Animal-Genome cDNA 20110601C-008988


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008988
         (992 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001193656.1| similar to serine/threonine kinase [Bos taur...   268   5e-72
Alignment   gi|NP_001070366.1| serine/threonine-protein kinase PAK 1 [Bos t...   179   3e-45
Alignment   gi|XP_002707289.1| PREDICTED: p21-activated kinase 3 [Bos tauru...   176   4e-44
Alignment   gi|XP_001252146.3| PREDICTED: p21-activated kinase 3 isoform 1 ...   166   4e-41
Alignment   gi|XP_002707288.1| PREDICTED: p21-activated kinase 3 [Bos tauru...   163   2e-40
Alignment   gi|NP_001192465.1| serine/threonine-protein kinase PAK 3 [Bos t...   157   1e-38
Alignment   gi|XP_002699988.1| PREDICTED: p21 protein (Cdc42/Rac)-activated...   116   3e-26
Alignment   gi|XP_002699942.1| PREDICTED: p21-activated kinase 3-like [Bos ...    56   6e-08
Alignment   gi|NP_001069652.1| serine/threonine-protein kinase PAK 4 [Bos t...    51   2e-06
Alignment   gi|XP_002706601.1| PREDICTED: p21-activated kinase 4 [Bos tauru...    51   2e-06

>ref|NP_001193656.1| similar to serine/threonine kinase [Bos taurus].
          Length = 524

 Score =  268 bits (685), Expect = 5e-72
 Identities = 133/147 (90%), Positives = 133/147 (90%)
 Frame = +1

Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
           MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIF   
Sbjct: 1   MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFSST 60

Query: 454 XXXXXXXXXXRPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 633
                     RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP
Sbjct: 61  EKGSKKKEKERPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 120

Query: 634 QAVLDVLKFYDSNTVKQKYLSFTPPGK 714
           QAVLDVLKFYDSNTVKQKYLSFTPP K
Sbjct: 121 QAVLDVLKFYDSNTVKQKYLSFTPPEK 147


>ref|NP_001070366.1| serine/threonine-protein kinase PAK 1 [Bos taurus].
          Length = 544

 Score =  179 bits (455), Expect = 3e-45
 Identities = 92/146 (63%), Positives = 106/146 (72%), Gaps = 3/146 (2%)
 Frame = +1

Query: 274 MSDNG-ELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXX 450
           MS+NG +++DKPPAPP+R +ST+   G KD  + NH  KPLP  PEEKK +++       
Sbjct: 1   MSNNGLDIQDKPPAPPMRNTSTMIGAGSKDAGTLNHGSKPLPPNPEEKKKKDRFYRAILP 60

Query: 451 XXXXXXXXXXXRPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKN 630
                      RPEIS PSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITK EQKKN
Sbjct: 61  GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKSEQKKN 120

Query: 631 PQAVLDVLKFYDSNTV--KQKYLSFT 702
           PQAVLDVL+FY+S      QKY+SFT
Sbjct: 121 PQAVLDVLEFYNSKKTSNSQKYMSFT 146


>ref|XP_002707289.1| PREDICTED: p21-activated kinase 3 [Bos taurus].
          Length = 544

 Score =  176 bits (445), Expect = 4e-44
 Identities = 95/152 (62%), Positives = 108/152 (71%), Gaps = 3/152 (1%)
 Frame = +1

Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
           MSD  + E+KPPAPP+RM+S       +D  + NHS KPLP  PEEK  + ++ SIF   
Sbjct: 1   MSDGLDNEEKPPAPPLRMNSN-----NRDSSALNHSSKPLPMAPEEKNKKARLRSIFPGG 55

Query: 454 XXXXXXXXXX-RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKN 630
                      RPEIS PSDFEHTIHVGFDAVTGEFTG+PEQWARLLQTSNITKLEQKKN
Sbjct: 56  GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTGIPEQWARLLQTSNITKLEQKKN 115

Query: 631 PQAVLDVLKFYDSNTV--KQKYLSFTPPGKTS 720
           PQAVLDVLKFYDS      QKY+SFT   K++
Sbjct: 116 PQAVLDVLKFYDSKETVNNQKYMSFTSGDKSA 147


>ref|XP_001252146.3| PREDICTED: p21-activated kinase 3 isoform 1 [Bos taurus].
          Length = 559

 Score =  166 bits (419), Expect = 4e-41
 Identities = 95/167 (56%), Positives = 108/167 (64%), Gaps = 18/167 (10%)
 Frame = +1

Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
           MSD  + E+KPPAPP+RM+S       +D  + NHS KPLP  PEEK  + ++ SIF   
Sbjct: 1   MSDGLDNEEKPPAPPLRMNSN-----NRDSSALNHSSKPLPMAPEEKNKKARLRSIFPGG 55

Query: 454 XXXXXXXXXX-RPEISPPSDFEHTIHVGFDAVTGEFT---------------GMPEQWAR 585
                      RPEIS PSDFEHTIHVGFDAVTGEFT               G+PEQWAR
Sbjct: 56  GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTPDLYGSQMCPGKLPEGIPEQWAR 115

Query: 586 LLQTSNITKLEQKKNPQAVLDVLKFYDSNTV--KQKYLSFTPPGKTS 720
           LLQTSNITKLEQKKNPQAVLDVLKFYDS      QKY+SFT   K++
Sbjct: 116 LLQTSNITKLEQKKNPQAVLDVLKFYDSKETVNNQKYMSFTSGDKSA 162


>ref|XP_002707288.1| PREDICTED: p21-activated kinase 3 [Bos taurus].
          Length = 565

 Score =  163 bits (413), Expect = 2e-40
 Identities = 95/173 (54%), Positives = 108/173 (62%), Gaps = 24/173 (13%)
 Frame = +1

Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
           MSD  + E+KPPAPP+RM+S       +D  + NHS KPLP  PEEK  + ++ SIF   
Sbjct: 1   MSDGLDNEEKPPAPPLRMNSN-----NRDSSALNHSSKPLPMAPEEKNKKARLRSIFPGG 55

Query: 454 XXXXXXXXXX-RPEISPPSDFEHTIHVGFDAVTGEFT---------------------GM 567
                      RPEIS PSDFEHTIHVGFDAVTGEFT                     G+
Sbjct: 56  GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTNSPFQTSRPVTVASSQSEGKMGI 115

Query: 568 PEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSNTV--KQKYLSFTPPGKTS 720
           PEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDS      QKY+SFT   K++
Sbjct: 116 PEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSKETVNNQKYMSFTSGDKSA 168


>ref|NP_001192465.1| serine/threonine-protein kinase PAK 3 [Bos taurus].
          Length = 580

 Score =  157 bits (398), Expect = 1e-38
 Identities = 95/188 (50%), Positives = 108/188 (57%), Gaps = 39/188 (20%)
 Frame = +1

Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
           MSD  + E+KPPAPP+RM+S       +D  + NHS KPLP  PEEK  + ++ SIF   
Sbjct: 1   MSDGLDNEEKPPAPPLRMNSN-----NRDSSALNHSSKPLPMAPEEKNKKARLRSIFPGG 55

Query: 454 XXXXXXXXXX-RPEISPPSDFEHTIHVGFDAVTGEFT----------------------- 561
                      RPEIS PSDFEHTIHVGFDAVTGEFT                       
Sbjct: 56  GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTNSPFQTSRPVTVASSQSEGKMPD 115

Query: 562 -------------GMPEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSNTV--KQKYLS 696
                        G+PEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDS      QKY+S
Sbjct: 116 LYGSQMCPGKLPEGIPEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSKETVNNQKYMS 175

Query: 697 FTPPGKTS 720
           FT   K++
Sbjct: 176 FTSGDKSA 183


>ref|XP_002699988.1| PREDICTED: p21 protein (Cdc42/Rac)-activated kinase 3 [Bos taurus].
          Length = 668

 Score =  116 bits (290), Expect = 3e-26
 Identities = 67/117 (57%), Positives = 71/117 (60%), Gaps = 38/117 (32%)
 Frame = +1

Query: 484 RPEISPPSDFEHTIHVGFDAVTGEFT---------------------------------- 561
           RPEIS PSDFEHTIHVGFDAVTGEFT                                  
Sbjct: 155 RPEISLPSDFEHTIHVGFDAVTGEFTNSPFQTSRPVTVASSQSEGKMPDLYGSQMCPGKL 214

Query: 562 --GMPEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSNTV--KQKYLSFTPPGKTS 720
             G+PEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDS      QKY+SFT   K++
Sbjct: 215 PEGIPEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSKETVNNQKYMSFTSGDKSA 271


>ref|XP_002699942.1| PREDICTED: p21-activated kinase 3-like [Bos taurus].
          Length = 66

 Score = 55.8 bits (133), Expect = 6e-08
 Identities = 28/57 (49%), Positives = 37/57 (64%)
 Frame = +1

Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIF 444
           MSD  + E+KPPAPP+RM+S       +D  + NHS KPLP  PEEK  + ++ SIF
Sbjct: 1   MSDGLDNEEKPPAPPLRMNSN-----NRDSSALNHSSKPLPMAPEEKNKKARLRSIF 52


>ref|NP_001069652.1| serine/threonine-protein kinase PAK 4 [Bos taurus].
          Length = 593

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 23/55 (41%), Positives = 33/55 (60%)
 Frame = +1

Query: 484 RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNPQAVLD 648
           R EIS PS+FEH +H GFD    +FTG+P QW  L++       E  + P+ ++D
Sbjct: 8   RVEISAPSNFEHRVHTGFDQHEQKFTGLPRQWQSLIE-------ESARRPKPLID 55


>ref|XP_002706601.1| PREDICTED: p21-activated kinase 4 [Bos taurus].
          Length = 333

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 23/55 (41%), Positives = 33/55 (60%)
 Frame = +1

Query: 484 RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNPQAVLD 648
           R EIS PS+FEH +H GFD    +FTG+P QW  L++       E  + P+ ++D
Sbjct: 8   RVEISAPSNFEHRVHTGFDQHEQKFTGLPRQWQSLIE-------ESARRPKPLID 55


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,243,479
Number of extensions: 919352
Number of successful extensions: 2960
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 2942
Number of HSP's successfully gapped: 15
Length of query: 330
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,273,310
Effective search space: 3240041370
Effective search space used: 3240041370
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008988
         (992 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_858944.1| PREDICTED: similar to Serine/threonine-protein ...   273   2e-73
Alignment   gi|XP_859057.1| PREDICTED: similar to Serine/threonine-protein ...   271   5e-73
Alignment   gi|XP_859023.1| PREDICTED: similar to Serine/threonine-protein ...   271   5e-73
Alignment   gi|XP_858987.1| PREDICTED: similar to Serine/threonine-protein ...   271   5e-73
Alignment   gi|XP_858831.1| PREDICTED: similar to Serine/threonine-protein ...   271   5e-73
Alignment   gi|XP_858864.1| PREDICTED: similar to Serine/threonine-protein ...   267   1e-71
Alignment   gi|XP_858909.1| PREDICTED: similar to Serine/threonine-protein ...   266   2e-71
Alignment   gi|XP_849432.1| PREDICTED: similar to Serine/threonine-protein ...   265   5e-71
Alignment   gi|XP_858795.1| PREDICTED: similar to Serine/threonine-protein ...   259   2e-69
Alignment   gi|XP_863603.1| PREDICTED: similar to Serine/threonine-protein ...   185   7e-47

>ref|XP_858944.1| PREDICTED: similar to Serine/threonine-protein kinase PAK 2
           (p21-activated kinase 2) (PAK-2) isoform 6 [Canis
           familiaris].
          Length = 542

 Score =  273 bits (697), Expect = 2e-73
 Identities = 139/169 (82%), Positives = 144/169 (85%), Gaps = 4/169 (2%)
 Frame = +1

Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
           MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIF   
Sbjct: 1   MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFSGT 60

Query: 454 XXXXXXXXXXRPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 633
                     RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP
Sbjct: 61  EKGNKKKEKERPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 120

Query: 634 QAVLDVLKFYDSNTVKQKYLSFTPPGKTS----DLVKGWLKWDHRVGEH 768
           QAVLDVLKFYDSNTVKQKYLSFTP GKTS     L++  L++ H+   H
Sbjct: 121 QAVLDVLKFYDSNTVKQKYLSFTPTGKTSYNGKRLIQMGLQYCHKKNWH 169


>ref|XP_859057.1| PREDICTED: similar to Serine/threonine-protein kinase PAK 2
           (p21-activated kinase 2) (PAK-2) isoform 9 [Canis
           familiaris].
          Length = 527

 Score =  271 bits (694), Expect = 5e-73
 Identities = 135/149 (90%), Positives = 135/149 (90%)
 Frame = +1

Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
           MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIF   
Sbjct: 1   MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFSGT 60

Query: 454 XXXXXXXXXXRPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 633
                     RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP
Sbjct: 61  EKGNKKKEKERPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 120

Query: 634 QAVLDVLKFYDSNTVKQKYLSFTPPGKTS 720
           QAVLDVLKFYDSNTVKQKYLSFTP GKTS
Sbjct: 121 QAVLDVLKFYDSNTVKQKYLSFTPTGKTS 149


