Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008562
(1085 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069564.2| mitogen-activated protein kinase 8 interacti... 422 e-118
Alignment gi|XP_002697963.1| PREDICTED: mitogen-activated protein kinase ... 422 e-118
Alignment gi|XP_002697962.1| PREDICTED: mitogen-activated protein kinase ... 422 e-118
Alignment gi|XP_001789892.1| PREDICTED: mitogen-activated protein kinase ... 422 e-118
Alignment gi|XP_001789891.1| PREDICTED: mitogen-activated protein kinase ... 422 e-118
>ref|NP_001069564.2| mitogen-activated protein kinase 8 interacting protein 3 [Bos
taurus].
Length = 1328
Score = 422 bits (1086), Expect = e-118
Identities = 216/237 (91%), Positives = 220/237 (92%)
Frame = +3
Query: 180 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 359
VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE
Sbjct: 13 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 72
Query: 360 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEFQ 539
NQEHEVELELLREDNEQLLTQYEREK+LRKQAEEKFIEFEDA HYEFQ
Sbjct: 73 NQEHEVELELLREDNEQLLTQYEREKSLRKQAEEKFIEFEDALEQEKKELQIQVEHYEFQ 132
Query: 540 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNNQ 719
TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGN+Q
Sbjct: 133 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNSQ 192
Query: 720 TEGSLPGRSRKERPTSLNVFPLADGMVRAQTGGKLVPAGDHWHLSDLGQLQLSASYQ 890
TEGSLPGR RKERPTSL+VFPLADG VRAQ GGK VPAGDHWHLSDLGQLQLS+SYQ
Sbjct: 193 TEGSLPGR-RKERPTSLSVFPLADGSVRAQMGGKPVPAGDHWHLSDLGQLQLSSSYQ 248
>ref|XP_002697963.1| PREDICTED: mitogen-activated protein kinase 8 interacting protein 3
isoform 2 [Bos taurus].
Length = 1334
Score = 422 bits (1086), Expect = e-118
Identities = 216/237 (91%), Positives = 220/237 (92%)
Frame = +3
Query: 180 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 359
VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE
Sbjct: 13 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 72
Query: 360 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEFQ 539
NQEHEVELELLREDNEQLLTQYEREK+LRKQAEEKFIEFEDA HYEFQ
Sbjct: 73 NQEHEVELELLREDNEQLLTQYEREKSLRKQAEEKFIEFEDALEQEKKELQIQVEHYEFQ 132
Query: 540 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNNQ 719
TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGN+Q
Sbjct: 133 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNSQ 192
Query: 720 TEGSLPGRSRKERPTSLNVFPLADGMVRAQTGGKLVPAGDHWHLSDLGQLQLSASYQ 890
TEGSLPGR RKERPTSL+VFPLADG VRAQ GGK VPAGDHWHLSDLGQLQLS+SYQ
Sbjct: 193 TEGSLPGR-RKERPTSLSVFPLADGSVRAQMGGKPVPAGDHWHLSDLGQLQLSSSYQ 248
>ref|XP_002697962.1| PREDICTED: mitogen-activated protein kinase 8 interacting protein 3
isoform 1 [Bos taurus].
Length = 1328
Score = 422 bits (1086), Expect = e-118
Identities = 216/237 (91%), Positives = 220/237 (92%)
Frame = +3
Query: 180 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 359
VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE
Sbjct: 13 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 72
Query: 360 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEFQ 539
NQEHEVELELLREDNEQLLTQYEREK+LRKQAEEKFIEFEDA HYEFQ
Sbjct: 73 NQEHEVELELLREDNEQLLTQYEREKSLRKQAEEKFIEFEDALEQEKKELQIQVEHYEFQ 132
Query: 540 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNNQ 719
TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGN+Q
Sbjct: 133 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNSQ 192
Query: 720 TEGSLPGRSRKERPTSLNVFPLADGMVRAQTGGKLVPAGDHWHLSDLGQLQLSASYQ 890
TEGSLPGR RKERPTSL+VFPLADG VRAQ GGK VPAGDHWHLSDLGQLQLS+SYQ
Sbjct: 193 TEGSLPGR-RKERPTSLSVFPLADGSVRAQMGGKPVPAGDHWHLSDLGQLQLSSSYQ 248
>ref|XP_001789892.1| PREDICTED: mitogen-activated protein kinase 8 interacting protein 3
isoform 2 [Bos taurus].
Length = 1334
Score = 422 bits (1086), Expect = e-118
Identities = 216/237 (91%), Positives = 220/237 (92%)
Frame = +3
Query: 180 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 359
VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE
Sbjct: 13 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 72
Query: 360 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEFQ 539
NQEHEVELELLREDNEQLLTQYEREK+LRKQAEEKFIEFEDA HYEFQ
Sbjct: 73 NQEHEVELELLREDNEQLLTQYEREKSLRKQAEEKFIEFEDALEQEKKELQIQVEHYEFQ 132
Query: 540 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNNQ 719
TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGN+Q
Sbjct: 133 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNSQ 192
Query: 720 TEGSLPGRSRKERPTSLNVFPLADGMVRAQTGGKLVPAGDHWHLSDLGQLQLSASYQ 890
TEGSLPGR RKERPTSL+VFPLADG VRAQ GGK VPAGDHWHLSDLGQLQLS+SYQ
Sbjct: 193 TEGSLPGR-RKERPTSLSVFPLADGSVRAQMGGKPVPAGDHWHLSDLGQLQLSSSYQ 248
>ref|XP_001789891.1| PREDICTED: mitogen-activated protein kinase 8 interacting protein 3
isoform 1 [Bos taurus].
