G TCCS++MEEKY L ++ + + ++
Sbjct: 29   SCSEVRRLYVSKGFNKNDAPTHEINGDHLKIC-PQGYTCCSQEMEEKYSLQSKDDFKSVV 87

Query: 418  QSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVS 597
                  L+ +       F E F+ ++ +A+   N MF   Y  L  Q  E   + F ++ 
Sbjct: 88   SEQCNHLQAIFASRYKKFDEFFKELLENAEKSLNDMFVKTYGRLYMQNSELFKDLFGELK 147

Query: 598  LYILGSDINVDDMVNELFDSLFPVIYTQLMNPGLPESALDINECLRGARRDLKVFGNFPK 777
             Y +   +N+++M+++ +  L   ++ +L+N     +  +  EC+      LK FG+ P+
Sbjct: 148  RYYVAGSVNLEEMLSDFWARLLERMF-RLVNSQYHFTD-EYLECVSKYTEQLKPFGDVPR 205

Query: 778  LIMTQVSKSLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKP 957
             +  QV+++    R F Q L +  +V++    +  +  C   L +M YCS+CQGL+ VKP
Sbjct: 206  KLKLQVTRAFVAARTFAQGLAVARDVVSKVSVVNPTAQCTHALLKMIYCSHCQGLVNVKP 265

Query: 958  CGGYCNVVMQGCMAGVVEID 1017
            C  YC+ +M+GC+A   ++D
Sbjct: 266  CYNYCSNIMRGCLANQGDLD 285


>ref|XP_534162.2| PREDICTED: similar to glypican 6 precursor [Canis familiaris].
          Length = 484

 Score =  118 bits (295), Expect = 1e-26
 Identities = 69/217 (31%), Positives = 114/217 (52%)
 Frame = +1

Query: 370  EEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSL 549
            +EKY+       ++ L  + +   FL++     F E F  ++ +A+   N MF   Y  L
Sbjct: 6    KEKYERFVNRLEQKFLSISPIYDCFLVL-----FAEFFRELLENAEKSLNDMFVRTYGML 60

Query: 550  TPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYTQLMNPGLPESALDINEC 729
              Q  E   + FT++  Y  G ++N+++M+N+ +  L   ++ QL+NP    S  D  EC
Sbjct: 61   YMQNSEVFQDLFTELKRYYTGGNVNLEEMLNDFWARLLERMF-QLINPQYHFSE-DYLEC 118

Query: 730  LRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLT 909
            +      LK FG+ P+ +  QV+++    R F+Q L +G EV N    +  +  C R L 
Sbjct: 119  VSKYTDQLKPFGDVPRKLKIQVTRAFIAARTFVQGLTVGREVANRVSKVSPTPGCIRALM 178

Query: 910  RMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEIDS 1020
            +M YC YC+GL  V+PC  YC  VM+GC+A   ++D+
Sbjct: 179  KMLYCPYCRGLPSVRPCNNYCLNVMKGCLANQADLDT 215


>ref|XP_543322.2| PREDICTED: similar to glypican 1 precursor [Canis familiaris].
          Length = 908

 Score =  113 bits (282), Expect = 3e-25
 Identities = 64/253 (25%), Positives = 127/253 (50%), Gaps = 5/253 (1%)
 Frame = +1

Query: 277  PGLKWVPETPVP-GSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLII 453
            PG     + P+P G  L++C P+G TCC+ +MEE     +R  +E  L  ++  L+  + 
Sbjct: 137  PGRPRSSQQPLPTGEHLRIC-PQGYTCCTSEMEENLANRSRAELETALLDSAHALQATLA 195

Query: 454  QNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDD 633
                 F + F+ ++  ++      F   +  L  Q  +   + + ++ LY  G++++++D
Sbjct: 196  TQLQSFDDHFQQLLNESERALQDAFPGAFGELYTQGAKAFRDLYAELRLYYRGANLHLED 255

Query: 634  MVNE----LFDSLFPVIYTQLMNPGLPESALDINECLRGARRDLKVFGNFPKLIMTQVSK 801
             + E    L + LF  ++ QL+   LP+  LD   CL      L+ FG  P+ +  + ++
Sbjct: 256  TLAEFWARLLERLFRQLHPQLL---LPDDYLD---CLGKQADALRPFGEAPRELRLRATR 309

Query: 802  SLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVV 981
            +    R F+Q L +  +V+     +    +C R + ++ YC++C G+   +PC  YC  V
Sbjct: 310  AFVAARAFVQGLGVAGDVVRKVAQVPLGPECSRAVMKLAYCAHCLGVPGARPCPDYCRNV 369

Query: 982  MQGCMAGVVEIDS 1020
            ++GC+A   ++D+
Sbjct: 370  LKGCLANQADLDA 382


>ref|XP_850687.1| PREDICTED: similar to glypican 2 [Canis familiaris].
          Length = 607

 Score = 96.3 bits (238), Expect = 4e-20
 Identities = 67/282 (23%), Positives = 124/282 (43%), Gaps = 7/282 (2%)
 Frame = +1

Query: 172 VVAMLLSLDCPGQAQXXXXX---DATCHQVRSFFQRLQPGLKWVPETPVPGSDLQVCLPK 342
           ++ +LLSL CPG             +C + R         L  +P   + G  L++C P+
Sbjct: 36  LLLLLLSL-CPGPGPGLGSEAKVTRSCIETRQVLGARGYSLSLLPPALISGEHLRIC-PQ 93

Query: 343 GPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNA 522
             TCCS ++E++           L++     L   +      F E F  ++  +++    
Sbjct: 94  EYTCCSSEIEQRLTWDTEATFRGLVEENGSFLVHTLASRHRKFDEIFREMLLSSEHSLAL 153

Query: 523 MFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMV----NELFDSLFPVIYTQLMN 690
           +F  ++  L  Q        F+ +  Y   S   +DD +     +L + LFP+++ Q + 
Sbjct: 154 LFHRSFGHLYSQHAPVFSGLFSRLRDYYERSGEGLDDALVDFWAQLLERLFPLLHPQYIF 213

