Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008560
(1025 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030540.1| glypican-3 [Bos taurus]. 577 e-165
Alignment gi|XP_002707166.1| PREDICTED: glypican 3-like [Bos taurus]. 371 e-103
Alignment gi|NP_001095540.1| glypican-5 [Bos taurus]. 302 4e-82
Alignment gi|NP_001192713.1| glypican-4 [Bos taurus]. 134 1e-31
Alignment gi|XP_002699601.1| PREDICTED: glypican 4 [Bos taurus]. 134 1e-31
Alignment gi|NP_001039701.1| glypican-1 [Bos taurus]. 117 1e-26
Alignment gi|XP_002698257.1| PREDICTED: glypican 2 [Bos taurus]. 97 2e-20
Alignment gi|NP_001180109.1| glypican-2 [Bos taurus]. 94 1e-19
>ref|NP_001030540.1| glypican-3 [Bos taurus].
Length = 580
Score = 577 bits (1488), Expect = e-165
Identities = 285/293 (97%), Positives = 286/293 (97%), Gaps = 1/293 (0%)
Frame = +1
Query: 142 MAGTVRTACLVVAMLLSLDCPGQAQXXXXX-DATCHQVRSFFQRLQPGLKWVPETPVPGS 318
MAGTVRTACLVVAMLLSLDCPGQAQ DATCHQVRSFFQRLQPGLKWVPETPVPGS
Sbjct: 1 MAGTVRTACLVVAMLLSLDCPGQAQPPPPPPDATCHQVRSFFQRLQPGLKWVPETPVPGS 60
Query: 319 DLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVR 498
DLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVR
Sbjct: 61 DLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVR 120
Query: 499 HAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT 678
HAKNYTNAMFKNNYPSLTPQAF+FVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT
Sbjct: 121 HAKNYTNAMFKNNYPSLTPQAFDFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT 180
Query: 679 QLMNPGLPESALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVI 858
QLMNPGLPES LDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVI
Sbjct: 181 QLMNPGLPESTLDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVI 240
Query: 859 NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID 1017
NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID
Sbjct: 241 NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID 293
>ref|XP_002707166.1| PREDICTED: glypican 3-like [Bos taurus].
Length = 478
Score = 371 bits (952), Expect = e-103
Identities = 180/185 (97%), Positives = 181/185 (97%)
Frame = +1
Query: 463 AVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVN 642
A EAFEIVVRHAKNYTNAMFKNNYPSLTPQAF+FVGEFFTDVSLYILGSDINVDDMVN
Sbjct: 7 AFILEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFDFVGEFFTDVSLYILGSDINVDDMVN 66
Query: 643 ELFDSLFPVIYTQLMNPGLPESALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRI 822
ELFDSLFPVIYTQLMNPGLPES LDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRI
Sbjct: 67 ELFDSLFPVIYTQLMNPGLPESTLDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRI 126
Query: 823 FLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAG 1002
FLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAG
Sbjct: 127 FLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAG 186
Query: 1003 VVEID 1017
VVEID
Sbjct: 187 VVEID 191
>ref|NP_001095540.1| glypican-5 [Bos taurus].
Length = 595
Score = 302 bits (773), Expect = 4e-82
Identities = 142/261 (54%), Positives = 193/261 (73%), Gaps = 1/261 (0%)
Frame = +1
Query: 238 TCHQVRSFFQ-RLQPGLKWVPETPVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQL 414
+C +VR FQ RL +K +P++P G DLQVC K P+CC+RKMEE+YQ+ AR +M+Q+
Sbjct: 29 SCEEVRKLFQGRLVGPVKGLPDSPRAGPDLQVCTAKKPSCCTRKMEERYQVVARQDMQQV 88
Query: 415 LQSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDV 594
LQ++S LKFLI +NAA FQE E ++R A+NYT+ +F N Y ++ +A E FTDV
Sbjct: 89 LQTSSSTLKFLISRNAAAFQETLETLIRQAENYTSILFCNTYRNMALEAAASTQELFTDV 148
Query: 595 SLYILGSDINVDDMVNELFDSLFPVIYTQLMNPGLPESALDINECLRGARRDLKVFGNFP 774
LY+ G+D+N ++ VN FDSLFP++Y L+NPG+ +S+L+ +EC+R ARRD+ FGN P
Sbjct: 149 GLYLFGADVNPEEFVNRFFDSLFPLVYNHLINPGVTDSSLEYSECIRTARRDISPFGNIP 208
Query: 775 KLIMTQVSKSLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVK 954
K ++ Q+ +SL +R FLQALNLGIEVINTTDHL FSK+CGR L RM YC +CQGL + K
Sbjct: 209 KRVLGQMGRSLLPSRTFLQALNLGIEVINTTDHLHFSKECGRALLRMQYCPHCQGLALTK 268
Query: 955 PCGGYCNVVMQGCMAGVVEID 1017
PC GYC VM+GC+A V E++
Sbjct: 269 PCMGYCLNVMRGCLAHVAELN 289
>ref|NP_001192713.1| glypican-4 [Bos taurus].
Length = 556
Score = 134 bits (338), Expect = 1e-31
Identities = 74/260 (28%), Positives = 136/260 (52%)
Frame = +1
Query: 238 TCHQVRSFFQRLQPGLKWVPETPVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLL 417
+C +VR + P + G L++CL +G TCCS++MEEKY L ++ + + ++
Sbjct: 29 SCSEVRRLYVSKGFDKNDAPMHEINGDHLKICL-QGYTCCSQEMEEKYSLQSKEDFKSVV 87
Query: 418 QSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVS 597
L+ + F E F+ ++ +A+ N MF Y L Q E + F ++
Sbjct: 88 SEQCNHLQAVFASRYKKFDEFFKELLENAEKSLNDMFVKTYGHLYMQNSELFKDLFEELK 147
Query: 598 LYILGSDINVDDMVNELFDSLFPVIYTQLMNPGLPESALDINECLRGARRDLKVFGNFPK 777
Y + ++N+++M+N+ + L ++ +L+N + + EC+ LK FG+ P+
Sbjct: 148 RYYVAGNVNLEEMLNDFWARLLERMF-RLVNSQYHFTD-EYLECVSKYTEQLKPFGDVPR 205
Query: 778 LIMTQVSKSLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKP 957
+ QV+++ R F Q L + +V++ + + C L +M YCS+CQGL+ VKP
Sbjct: 206 KLKLQVTRAFVAARTFAQGLAVARDVVSKVSVVNPTTQCTHALVKMMYCSHCQGLVTVKP 265
Query: 958 CGGYCNVVMQGCMAGVVEID 1017
C YC+ +M+GC+A ++D
Sbjct: 266 CYNYCSNIMRGCLANQGDLD 285
>ref|XP_002699601.1| PREDICTED: glypican 4 [Bos taurus].
Length = 556
Score = 134 bits (338), Expect = 1e-31
Identities = 74/260 (28%), Positives = 136/260 (52%)
Frame = +1
Query: 238 TCHQVRSFFQRLQPGLKWVPETPVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLL 417
+C +VR + P + G L++CL +G TCCS++MEEKY L ++ + + ++
Sbjct: 29 SCSEVRRLYVSKGFDKNDAPMHEINGDHLKICL-QGYTCCSQEMEEKYSLQSKEDFKSVV 87
Query: 418 QSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVS 597
L+ + F E F+ ++ +A+ N MF Y L Q E + F ++
Sbjct: 88 SEQCNHLQAVFASRYKKFDEFFKELLENAEKSLNDMFVKTYGHLYMQNSELFKDLFEELK 147
Query: 598 LYILGSDINVDDMVNELFDSLFPVIYTQLMNPGLPESALDINECLRGARRDLKVFGNFPK 777
Y + ++N+++M+N+ + L ++ +L+N + + EC+ LK FG+ P+
Sbjct: 148 RYYVAGNVNLEEMLNDFWARLLERMF-RLVNSQYHFTD-EYLECVSKYTEQLKPFGDVPR 205
Query: 778 LIMTQVSKSLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKP 957
+ QV+++ R F Q L + +V++ + + C L +M YCS+CQGL+ VKP
Sbjct: 206 KLKLQVTRAFVAARTFAQGLAVARDVVSKVSVVNPTTQCTHALVKMMYCSHCQGLVTVKP 265
Query: 958 CGGYCNVVMQGCMAGVVEID 1017
C YC+ +M+GC+A ++D
Sbjct: 266 CYNYCSNIMRGCLANQGDLD 285
>ref|NP_001039701.1| glypican-1 [Bos taurus].