Length = 1328
Score = 422 bits (1086), Expect = e-118
Identities = 216/237 (91%), Positives = 220/237 (92%)
Frame = +3
Query: 180 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 359
VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE
Sbjct: 13 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 72
Query: 360 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEFQ 539
NQEHEVELELLREDNEQLLTQYEREK+LRKQAEEKFIEFEDA HYEFQ
Sbjct: 73 NQEHEVELELLREDNEQLLTQYEREKSLRKQAEEKFIEFEDALEQEKKELQIQVEHYEFQ 132
Query: 540 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNNQ 719
TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGN+Q
Sbjct: 133 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNSQ 192
Query: 720 TEGSLPGRSRKERPTSLNVFPLADGMVRAQTGGKLVPAGDHWHLSDLGQLQLSASYQ 890
TEGSLPGR RKERPTSL+VFPLADG VRAQ GGK VPAGDHWHLSDLGQLQLS+SYQ
Sbjct: 193 TEGSLPGR-RKERPTSLSVFPLADGSVRAQMGGKPVPAGDHWHLSDLGQLQLSSSYQ 248
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,541,448
Number of extensions: 1135074
Number of successful extensions: 6519
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6436
Number of HSP's successfully gapped: 5
Length of query: 361
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 258
Effective length of database: 14,273,310
Effective search space: 3682513980
Effective search space used: 3682513980
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008562
(1085 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852670.1| PREDICTED: similar to sperm associated antigen ... 290 1e-78
Alignment gi|XP_865997.1| PREDICTED: similar to sperm associated antigen ... 290 1e-78
Alignment gi|XP_866118.1| PREDICTED: similar to sperm associated antigen ... 288 8e-78
Alignment gi|XP_866099.1| PREDICTED: similar to sperm associated antigen ... 288 8e-78
Alignment gi|XP_537679.2| PREDICTED: similar to sperm associated antigen ... 288 8e-78
Alignment gi|XP_866012.1| PREDICTED: similar to sperm associated antigen ... 288 8e-78
Alignment gi|XP_865969.1| PREDICTED: similar to sperm associated antigen ... 288 8e-78
>ref|XP_852670.1| PREDICTED: similar to sperm associated antigen 9 isoform 1 isoform
2 [Canis familiaris].
Length = 1320
Score = 290 bits (743), Expect = 1e-78
Identities = 157/244 (64%), Positives = 186/244 (76%), Gaps = 5/244 (2%)
Frame = +3
Query: 180 VVYQDDYC-SGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLS 356
VVYQ++ SG+VMSERVSGLAGSIYREFERLI YDEEVVKELMPLVV +LENLDSV +
Sbjct: 7 VVYQEEPGGSGAVMSERVSGLAGSIYREFERLIGRYDEEVVKELMPLVVALLENLDSVFA 66
Query: 357 ENQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEF 536
++QEH+VELELLR+DNEQL+TQYEREKALRK AEEKFIEFED+ E
Sbjct: 67 QDQEHQVELELLRDDNEQLITQYEREKALRKHAEEKFIEFEDSQEQEKKDLQTRVESLES 126
Query: 537 QTRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNN 716
QTRQLELKAKNYADQISRLEERE+E+KKEYNALHQRHTEMI Y+EH+ER+K+ Q+ G++
Sbjct: 127 QTRQLELKAKNYADQISRLEEREAELKKEYNALHQRHTEMIHNYMEHLERTKLHQLSGSD 186
Query: 717 QTEGSLPGRSRKERPTSLNVFPL--ADGMVR--AQTGGKLVPAGDHWHLSDLGQLQLSAS 884
Q E + R RKERP SL +FPL DG++ Q GG+ P + W +L Q + S
Sbjct: 187 QLESTAHSRIRKERPISLGIFPLPAGDGLLTPDTQKGGE-TPGSEQWKFQELSQPRSHTS 245
Query: 885 YQVS 896
+VS
Sbjct: 246 LKVS 249
>ref|XP_865997.1| PREDICTED: similar to sperm associated antigen 9 isoform 1 isoform
5 [Canis familiaris].
Length = 944
Score = 290 bits (743), Expect = 1e-78
Identities = 157/244 (64%), Positives = 186/244 (76%), Gaps = 5/244 (2%)
Frame = +3
Query: 180 VVYQDDYC-SGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLS 356
VVYQ++ SG+VMSERVSGLAGSIYREFERLI YDEEVVKELMPLVV +LENLDSV +
Sbjct: 7 VVYQEEPGGSGAVMSERVSGLAGSIYREFERLIGRYDEEVVKELMPLVVALLENLDSVFA 66
Query: 357 ENQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEF 536
++QEH+VELELLR+DNEQL+TQYEREKALRK AEEKFIEFED+ E
Sbjct: 67 QDQEHQVELELLRDDNEQLITQYEREKALRKHAEEKFIEFEDSQEQEKKDLQTRVESLES 126
Query: 537 QTRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNN 716
QTRQLELKAKNYADQISRLEERE+E+KKEYNALHQRHTEMI Y+EH+ER+K+ Q+ G++
Sbjct: 127 QTRQLELKAKNYADQISRLEEREAELKKEYNALHQRHTEMIHNYMEHLERTKLHQLSGSD 186
Query: 717 QTEGSLPGRSRKERPTSLNVFPL--ADGMVR--AQTGGKLVPAGDHWHLSDLGQLQLSAS 884
Q E + R RKERP SL +FPL DG++ Q GG+ P + W +L Q + S
Sbjct: 187 QLESTAHSRIRKERPISLGIFPLPAGDGLLTPDTQKGGE-TPGSEQWKFQELSQPRSHTS 245
Query: 885 YQVS 896
+VS
Sbjct: 246 LKVS 249
>ref|XP_866118.1| PREDICTED: similar to sperm associated antigen 9 isoform 1 isoform
12 [Canis familiaris].
Length = 1320
Score = 288 bits (736), Expect = 8e-78
Identities = 154/234 (65%), Positives = 181/234 (77%), Gaps = 5/234 (2%)
Frame = +3
Query: 180 VVYQDDYC-SGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLS 356
VVYQ++ SG+VMSERVSGLAGSIYREFERLI YDEEVVKELMPLVV +LENLDSV +
Sbjct: 7 VVYQEEPGGSGAVMSERVSGLAGSIYREFERLIGRYDEEVVKELMPLVVALLENLDSVFA 66
Query: 357 ENQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEF 536
++QEH+VELELLR+DNEQL+TQYEREKALRK AEEKFIEFED+ E
Sbjct: 67 QDQEHQVELELLRDDNEQLITQYEREKALRKHAEEKFIEFEDSQEQEKKDLQTRVESLES 126
Query: 537 QTRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNN 716
QTRQLELKAKNYADQISRLEERE+E+KKEYNALHQRHTEMI Y+EH+ER+K+ Q+ G++
Sbjct: 127 QTRQLELKAKNYADQISRLEEREAELKKEYNALHQRHTEMIHNYMEHLERTKLHQLSGSD 186
Query: 717 QTEGSLPGRSRKERPTSLNVFPL--ADGMVR--AQTGGKLVPAGDHWHLSDLGQ 866
Q E + R RKERP SL +FPL DG++ Q GG+ P + W +L Q
Sbjct: 187 QLESTAHSRIRKERPISLGIFPLPAGDGLLTPDTQKGGE-TPGSEQWKFQELSQ 239
>ref|XP_866099.1| PREDICTED: similar to sperm associated antigen 9 isoform 1 isoform
11 [Canis familiaris].