Query: 691 PGLPESALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVINTTD 870
              P+    +      A   LK FG+ P+ +  Q++++L   R F+Q L  G +V++   
Sbjct: 214 S--PDYLFCLTRLASSADDSLKPFGDIPRRLYLQITRALVAARAFIQGLETGRDVVSEAL 271

Query: 871 HLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCM 996
            +  S+ C R + R+  C  C+G+  + PC G+C  V  GC+
Sbjct: 272 KVPMSEGCKRAVMRLTGCPLCRGVPSLPPCRGFCFNVANGCL 313


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,448,588
Number of extensions: 1032965
Number of successful extensions: 3056
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3052
Number of HSP's successfully gapped: 6
Length of query: 341
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 238
Effective length of database: 15,440,896
Effective search space: 3674933248
Effective search space used: 3674933248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008560
         (1025 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003135447.2| PREDICTED: glypican-3-like [Sus scrofa].          585   e-167
Alignment   gi|XP_001925506.3| PREDICTED: glypican-4 [Sus scrofa].               133   1e-31
Alignment   gi|XP_003124388.1| PREDICTED: glypican-2 [Sus scrofa].                96   2e-20
Alignment   gi|XP_003359760.1| PREDICTED: glypican-1-like [Sus scrofa].           73   3e-13

>ref|XP_003135447.2| PREDICTED: glypican-3-like [Sus scrofa].
          Length = 585

 Score =  585 bits (1507), Expect = e-167
 Identities = 287/292 (98%), Positives = 287/292 (98%)
 Frame = +1

Query: 142  MAGTVRTACLVVAMLLSLDCPGQAQXXXXXDATCHQVRSFFQRLQPGLKWVPETPVPGSD 321
            MAGTVRTACLVVAMLLSLDCPGQAQ     DATCHQVRSFFQRLQPGLKWVPETPVPGSD
Sbjct: 1    MAGTVRTACLVVAMLLSLDCPGQAQPPPPPDATCHQVRSFFQRLQPGLKWVPETPVPGSD 60

Query: 322  LQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVRH 501
            LQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVRH
Sbjct: 61   LQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVRH 120

Query: 502  AKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYTQ 681
            AKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYTQ
Sbjct: 121  AKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYTQ 180

Query: 682  LMNPGLPESALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVIN 861
            LMNPGLPESALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVIN
Sbjct: 181  LMNPGLPESALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVIN 240

Query: 862  TTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID 1017
            TTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID
Sbjct: 241  TTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID 292


>ref|XP_001925506.3| PREDICTED: glypican-4 [Sus scrofa].
          Length = 514

 Score =  133 bits (335), Expect = 1e-31
 Identities = 71/241 (29%), Positives = 130/241 (53%)
 Frame = +1

Query: 295  PETPVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQ 474
            P   +PG  L++C P+G TCCS++MEEKY L ++ + + ++      L+ +       F 
Sbjct: 6    PTFSLPGDHLKIC-PQGYTCCSQEMEEKYSLQSKDDFKSVVSEQCNHLQAVFASRYKKFD 64

Query: 475  EAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFD 654
            E F+ ++ +A+   N MF   Y  L  Q  E   + F ++  Y +  ++N+++M+ + + 
Sbjct: 65   EFFKELLENAEKSLNDMFVKTYGHLYMQNSELFKDLFEELKRYYVAGNVNLEEMLQDFWA 124

Query: 655  SLFPVIYTQLMNPGLPESALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQA 834
             L   ++ +L+N     +  +  EC+      LK FG+ P+ +  QV+++    R F Q 
Sbjct: 125  RLLERMF-RLVNSQYHFTD-EYLECVSKYTEQLKPFGDVPRKLKLQVTRAFVAARTFAQG 182

Query: 835  LNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEI 1014
            L +  +V++    +  +  C   L +M YCS+CQGL+ VKPC  YC+ +M+GC+A   ++
Sbjct: 183  LAVARDVVSKVSVVNPTAQCTHALLKMIYCSHCQGLVTVKPCYNYCSNIMRGCLANQGDL 242

Query: 1015 D 1017
            D
Sbjct: 243  D 243


>ref|XP_003124388.1| PREDICTED: glypican-2 [Sus scrofa].
          Length = 577

 Score = 96.3 bits (238), Expect = 2e-20
 Identities = 66/282 (23%), Positives = 124/282 (43%), Gaps = 7/282 (2%)
 Frame = +1

Query: 172 VVAMLLSLDCPGQAQXXXXX---DATCHQVRSFFQRLQPGLKWVPETPVPGSDLQVCLPK 342
           ++ +LL L CPG             +C + R         L  +P   + G  L++C P+
Sbjct: 7   LLLLLLPL-CPGPGPGPGIEAKVTRSCIETRQILGARGYSLSLLPPALISGEHLRIC-PQ 64

Query: 343 GPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNA 522
             TCCS ++E++           L++     L   +      F + F  ++  A++  + 
Sbjct: 65  EYTCCSSEIEQRLTWETETTFRGLVEENGSFLVHTLAARHRKFDDVFREMLSSAEHSLSL 124

Query: 523 MFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMV----NELFDSLFPVIYTQLMN 690
           +F  ++  L  Q        F+ +  Y   S   +DD +     +L + +FP+++ Q   
Sbjct: 125 LFHRSFGRLYAQHTLLFSGLFSRLRDYYERSGAGLDDALVDFWAQLLEKMFPLLHPQYTF 184

Query: 691 PGLPESALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVINTTD 870
              P+    +      A   LK FG+ P+ +  Q++++L   R F+Q L  G +V++ T 
Sbjct: 185 S--PDYLFCLTRLASSADDSLKPFGDSPRRLRLQITRALVAARAFVQGLETGRDVVSETL 242

Query: 871 HLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCM 996
            +  S+ C R + R+  C  C+G+  + PC G+C  V  GC+
Sbjct: 243 KMPMSEGCRRAVMRLTGCPLCRGVPSLPPCRGFCLNVAHGCI 284


>ref|XP_003359760.1| PREDICTED: glypican-1-like [Sus scrofa].
          Length = 329