Length = 559
Score = 117 bits (294), Expect = 1e-26
Identities = 66/265 (24%), Positives = 131/265 (49%), Gaps = 4/265 (1%)
Frame = +1
Query: 238 TCHQVRSFFQRLQPGLKWVPETPVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLL 417
+C +VR + L VP+ + G L++C P+G TCC+ +MEE +R +E L
Sbjct: 31 SCGEVRQIYGAKGFSLSDVPQAEISGEHLRIC-PQGYTCCTSEMEENLANRSRAELETAL 89
Query: 418 QSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVS 597
+ L+ + F + F+ ++ ++ F + L Q + + + ++
Sbjct: 90 LEGTRALQATLAAQQRGFDDHFQRLLNDSERALQEAFPGAFGELYTQNAKAFRDLYAELR 149
Query: 598 LYILGSDINVDDMVNE----LFDSLFPVIYTQLMNPGLPESALDINECLRGARRDLKVFG 765
LY G+++++ + + E L + LF ++ QL+ LP+ LD CL L+ FG
Sbjct: 150 LYYGGANLHLQETLAEFWARLLERLFRQLHPQLL---LPDDYLD---CLGKQAEPLRPFG 203
Query: 766 NFPKLIMTQVSKSLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLM 945
P+ + + +++ R F+Q L + +V+ + S +C R + ++ YC++C G+
Sbjct: 204 EAPRELRLRATRAFVAARTFVQGLGVAGDVVRKVAKVPLSPECSRAVMKLVYCAHCLGVP 263
Query: 946 MVKPCGGYCNVVMQGCMAGVVEIDS 1020
+PC YC V++GC+A ++D+
Sbjct: 264 GARPCPDYCRNVLKGCLANQADLDA 288
>ref|XP_002698257.1| PREDICTED: glypican 2 [Bos taurus].
Length = 578
Score = 97.1 bits (240), Expect = 2e-20
Identities = 67/282 (23%), Positives = 124/282 (43%), Gaps = 7/282 (2%)
Frame = +1
Query: 172 VVAMLLSLDCPGQAQXXXXX---DATCHQVRSFFQRLQPGLKWVPETPVPGSDLQVCLPK 342
++ +LL L CPG +C + R L +P + G L++C P+
Sbjct: 7 LLLLLLPL-CPGPGPGPGIEAKVTRSCTETRQILGARGYSLSVLPPALISGEHLRIC-PQ 64
Query: 343 GPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNA 522
TCCS ++E++ L++ L + F E F ++ A++ +
Sbjct: 65 EYTCCSSEIEQRLTWETEATFRGLVEENGSFLVHTLAARHRKFDEVFREMLSSAEHSLSM 124
Query: 523 MFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMV----NELFDSLFPVIYTQLMN 690
+F ++ L Q F+ + Y S +DD + +L + +FP+++ Q +
Sbjct: 125 LFHRSFGRLYTQHTPLFSGLFSRLRDYYERSGEGLDDALVDFWAQLLEKMFPLLHPQYIF 184
Query: 691 PGLPESALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVINTTD 870
P+ + A LK FG+ P+ + Q++++L R F+Q L G V++ T
Sbjct: 185 S--PDYLFCLTRLASSADDSLKPFGDSPRRLRLQITRALVAARAFVQGLETGRNVVSETL 242
Query: 871 HLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCM 996
+ S+ C R + R+ C C+G+ + PC G+C V GC+
Sbjct: 243 KMPLSEGCKRAVMRLTGCPLCRGVPSLPPCRGFCLNVAYGCI 284
>ref|NP_001180109.1| glypican-2 [Bos taurus].
Length = 578
Score = 94.4 bits (233), Expect = 1e-19
Identities = 66/282 (23%), Positives = 124/282 (43%), Gaps = 7/282 (2%)
Frame = +1
Query: 172 VVAMLLSLDCPGQAQXXXXX---DATCHQVRSFFQRLQPGLKWVPETPVPGSDLQVCLPK 342
++ +LL L CPG +C + R L +P + G L++C P+
Sbjct: 7 LLLLLLPL-CPGPGPGPGIEAKVTRSCTETRQILGARGYSLSVLPPALISGEHLRIC-PQ 64
Query: 343 GPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNA 522
TCCS ++E++ L++ L + F+ F ++ A++ +
Sbjct: 65 EYTCCSSEIEQRLTWETEATFRGLVEENGSFLVHTLAARHRKFERFFGEMLSSAEHSLSM 124
Query: 523 MFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMV----NELFDSLFPVIYTQLMN 690
+F ++ L Q F+ + Y S +DD + +L + +FP+++ Q +
Sbjct: 125 LFHRSFGRLYTQHTPLFSGLFSRLRDYYERSGEGLDDALVDFWAQLLEKMFPLLHPQYIF 184
Query: 691 PGLPESALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVINTTD 870
P+ + A LK FG+ P+ + Q++++L R F+Q L G V++ T
Sbjct: 185 S--PDYLFCLTRLASSADDSLKPFGDSPRRLRLQITRALVAARAFVQGLETGRNVVSETL 242
Query: 871 HLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCM 996
+ S+ C R + R+ C C+G+ + PC G+C V GC+
Sbjct: 243 KMPLSEGCKRAVMRLTGCPLCRGVPSLPPCRGFCLNVAYGCI 284
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,863,279
Number of extensions: 1008344
Number of successful extensions: 2976
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 2966
Number of HSP's successfully gapped: 8
Length of query: 341
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 238
Effective length of database: 14,273,310
Effective search space: 3397047780
Effective search space used: 3397047780
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008560
(1025 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538178.2| PREDICTED: similar to Glypican-3 precursor (Int... 577 e-165
Alignment gi|XP_542637.2| PREDICTED: similar to Glypican-5 precursor [Can... 305 4e-83
Alignment gi|XP_549265.2| PREDICTED: similar to glypican 4 [Canis familia... 132 5e-31
Alignment gi|XP_534162.2| PREDICTED: similar to glypican 6 precursor [Can... 118 1e-26
Alignment gi|XP_543322.2| PREDICTED: similar to glypican 1 precursor [Can... 113 3e-25
Alignment gi|XP_850687.1| PREDICTED: similar to glypican 2 [Canis familia... 96 4e-20
>ref|XP_538178.2| PREDICTED: similar to Glypican-3 precursor (Intestinal protein OCI-5)
(GTR2-2) (MXR7) [Canis familiaris].
Length = 580
Score = 577 bits (1486), Expect = e-165
Identities = 285/293 (97%), Positives = 287/293 (97%), Gaps = 1/293 (0%)
Frame = +1
Query: 142 MAGTVRTACLVVAMLLSLDCPGQAQXXXXX-DATCHQVRSFFQRLQPGLKWVPETPVPGS 318
MAGTVRTACLVVAMLLSLDCPGQAQ DATCHQVRSFFQRLQPGLKWVPETPVPGS
Sbjct: 1 MAGTVRTACLVVAMLLSLDCPGQAQPPPPPPDATCHQVRSFFQRLQPGLKWVPETPVPGS 60
Query: 319 DLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVR 498
DLQVCLPKGPTCCSRKMEEKYQLTARLN+EQLLQSASMELKFLIIQNAAVFQEAFEIVVR
Sbjct: 61 DLQVCLPKGPTCCSRKMEEKYQLTARLNIEQLLQSASMELKFLIIQNAAVFQEAFEIVVR 120
Query: 499 HAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT 678
HAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT
Sbjct: 121 HAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT 180
Query: 679 QLMNPGLPESALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVI 858
QLMNPGLPESALDINECLRGARRDLKVFG+FPKLIMTQVSKSLQVTRIFLQALNLGIEVI
Sbjct: 181 QLMNPGLPESALDINECLRGARRDLKVFGSFPKLIMTQVSKSLQVTRIFLQALNLGIEVI 240
Query: 859 NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID 1017
NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID
Sbjct: 241 NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID 293
>ref|XP_542637.2| PREDICTED: similar to Glypican-5 precursor [Canis familiaris].