Length = 1310
Score = 288 bits (736), Expect = 8e-78
Identities = 154/234 (65%), Positives = 181/234 (77%), Gaps = 5/234 (2%)
Frame = +3
Query: 180 VVYQDDYC-SGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLS 356
VVYQ++ SG+VMSERVSGLAGSIYREFERLI YDEEVVKELMPLVV +LENLDSV +
Sbjct: 7 VVYQEEPGGSGAVMSERVSGLAGSIYREFERLIGRYDEEVVKELMPLVVALLENLDSVFA 66
Query: 357 ENQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEF 536
++QEH+VELELLR+DNEQL+TQYEREKALRK AEEKFIEFED+ E
Sbjct: 67 QDQEHQVELELLRDDNEQLITQYEREKALRKHAEEKFIEFEDSQEQEKKDLQTRVESLES 126
Query: 537 QTRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNN 716
QTRQLELKAKNYADQISRLEERE+E+KKEYNALHQRHTEMI Y+EH+ER+K+ Q+ G++
Sbjct: 127 QTRQLELKAKNYADQISRLEEREAELKKEYNALHQRHTEMIHNYMEHLERTKLHQLSGSD 186
Query: 717 QTEGSLPGRSRKERPTSLNVFPL--ADGMVR--AQTGGKLVPAGDHWHLSDLGQ 866
Q E + R RKERP SL +FPL DG++ Q GG+ P + W +L Q
Sbjct: 187 QLESTAHSRIRKERPISLGIFPLPAGDGLLTPDTQKGGE-TPGSEQWKFQELSQ 239
>ref|XP_537679.2| PREDICTED: similar to sperm associated antigen 9 isoform 1 isoform
1 [Canis familiaris].
Length = 1311
Score = 288 bits (736), Expect = 8e-78
Identities = 154/234 (65%), Positives = 181/234 (77%), Gaps = 5/234 (2%)
Frame = +3
Query: 180 VVYQDDYC-SGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLS 356
VVYQ++ SG+VMSERVSGLAGSIYREFERLI YDEEVVKELMPLVV +LENLDSV +
Sbjct: 7 VVYQEEPGGSGAVMSERVSGLAGSIYREFERLIGRYDEEVVKELMPLVVALLENLDSVFA 66
Query: 357 ENQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEF 536
++QEH+VELELLR+DNEQL+TQYEREKALRK AEEKFIEFED+ E
Sbjct: 67 QDQEHQVELELLRDDNEQLITQYEREKALRKHAEEKFIEFEDSQEQEKKDLQTRVESLES 126
Query: 537 QTRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNN 716
QTRQLELKAKNYADQISRLEERE+E+KKEYNALHQRHTEMI Y+EH+ER+K+ Q+ G++
Sbjct: 127 QTRQLELKAKNYADQISRLEEREAELKKEYNALHQRHTEMIHNYMEHLERTKLHQLSGSD 186
Query: 717 QTEGSLPGRSRKERPTSLNVFPL--ADGMVR--AQTGGKLVPAGDHWHLSDLGQ 866
Q E + R RKERP SL +FPL DG++ Q GG+ P + W +L Q
Sbjct: 187 QLESTAHSRIRKERPISLGIFPLPAGDGLLTPDTQKGGE-TPGSEQWKFQELSQ 239
>ref|XP_866012.1| PREDICTED: similar to sperm associated antigen 9 isoform 1 isoform
6 [Canis familiaris].
Length = 930
Score = 288 bits (736), Expect = 8e-78
Identities = 154/234 (65%), Positives = 181/234 (77%), Gaps = 5/234 (2%)
Frame = +3
Query: 180 VVYQDDYC-SGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLS 356
VVYQ++ SG+VMSERVSGLAGSIYREFERLI YDEEVVKELMPLVV +LENLDSV +
Sbjct: 7 VVYQEEPGGSGAVMSERVSGLAGSIYREFERLIGRYDEEVVKELMPLVVALLENLDSVFA 66
Query: 357 ENQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEF 536
++QEH+VELELLR+DNEQL+TQYEREKALRK AEEKFIEFED+ E
Sbjct: 67 QDQEHQVELELLRDDNEQLITQYEREKALRKHAEEKFIEFEDSQEQEKKDLQTRVESLES 126
Query: 537 QTRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNN 716
QTRQLELKAKNYADQISRLEERE+E+KKEYNALHQRHTEMI Y+EH+ER+K+ Q+ G++
Sbjct: 127 QTRQLELKAKNYADQISRLEEREAELKKEYNALHQRHTEMIHNYMEHLERTKLHQLSGSD 186
Query: 717 QTEGSLPGRSRKERPTSLNVFPL--ADGMVR--AQTGGKLVPAGDHWHLSDLGQ 866
Q E + R RKERP SL +FPL DG++ Q GG+ P + W +L Q
Sbjct: 187 QLESTAHSRIRKERPISLGIFPLPAGDGLLTPDTQKGGE-TPGSEQWKFQELSQ 239
>ref|XP_865969.1| PREDICTED: similar to sperm associated antigen 9 isoform 1 isoform
3 [Canis familiaris].