 Score = 72.8 bits (177), Expect = 3e-13
 Identities = 48/201 (23%), Positives = 99/201 (49%), Gaps = 5/201 (2%)
 Frame = +1

Query: 313 GSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIV 492
           G  L++C P+G TCC+ +MEE     +R  +E  L  +S  L+  +      F + F+ +
Sbjct: 48  GEHLRIC-PQGYTCCTSEMEENLANRSRAELETALLDSSRALQATLTSQLRGFDDHFQRL 106

Query: 493 VRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNE----LFDSL 660
           +  ++      F   +  L  Q+ +   + + ++ LY  G+++++++ + E    L + L
Sbjct: 107 LNDSERTLQEAFPGAFGELYTQSAKAFRDLYAELRLYYRGANLHLEETLAEFWARLLERL 166

Query: 661 FPVIYTQLMNPGLPESALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALN 840
           F  ++ QL+   LP+  LD   CL      L+ FG  P+ +  + +++    R F+Q L 
Sbjct: 167 FRQLHPQLL---LPDDYLD---CLGKQAEALRPFGEAPRELRLRATRAFVAARAFVQGLG 220

Query: 841 LGIEVINTTDHLK-FSKDCGR 900
           +  +V+     ++ ++ D GR
Sbjct: 221 VAGDVVRKVSQVRPWAPDGGR 241


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,380,216
Number of extensions: 645820
Number of successful extensions: 1761
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1759
Number of HSP's successfully gapped: 4
Length of query: 341
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 241
Effective length of database: 8,854,232
Effective search space: 2133869912
Effective search space used: 2133869912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008560
         (1025 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_057906.2| glypican-3 precursor [Mus musculus].                 571   e-163
Alignment   gi|NP_780709.1| glypican-5 precursor [Mus musculus].                 297   8e-81
Alignment   gi|NP_001073313.1| glypican-6 isoform 1 [Mus musculus].              148   6e-36
Alignment   gi|NP_035951.1| glypican-6 isoform 2 [Mus musculus].                 148   6e-36
Alignment   gi|NP_032176.2| glypican-4 precursor [Mus musculus].                 130   2e-30
Alignment   gi|NP_057905.1| glypican-1 precursor [Mus musculus].                 123   2e-28
Alignment   gi|NP_766000.1| glypican-2 precursor [Mus musculus].                  96   5e-20

>ref|NP_057906.2| glypican-3 precursor [Mus musculus].
          Length = 579

 Score =  571 bits (1472), Expect = e-163
 Identities = 280/292 (95%), Positives = 283/292 (96%)
 Frame = +1

Query: 142  MAGTVRTACLVVAMLLSLDCPGQAQXXXXXDATCHQVRSFFQRLQPGLKWVPETPVPGSD 321
            MAGTVRTACL+VAMLL L C GQAQ     DATCHQVRSFFQRLQPGLKWVPETPVPGSD
Sbjct: 1    MAGTVRTACLLVAMLLGLGCLGQAQPPPPPDATCHQVRSFFQRLQPGLKWVPETPVPGSD 60

Query: 322  LQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVRH 501
            LQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVRH
Sbjct: 61   LQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVRH 120

Query: 502  AKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYTQ 681
            AKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYTQ
Sbjct: 121  AKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYTQ 180

Query: 682  LMNPGLPESALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVIN 861
            +MNPGLPES LDINECLRGARRDLKVFG+FPKLIMTQVSKSLQVTRIFLQALNLGIEVIN
Sbjct: 181  MMNPGLPESVLDINECLRGARRDLKVFGSFPKLIMTQVSKSLQVTRIFLQALNLGIEVIN 240

Query: 862  TTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID 1017
            TTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID
Sbjct: 241  TTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID 292


>ref|NP_780709.1| glypican-5 precursor [Mus musculus].
          Length = 572

 Score =  297 bits (761), Expect = 8e-81
 Identities = 139/261 (53%), Positives = 191/261 (73%), Gaps = 1/261 (0%)
 Frame = +1

Query: 238  TCHQVRSFFQ-RLQPGLKWVPETPVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQL 414
            +C +VR  FQ RL   +K +PE P  G DLQVCL K PTCC+RKMEE+YQ+ AR +++Q+
Sbjct: 29   SCEEVRKLFQWRLGGAVKGLPEAPRAGPDLQVCLSKNPTCCTRKMEERYQIAARQDLQQV 88

Query: 415  LQSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDV 594
            LQ++S  LK LI +NAA FQE  E ++R A+NYT+ +F N Y ++  +A   + EFFTDV
Sbjct: 89   LQTSSSTLKLLISRNAAAFQETLETLIRQAENYTSILFCNTYRNMALEAAASIQEFFTDV 148

Query: 595  SLYILGSDINVDDMVNELFDSLFPVIYTQLMNPGLPESALDINECLRGARRDLKVFGNFP 774
             LY+ G+D+N ++ VN  FDSLFP++Y  L+NPG+ +S+L  +EC+R AR+D+  FGN P
Sbjct: 149  GLYLFGADVNPEEFVNRFFDSLFPLVYNHLINPGVTDSSLQYSECIRMARQDVSPFGNIP 208

Query: 775  KLIMTQVSKSLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVK 954
            K +M Q+ +SL   R FLQALNLGIEVINTTDH+ FSK+C R L +M YC +CQ LM+ K
Sbjct: 209  KRVMGQMGRSLLPGRTFLQALNLGIEVINTTDHIHFSKECSRALLKMQYCPHCQSLMLSK 268

Query: 955  PCGGYCNVVMQGCMAGVVEID 1017
            PC GYC  V++GC+A + E++
Sbjct: 269  PCMGYCLNVIRGCLAHMTELN 289


>ref|NP_001073313.1| glypican-6 isoform 1 [Mus musculus].
          Length = 565

 Score =  148 bits (374), Expect = 6e-36
 Identities = 82/261 (31%), Positives = 137/261 (52%)
 Frame = +1