Length = 1141
Score = 305 bits (782), Expect = 4e-83
Identities = 144/261 (55%), Positives = 196/261 (75%), Gaps = 1/261 (0%)
Frame = +1
Query: 238 TCHQVRSFFQ-RLQPGLKWVPETPVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQL 414
+C +VR FQ RL +K +P++P GSDLQVC+ K PTCCSR+MEE+YQ+ AR +M+Q+
Sbjct: 565 SCEEVRKLFQWRLVGAVKGLPDSPRAGSDLQVCVSKKPTCCSRRMEERYQIAARQDMQQV 624
Query: 415 LQSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDV 594
LQ++S LKFLI +NAA FQE E ++R A+NYT+ +F N Y ++ +A V E FTDV
Sbjct: 625 LQTSSSTLKFLISRNAAAFQETLETLIRQAENYTSILFCNTYRNMALEATASVQELFTDV 684
Query: 595 SLYILGSDINVDDMVNELFDSLFPVIYTQLMNPGLPESALDINECLRGARRDLKVFGNFP 774
LY+ G+DIN D+ VN FDSLFP++Y L+NPG+ +S+L+ +EC+R ARRD++ FGN P
Sbjct: 685 GLYLFGADINPDEFVNRFFDSLFPLVYNHLINPGVTDSSLEYSECIRMARRDVRPFGNIP 744
Query: 775 KLIMTQVSKSLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVK 954
K +M Q+ +SL +R FLQALNLGIEVINTTDHL FSK+C + L RM YC +CQGL++ K
Sbjct: 745 KRVMGQMGRSLLPSRTFLQALNLGIEVINTTDHLHFSKECSKALLRMQYCPHCQGLILSK 804
Query: 955 PCGGYCNVVMQGCMAGVVEID 1017
PC GYC V++GC+A E++
Sbjct: 805 PCMGYCLNVVRGCLAHTAELN 825
>ref|XP_549265.2| PREDICTED: similar to glypican 4 [Canis familiaris].
Length = 556
Score = 132 bits (332), Expect = 5e-31
Identities = 73/260 (28%), Positives = 135/260 (51%)
Frame = +1
Query: 238 TCHQVRSFFQRLQPGLKWVPETPVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLL 417
+C +VR + P + G L++C P+G TCCS++MEEKY L ++ + + ++
Sbjct: 29 SCSEVRRLYVSKGFNKNDAPTHEINGDHLKIC-PQGYTCCSQEMEEKYSLQSKDDFKSVV 87
Query: 418 QSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVS 597
L+ + F E F+ ++ +A+ N MF Y L Q E + F ++
Sbjct: 88 SEQCNHLQAIFASRYKKFDEFFKELLENAEKSLNDMFVKTYGRLYMQNSELFKDLFGELK 147
Query: 598 LYILGSDINVDDMVNELFDSLFPVIYTQLMNPGLPESALDINECLRGARRDLKVFGNFPK 777
Y + +N+++M+++ + L ++ +L+N + + EC+ LK FG+ P+
Sbjct: 148 RYYVAGSVNLEEMLSDFWARLLERMF-RLVNSQYHFTD-EYLECVSKYTEQLKPFGDVPR 205
Query: 778 LIMTQVSKSLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKP 957
+ QV+++ R F Q L + +V++ + + C L +M YCS+CQGL+ VKP
Sbjct: 206 KLKLQVTRAFVAARTFAQGLAVARDVVSKVSVVNPTAQCTHALLKMIYCSHCQGLVNVKP 265
Query: 958 CGGYCNVVMQGCMAGVVEID 1017
C YC+ +M+GC+A ++D
Sbjct: 266 CYNYCSNIMRGCLANQGDLD 285
>ref|XP_534162.2| PREDICTED: similar to glypican 6 precursor [Canis familiaris].
Length = 484
Score = 118 bits (295), Expect = 1e-26
Identities = 69/217 (31%), Positives = 114/217 (52%)
Frame = +1
Query: 370 EEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSL 549
+EKY+ ++ L + + FL++ F E F ++ +A+ N MF Y L
Sbjct: 6 KEKYERFVNRLEQKFLSISPIYDCFLVL-----FAEFFRELLENAEKSLNDMFVRTYGML 60
Query: 550 TPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYTQLMNPGLPESALDINEC 729
Q E + FT++ Y G ++N+++M+N+ + L ++ QL+NP S D EC
Sbjct: 61 YMQNSEVFQDLFTELKRYYTGGNVNLEEMLNDFWARLLERMF-QLINPQYHFSE-DYLEC 118
Query: 730 LRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLT 909
+ LK FG+ P+ + QV+++ R F+Q L +G EV N + + C R L
Sbjct: 119 VSKYTDQLKPFGDVPRKLKIQVTRAFIAARTFVQGLTVGREVANRVSKVSPTPGCIRALM 178
Query: 910 RMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEIDS 1020
+M YC YC+GL V+PC YC VM+GC+A ++D+
Sbjct: 179 KMLYCPYCRGLPSVRPCNNYCLNVMKGCLANQADLDT 215
>ref|XP_543322.2| PREDICTED: similar to glypican 1 precursor [Canis familiaris].
Length = 908
Score = 113 bits (282), Expect = 3e-25
Identities = 64/253 (25%), Positives = 127/253 (50%), Gaps = 5/253 (1%)
Frame = +1
Query: 277 PGLKWVPETPVP-GSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLII 453
PG + P+P G L++C P+G TCC+ +MEE +R +E L ++ L+ +
Sbjct: 137 PGRPRSSQQPLPTGEHLRIC-PQGYTCCTSEMEENLANRSRAELETALLDSAHALQATLA 195
Query: 454 QNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDD 633
F + F+ ++ ++ F + L Q + + + ++ LY G++++++D
Sbjct: 196 TQLQSFDDHFQQLLNESERALQDAFPGAFGELYTQGAKAFRDLYAELRLYYRGANLHLED 255
Query: 634 MVNE----LFDSLFPVIYTQLMNPGLPESALDINECLRGARRDLKVFGNFPKLIMTQVSK 801
+ E L + LF ++ QL+ LP+ LD CL L+ FG P+ + + ++
Sbjct: 256 TLAEFWARLLERLFRQLHPQLL---LPDDYLD---CLGKQADALRPFGEAPRELRLRATR 309
Query: 802 SLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVV 981
+ R F+Q L + +V+ + +C R + ++ YC++C G+ +PC YC V
Sbjct: 310 AFVAARAFVQGLGVAGDVVRKVAQVPLGPECSRAVMKLAYCAHCLGVPGARPCPDYCRNV 369
Query: 982 MQGCMAGVVEIDS 1020
++GC+A ++D+
Sbjct: 370 LKGCLANQADLDA 382
>ref|XP_850687.1| PREDICTED: similar to glypican 2 [Canis familiaris].