Length = 1306
Score = 288 bits (736), Expect = 8e-78
Identities = 154/234 (65%), Positives = 181/234 (77%), Gaps = 5/234 (2%)
Frame = +3
Query: 180 VVYQDDYC-SGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLS 356
VVYQ++ SG+VMSERVSGLAGSIYREFERLI YDEEVVKELMPLVV +LENLDSV +
Sbjct: 7 VVYQEEPGGSGAVMSERVSGLAGSIYREFERLIGRYDEEVVKELMPLVVALLENLDSVFA 66
Query: 357 ENQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEF 536
++QEH+VELELLR+DNEQL+TQYEREKALRK AEEKFIEFED+ E
Sbjct: 67 QDQEHQVELELLRDDNEQLITQYEREKALRKHAEEKFIEFEDSQEQEKKDLQTRVESLES 126
Query: 537 QTRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNN 716
QTRQLELKAKNYADQISRLEERE+E+KKEYNALHQRHTEMI Y+EH+ER+K+ Q+ G++
Sbjct: 127 QTRQLELKAKNYADQISRLEEREAELKKEYNALHQRHTEMIHNYMEHLERTKLHQLSGSD 186
Query: 717 QTEGSLPGRSRKERPTSLNVFPL--ADGMVR--AQTGGKLVPAGDHWHLSDLGQ 866
Q E + R RKERP SL +FPL DG++ Q GG+ P + W +L Q
Sbjct: 187 QLESTAHSRIRKERPISLGIFPLPAGDGLLTPDTQKGGE-TPGSEQWKFQELSQ 239
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 33,134,845
Number of extensions: 1003961
Number of successful extensions: 7111
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 7006
Number of HSP's successfully gapped: 7
Length of query: 361
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 257
Effective length of database: 15,407,560
Effective search space: 3959742920
Effective search space used: 3959742920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008562
(1085 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003354707.1| PREDICTED: c-Jun-amino-terminal kinase-inter... 436 e-122
Alignment gi|XP_003124802.2| PREDICTED: c-Jun-amino-terminal kinase-inter... 436 e-122
Alignment gi|XP_003131645.2| PREDICTED: c-Jun-amino-terminal kinase-inter... 290 1e-78
>ref|XP_003354707.1| PREDICTED: c-Jun-amino-terminal kinase-interacting protein 3
isoform 2 [Sus scrofa].
Length = 1329
Score = 436 bits (1121), Expect = e-122
Identities = 223/237 (94%), Positives = 223/237 (94%)
Frame = +3
Query: 180 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 359
VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE
Sbjct: 13 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 72
Query: 360 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEFQ 539
NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDA HYEFQ
Sbjct: 73 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDALEQEKKELQVQVEHYEFQ 132
Query: 540 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNNQ 719
TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNNQ
Sbjct: 133 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNNQ 192
Query: 720 TEGSLPGRSRKERPTSLNVFPLADGMVRAQTGGKLVPAGDHWHLSDLGQLQLSASYQ 890
TEGSLPGR RKERPTSLNVFPLADGMVRAQTGGKLVPAGDHWHLSDLGQLQLSASYQ
Sbjct: 193 TEGSLPGR-RKERPTSLNVFPLADGMVRAQTGGKLVPAGDHWHLSDLGQLQLSASYQ 248
>ref|XP_003124802.2| PREDICTED: c-Jun-amino-terminal kinase-interacting protein 3
isoform 1 [Sus scrofa].
Length = 1335
Score = 436 bits (1121), Expect = e-122
Identities = 223/237 (94%), Positives = 223/237 (94%)
Frame = +3
Query: 180 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 359
VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE
Sbjct: 13 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 72
Query: 360 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEFQ 539
NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDA HYEFQ
Sbjct: 73 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDALEQEKKELQVQVEHYEFQ 132
Query: 540 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNNQ 719
TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNNQ
Sbjct: 133 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNNQ 192
Query: 720 TEGSLPGRSRKERPTSLNVFPLADGMVRAQTGGKLVPAGDHWHLSDLGQLQLSASYQ 890
TEGSLPGR RKERPTSLNVFPLADGMVRAQTGGKLVPAGDHWHLSDLGQLQLSASYQ
Sbjct: 193 TEGSLPGR-RKERPTSLNVFPLADGMVRAQTGGKLVPAGDHWHLSDLGQLQLSASYQ 248
>ref|XP_003131645.2| PREDICTED: c-Jun-amino-terminal kinase-interacting protein 4-like
[Sus scrofa].
Length = 252
Score = 290 bits (742), Expect = 1e-78
Identities = 157/244 (64%), Positives = 186/244 (76%), Gaps = 5/244 (2%)
Frame = +3
Query: 180 VVYQDDYC-SGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLS 356
VVYQ++ SG+VMSERVSGLAGSIYREFERLI YDEEVVKELMPLVV VLENLDSV +
Sbjct: 7 VVYQEEPGGSGAVMSERVSGLAGSIYREFERLIGRYDEEVVKELMPLVVAVLENLDSVFA 66
Query: 357 ENQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEF 536
++QEH+VELELLR+DNEQL+TQYEREKALRK AEEKFIEFED+ E
Sbjct: 67 QDQEHQVELELLRDDNEQLITQYEREKALRKHAEEKFIEFEDSQEQEKKDLQTRVESLES 126
Query: 537 QTRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNN 716
QTRQLELKAKNYADQISRLEERE+E+KKEYNALHQRHTEMI Y+EH+ER+K+ Q+ G++
Sbjct: 127 QTRQLELKAKNYADQISRLEEREAELKKEYNALHQRHTEMIHNYMEHLERTKLHQLSGSD 186
Query: 717 QTEGSLPGRSRKERPTSLNVFPL--ADGMVR--AQTGGKLVPAGDHWHLSDLGQLQLSAS 884
Q E + R RKERP SL +FPL +G++ Q GG+ P + W +L Q + S
Sbjct: 187 QLESTAHSRIRKERPISLGIFPLPAGEGLLTPDTQKGGE-TPGSEQWKFQELSQPRSHTS 245
Query: 885 YQVS 896
+VS
Sbjct: 246 LKVS 249
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,596,533
Number of extensions: 992211
Number of successful extensions: 4169
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4119
Number of HSP's successfully gapped: 3
Length of query: 361
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 261
Effective length of database: 8,854,232
Effective search space: 2310954552
Effective search space used: 2310954552
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008562
(1085 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001156920.1| C-Jun-amino-terminal kinase-interacting prot... 430 e-120
Alignment gi|NP_038959.2| C-Jun-amino-terminal kinase-interacting protein... 430 e-120
Alignment gi|NP_001156919.1| C-Jun-amino-terminal kinase-interacting prot... 424 e-119
Alignment gi|NP_001156925.1| C-Jun-amino-terminal kinase-interacting prot... 372 e-103
Alignment gi|NP_001156922.1| C-Jun-amino-terminal kinase-interacting prot... 372 e-103
Alignment gi|NP_001156923.1| C-Jun-amino-terminal kinase-interacting prot... 366 e-101
Alignment gi|NP_001156921.1| C-Jun-amino-terminal kinase-interacting prot... 365 e-101
Alignment gi|NP_001186132.1| C-Jun-amino-terminal kinase-interacting prot... 292 3e-79
Alignment gi|NP_001186133.1| C-Jun-amino-terminal kinase-interacting prot... 289 3e-78
Alignment gi|NP_081845.2| C-Jun-amino-terminal kinase-interacting protein... 289 3e-78
>ref|NP_001156920.1| C-Jun-amino-terminal kinase-interacting protein 3 isoform c [Mus
musculus].