Query: 238  TCHQVRSFFQRLQPGLKWVPETPVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLL 417
            +C +VR  +      L  +P   + G  L++C P+  TCC+ +ME+K    ++L  E L+
Sbjct: 29   SCSEVRQAYGAKGFSLADIPYQEIAGEHLRIC-PQEYTCCTTEMEDKLSQQSKLEFENLV 87

Query: 418  QSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVS 597
            +  S  ++   +     F E F  ++ +A+   N MF   Y  L  Q  E   + FT++ 
Sbjct: 88   EETSHFVRTTFVSRHKKFDEFFRELLENAEKSLNDMFVRTYGMLYMQNSEVFQDLFTELK 147

Query: 598  LYILGSDINVDDMVNELFDSLFPVIYTQLMNPGLPESALDINECLRGARRDLKVFGNFPK 777
             Y  G ++N+++M+N+ +  L   ++ QL+NP    S  D  EC+      LK FG+ P+
Sbjct: 148  RYYTGGNVNLEEMLNDFWARLLERMF-QLINPQYHFSE-DYLECVSKYTDQLKPFGDVPR 205

Query: 778  LIMTQVSKSLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKP 957
             +  QV+++    R F+Q L +G EV N    +  +  C R L +M YC YC+GL  V+P
Sbjct: 206  KLKIQVTRAFIAARTFVQGLTVGREVANRVSKVSPTPGCIRALMKMLYCPYCRGLPTVRP 265

Query: 958  CGGYCNVVMQGCMAGVVEIDS 1020
            C  YC  VM+GC+A   ++D+
Sbjct: 266  CNNYCLNVMKGCLANQADLDT 286


>ref|NP_035951.1| glypican-6 isoform 2 [Mus musculus].
          Length = 555

 Score =  148 bits (374), Expect = 6e-36
 Identities = 82/261 (31%), Positives = 137/261 (52%)
 Frame = +1

Query: 238  TCHQVRSFFQRLQPGLKWVPETPVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLL 417
            +C +VR  +      L  +P   + G  L++C P+  TCC+ +ME+K    ++L  E L+
Sbjct: 29   SCSEVRQAYGAKGFSLADIPYQEIAGEHLRIC-PQEYTCCTTEMEDKLSQQSKLEFENLV 87

Query: 418  QSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVS 597
            +  S  ++   +     F E F  ++ +A+   N MF   Y  L  Q  E   + FT++ 
Sbjct: 88   EETSHFVRTTFVSRHKKFDEFFRELLENAEKSLNDMFVRTYGMLYMQNSEVFQDLFTELK 147

Query: 598  LYILGSDINVDDMVNELFDSLFPVIYTQLMNPGLPESALDINECLRGARRDLKVFGNFPK 777
             Y  G ++N+++M+N+ +  L   ++ QL+NP    S  D  EC+      LK FG+ P+
Sbjct: 148  RYYTGGNVNLEEMLNDFWARLLERMF-QLINPQYHFSE-DYLECVSKYTDQLKPFGDVPR 205

Query: 778  LIMTQVSKSLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKP 957
             +  QV+++    R F+Q L +G EV N    +  +  C R L +M YC YC+GL  V+P
Sbjct: 206  KLKIQVTRAFIAARTFVQGLTVGREVANRVSKVSPTPGCIRALMKMLYCPYCRGLPTVRP 265

Query: 958  CGGYCNVVMQGCMAGVVEIDS 1020
            C  YC  VM+GC+A   ++D+
Sbjct: 266  CNNYCLNVMKGCLANQADLDT 286


>ref|NP_032176.2| glypican-4 precursor [Mus musculus].
          Length = 557

 Score =  130 bits (327), Expect = 2e-30
 Identities = 72/260 (27%), Positives = 135/260 (51%)
 Frame = +1

Query: 238  TCHQVRSFFQRLQPGLKWVPETPVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLL 417
            +C +VR  +          P   + G  L++C P+  TCCS++MEEKY L ++ + + ++
Sbjct: 29   SCSEVRRLYVSKGFNKNDAPLYEINGDHLKIC-PQDYTCCSQEMEEKYSLQSKDDFKTVV 87

Query: 418  QSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVS 597
                  L+ +       F E F+ ++ +A+   N MF   Y  L  Q  E   + F ++ 
Sbjct: 88   SEQCNHLQAIFASRYKKFDEFFKELLENAEKSLNDMFVKTYGHLYMQNSELFKDLFVELK 147

Query: 598  LYILGSDINVDDMVNELFDSLFPVIYTQLMNPGLPESALDINECLRGARRDLKVFGNFPK 777
             Y +  ++N+++M+N+ +  L   ++ +L+N     +  +  EC+      LK FG+ P+
Sbjct: 148  RYYVAGNVNLEEMLNDFWARLLERMF-RLVNSQYHFTD-EYLECVSKYTEQLKPFGDVPR 205

Query: 778  LIMTQVSKSLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKP 957
             +  QV+++    R F Q L +  +V++    +  +  C   L +M YCS+C+GL+ VKP
Sbjct: 206  KLKLQVTRAFVAARTFAQGLAVARDVVSKVSVVNPTAQCTHALLKMIYCSHCRGLVTVKP 265

Query: 958  CGGYCNVVMQGCMAGVVEID 1017
            C  YC+ +M+GC+A   ++D
Sbjct: 266  CYNYCSNIMRGCLANQGDLD 285


>ref|NP_057905.1| glypican-1 precursor [Mus musculus].
          Length = 557

 Score =  123 bits (309), Expect = 2e-28
 Identities = 63/261 (24%), Positives = 131/261 (50%)
 Frame = +1

Query: 238  TCHQVRSFFQRLQPGLKWVPETPVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLL 417
            +C +VR  +      L  VP+  + G  L++C P+G TCC+ +MEE     +R+ +E  L
Sbjct: 31   SCSEVRQIYGAKGFSLSDVPQAEISGEHLRIC-PQGYTCCTSEMEENLANHSRMELESAL 89

Query: 418  QSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVS 597
              +S  L+  +        + F+ ++  ++      F   +  L  Q      + + ++ 
Sbjct: 90   HDSSRALQATLATQLHGIDDHFQRLLNDSERTLQEAFPGAFGDLYTQNTRAFRDLYAELR 149