Length = 607
Score = 96.3 bits (238), Expect = 4e-20
Identities = 67/282 (23%), Positives = 124/282 (43%), Gaps = 7/282 (2%)
Frame = +1
Query: 172 VVAMLLSLDCPGQAQXXXXX---DATCHQVRSFFQRLQPGLKWVPETPVPGSDLQVCLPK 342
++ +LLSL CPG +C + R L +P + G L++C P+
Sbjct: 36 LLLLLLSL-CPGPGPGLGSEAKVTRSCIETRQVLGARGYSLSLLPPALISGEHLRIC-PQ 93
Query: 343 GPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNA 522
TCCS ++E++ L++ L + F E F ++ +++
Sbjct: 94 EYTCCSSEIEQRLTWDTEATFRGLVEENGSFLVHTLASRHRKFDEIFREMLLSSEHSLAL 153
Query: 523 MFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMV----NELFDSLFPVIYTQLMN 690
+F ++ L Q F+ + Y S +DD + +L + LFP+++ Q +
Sbjct: 154 LFHRSFGHLYSQHAPVFSGLFSRLRDYYERSGEGLDDALVDFWAQLLERLFPLLHPQYIF 213
Query: 691 PGLPESALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVINTTD 870
P+ + A LK FG+ P+ + Q++++L R F+Q L G +V++
Sbjct: 214 S--PDYLFCLTRLASSADDSLKPFGDIPRRLYLQITRALVAARAFIQGLETGRDVVSEAL 271
Query: 871 HLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCM 996
+ S+ C R + R+ C C+G+ + PC G+C V GC+
Sbjct: 272 KVPMSEGCKRAVMRLTGCPLCRGVPSLPPCRGFCFNVANGCL 313
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,448,588
Number of extensions: 1032965
Number of successful extensions: 3056
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3052
Number of HSP's successfully gapped: 6
Length of query: 341
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 238
Effective length of database: 15,440,896
Effective search space: 3674933248
Effective search space used: 3674933248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008560
(1025 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003135447.2| PREDICTED: glypican-3-like [Sus scrofa]. 585 e-167
Alignment gi|XP_001925506.3| PREDICTED: glypican-4 [Sus scrofa]. 133 1e-31
Alignment gi|XP_003124388.1| PREDICTED: glypican-2 [Sus scrofa]. 96 2e-20
Alignment gi|XP_003359760.1| PREDICTED: glypican-1-like [Sus scrofa]. 73 3e-13
>ref|XP_003135447.2| PREDICTED: glypican-3-like [Sus scrofa].
Length = 585
Score = 585 bits (1507), Expect = e-167
Identities = 287/292 (98%), Positives = 287/292 (98%)
Frame = +1
Query: 142 MAGTVRTACLVVAMLLSLDCPGQAQXXXXXDATCHQVRSFFQRLQPGLKWVPETPVPGSD 321
MAGTVRTACLVVAMLLSLDCPGQAQ DATCHQVRSFFQRLQPGLKWVPETPVPGSD
Sbjct: 1 MAGTVRTACLVVAMLLSLDCPGQAQPPPPPDATCHQVRSFFQRLQPGLKWVPETPVPGSD 60
Query: 322 LQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVRH 501
LQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVRH
Sbjct: 61 LQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVRH 120
Query: 502 AKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYTQ 681
AKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYTQ
Sbjct: 121 AKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYTQ 180
Query: 682 LMNPGLPESALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVIN 861
LMNPGLPESALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVIN
Sbjct: 181 LMNPGLPESALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVIN 240
Query: 862 TTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID 1017
TTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID
Sbjct: 241 TTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID 292
>ref|XP_001925506.3| PREDICTED: glypican-4 [Sus scrofa].
Length = 514
Score = 133 bits (335), Expect = 1e-31
Identities = 71/241 (29%), Positives = 130/241 (53%)
Frame = +1
Query: 295 PETPVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQ 474
P +PG L++C P+G TCCS++MEEKY L ++ + + ++ L+ + F
Sbjct: 6 PTFSLPGDHLKIC-PQGYTCCSQEMEEKYSLQSKDDFKSVVSEQCNHLQAVFASRYKKFD 64
Query: 475 EAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFD 654
E F+ ++ +A+ N MF Y L Q E + F ++ Y + ++N+++M+ + +
Sbjct: 65 EFFKELLENAEKSLNDMFVKTYGHLYMQNSELFKDLFEELKRYYVAGNVNLEEMLQDFWA 124
Query: 655 SLFPVIYTQLMNPGLPESALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQA 834
L ++ +L+N + + EC+ LK FG+ P+ + QV+++ R F Q
Sbjct: 125 RLLERMF-RLVNSQYHFTD-EYLECVSKYTEQLKPFGDVPRKLKLQVTRAFVAARTFAQG 182
Query: 835 LNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEI 1014
L + +V++ + + C L +M YCS+CQGL+ VKPC YC+ +M+GC+A ++
Sbjct: 183 LAVARDVVSKVSVVNPTAQCTHALLKMIYCSHCQGLVTVKPCYNYCSNIMRGCLANQGDL 242
Query: 1015 D 1017
D
Sbjct: 243 D 243
>ref|XP_003124388.1| PREDICTED: glypican-2 [Sus scrofa].
Length = 577
Score = 96.3 bits (238), Expect = 2e-20
Identities = 66/282 (23%), Positives = 124/282 (43%), Gaps = 7/282 (2%)
Frame = +1
Query: 172 VVAMLLSLDCPGQAQXXXXX---DATCHQVRSFFQRLQPGLKWVPETPVPGSDLQVCLPK 342
++ +LL L CPG +C + R L +P + G L++C P+
Sbjct: 7 LLLLLLPL-CPGPGPGPGIEAKVTRSCIETRQILGARGYSLSLLPPALISGEHLRIC-PQ 64
Query: 343 GPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNA 522
TCCS ++E++ L++ L + F + F ++ A++ +
Sbjct: 65 EYTCCSSEIEQRLTWETETTFRGLVEENGSFLVHTLAARHRKFDDVFREMLSSAEHSLSL 124
Query: 523 MFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMV----NELFDSLFPVIYTQLMN 690
+F ++ L Q F+ + Y S +DD + +L + +FP+++ Q
Sbjct: 125 LFHRSFGRLYAQHTLLFSGLFSRLRDYYERSGAGLDDALVDFWAQLLEKMFPLLHPQYTF 184
Query: 691 PGLPESALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVINTTD 870
P+ + A LK FG+ P+ + Q++++L R F+Q L G +V++ T
Sbjct: 185 S--PDYLFCLTRLASSADDSLKPFGDSPRRLRLQITRALVAARAFVQGLETGRDVVSETL 242
Query: 871 HLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCM 996
+ S+ C R + R+ C C+G+ + PC G+C V GC+
Sbjct: 243 KMPMSEGCRRAVMRLTGCPLCRGVPSLPPCRGFCLNVAHGCI 284
>ref|XP_003359760.1| PREDICTED: glypican-1-like [Sus scrofa].
Length = 329
Score = 72.8 bits (177), Expect = 3e-13
Identities = 48/201 (23%), Positives = 99/201 (49%), Gaps = 5/201 (2%)
Frame = +1
Query: 313 GSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIV 492
G L++C P+G TCC+ +MEE +R +E L +S L+ + F + F+ +
Sbjct: 48 GEHLRIC-PQGYTCCTSEMEENLANRSRAELETALLDSSRALQATLTSQLRGFDDHFQRL 106
Query: 493 VRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNE----LFDSL 660
+ ++ F + L Q+ + + + ++ LY G+++++++ + E L + L
Sbjct: 107 LNDSERTLQEAFPGAFGELYTQSAKAFRDLYAELRLYYRGANLHLEETLAEFWARLLERL 166
Query: 661 FPVIYTQLMNPGLPESALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALN 840
F ++ QL+ LP+ LD CL L+ FG P+ + + +++ R F+Q L
Sbjct: 167 FRQLHPQLL---LPDDYLD---CLGKQAEALRPFGEAPRELRLRATRAFVAARAFVQGLG 220
Query: 841 LGIEVINTTDHLK-FSKDCGR 900
+ +V+ ++ ++ D GR
Sbjct: 221 VAGDVVRKVSQVRPWAPDGGR 241
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,380,216
Number of extensions: 645820
Number of successful extensions: 1761
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1759
Number of HSP's successfully gapped: 4
Length of query: 341
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 241
Effective length of database: 8,854,232
Effective search space: 2133869912
Effective search space used: 2133869912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008560
(1025 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057906.2| glypican-3 precursor [Mus musculus]. 571 e-163
Alignment gi|NP_780709.1| glypican-5 precursor [Mus musculus]. 297 8e-81
Alignment gi|NP_001073313.1| glypican-6 isoform 1 [Mus musculus]. 148 6e-36
Alignment gi|NP_035951.1| glypican-6 isoform 2 [Mus musculus]. 148 6e-36
Alignment gi|NP_032176.2| glypican-4 precursor [Mus musculus]. 130 2e-30
Alignment gi|NP_057905.1| glypican-1 precursor [Mus musculus]. 123 2e-28
Alignment gi|NP_766000.1| glypican-2 precursor [Mus musculus]. 96 5e-20
>ref|NP_057906.2| glypican-3 precursor [Mus musculus].