Length = 1322
Score = 430 bits (1105), Expect = e-120
Identities = 218/237 (91%), Positives = 220/237 (92%)
Frame = +3
Query: 180 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 359
VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE
Sbjct: 13 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 72
Query: 360 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEFQ 539
NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDA HYEFQ
Sbjct: 73 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDALEQEKKELQIQVEHYEFQ 132
Query: 540 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNNQ 719
TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGG+ Q
Sbjct: 133 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGSGQ 192
Query: 720 TEGSLPGRSRKERPTSLNVFPLADGMVRAQTGGKLVPAGDHWHLSDLGQLQLSASYQ 890
TE SLPGRSRKERPTSLNVFPLADGMVRAQ GGKLVPAGDHWHLSDLGQLQ S+SYQ
Sbjct: 193 TESSLPGRSRKERPTSLNVFPLADGMVRAQMGGKLVPAGDHWHLSDLGQLQSSSSYQ 249
>ref|NP_038959.2| C-Jun-amino-terminal kinase-interacting protein 3 isoform a [Mus
musculus].
Length = 1337
Score = 430 bits (1105), Expect = e-120
Identities = 218/237 (91%), Positives = 220/237 (92%)
Frame = +3
Query: 180 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 359
VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE
Sbjct: 13 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 72
Query: 360 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEFQ 539
NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDA HYEFQ
Sbjct: 73 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDALEQEKKELQIQVEHYEFQ 132
Query: 540 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNNQ 719
TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGG+ Q
Sbjct: 133 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGSGQ 192
Query: 720 TEGSLPGRSRKERPTSLNVFPLADGMVRAQTGGKLVPAGDHWHLSDLGQLQLSASYQ 890
TE SLPGRSRKERPTSLNVFPLADGMVRAQ GGKLVPAGDHWHLSDLGQLQ S+SYQ
Sbjct: 193 TESSLPGRSRKERPTSLNVFPLADGMVRAQMGGKLVPAGDHWHLSDLGQLQSSSSYQ 249
>ref|NP_001156919.1| C-Jun-amino-terminal kinase-interacting protein 3 isoform b [Mus
musculus].
Length = 1336
Score = 424 bits (1089), Expect = e-119
Identities = 217/237 (91%), Positives = 219/237 (92%)
Frame = +3
Query: 180 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 359
VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE
Sbjct: 13 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 72
Query: 360 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEFQ 539
NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDA HYEFQ
Sbjct: 73 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDALEQEKKELQIQVEHYEFQ 132
Query: 540 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNNQ 719
TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGG+ Q
Sbjct: 133 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGSGQ 192
Query: 720 TEGSLPGRSRKERPTSLNVFPLADGMVRAQTGGKLVPAGDHWHLSDLGQLQLSASYQ 890
TE SLPGR RKERPTSLNVFPLADGMVRAQ GGKLVPAGDHWHLSDLGQLQ S+SYQ
Sbjct: 193 TESSLPGR-RKERPTSLNVFPLADGMVRAQMGGKLVPAGDHWHLSDLGQLQSSSSYQ 248
>ref|NP_001156925.1| C-Jun-amino-terminal kinase-interacting protein 3 isoform g [Mus
musculus].
Length = 1300
Score = 372 bits (956), Expect = e-103
Identities = 190/206 (92%), Positives = 191/206 (92%)
Frame = +3
Query: 180 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 359
VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE
Sbjct: 13 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 72
Query: 360 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEFQ 539
NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDA HYEFQ
Sbjct: 73 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDALEQEKKELQIQVEHYEFQ 132
Query: 540 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNNQ 719
TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGG+ Q
Sbjct: 133 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGSGQ 192
Query: 720 TEGSLPGRSRKERPTSLNVFPLADGM 797
TE SLPGRSRKERPTSLNVFPLADGM
Sbjct: 193 TESSLPGRSRKERPTSLNVFPLADGM 218
>ref|NP_001156922.1| C-Jun-amino-terminal kinase-interacting protein 3 isoform e [Mus
musculus].
Length = 1306
Score = 372 bits (956), Expect = e-103
Identities = 190/206 (92%), Positives = 191/206 (92%)
Frame = +3
Query: 180 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 359
VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE
Sbjct: 13 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 72
Query: 360 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEFQ 539
NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDA HYEFQ
Sbjct: 73 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDALEQEKKELQIQVEHYEFQ 132
Query: 540 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNNQ 719
TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGG+ Q
Sbjct: 133 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGSGQ 192
Query: 720 TEGSLPGRSRKERPTSLNVFPLADGM 797
TE SLPGRSRKERPTSLNVFPLADGM
Sbjct: 193 TESSLPGRSRKERPTSLNVFPLADGM 218
>ref|NP_001156923.1| C-Jun-amino-terminal kinase-interacting protein 3 isoform f [Mus
musculus].
Length = 1305
Score = 366 bits (940), Expect = e-101
Identities = 189/206 (91%), Positives = 190/206 (92%)
Frame = +3
Query: 180 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 359
VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE
Sbjct: 13 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 72
Query: 360 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEFQ 539
NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDA HYEFQ
Sbjct: 73 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDALEQEKKELQIQVEHYEFQ 132
Query: 540 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNNQ 719
TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGG+ Q
Sbjct: 133 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGSGQ 192
Query: 720 TEGSLPGRSRKERPTSLNVFPLADGM 797
TE SLPGR RKERPTSLNVFPLADGM
Sbjct: 193 TESSLPGR-RKERPTSLNVFPLADGM 217
>ref|NP_001156921.1| C-Jun-amino-terminal kinase-interacting protein 3 isoform d [Mus
musculus].