Query: 598  LYILGSDINVDDMVNELFDSLFPVIYTQLMNPGLPESALDINECLRGARRDLKVFGNFPK 777
            LY  G+++++++ + E +  L   ++ QL    LP+  LD   CL      L+ FG+ P+
Sbjct: 150  LYYRGANLHLEETLAEFWARLLERLFKQLHPQLLPDDYLD---CLGKQAEALRPFGDAPR 206

Query: 778  LIMTQVSKSLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKP 957
             +  + +++    R F+Q L +  +V+     +  + +C R + ++ YC++C+G+   +P
Sbjct: 207  ELRLRATRAFVAARSFVQGLGVASDVVRKVAQVPLAPECSRAIMKLVYCAHCRGVPGARP 266

Query: 958  CGGYCNVVMQGCMAGVVEIDS 1020
            C  YC  V++GC+A   ++D+
Sbjct: 267  CPDYCRNVLKGCLANQADLDA 287


>ref|NP_766000.1| glypican-2 precursor [Mus musculus].
          Length = 579

 Score = 95.9 bits (237), Expect = 5e-20
 Identities = 64/258 (24%), Positives = 116/258 (44%), Gaps = 4/258 (1%)
 Frame = +1

Query: 238 TCHQVRSFFQRLQPGLKWVPETPVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLL 417
           +C + R         L  +P + + G  LQVC P+  TCCS + E+K    A +    L+
Sbjct: 31  SCAETRQVLGARGYSLNLIPPSLISGEHLQVC-PQEYTCCSSETEQKLIRDAEVTFRGLV 89

Query: 418 QSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVS 597
           + +   L   +      F E F  ++  +++    +F ++Y  L  Q        F+ + 
Sbjct: 90  EDSGSFLIHTLAARHRKFNEFFREMLSISQHSLAQLFSHSYGRLYSQHAVIFNSLFSGLR 149

Query: 598 LYILGSDINVDDMVNE----LFDSLFPVIYTQLMNPGLPESALDINECLRGARRDLKVFG 765
            Y   S   +DD + +    L +  FP+++ Q   P  P+  L +      A   L+ FG
Sbjct: 150 DYYEKSGEGLDDTLADFWAQLLERAFPLLHPQYSFP--PDFLLCLTRLTSTADGSLQPFG 207

Query: 766 NFPKLIMTQVSKSLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLM 945
           + P+ +  Q+S++L   R  +Q L  G  V++    +   + C + L R+  C  C+G+ 
Sbjct: 208 DSPRRLRLQISRALVAARALVQGLETGRNVVSEALKVPVLEGCRQALMRLIGCPLCRGVP 267

Query: 946 MVKPCGGYCNVVMQGCMA 999
            + PC G+C  V  GC++
Sbjct: 268 SLMPCRGFCLNVAHGCLS 285


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,813,187
Number of extensions: 852743
Number of successful extensions: 2352
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2345
Number of HSP's successfully gapped: 7
Length of query: 341
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 239
Effective length of database: 12,553,887
Effective search space: 3000378993
Effective search space used: 3000378993
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008560
         (1025 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001158089.1| glypican-3 isoform 1 precursor [Homo sapiens].    575   e-164
Alignment   gi|NP_004475.1| glypican-3 isoform 2 precursor [Homo sapiens].       575   e-164
Alignment   gi|NP_001158090.1| glypican-3 isoform 3 precursor [Homo sapiens].    534   e-152
Alignment   gi|NP_001158091.1| glypican-3 isoform 4 precursor [Homo sapiens].    431   e-121
Alignment   gi|NP_004457.1| glypican-5 precursor [Homo sapiens].                 298   4e-81
Alignment   gi|NP_005699.1| glypican-6 precursor [Homo sapiens].                 148   9e-36
Alignment   gi|NP_001439.2| glypican-4 precursor [Homo sapiens].                 132   5e-31
Alignment   gi|NP_002072.2| glypican-1 precursor [Homo sapiens].                 122   5e-28
Alignment   gi|NP_689955.1| glypican-2 precursor [Homo sapiens].                  95   1e-19

>ref|NP_001158089.1| glypican-3 isoform 1 precursor [Homo sapiens].
          Length = 603

 Score =  575 bits (1481), Expect = e-164
 Identities = 285/293 (97%), Positives = 286/293 (97%), Gaps = 1/293 (0%)
 Frame = +1

Query: 142  MAGTVRTACLVVAMLLSLDCPGQAQXXXXX-DATCHQVRSFFQRLQPGLKWVPETPVPGS 318
            MAGTVRTACLVVAMLLSLD PGQAQ      DATCHQVRSFFQRLQPGLKWVPETPVPGS
Sbjct: 1    MAGTVRTACLVVAMLLSLDFPGQAQPPPPPPDATCHQVRSFFQRLQPGLKWVPETPVPGS 60

Query: 319  DLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVR 498
            DLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVR
Sbjct: 61   DLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVR 120

Query: 499  HAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT 678
            HAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT
Sbjct: 121  HAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT 180

Query: 679  QLMNPGLPESALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVI 858
            QLMNPGLP+SALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVI
Sbjct: 181  QLMNPGLPDSALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVI 240

Query: 859  NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID 1017
            NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID
Sbjct: 241  NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID 293


>ref|NP_004475.1| glypican-3 isoform 2 precursor [Homo sapiens].
          Length = 580

 Score =  575 bits (1481), Expect = e-164
 Identities = 285/293 (97%), Positives = 286/293 (97%), Gaps = 1/293 (0%)
 Frame = +1

Query: 142  MAGTVRTACLVVAMLLSLDCPGQAQXXXXX-DATCHQVRSFFQRLQPGLKWVPETPVPGS 318
            MAGTVRTACLVVAMLLSLD PGQAQ      DATCHQVRSFFQRLQPGLKWVPETPVPGS
Sbjct: 1    MAGTVRTACLVVAMLLSLDFPGQAQPPPPPPDATCHQVRSFFQRLQPGLKWVPETPVPGS 60