Length = 579
Score = 571 bits (1472), Expect = e-163
Identities = 280/292 (95%), Positives = 283/292 (96%)
Frame = +1
Query: 142 MAGTVRTACLVVAMLLSLDCPGQAQXXXXXDATCHQVRSFFQRLQPGLKWVPETPVPGSD 321
MAGTVRTACL+VAMLL L C GQAQ DATCHQVRSFFQRLQPGLKWVPETPVPGSD
Sbjct: 1 MAGTVRTACLLVAMLLGLGCLGQAQPPPPPDATCHQVRSFFQRLQPGLKWVPETPVPGSD 60
Query: 322 LQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVRH 501
LQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVRH
Sbjct: 61 LQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVRH 120
Query: 502 AKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYTQ 681
AKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYTQ
Sbjct: 121 AKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYTQ 180
Query: 682 LMNPGLPESALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVIN 861
+MNPGLPES LDINECLRGARRDLKVFG+FPKLIMTQVSKSLQVTRIFLQALNLGIEVIN
Sbjct: 181 MMNPGLPESVLDINECLRGARRDLKVFGSFPKLIMTQVSKSLQVTRIFLQALNLGIEVIN 240
Query: 862 TTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID 1017
TTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID
Sbjct: 241 TTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID 292
>ref|NP_780709.1| glypican-5 precursor [Mus musculus].
Length = 572
Score = 297 bits (761), Expect = 8e-81
Identities = 139/261 (53%), Positives = 191/261 (73%), Gaps = 1/261 (0%)
Frame = +1
Query: 238 TCHQVRSFFQ-RLQPGLKWVPETPVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQL 414
+C +VR FQ RL +K +PE P G DLQVCL K PTCC+RKMEE+YQ+ AR +++Q+
Sbjct: 29 SCEEVRKLFQWRLGGAVKGLPEAPRAGPDLQVCLSKNPTCCTRKMEERYQIAARQDLQQV 88
Query: 415 LQSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDV 594
LQ++S LK LI +NAA FQE E ++R A+NYT+ +F N Y ++ +A + EFFTDV
Sbjct: 89 LQTSSSTLKLLISRNAAAFQETLETLIRQAENYTSILFCNTYRNMALEAAASIQEFFTDV 148
Query: 595 SLYILGSDINVDDMVNELFDSLFPVIYTQLMNPGLPESALDINECLRGARRDLKVFGNFP 774
LY+ G+D+N ++ VN FDSLFP++Y L+NPG+ +S+L +EC+R AR+D+ FGN P
Sbjct: 149 GLYLFGADVNPEEFVNRFFDSLFPLVYNHLINPGVTDSSLQYSECIRMARQDVSPFGNIP 208
Query: 775 KLIMTQVSKSLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVK 954
K +M Q+ +SL R FLQALNLGIEVINTTDH+ FSK+C R L +M YC +CQ LM+ K
Sbjct: 209 KRVMGQMGRSLLPGRTFLQALNLGIEVINTTDHIHFSKECSRALLKMQYCPHCQSLMLSK 268
Query: 955 PCGGYCNVVMQGCMAGVVEID 1017
PC GYC V++GC+A + E++
Sbjct: 269 PCMGYCLNVIRGCLAHMTELN 289
>ref|NP_001073313.1| glypican-6 isoform 1 [Mus musculus].
Length = 565
Score = 148 bits (374), Expect = 6e-36
Identities = 82/261 (31%), Positives = 137/261 (52%)
Frame = +1
Query: 238 TCHQVRSFFQRLQPGLKWVPETPVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLL 417
+C +VR + L +P + G L++C P+ TCC+ +ME+K ++L E L+
Sbjct: 29 SCSEVRQAYGAKGFSLADIPYQEIAGEHLRIC-PQEYTCCTTEMEDKLSQQSKLEFENLV 87
Query: 418 QSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVS 597
+ S ++ + F E F ++ +A+ N MF Y L Q E + FT++
Sbjct: 88 EETSHFVRTTFVSRHKKFDEFFRELLENAEKSLNDMFVRTYGMLYMQNSEVFQDLFTELK 147
Query: 598 LYILGSDINVDDMVNELFDSLFPVIYTQLMNPGLPESALDINECLRGARRDLKVFGNFPK 777
Y G ++N+++M+N+ + L ++ QL+NP S D EC+ LK FG+ P+
Sbjct: 148 RYYTGGNVNLEEMLNDFWARLLERMF-QLINPQYHFSE-DYLECVSKYTDQLKPFGDVPR 205
Query: 778 LIMTQVSKSLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKP 957
+ QV+++ R F+Q L +G EV N + + C R L +M YC YC+GL V+P
Sbjct: 206 KLKIQVTRAFIAARTFVQGLTVGREVANRVSKVSPTPGCIRALMKMLYCPYCRGLPTVRP 265
Query: 958 CGGYCNVVMQGCMAGVVEIDS 1020
C YC VM+GC+A ++D+
Sbjct: 266 CNNYCLNVMKGCLANQADLDT 286
>ref|NP_035951.1| glypican-6 isoform 2 [Mus musculus].
Length = 555
Score = 148 bits (374), Expect = 6e-36
Identities = 82/261 (31%), Positives = 137/261 (52%)
Frame = +1
Query: 238 TCHQVRSFFQRLQPGLKWVPETPVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLL 417
+C +VR + L +P + G L++C P+ TCC+ +ME+K ++L E L+
Sbjct: 29 SCSEVRQAYGAKGFSLADIPYQEIAGEHLRIC-PQEYTCCTTEMEDKLSQQSKLEFENLV 87
Query: 418 QSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVS 597
+ S ++ + F E F ++ +A+ N MF Y L Q E + FT++
Sbjct: 88 EETSHFVRTTFVSRHKKFDEFFRELLENAEKSLNDMFVRTYGMLYMQNSEVFQDLFTELK 147
Query: 598 LYILGSDINVDDMVNELFDSLFPVIYTQLMNPGLPESALDINECLRGARRDLKVFGNFPK 777
Y G ++N+++M+N+ + L ++ QL+NP S D EC+ LK FG+ P+
Sbjct: 148 RYYTGGNVNLEEMLNDFWARLLERMF-QLINPQYHFSE-DYLECVSKYTDQLKPFGDVPR 205
Query: 778 LIMTQVSKSLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKP 957
+ QV+++ R F+Q L +G EV N + + C R L +M YC YC+GL V+P
Sbjct: 206 KLKIQVTRAFIAARTFVQGLTVGREVANRVSKVSPTPGCIRALMKMLYCPYCRGLPTVRP 265
Query: 958 CGGYCNVVMQGCMAGVVEIDS 1020
C YC VM+GC+A ++D+
Sbjct: 266 CNNYCLNVMKGCLANQADLDT 286
>ref|NP_032176.2| glypican-4 precursor [Mus musculus].
Length = 557
Score = 130 bits (327), Expect = 2e-30
Identities = 72/260 (27%), Positives = 135/260 (51%)
Frame = +1
Query: 238 TCHQVRSFFQRLQPGLKWVPETPVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLL 417
+C +VR + P + G L++C P+ TCCS++MEEKY L ++ + + ++
Sbjct: 29 SCSEVRRLYVSKGFNKNDAPLYEINGDHLKIC-PQDYTCCSQEMEEKYSLQSKDDFKTVV 87
Query: 418 QSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVS 597
L+ + F E F+ ++ +A+ N MF Y L Q E + F ++
Sbjct: 88 SEQCNHLQAIFASRYKKFDEFFKELLENAEKSLNDMFVKTYGHLYMQNSELFKDLFVELK 147
Query: 598 LYILGSDINVDDMVNELFDSLFPVIYTQLMNPGLPESALDINECLRGARRDLKVFGNFPK 777
Y + ++N+++M+N+ + L ++ +L+N + + EC+ LK FG+ P+
Sbjct: 148 RYYVAGNVNLEEMLNDFWARLLERMF-RLVNSQYHFTD-EYLECVSKYTEQLKPFGDVPR 205
Query: 778 LIMTQVSKSLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKP 957
+ QV+++ R F Q L + +V++ + + C L +M YCS+C+GL+ VKP
Sbjct: 206 KLKLQVTRAFVAARTFAQGLAVARDVVSKVSVVNPTAQCTHALLKMIYCSHCRGLVTVKP 265
Query: 958 CGGYCNVVMQGCMAGVVEID 1017
C YC+ +M+GC+A ++D
Sbjct: 266 CYNYCSNIMRGCLANQGDLD 285
>ref|NP_057905.1| glypican-1 precursor [Mus musculus].