Length = 1314
Score = 365 bits (937), Expect = e-101
Identities = 190/214 (88%), Positives = 191/214 (89%), Gaps = 8/214 (3%)
Frame = +3
Query: 180 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 359
VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE
Sbjct: 13 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 72
Query: 360 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEFQ 539
NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDA HYEFQ
Sbjct: 73 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDALEQEKKELQIQVEHYEFQ 132
Query: 540 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNNQ 719
TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGG+ Q
Sbjct: 133 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGSGQ 192
Query: 720 TEGSLPGR--------SRKERPTSLNVFPLADGM 797
TE SLPGR SRKERPTSLNVFPLADGM
Sbjct: 193 TESSLPGRSPRQSWRKSRKERPTSLNVFPLADGM 226
>ref|NP_001186132.1| C-Jun-amino-terminal kinase-interacting protein 4 isoform 5 [Mus
musculus].
Length = 1321
Score = 292 bits (748), Expect = 3e-79
Identities = 162/258 (62%), Positives = 190/258 (73%), Gaps = 5/258 (1%)
Frame = +3
Query: 180 VVYQDDYC-SGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLS 356
VVYQ++ SG+VMSERVSGLAGSIYREFERLI YDEEVVKELMPLVV VLENLDSV +
Sbjct: 7 VVYQEEPGGSGAVMSERVSGLAGSIYREFERLIGRYDEEVVKELMPLVVAVLENLDSVFA 66
Query: 357 ENQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEF 536
++QEH+VELELLR+DNEQL+TQYEREKALRK AEEKFIEFED+ E
Sbjct: 67 QDQEHQVELELLRDDNEQLITQYEREKALRKHAEEKFIEFEDSQEQEKKDLQTRVESLES 126
Query: 537 QTRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNN 716
QTRQLELKAKNYADQISRLEERE+E+KKEYNALHQRHTEMI Y+EH+ER+K+ Q+ G++
Sbjct: 127 QTRQLELKAKNYADQISRLEEREAELKKEYNALHQRHTEMIHNYMEHLERTKLHQLSGSD 186
Query: 717 QTEGSLPGRSRKERPTSLNVFPL--ADGMVR--AQTGGKLVPAGDHWHLSDLGQLQLSAS 884
Q E + R RKERP SL +FPL DG++ Q GG+ P + W +L Q + S
Sbjct: 187 QLEATAHSRIRKERPISLGIFPLPAGDGLLTPDTQKGGE-TPGSEQWKFQELSQPRSHTS 245
Query: 885 YQVS*PCCGVRAFSPSPL 938
+VS SP PL
Sbjct: 246 LKVS--------HSPEPL 255
>ref|NP_001186133.1| C-Jun-amino-terminal kinase-interacting protein 4 isoform 6 [Mus
musculus].
Length = 1320
Score = 289 bits (739), Expect = 3e-78
Identities = 155/234 (66%), Positives = 181/234 (77%), Gaps = 5/234 (2%)
Frame = +3
Query: 180 VVYQDDYC-SGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLS 356
VVYQ++ SG+VMSERVSGLAGSIYREFERLI YDEEVVKELMPLVV VLENLDSV +
Sbjct: 7 VVYQEEPGGSGAVMSERVSGLAGSIYREFERLIGRYDEEVVKELMPLVVAVLENLDSVFA 66
Query: 357 ENQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEF 536
++QEH+VELELLR+DNEQL+TQYEREKALRK AEEKFIEFED+ E
Sbjct: 67 QDQEHQVELELLRDDNEQLITQYEREKALRKHAEEKFIEFEDSQEQEKKDLQTRVESLES 126
Query: 537 QTRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNN 716
QTRQLELKAKNYADQISRLEERE+E+KKEYNALHQRHTEMI Y+EH+ER+K+ Q+ G++
Sbjct: 127 QTRQLELKAKNYADQISRLEEREAELKKEYNALHQRHTEMIHNYMEHLERTKLHQLSGSD 186
Query: 717 QTEGSLPGRSRKERPTSLNVFPL--ADGMVR--AQTGGKLVPAGDHWHLSDLGQ 866
Q E + R RKERP SL +FPL DG++ Q GG+ P + W +L Q
Sbjct: 187 QLEATAHSRIRKERPISLGIFPLPAGDGLLTPDTQKGGE-TPGSEQWKFQELSQ 239
>ref|NP_081845.2| C-Jun-amino-terminal kinase-interacting protein 4 isoform 1 [Mus
musculus].
Length = 1307
Score = 289 bits (739), Expect = 3e-78
Identities = 155/234 (66%), Positives = 181/234 (77%), Gaps = 5/234 (2%)
Frame = +3
Query: 180 VVYQDDYC-SGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLS 356
VVYQ++ SG+VMSERVSGLAGSIYREFERLI YDEEVVKELMPLVV VLENLDSV +
Sbjct: 7 VVYQEEPGGSGAVMSERVSGLAGSIYREFERLIGRYDEEVVKELMPLVVAVLENLDSVFA 66
Query: 357 ENQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEF 536
++QEH+VELELLR+DNEQL+TQYEREKALRK AEEKFIEFED+ E
Sbjct: 67 QDQEHQVELELLRDDNEQLITQYEREKALRKHAEEKFIEFEDSQEQEKKDLQTRVESLES 126
Query: 537 QTRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNN 716
QTRQLELKAKNYADQISRLEERE+E+KKEYNALHQRHTEMI Y+EH+ER+K+ Q+ G++
Sbjct: 127 QTRQLELKAKNYADQISRLEEREAELKKEYNALHQRHTEMIHNYMEHLERTKLHQLSGSD 186
Query: 717 QTEGSLPGRSRKERPTSLNVFPL--ADGMVR--AQTGGKLVPAGDHWHLSDLGQ 866
Q E + R RKERP SL +FPL DG++ Q GG+ P + W +L Q
Sbjct: 187 QLEATAHSRIRKERPISLGIFPLPAGDGLLTPDTQKGGE-TPGSEQWKFQELSQ 239
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,025,047
Number of extensions: 786141
Number of successful extensions: 5012
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 4873
Number of HSP's successfully gapped: 10
Length of query: 361
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 258
Effective length of database: 12,523,851
Effective search space: 3231153558
Effective search space used: 3231153558
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008562
(1085 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035529.1| C-Jun-amino-terminal kinase-interacting prot... 422 e-118
Alignment gi|NP_055948.2| C-Jun-amino-terminal kinase-interacting protein... 422 e-118
Alignment gi|NP_001124000.1| C-Jun-amino-terminal kinase-interacting prot... 293 2e-79
Alignment gi|NP_003962.3| C-Jun-amino-terminal kinase-interacting protein... 290 1e-78
>ref|NP_001035529.1| C-Jun-amino-terminal kinase-interacting protein 3 isoform 2 [Homo
sapiens].