Query: 319  DLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVR 498
            DLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVR
Sbjct: 61   DLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVR 120

Query: 499  HAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT 678
            HAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT
Sbjct: 121  HAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT 180

Query: 679  QLMNPGLPESALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVI 858
            QLMNPGLP+SALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVI
Sbjct: 181  QLMNPGLPDSALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVI 240

Query: 859  NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID 1017
            NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID
Sbjct: 241  NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID 293


>ref|NP_001158090.1| glypican-3 isoform 3 precursor [Homo sapiens].
          Length = 564

 Score =  534 bits (1375), Expect = e-152
 Identities = 268/293 (91%), Positives = 270/293 (92%), Gaps = 1/293 (0%)
 Frame = +1

Query: 142  MAGTVRTACLVVAMLLSLDCPGQAQXXXXX-DATCHQVRSFFQRLQPGLKWVPETPVPGS 318
            MAGTVRTACLVVAMLLSLD PGQAQ      DATCHQVRSFFQRLQPGLKWVPETPVPGS
Sbjct: 1    MAGTVRTACLVVAMLLSLDFPGQAQPPPPPPDATCHQVRSFFQRLQPGLKWVPETPVPGS 60

Query: 319  DLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVR 498
            DLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSA                +AFEIVVR
Sbjct: 61   DLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSA----------------KAFEIVVR 104

Query: 499  HAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT 678
            HAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT
Sbjct: 105  HAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT 164

Query: 679  QLMNPGLPESALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVI 858
            QLMNPGLP+SALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVI
Sbjct: 165  QLMNPGLPDSALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVI 224

Query: 859  NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID 1017
            NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID
Sbjct: 225  NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID 277


>ref|NP_001158091.1| glypican-3 isoform 4 precursor [Homo sapiens].
          Length = 526

 Score =  431 bits (1107), Expect = e-121
 Identities = 227/293 (77%), Positives = 229/293 (78%), Gaps = 1/293 (0%)
 Frame = +1

Query: 142  MAGTVRTACLVVAMLLSLDCPGQAQXXXXX-DATCHQVRSFFQRLQPGLKWVPETPVPGS 318
            MAGTVRTACLVVAMLLSLD PGQAQ      DATCHQVRSFFQRLQPGLKWV        
Sbjct: 1    MAGTVRTACLVVAMLLSLDFPGQAQPPPPPPDATCHQVRSFFQRLQPGLKWV-------- 52

Query: 319  DLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVR 498
                  P+ P                                          EAFEIVVR
Sbjct: 53   ------PETPV----------------------------------------PEAFEIVVR 66

Query: 499  HAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT 678
            HAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT
Sbjct: 67   HAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT 126

Query: 679  QLMNPGLPESALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVI 858
            QLMNPGLP+SALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVI
Sbjct: 127  QLMNPGLPDSALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVI 186

Query: 859  NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID 1017
            NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID
Sbjct: 187  NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID 239


>ref|NP_004457.1| glypican-5 precursor [Homo sapiens].
          Length = 572

 Score =  298 bits (764), Expect = 4e-81
 Identities = 139/261 (53%), Positives = 194/261 (74%), Gaps = 1/261 (0%)
 Frame = +1

Query: 238  TCHQVRSFFQ-RLQPGLKWVPETPVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQL 414
            TC +VR  FQ RL   ++ +P++P  G DLQVC+ K PTCC+RKMEE+YQ+ AR +M+Q 
Sbjct: 29   TCEEVRKLFQWRLLGAVRGLPDSPRAGPDLQVCISKKPTCCTRKMEERYQIAARQDMQQF 88

Query: 415  LQSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDV 594
            LQ++S  LKFLI +NAA FQE  E +++ A+NYT+ +F + Y ++  +A   V EFFTDV
Sbjct: 89   LQTSSSTLKFLISRNAAAFQETLETLIKQAENYTSILFCSTYRNMALEAAASVQEFFTDV 148

Query: 595  SLYILGSDINVDDMVNELFDSLFPVIYTQLMNPGLPESALDINECLRGARRDLKVFGNFP 774
             LY+ G+D+N ++ VN  FDSLFP++Y  L+NPG+ +S+L+ +EC+R ARRD+  FGN P
Sbjct: 149  GLYLFGADVNPEEFVNRFFDSLFPLVYNHLINPGVTDSSLEYSECIRMARRDVSPFGNIP 208

Query: 775  KLIMTQVSKSLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVK 954
            + +M Q+ +SL  +R FLQALNLGIEVINTTD+L FSK+C R L +M YC +CQGL + K
Sbjct: 209  QRVMGQMGRSLLPSRTFLQALNLGIEVINTTDYLHFSKECSRALLKMQYCPHCQGLALTK 268

Query: 955  PCGGYCNVVMQGCMAGVVEID 1017
            PC GYC  VM+GC+A + E++
Sbjct: 269  PCMGYCLNVMRGCLAHMAELN 289


>ref|NP_005699.1| glypican-6 precursor [Homo sapiens].
          Length = 555

 Score =  148 bits (373), Expect = 9e-36
 Identities = 82/261 (31%), Positives = 137/261 (52%)
 Frame = +1

Query: 238  TCHQVRSFFQRLQPGLKWVPETPVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLL 417
            +C +VR  +      L  +P   + G  L++C P+  TCC+ +ME+K    ++L  E L+
Sbjct: 29   SCGEVRQAYGAKGFSLADIPYQEIAGEHLRIC-PQEYTCCTTEMEDKLSQQSKLEFENLV 87

Query: 418  QSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVS 597
            +  S  ++   +     F E F  ++ +A+   N MF   Y  L  Q  E   + FT++ 
Sbjct: 88   EETSHFVRTTFVSRHKKFDEFFRELLENAEKSLNDMFVRTYGMLYMQNSEVFQDLFTELK 147