Length = 557
Score = 123 bits (309), Expect = 2e-28
Identities = 63/261 (24%), Positives = 131/261 (50%)
Frame = +1
Query: 238 TCHQVRSFFQRLQPGLKWVPETPVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLL 417
+C +VR + L VP+ + G L++C P+G TCC+ +MEE +R+ +E L
Sbjct: 31 SCSEVRQIYGAKGFSLSDVPQAEISGEHLRIC-PQGYTCCTSEMEENLANHSRMELESAL 89
Query: 418 QSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVS 597
+S L+ + + F+ ++ ++ F + L Q + + ++
Sbjct: 90 HDSSRALQATLATQLHGIDDHFQRLLNDSERTLQEAFPGAFGDLYTQNTRAFRDLYAELR 149
Query: 598 LYILGSDINVDDMVNELFDSLFPVIYTQLMNPGLPESALDINECLRGARRDLKVFGNFPK 777
LY G+++++++ + E + L ++ QL LP+ LD CL L+ FG+ P+
Sbjct: 150 LYYRGANLHLEETLAEFWARLLERLFKQLHPQLLPDDYLD---CLGKQAEALRPFGDAPR 206
Query: 778 LIMTQVSKSLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKP 957
+ + +++ R F+Q L + +V+ + + +C R + ++ YC++C+G+ +P
Sbjct: 207 ELRLRATRAFVAARSFVQGLGVASDVVRKVAQVPLAPECSRAIMKLVYCAHCRGVPGARP 266
Query: 958 CGGYCNVVMQGCMAGVVEIDS 1020
C YC V++GC+A ++D+
Sbjct: 267 CPDYCRNVLKGCLANQADLDA 287
>ref|NP_766000.1| glypican-2 precursor [Mus musculus].
Length = 579
Score = 95.9 bits (237), Expect = 5e-20
Identities = 64/258 (24%), Positives = 116/258 (44%), Gaps = 4/258 (1%)
Frame = +1
Query: 238 TCHQVRSFFQRLQPGLKWVPETPVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLL 417
+C + R L +P + + G LQVC P+ TCCS + E+K A + L+
Sbjct: 31 SCAETRQVLGARGYSLNLIPPSLISGEHLQVC-PQEYTCCSSETEQKLIRDAEVTFRGLV 89
Query: 418 QSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVS 597
+ + L + F E F ++ +++ +F ++Y L Q F+ +
Sbjct: 90 EDSGSFLIHTLAARHRKFNEFFREMLSISQHSLAQLFSHSYGRLYSQHAVIFNSLFSGLR 149
Query: 598 LYILGSDINVDDMVNE----LFDSLFPVIYTQLMNPGLPESALDINECLRGARRDLKVFG 765
Y S +DD + + L + FP+++ Q P P+ L + A L+ FG
Sbjct: 150 DYYEKSGEGLDDTLADFWAQLLERAFPLLHPQYSFP--PDFLLCLTRLTSTADGSLQPFG 207
Query: 766 NFPKLIMTQVSKSLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLM 945
+ P+ + Q+S++L R +Q L G V++ + + C + L R+ C C+G+
Sbjct: 208 DSPRRLRLQISRALVAARALVQGLETGRNVVSEALKVPVLEGCRQALMRLIGCPLCRGVP 267
Query: 946 MVKPCGGYCNVVMQGCMA 999
+ PC G+C V GC++
Sbjct: 268 SLMPCRGFCLNVAHGCLS 285
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,813,187
Number of extensions: 852743
Number of successful extensions: 2352
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2345
Number of HSP's successfully gapped: 7
Length of query: 341
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 239
Effective length of database: 12,553,887
Effective search space: 3000378993
Effective search space used: 3000378993
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008560
(1025 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001158089.1| glypican-3 isoform 1 precursor [Homo sapiens]. 575 e-164
Alignment gi|NP_004475.1| glypican-3 isoform 2 precursor [Homo sapiens]. 575 e-164
Alignment gi|NP_001158090.1| glypican-3 isoform 3 precursor [Homo sapiens]. 534 e-152
Alignment gi|NP_001158091.1| glypican-3 isoform 4 precursor [Homo sapiens]. 431 e-121
Alignment gi|NP_004457.1| glypican-5 precursor [Homo sapiens]. 298 4e-81
Alignment gi|NP_005699.1| glypican-6 precursor [Homo sapiens]. 148 9e-36
Alignment gi|NP_001439.2| glypican-4 precursor [Homo sapiens]. 132 5e-31
Alignment gi|NP_002072.2| glypican-1 precursor [Homo sapiens]. 122 5e-28
Alignment gi|NP_689955.1| glypican-2 precursor [Homo sapiens]. 95 1e-19
>ref|NP_001158089.1| glypican-3 isoform 1 precursor [Homo sapiens].
Length = 603
Score = 575 bits (1481), Expect = e-164
Identities = 285/293 (97%), Positives = 286/293 (97%), Gaps = 1/293 (0%)
Frame = +1
Query: 142 MAGTVRTACLVVAMLLSLDCPGQAQXXXXX-DATCHQVRSFFQRLQPGLKWVPETPVPGS 318
MAGTVRTACLVVAMLLSLD PGQAQ DATCHQVRSFFQRLQPGLKWVPETPVPGS
Sbjct: 1 MAGTVRTACLVVAMLLSLDFPGQAQPPPPPPDATCHQVRSFFQRLQPGLKWVPETPVPGS 60
Query: 319 DLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVR 498
DLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVR
Sbjct: 61 DLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVR 120
Query: 499 HAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT 678
HAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT
Sbjct: 121 HAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT 180
Query: 679 QLMNPGLPESALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVI 858
QLMNPGLP+SALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVI
Sbjct: 181 QLMNPGLPDSALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVI 240
Query: 859 NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID 1017
NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID
Sbjct: 241 NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID 293
>ref|NP_004475.1| glypican-3 isoform 2 precursor [Homo sapiens].
Length = 580
Score = 575 bits (1481), Expect = e-164
Identities = 285/293 (97%), Positives = 286/293 (97%), Gaps = 1/293 (0%)
Frame = +1
Query: 142 MAGTVRTACLVVAMLLSLDCPGQAQXXXXX-DATCHQVRSFFQRLQPGLKWVPETPVPGS 318
MAGTVRTACLVVAMLLSLD PGQAQ DATCHQVRSFFQRLQPGLKWVPETPVPGS
Sbjct: 1 MAGTVRTACLVVAMLLSLDFPGQAQPPPPPPDATCHQVRSFFQRLQPGLKWVPETPVPGS 60
Query: 319 DLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVR 498
DLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVR
Sbjct: 61 DLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVR 120
Query: 499 HAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT 678
HAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT
Sbjct: 121 HAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT 180
Query: 679 QLMNPGLPESALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVI 858
QLMNPGLP+SALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVI
Sbjct: 181 QLMNPGLPDSALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVI 240
Query: 859 NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID 1017
NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID
Sbjct: 241 NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID 293
>ref|NP_001158090.1| glypican-3 isoform 3 precursor [Homo sapiens].