Length = 1330
Score = 422 bits (1086), Expect = e-118
Identities = 216/237 (91%), Positives = 219/237 (92%)
Frame = +3
Query: 180 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 359
VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE
Sbjct: 13 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 72
Query: 360 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEFQ 539
NQEHEVELELLREDNEQLLTQYEREKALR+QAEEKFIEFEDA HYEFQ
Sbjct: 73 NQEHEVELELLREDNEQLLTQYEREKALRRQAEEKFIEFEDALEQEKKELQIQVEHYEFQ 132
Query: 540 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNNQ 719
TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGN+Q
Sbjct: 133 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNSQ 192
Query: 720 TEGSLPGRSRKERPTSLNVFPLADGMVRAQTGGKLVPAGDHWHLSDLGQLQLSASYQ 890
TE SLPGR RKERPTSLNVFPLADG VRAQ GGKLVPAGDHWHLSDLGQLQ S+SYQ
Sbjct: 193 TESSLPGR-RKERPTSLNVFPLADGTVRAQIGGKLVPAGDHWHLSDLGQLQSSSSYQ 248
>ref|NP_055948.2| C-Jun-amino-terminal kinase-interacting protein 3 isoform 1 [Homo
sapiens].
Length = 1336
Score = 422 bits (1086), Expect = e-118
Identities = 216/237 (91%), Positives = 219/237 (92%)
Frame = +3
Query: 180 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 359
VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE
Sbjct: 13 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 72
Query: 360 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEFQ 539
NQEHEVELELLREDNEQLLTQYEREKALR+QAEEKFIEFEDA HYEFQ
Sbjct: 73 NQEHEVELELLREDNEQLLTQYEREKALRRQAEEKFIEFEDALEQEKKELQIQVEHYEFQ 132
Query: 540 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNNQ 719
TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGN+Q
Sbjct: 133 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNSQ 192
Query: 720 TEGSLPGRSRKERPTSLNVFPLADGMVRAQTGGKLVPAGDHWHLSDLGQLQLSASYQ 890
TE SLPGR RKERPTSLNVFPLADG VRAQ GGKLVPAGDHWHLSDLGQLQ S+SYQ
Sbjct: 193 TESSLPGR-RKERPTSLNVFPLADGTVRAQIGGKLVPAGDHWHLSDLGQLQSSSSYQ 248
>ref|NP_001124000.1| C-Jun-amino-terminal kinase-interacting protein 4 isoform 1 [Homo
sapiens].
Length = 1321
Score = 293 bits (750), Expect = 2e-79
Identities = 159/244 (65%), Positives = 187/244 (76%), Gaps = 5/244 (2%)
Frame = +3
Query: 180 VVYQDDYC-SGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLS 356
VVYQ++ SG+VMSERVSGLAGSIYREFERLI YDEEVVKELMPLVV VLENLDSV +
Sbjct: 7 VVYQEEPGGSGAVMSERVSGLAGSIYREFERLIGRYDEEVVKELMPLVVAVLENLDSVFA 66
Query: 357 ENQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEF 536
++QEH+VELELLR+DNEQL+TQYEREKALRK AEEKFIEFED+ E
Sbjct: 67 QDQEHQVELELLRDDNEQLITQYEREKALRKHAEEKFIEFEDSQEQEKKDLQTRVESLES 126
Query: 537 QTRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNN 716
QTRQLELKAKNYADQISRLEERE+E+KKEYNALHQRHTEMI Y+EH+ER+K+ Q+ G++
Sbjct: 127 QTRQLELKAKNYADQISRLEEREAELKKEYNALHQRHTEMIHNYMEHLERTKLHQLSGSD 186
Query: 717 QTEGSLPGRSRKERPTSLNVFPL--ADGMVR--AQTGGKLVPAGDHWHLSDLGQLQLSAS 884
Q E + R RKERP SL +FPL DG++ AQ GG+ P + W +L Q + S
Sbjct: 187 QLESTAHSRIRKERPISLGIFPLPAGDGLLTPDAQKGGE-TPGSEQWKFQELSQPRSHTS 245
Query: 885 YQVS 896
+VS
Sbjct: 246 LKVS 249
>ref|NP_003962.3| C-Jun-amino-terminal kinase-interacting protein 4 isoform 3 [Homo
sapiens].
Length = 1307
Score = 290 bits (743), Expect = 1e-78
Identities = 156/234 (66%), Positives = 182/234 (77%), Gaps = 5/234 (2%)
Frame = +3
Query: 180 VVYQDDYC-SGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLS 356
VVYQ++ SG+VMSERVSGLAGSIYREFERLI YDEEVVKELMPLVV VLENLDSV +
Sbjct: 7 VVYQEEPGGSGAVMSERVSGLAGSIYREFERLIGRYDEEVVKELMPLVVAVLENLDSVFA 66
Query: 357 ENQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEF 536
++QEH+VELELLR+DNEQL+TQYEREKALRK AEEKFIEFED+ E
Sbjct: 67 QDQEHQVELELLRDDNEQLITQYEREKALRKHAEEKFIEFEDSQEQEKKDLQTRVESLES 126
Query: 537 QTRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNN 716
QTRQLELKAKNYADQISRLEERE+E+KKEYNALHQRHTEMI Y+EH+ER+K+ Q+ G++
Sbjct: 127 QTRQLELKAKNYADQISRLEEREAELKKEYNALHQRHTEMIHNYMEHLERTKLHQLSGSD 186
Query: 717 QTEGSLPGRSRKERPTSLNVFPL--ADGMVR--AQTGGKLVPAGDHWHLSDLGQ 866
Q E + R RKERP SL +FPL DG++ AQ GG+ P + W +L Q
Sbjct: 187 QLESTAHSRIRKERPISLGIFPLPAGDGLLTPDAQKGGE-TPGSEQWKFQELSQ 239
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 32,192,557
Number of extensions: 948174
Number of successful extensions: 6110
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6014
Number of HSP's successfully gapped: 4
Length of query: 361
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 257
Effective length of database: 14,868,908
Effective search space: 3821309356
Effective search space used: 3821309356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008562
(1085 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 565 e-158
Sscrofa_Chr12 190 1e-45
>Sscrofa_Chr03
|| Length = 144787322
Score = 565 bits (285), Expect = e-158
Identities = 326/342 (95%)
Strand = Plus / Minus
Query: 744 agcaggaaggaacggcccacttccctgaatgtcttccccctggcggacggcatggtacgt 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41682448 agcaggaaggaacggcccacttccctgaatgtcttccccctggcggacggcatggtacgt 41682389