Query: 598  LYILGSDINVDDMVNELFDSLFPVIYTQLMNPGLPESALDINECLRGARRDLKVFGNFPK 777
             Y  G ++N+++M+N+ +  L   ++ QL+NP    S  D  EC+      LK FG+ P+
Sbjct: 148  RYYTGGNVNLEEMLNDFWARLLERMF-QLINPQYHFSE-DYLECVSKYTDQLKPFGDVPR 205

Query: 778  LIMTQVSKSLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKP 957
             +  QV+++    R F+Q L +G EV N    +  +  C R L +M YC YC+GL  V+P
Sbjct: 206  KLKIQVTRAFIAARTFVQGLTVGREVANRVSKVSPTPGCIRALMKMLYCPYCRGLPTVRP 265

Query: 958  CGGYCNVVMQGCMAGVVEIDS 1020
            C  YC  VM+GC+A   ++D+
Sbjct: 266  CNNYCLNVMKGCLANQADLDT 286


>ref|NP_001439.2| glypican-4 precursor [Homo sapiens].
          Length = 556

 Score =  132 bits (332), Expect = 5e-31
 Identities = 73/260 (28%), Positives = 136/260 (52%)
 Frame = +1

Query: 238  TCHQVRSFFQRLQPGLKWVPETPVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLL 417
            +C +VR  +          P   + G  L++C P+G TCCS++MEEKY L ++ + + ++
Sbjct: 29   SCSEVRRLYVSKGFNKNDAPLHEINGDHLKIC-PQGSTCCSQEMEEKYSLQSKDDFKSVV 87

Query: 418  QSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVS 597
                  L+ +       F E F+ ++ +A+   N MF   Y  L  Q  E   + F ++ 
Sbjct: 88   SEQCNHLQAVFASRYKKFDEFFKELLENAEKSLNDMFVKTYGHLYMQNSELFKDLFVELK 147

Query: 598  LYILGSDINVDDMVNELFDSLFPVIYTQLMNPGLPESALDINECLRGARRDLKVFGNFPK 777
             Y +  ++N+++M+N+ +  L   ++ +L+N     +  +  EC+      LK FG+ P+
Sbjct: 148  RYYVVGNVNLEEMLNDFWARLLERMF-RLVNSQYHFTD-EYLECVSKYTEQLKPFGDVPR 205

Query: 778  LIMTQVSKSLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKP 957
             +  QV+++    R F Q L +  +V++    +  +  C   L +M YCS+C+GL+ VKP
Sbjct: 206  KLKLQVTRAFVAARTFAQGLAVAGDVVSKVSVVNPTAQCTHALLKMIYCSHCRGLVTVKP 265

Query: 958  CGGYCNVVMQGCMAGVVEID 1017
            C  YC+ +M+GC+A   ++D
Sbjct: 266  CYNYCSNIMRGCLANQGDLD 285


>ref|NP_002072.2| glypican-1 precursor [Homo sapiens].
          Length = 558

 Score =  122 bits (306), Expect = 5e-28
 Identities = 66/265 (24%), Positives = 134/265 (50%), Gaps = 4/265 (1%)
 Frame = +1

Query: 238  TCHQVRSFFQRLQPGLKWVPETPVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLL 417
            +C +VR  +      L  VP+  + G  L++C P+G TCC+ +MEE     +   +E  L
Sbjct: 31   SCGEVRQIYGAKGFSLSDVPQAEISGEHLRIC-PQGYTCCTSEMEENLANRSHAELETAL 89

Query: 418  QSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVS 597
            + +S  L+ ++      F + F+ ++  ++    A F   +  L  Q      + ++++ 
Sbjct: 90   RDSSRVLQAMLATQLRSFDDHFQHLLNDSERTLQATFPGAFGELYTQNARAFRDLYSELR 149

Query: 598  LYILGSDINVDDMVNE----LFDSLFPVIYTQLMNPGLPESALDINECLRGARRDLKVFG 765
            LY  G+++++++ + E    L + LF  ++ QL+   LP+  LD   CL      L+ FG
Sbjct: 150  LYYRGANLHLEETLAEFWARLLERLFKQLHPQLL---LPDDYLD---CLGKQAEALRPFG 203

Query: 766  NFPKLIMTQVSKSLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLM 945
              P+ +  + +++    R F+Q L +  +V+     +    +C R + ++ YC++C G+ 
Sbjct: 204  EAPRELRLRATRAFVAARSFVQGLGVASDVVRKVAQVPLGPECSRAVMKLVYCAHCLGVP 263

Query: 946  MVKPCGGYCNVVMQGCMAGVVEIDS 1020
              +PC  YC  V++GC+A   ++D+
Sbjct: 264  GARPCPDYCRNVLKGCLANQADLDA 288


>ref|NP_689955.1| glypican-2 precursor [Homo sapiens].
          Length = 579

 Score = 94.7 bits (234), Expect = 1e-19
 Identities = 71/283 (25%), Positives = 127/283 (44%), Gaps = 7/283 (2%)
 Frame = +1

Query: 172 VVAMLLSLDCPGQAQXXXXX---DATCHQVRSFFQRLQPGLKWVPETPVPGSDLQVCLPK 342
           ++ +LL L CPG             +C + R         L  +P   + G  L+VC P+
Sbjct: 7   LLLLLLPL-CPGPGPGPGSEAKVTRSCAETRQVLGARGYSLNLIPPALISGEHLRVC-PQ 64

Query: 343 GPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNA 522
             TCCS + E++           L++ +   L   +      F E F  ++  A++    
Sbjct: 65  EYTCCSSETEQRLIRETEATFRGLVEDSGSFLVHTLAARHRKFDEFFLEMLSVAQHSLTQ 124

Query: 523 MFKNNYPSLTPQ-AFEFVGEFFTDVSLYIL---GSDINVDDMVNELFDSLFPVIYTQLMN 690
           +F ++Y  L  Q A  F G F      Y     G D  + D   +L + +FP+++ Q   
Sbjct: 125 LFSHSYGRLYAQHALIFNGLFSRLRDFYGESGEGLDDTLADFWAQLLERVFPLLHPQYSF 184