Length = 564
Score = 534 bits (1375), Expect = e-152
Identities = 268/293 (91%), Positives = 270/293 (92%), Gaps = 1/293 (0%)
Frame = +1
Query: 142 MAGTVRTACLVVAMLLSLDCPGQAQXXXXX-DATCHQVRSFFQRLQPGLKWVPETPVPGS 318
MAGTVRTACLVVAMLLSLD PGQAQ DATCHQVRSFFQRLQPGLKWVPETPVPGS
Sbjct: 1 MAGTVRTACLVVAMLLSLDFPGQAQPPPPPPDATCHQVRSFFQRLQPGLKWVPETPVPGS 60
Query: 319 DLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVR 498
DLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSA +AFEIVVR
Sbjct: 61 DLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSA----------------KAFEIVVR 104
Query: 499 HAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT 678
HAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT
Sbjct: 105 HAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT 164
Query: 679 QLMNPGLPESALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVI 858
QLMNPGLP+SALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVI
Sbjct: 165 QLMNPGLPDSALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVI 224
Query: 859 NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID 1017
NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID
Sbjct: 225 NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID 277
>ref|NP_001158091.1| glypican-3 isoform 4 precursor [Homo sapiens].
Length = 526
Score = 431 bits (1107), Expect = e-121
Identities = 227/293 (77%), Positives = 229/293 (78%), Gaps = 1/293 (0%)
Frame = +1
Query: 142 MAGTVRTACLVVAMLLSLDCPGQAQXXXXX-DATCHQVRSFFQRLQPGLKWVPETPVPGS 318
MAGTVRTACLVVAMLLSLD PGQAQ DATCHQVRSFFQRLQPGLKWV
Sbjct: 1 MAGTVRTACLVVAMLLSLDFPGQAQPPPPPPDATCHQVRSFFQRLQPGLKWV-------- 52
Query: 319 DLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVR 498
P+ P EAFEIVVR
Sbjct: 53 ------PETPV----------------------------------------PEAFEIVVR 66
Query: 499 HAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT 678
HAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT
Sbjct: 67 HAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYT 126
Query: 679 QLMNPGLPESALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVI 858
QLMNPGLP+SALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVI
Sbjct: 127 QLMNPGLPDSALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVI 186
Query: 859 NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID 1017
NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID
Sbjct: 187 NTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEID 239
>ref|NP_004457.1| glypican-5 precursor [Homo sapiens].
Length = 572
Score = 298 bits (764), Expect = 4e-81
Identities = 139/261 (53%), Positives = 194/261 (74%), Gaps = 1/261 (0%)
Frame = +1
Query: 238 TCHQVRSFFQ-RLQPGLKWVPETPVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQL 414
TC +VR FQ RL ++ +P++P G DLQVC+ K PTCC+RKMEE+YQ+ AR +M+Q
Sbjct: 29 TCEEVRKLFQWRLLGAVRGLPDSPRAGPDLQVCISKKPTCCTRKMEERYQIAARQDMQQF 88
Query: 415 LQSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDV 594
LQ++S LKFLI +NAA FQE E +++ A+NYT+ +F + Y ++ +A V EFFTDV
Sbjct: 89 LQTSSSTLKFLISRNAAAFQETLETLIKQAENYTSILFCSTYRNMALEAAASVQEFFTDV 148
Query: 595 SLYILGSDINVDDMVNELFDSLFPVIYTQLMNPGLPESALDINECLRGARRDLKVFGNFP 774
LY+ G+D+N ++ VN FDSLFP++Y L+NPG+ +S+L+ +EC+R ARRD+ FGN P
Sbjct: 149 GLYLFGADVNPEEFVNRFFDSLFPLVYNHLINPGVTDSSLEYSECIRMARRDVSPFGNIP 208
Query: 775 KLIMTQVSKSLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVK 954
+ +M Q+ +SL +R FLQALNLGIEVINTTD+L FSK+C R L +M YC +CQGL + K
Sbjct: 209 QRVMGQMGRSLLPSRTFLQALNLGIEVINTTDYLHFSKECSRALLKMQYCPHCQGLALTK 268
Query: 955 PCGGYCNVVMQGCMAGVVEID 1017
PC GYC VM+GC+A + E++
Sbjct: 269 PCMGYCLNVMRGCLAHMAELN 289
>ref|NP_005699.1| glypican-6 precursor [Homo sapiens].
Length = 555
Score = 148 bits (373), Expect = 9e-36
Identities = 82/261 (31%), Positives = 137/261 (52%)
Frame = +1
Query: 238 TCHQVRSFFQRLQPGLKWVPETPVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLL 417
+C +VR + L +P + G L++C P+ TCC+ +ME+K ++L E L+
Sbjct: 29 SCGEVRQAYGAKGFSLADIPYQEIAGEHLRIC-PQEYTCCTTEMEDKLSQQSKLEFENLV 87
Query: 418 QSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVS 597
+ S ++ + F E F ++ +A+ N MF Y L Q E + FT++
Sbjct: 88 EETSHFVRTTFVSRHKKFDEFFRELLENAEKSLNDMFVRTYGMLYMQNSEVFQDLFTELK 147
Query: 598 LYILGSDINVDDMVNELFDSLFPVIYTQLMNPGLPESALDINECLRGARRDLKVFGNFPK 777
Y G ++N+++M+N+ + L ++ QL+NP S D EC+ LK FG+ P+
Sbjct: 148 RYYTGGNVNLEEMLNDFWARLLERMF-QLINPQYHFSE-DYLECVSKYTDQLKPFGDVPR 205
Query: 778 LIMTQVSKSLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKP 957
+ QV+++ R F+Q L +G EV N + + C R L +M YC YC+GL V+P
Sbjct: 206 KLKIQVTRAFIAARTFVQGLTVGREVANRVSKVSPTPGCIRALMKMLYCPYCRGLPTVRP 265
Query: 958 CGGYCNVVMQGCMAGVVEIDS 1020
C YC VM+GC+A ++D+
Sbjct: 266 CNNYCLNVMKGCLANQADLDT 286
>ref|NP_001439.2| glypican-4 precursor [Homo sapiens].
Length = 556
Score = 132 bits (332), Expect = 5e-31
Identities = 73/260 (28%), Positives = 136/260 (52%)
Frame = +1
Query: 238 TCHQVRSFFQRLQPGLKWVPETPVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLL 417
+C +VR + P + G L++C P+G TCCS++MEEKY L ++ + + ++
Sbjct: 29 SCSEVRRLYVSKGFNKNDAPLHEINGDHLKIC-PQGSTCCSQEMEEKYSLQSKDDFKSVV 87
Query: 418 QSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVS 597
L+ + F E F+ ++ +A+ N MF Y L Q E + F ++
Sbjct: 88 SEQCNHLQAVFASRYKKFDEFFKELLENAEKSLNDMFVKTYGHLYMQNSELFKDLFVELK 147
Query: 598 LYILGSDINVDDMVNELFDSLFPVIYTQLMNPGLPESALDINECLRGARRDLKVFGNFPK 777
Y + ++N+++M+N+ + L ++ +L+N + + EC+ LK FG+ P+
Sbjct: 148 RYYVVGNVNLEEMLNDFWARLLERMF-RLVNSQYHFTD-EYLECVSKYTEQLKPFGDVPR 205
Query: 778 LIMTQVSKSLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKP 957
+ QV+++ R F Q L + +V++ + + C L +M YCS+C+GL+ VKP
Sbjct: 206 KLKLQVTRAFVAARTFAQGLAVAGDVVSKVSVVNPTAQCTHALLKMIYCSHCRGLVTVKP 265
Query: 958 CGGYCNVVMQGCMAGVVEID 1017
C YC+ +M+GC+A ++D
Sbjct: 266 CYNYCSNIMRGCLANQGDLD 285
>ref|NP_002072.2| glypican-1 precursor [Homo sapiens].