Query: 804 gcccagacggggggcaagctcgtgcctgcgggggaccactggcacctgagcgacctcggc 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41682388 gcccagacggggggcaagctcgtgcctgcgggggaccactggcacctgagcgacctcggc 41682329
Query: 864 cagctgcagctcagcgccagctaccaggtttcgtagccgtgctgtggagtgagggccttt 923
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41682328 cagctgcagctcagcgccagctaccaggtttcgtagccgtgctgtggagtgagggccttc 41682269
Query: 924 tccccgtcgcccctcgctcacccggggagcccaggcttagcagcttccccccattagtgg 983
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 41682268 tccccgtcgcccctcgctcacccggggagcccaggcttagcagcttcccccaattagtgg 41682209
Query: 984 acctgtcccgaggtgtgaccgcaatggagacccgggagcaacgcnnnnnnncaaaggcgc 1043
||||||||||||||||||||||| |||||||||||||||| ||| ||| | |||
Sbjct: 41682208 acctgtcccgaggtgtgaccgcagtggagacccgggagcagcgcgggagggcaaggccgc 41682149
Query: 1044 aagccgggtgctgctgctcaggctccattcgtccagcccggc 1085
| || ||||||||||||||||||||||||||||||| |||||
Sbjct: 41682148 aggcggggtgctgctgctcaggctccattcgtccaggccggc 41682107
Score = 563 bits (284), Expect = e-158
Identities = 284/284 (100%)
Strand = Plus / Minus
Query: 178 tggtcgtgtaccaggatgactactgctccggctcggtgatgtcggagcgggtgtcgggcc 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41705412 tggtcgtgtaccaggatgactactgctccggctcggtgatgtcggagcgggtgtcgggcc 41705353
Query: 238 tggcgggctccatctaccgcgagttcgagcgcctcatccactgctatgacgaggaggtgg 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41705352 tggcgggctccatctaccgcgagttcgagcgcctcatccactgctatgacgaggaggtgg 41705293
Query: 298 tcaaagagcttatgccgctcgtggtcaacgtgctcgagaacctggactccgtgctcagcg 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41705292 tcaaagagcttatgccgctcgtggtcaacgtgctcgagaacctggactccgtgctcagcg 41705233
Query: 358 agaaccaggagcacgaggtggagctggagctactgcgcgaggacaacgaacagctgctca 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41705232 agaaccaggagcacgaggtggagctggagctactgcgcgaggacaacgaacagctgctca 41705173
Query: 418 cccagtacgagcgggagaaggctctgcgcaagcaggccgaagag 461
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41705172 cccagtacgagcgggagaaggctctgcgcaagcaggccgaagag 41705129
Score = 244 bits (123), Expect = 8e-62
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 460 agaaattcatcgagttcgaagatgccttggagcaggagaagaaggagctccaagtccagg 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41690637 agaaattcatcgagttcgaagatgccttggagcaggagaagaaggagctccaagtccagg 41690578
Query: 520 tggagcactatgagtttcagacccgccagctggagctgaaggccaaaaactatgcagacc 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41690577 tggagcactatgagtttcagacccgccagctggagctgaaggccaaaaactatgcagacc 41690518
Query: 580 aga 582
|||
Sbjct: 41690517 aga 41690515
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Minus
Query: 652 agatgatccagacctacgtggagcacatcgagaggtccaagatgcagcaggtcgggggca 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41688022 agatgatccagacctacgtggagcacatcgagaggtccaagatgcagcaggtcgggggca 41687963
Query: 712 acaaccagacggagggcagcctgcccgggcggag 745
||||||||||||||||||||||||||||||||||
Sbjct: 41687962 acaaccagacggagggcagcctgcccgggcggag 41687929
Score = 141 bits (71), Expect = 9e-31
Identities = 71/71 (100%)
Strand = Plus / Minus
Query: 583 tttcccggctggaggagcgggagtcggagatgaagaaggagtacaacgccctgcaccagc 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41688172 tttcccggctggaggagcgggagtcggagatgaagaaggagtacaacgccctgcaccagc 41688113
Query: 643 ggcacacggag 653
|||||||||||
Sbjct: 41688112 ggcacacggag 41688102
>Sscrofa_Chr12
|| Length = 63588571
Score = 190 bits (96), Expect = 1e-45
Identities = 206/240 (85%), Gaps = 2/240 (0%)
Strand = Plus / Minus
Query: 213 gtgatgtcggagcgggtgtcgggcctggcgggctccatctaccgcgagttcgagcgcctc 272
|||||||| ||| ||||||| |||||||| |||||||||||||||||||||||| | |||
Sbjct: 27437873 gtgatgtctgagagggtgtccggcctggccggctccatctaccgcgagttcgagaggctc 27437814
Query: 273 atccactgctatgacgaggaggtggtcaaagagcttatgccgctcgtggtcaacgtgctc 332
||| |||| ||||||||||||||||| ||||| ||||| || ||||| ||||||
Sbjct: 27437813 atcgggcgctacgacgaggaggtggtcaaggagctgatgccactggtggtggccgtgctg 27437754
Query: 333 gagaacctggactccgtgctcagcg-agaaccaggagcacgaggtggagctggagctact 391
|||||||||||||| ||| || ||| || | ||||||||| |||||||||||||||| ||
Sbjct: 27437753 gagaacctggactcggtgttc-gcgcaggatcaggagcaccaggtggagctggagctgct 27437695
Query: 392 gcgcgaggacaacgaacagctgctcacccagtacgagcgggagaaggctctgcgcaagca 451
||| || |||||||| ||||| |||||||||||||||| |||||||| |||||||||||
Sbjct: 27437694 gcgggacgacaacgagcagcttatcacccagtacgagcgagagaaggcgctgcgcaagca 27437635
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 18,330,621
Number of extensions: 83
Number of successful extensions: 83
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 7
Length of query: 1085
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1064
Effective length of database: 2,808,413,156
Effective search space: 2988151597984
Effective search space used: 2988151597984
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)