Query: 691 PGLPESALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVINTTD 870
           P  P+  L ++         L+ FG+ P+ +  Q++++L   R F+Q L  G  V++   
Sbjct: 185 P--PDYLLCLSRLASSTDGSLQPFGDSPRRLRLQITRTLVAARAFVQGLETGRNVVSEAL 242

Query: 871 HLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMA 999
            +  S+ C + L R+  C  C+G+  + PC G+C  V++GC++
Sbjct: 243 KVPVSEGCSQALMRLIGCPLCRGVPSLMPCQGFCLNVVRGCLS 285


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,793,306
Number of extensions: 1018961
Number of successful extensions: 2803
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2788
Number of HSP's successfully gapped: 10
Length of query: 341
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 238
Effective length of database: 14,901,872
Effective search space: 3546645536
Effective search space used: 3546645536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008560
         (1025 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_ChrX                                                         1072   0.0  

>Sscrofa_ChrX 
||          Length = 144288218

 Score = 1072 bits (541), Expect = 0.0
 Identities = 544/545 (99%)
 Strand = Plus / Minus

                                                                             
Query: 474       agaggcctttgaaatcgttgttcgccatgccaagaactacaccaacgccatgttcaagaa 533
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125828526 agaggcctttgaaatcgttgttcgccatgccaagaactacaccaacgccatgttcaagaa 125828467

                                                                             
Query: 534       caactatccgagcctgaccccacaagcttttgagttcgtgggtgaatttttcaccgatgt 593
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125828466 caactatccgagcctgaccccacaagcttttgagttcgtgggtgaatttttcaccgatgt 125828407

                                                                             
Query: 594       gtctctctacatcctgggttcggacatcaacgtggatgacatggtcaatgaactgtttga 653
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125828406 gtctctctacatcctgggttcggacatcaacgtggatgacatggtcaatgaactgtttga 125828347

                                                                             
Query: 654       cagcctgttcccagtcatctatacccagctgatgaacccaggcctgcccgagtcggcctt 713
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125828346 cagcctgttcccagtcatctatacccagctgatgaacccaggcctgcccgagtcggcctt 125828287

                                                                             
Query: 714       ggacatcaatgagtgcctccgaggggcgaggcgtgacctgaaagtgtttgggaatttccc 773
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125828286 ggacatcaatgagtgcctccgaggggcgaggcgtgacctgaaagtgtttgggaatttccc 125828227

                                                                             
Query: 774       caagcttattatgacccaggtttccaagtcactccaagtcacgagaatcttccttcaggc 833
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125828226 caagcttattatgacccaggtttccaagtcactccaagtcacgagaatcttccttcaggc 125828167

                                                                             
Query: 834       cctgaatctcggaattgaagtgatcaacacaacagatcacctgaagttcagtaaggactg 893
                 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125828166 cctgaatctcggaatcgaagtgatcaacacaacagatcacctgaagttcagtaaggactg 125828107

                                                                             
Query: 894       cggccgaatgcttacccgaatgtggtattgctcgtactgccaggggctgatgatggttaa 953
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125828106 cggccgaatgcttacccgaatgtggtattgctcgtactgccaggggctgatgatggttaa 125828047

                                                                             
Query: 954       gccttgtggtggctactgcaacgtggtcatgcaaggctgtatggcgggcgtggtggagat 1013
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125828046 gccttgtggtggctactgcaacgtggtcatgcaaggctgtatggcgggcgtggtggagat 125827987

                      
Query: 1014      tgaca 1018
                 |||||
Sbjct: 125827986 tgaca 125827982



 Score =  622 bits (314), Expect = e-176
 Identities = 314/314 (100%)
 Strand = Plus / Minus

                                                                             
Query: 1         agctgcgaggaaacttttgcagcggctgggtagcggcaggtctcctgctcctcggggcca 60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126059342 agctgcgaggaaacttttgcagcggctgggtagcggcaggtctcctgctcctcggggcca 126059283

                                                                             
Query: 61        ctgccaggcttgccgagtcctgggacggctctcgcccccgccgctactctcccgcgctct 120
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126059282 ctgccaggcttgccgagtcctgggacggctctcgcccccgccgctactctcccgcgctct 126059223

                                                                             
Query: 121       cctcgctccccgcgaagcaggatggcagggaccgtgcgcaccgcgtgcttggtggtggcg 180
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126059222 cctcgctccccgcgaagcaggatggcagggaccgtgcgcaccgcgtgcttggtggtggcg 126059163

                                                                             
Query: 181       atgctgcttagcttggactgccccggacaggcgcagcccccgccgccgccggacgccacc 240
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126059162 atgctgcttagcttggactgccccggacaggcgcagcccccgccgccgccggacgccacc 126059103

                                                                             
Query: 241       tgtcatcaggtccgctccttcttccagagactgcagcccggactcaagtgggtgccagaa 300
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126059102 tgtcatcaggtccgctccttcttccagagactgcagcccggactcaagtgggtgccagaa 126059043

                               
Query: 301       accccggtgccagg 314
                 ||||||||||||||
Sbjct: 126059042 accccggtgccagg 126059029



 Score =  327 bits (165), Expect = 7e-87
 Identities = 165/165 (100%)
 Strand = Plus / Minus

                                                                             
Query: 311       caggatcagatttacaagtatgtctccccaagggcccgacatgctgctcaagaaagatgg 370
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126027317 caggatcagatttacaagtatgtctccccaagggcccgacatgctgctcaagaaagatgg 126027258

                                                                             
Query: 371       aagaaaaataccaactaacagcgcgattgaacatggaacaactgcttcagtctgcaagta 430
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126027257 aagaaaaataccaactaacagcgcgattgaacatggaacaactgcttcagtctgcaagta 126027198

                                                              
Query: 431       tggagctcaagttcttaattattcagaatgctgcggttttccaag 475
                 |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126027197 tggagctcaagttcttaattattcagaatgctgcggttttccaag 126027153


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,401,300
Number of extensions: 107
Number of successful extensions: 107
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 3
Length of query: 1025
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1004
Effective length of database: 2,808,413,156
Effective search space: 2819646808624
Effective search space used: 2819646808624
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)