Length = 558
Score = 122 bits (306), Expect = 5e-28
Identities = 66/265 (24%), Positives = 134/265 (50%), Gaps = 4/265 (1%)
Frame = +1
Query: 238 TCHQVRSFFQRLQPGLKWVPETPVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLL 417
+C +VR + L VP+ + G L++C P+G TCC+ +MEE + +E L
Sbjct: 31 SCGEVRQIYGAKGFSLSDVPQAEISGEHLRIC-PQGYTCCTSEMEENLANRSHAELETAL 89
Query: 418 QSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVS 597
+ +S L+ ++ F + F+ ++ ++ A F + L Q + ++++
Sbjct: 90 RDSSRVLQAMLATQLRSFDDHFQHLLNDSERTLQATFPGAFGELYTQNARAFRDLYSELR 149
Query: 598 LYILGSDINVDDMVNE----LFDSLFPVIYTQLMNPGLPESALDINECLRGARRDLKVFG 765
LY G+++++++ + E L + LF ++ QL+ LP+ LD CL L+ FG
Sbjct: 150 LYYRGANLHLEETLAEFWARLLERLFKQLHPQLL---LPDDYLD---CLGKQAEALRPFG 203
Query: 766 NFPKLIMTQVSKSLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLM 945
P+ + + +++ R F+Q L + +V+ + +C R + ++ YC++C G+
Sbjct: 204 EAPRELRLRATRAFVAARSFVQGLGVASDVVRKVAQVPLGPECSRAVMKLVYCAHCLGVP 263
Query: 946 MVKPCGGYCNVVMQGCMAGVVEIDS 1020
+PC YC V++GC+A ++D+
Sbjct: 264 GARPCPDYCRNVLKGCLANQADLDA 288
>ref|NP_689955.1| glypican-2 precursor [Homo sapiens].
Length = 579
Score = 94.7 bits (234), Expect = 1e-19
Identities = 71/283 (25%), Positives = 127/283 (44%), Gaps = 7/283 (2%)
Frame = +1
Query: 172 VVAMLLSLDCPGQAQXXXXX---DATCHQVRSFFQRLQPGLKWVPETPVPGSDLQVCLPK 342
++ +LL L CPG +C + R L +P + G L+VC P+
Sbjct: 7 LLLLLLPL-CPGPGPGPGSEAKVTRSCAETRQVLGARGYSLNLIPPALISGEHLRVC-PQ 64
Query: 343 GPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNA 522
TCCS + E++ L++ + L + F E F ++ A++
Sbjct: 65 EYTCCSSETEQRLIRETEATFRGLVEDSGSFLVHTLAARHRKFDEFFLEMLSVAQHSLTQ 124
Query: 523 MFKNNYPSLTPQ-AFEFVGEFFTDVSLYIL---GSDINVDDMVNELFDSLFPVIYTQLMN 690
+F ++Y L Q A F G F Y G D + D +L + +FP+++ Q
Sbjct: 125 LFSHSYGRLYAQHALIFNGLFSRLRDFYGESGEGLDDTLADFWAQLLERVFPLLHPQYSF 184
Query: 691 PGLPESALDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVINTTD 870
P P+ L ++ L+ FG+ P+ + Q++++L R F+Q L G V++
Sbjct: 185 P--PDYLLCLSRLASSTDGSLQPFGDSPRRLRLQITRTLVAARAFVQGLETGRNVVSEAL 242
Query: 871 HLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMA 999
+ S+ C + L R+ C C+G+ + PC G+C V++GC++
Sbjct: 243 KVPVSEGCSQALMRLIGCPLCRGVPSLMPCQGFCLNVVRGCLS 285
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,793,306
Number of extensions: 1018961
Number of successful extensions: 2803
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2788
Number of HSP's successfully gapped: 10
Length of query: 341
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 238
Effective length of database: 14,901,872
Effective search space: 3546645536
Effective search space used: 3546645536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008560
(1025 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 1072 0.0
>Sscrofa_ChrX
|| Length = 144288218
Score = 1072 bits (541), Expect = 0.0
Identities = 544/545 (99%)
Strand = Plus / Minus
Query: 474 agaggcctttgaaatcgttgttcgccatgccaagaactacaccaacgccatgttcaagaa 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125828526 agaggcctttgaaatcgttgttcgccatgccaagaactacaccaacgccatgttcaagaa 125828467
Query: 534 caactatccgagcctgaccccacaagcttttgagttcgtgggtgaatttttcaccgatgt 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125828466 caactatccgagcctgaccccacaagcttttgagttcgtgggtgaatttttcaccgatgt 125828407
Query: 594 gtctctctacatcctgggttcggacatcaacgtggatgacatggtcaatgaactgtttga 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125828406 gtctctctacatcctgggttcggacatcaacgtggatgacatggtcaatgaactgtttga 125828347
Query: 654 cagcctgttcccagtcatctatacccagctgatgaacccaggcctgcccgagtcggcctt 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125828346 cagcctgttcccagtcatctatacccagctgatgaacccaggcctgcccgagtcggcctt 125828287
Query: 714 ggacatcaatgagtgcctccgaggggcgaggcgtgacctgaaagtgtttgggaatttccc 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125828286 ggacatcaatgagtgcctccgaggggcgaggcgtgacctgaaagtgtttgggaatttccc 125828227
Query: 774 caagcttattatgacccaggtttccaagtcactccaagtcacgagaatcttccttcaggc 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125828226 caagcttattatgacccaggtttccaagtcactccaagtcacgagaatcttccttcaggc 125828167
Query: 834 cctgaatctcggaattgaagtgatcaacacaacagatcacctgaagttcagtaaggactg 893
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125828166 cctgaatctcggaatcgaagtgatcaacacaacagatcacctgaagttcagtaaggactg 125828107
Query: 894 cggccgaatgcttacccgaatgtggtattgctcgtactgccaggggctgatgatggttaa 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125828106 cggccgaatgcttacccgaatgtggtattgctcgtactgccaggggctgatgatggttaa 125828047
Query: 954 gccttgtggtggctactgcaacgtggtcatgcaaggctgtatggcgggcgtggtggagat 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125828046 gccttgtggtggctactgcaacgtggtcatgcaaggctgtatggcgggcgtggtggagat 125827987
Query: 1014 tgaca 1018
|||||
Sbjct: 125827986 tgaca 125827982
Score = 622 bits (314), Expect = e-176
Identities = 314/314 (100%)
Strand = Plus / Minus
Query: 1 agctgcgaggaaacttttgcagcggctgggtagcggcaggtctcctgctcctcggggcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126059342 agctgcgaggaaacttttgcagcggctgggtagcggcaggtctcctgctcctcggggcca 126059283
Query: 61 ctgccaggcttgccgagtcctgggacggctctcgcccccgccgctactctcccgcgctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126059282 ctgccaggcttgccgagtcctgggacggctctcgcccccgccgctactctcccgcgctct 126059223
Query: 121 cctcgctccccgcgaagcaggatggcagggaccgtgcgcaccgcgtgcttggtggtggcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126059222 cctcgctccccgcgaagcaggatggcagggaccgtgcgcaccgcgtgcttggtggtggcg 126059163
Query: 181 atgctgcttagcttggactgccccggacaggcgcagcccccgccgccgccggacgccacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126059162 atgctgcttagcttggactgccccggacaggcgcagcccccgccgccgccggacgccacc 126059103
Query: 241 tgtcatcaggtccgctccttcttccagagactgcagcccggactcaagtgggtgccagaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126059102 tgtcatcaggtccgctccttcttccagagactgcagcccggactcaagtgggtgccagaa 126059043
Query: 301 accccggtgccagg 314
||||||||||||||
Sbjct: 126059042 accccggtgccagg 126059029
Score = 327 bits (165), Expect = 7e-87
Identities = 165/165 (100%)
Strand = Plus / Minus
Query: 311 caggatcagatttacaagtatgtctccccaagggcccgacatgctgctcaagaaagatgg 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126027317 caggatcagatttacaagtatgtctccccaagggcccgacatgctgctcaagaaagatgg 126027258
Query: 371 aagaaaaataccaactaacagcgcgattgaacatggaacaactgcttcagtctgcaagta 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126027257 aagaaaaataccaactaacagcgcgattgaacatggaacaactgcttcagtctgcaagta 126027198
Query: 431 tggagctcaagttcttaattattcagaatgctgcggttttccaag 475
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126027197 tggagctcaagttcttaattattcagaatgctgcggttttccaag 126027153
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,401,300
Number of extensions: 107
Number of successful extensions: 107
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 3
Length of query: 1025
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1004
Effective length of database: 2,808,413,156
Effective search space: 2819646808624
Effective search space used: 2819646808624
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)