>ref|XP_859023.1| PREDICTED: similar to Serine/threonine-protein kinase PAK 2
           (p21-activated kinase 2) (PAK-2) isoform 8 [Canis
           familiaris].
          Length = 531

 Score =  271 bits (694), Expect = 5e-73
 Identities = 135/149 (90%), Positives = 135/149 (90%)
 Frame = +1

Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
           MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIF   
Sbjct: 1   MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFSGT 60

Query: 454 XXXXXXXXXXRPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 633
                     RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP
Sbjct: 61  EKGNKKKEKERPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 120

Query: 634 QAVLDVLKFYDSNTVKQKYLSFTPPGKTS 720
           QAVLDVLKFYDSNTVKQKYLSFTP GKTS
Sbjct: 121 QAVLDVLKFYDSNTVKQKYLSFTPTGKTS 149


>ref|XP_858987.1| PREDICTED: similar to Serine/threonine-protein kinase PAK 2
           (p21-activated kinase 2) (PAK-2) isoform 7 [Canis
           familiaris].
          Length = 534

 Score =  271 bits (694), Expect = 5e-73
 Identities = 135/149 (90%), Positives = 135/149 (90%)
 Frame = +1

Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
           MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIF   
Sbjct: 1   MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFSGT 60

Query: 454 XXXXXXXXXXRPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 633
                     RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP
Sbjct: 61  EKGNKKKEKERPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 120

Query: 634 QAVLDVLKFYDSNTVKQKYLSFTPPGKTS 720
           QAVLDVLKFYDSNTVKQKYLSFTP GKTS
Sbjct: 121 QAVLDVLKFYDSNTVKQKYLSFTPTGKTS 149


>ref|XP_858831.1| PREDICTED: similar to Serine/threonine-protein kinase PAK 2
           (p21-activated kinase 2) (PAK-2) isoform 3 [Canis
           familiaris].
          Length = 529

 Score =  271 bits (694), Expect = 5e-73
 Identities = 135/149 (90%), Positives = 135/149 (90%)
 Frame = +1

Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
           MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIF   
Sbjct: 1   MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFSGT 60

Query: 454 XXXXXXXXXXRPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 633
                     RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP
Sbjct: 61  EKGNKKKEKERPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 120

Query: 634 QAVLDVLKFYDSNTVKQKYLSFTPPGKTS 720
           QAVLDVLKFYDSNTVKQKYLSFTP GKTS
Sbjct: 121 QAVLDVLKFYDSNTVKQKYLSFTPTGKTS 149


>ref|XP_858864.1| PREDICTED: similar to Serine/threonine-protein kinase PAK 2
           (p21-activated kinase 2) (PAK-2) isoform 4 [Canis
           familiaris].
          Length = 519

 Score =  267 bits (683), Expect = 1e-71
 Identities = 135/149 (90%), Positives = 135/149 (90%)
 Frame = +1

Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
           MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIF   
Sbjct: 1   MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFSGT 60

Query: 454 XXXXXXXXXXRPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 633
                     RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP
Sbjct: 61  EKEKE-----RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 115

Query: 634 QAVLDVLKFYDSNTVKQKYLSFTPPGKTS 720
           QAVLDVLKFYDSNTVKQKYLSFTP GKTS
Sbjct: 116 QAVLDVLKFYDSNTVKQKYLSFTPTGKTS 144


>ref|XP_858909.1| PREDICTED: similar to Serine/threonine-protein kinase PAK 2
           (p21-activated kinase 2) (PAK-2) isoform 5 [Canis
           familiaris].
          Length = 515

 Score =  266 bits (680), Expect = 2e-71
 Identities = 132/146 (90%), Positives = 132/146 (90%)
 Frame = +1

Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
           MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIF   
Sbjct: 1   MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFSGT 60

Query: 454 XXXXXXXXXXRPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 633
                     RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP
Sbjct: 61  EKGNKKKEKERPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 120

Query: 634 QAVLDVLKFYDSNTVKQKYLSFTPPG 711
           QAVLDVLKFYDSNTVKQKYLSFTP G
Sbjct: 121 QAVLDVLKFYDSNTVKQKYLSFTPTG 146


>ref|XP_849432.1| PREDICTED: similar to Serine/threonine-protein kinase PAK 2
           (p21-activated kinase 2) (PAK-2) (Gamma-PAK) (p62-PAK)
           isoform 1 [Canis familiaris].
          Length = 524

 Score =  265 bits (677), Expect = 5e-71
 Identities = 132/147 (89%), Positives = 132/147 (89%)
 Frame = +1

Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
           MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIF   
Sbjct: 1   MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFSGT 60

Query: 454 XXXXXXXXXXRPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 633
                     RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP
Sbjct: 61  EKGSKKKEKERPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 120

Query: 634 QAVLDVLKFYDSNTVKQKYLSFTPPGK 714
           QAVLDVLKFYDSNTVKQKYLSFTP  K
Sbjct: 121 QAVLDVLKFYDSNTVKQKYLSFTPTEK 147


>ref|XP_858795.1| PREDICTED: similar to Serine/threonine-protein kinase PAK 2
           (p21-activated kinase 2) (PAK-2) isoform 2 [Canis
           familiaris].
          Length = 553

 Score =  259 bits (663), Expect = 2e-69
 Identities = 137/179 (76%), Positives = 137/179 (76%), Gaps = 25/179 (13%)
 Frame = +1

Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
           MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIF   
Sbjct: 1   MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFSGT 60

Query: 454 XXXXXXXXXXRPEISPPSDFEHTIHVGFDAVTGEFT------------------------ 561
                     RPEISPPSDFEHTIHVGFDAVTGEFT                        
Sbjct: 61  EKGNKKKEKERPEISPPSDFEHTIHVGFDAVTGEFTVSLPSWDSFMGCGLLYLCLREMSP 120

Query: 562 -GMPEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSNTVKQKYLSFTPPGKTSDLVKG 735
            GMPEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSNTVKQKYLSFTP GKTS   KG
Sbjct: 121 LGMPEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSNTVKQKYLSFTPTGKTSYNAKG 179


>ref|XP_863603.1| PREDICTED: similar to Serine/threonine-protein kinase PAK 3
           (p21-activated kinase 3) (PAK-3) (Beta-PAK) (p65-PAK)
           isoform 12 [Canis familiaris].
          Length = 533

 Score =  185 bits (469), Expect = 7e-47
 Identities = 97/151 (64%), Positives = 110/151 (72%), Gaps = 2/151 (1%)
 Frame = +1

Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
           MSD+ + E+KPPAPP+RM+S       +D  + NHS KPLP  PEEK  + ++ SIF   
Sbjct: 1   MSDSLDNEEKPPAPPLRMNSN-----NRDSSALNHSSKPLPMAPEEKNKKARLRSIFPGG 55

Query: 454 XXXXXXXXXXRPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 633
                     RPEIS PSDFEHTIHVGFDAVTGEFTG+PEQWARLLQTSNITKLEQKKNP
Sbjct: 56  GDKSKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTGIPEQWARLLQTSNITKLEQKKNP 115

Query: 634 QAVLDVLKFYDSNTV--KQKYLSFTPPGKTS 720
           QAVLDVLKFYDS      QKY+SFT  GKT+
Sbjct: 116 QAVLDVLKFYDSKETVNNQKYMSFTSGGKTA 146


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,392,808
Number of extensions: 882627
Number of successful extensions: 3170
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 3133
Number of HSP's successfully gapped: 37
Length of query: 330
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 227
Effective length of database: 15,440,896
Effective search space: 3505083392
Effective search space used: 3505083392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008988
         (992 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003132660.2| PREDICTED: serine/threonine-protein kinase P...   268   3e-72
Alignment   gi|XP_003129732.2| PREDICTED: serine/threonine-protein kinase P...   179   2e-45
Alignment   gi|XP_003361678.1| PREDICTED: serine/threonine-protein kinase P...   157   7e-39
Alignment   gi|XP_003355938.1| PREDICTED: serine/threonine-protein kinase P...    50   1e-06
Alignment   gi|XP_003355937.1| PREDICTED: serine/threonine-protein kinase P...    50   1e-06
Alignment   gi|XP_003353453.1| PREDICTED: serine/threonine-protein kinase P...    50   1e-06
Alignment   gi|XP_001928687.3| PREDICTED: serine/threonine-protein kinase P...    49   4e-06

>ref|XP_003132660.2| PREDICTED: serine/threonine-protein kinase PAK 2-like [Sus scrofa].
          Length = 580

 Score =  268 bits (685), Expect = 3e-72
 Identities = 133/147 (90%), Positives = 133/147 (90%)
 Frame = +1

Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
           MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIF   
Sbjct: 1   MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFSST 60

Query: 454 XXXXXXXXXXRPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 633
                     RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP
Sbjct: 61  EKGSKKKEKERPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 120

Query: 634 QAVLDVLKFYDSNTVKQKYLSFTPPGK 714
           QAVLDVLKFYDSNTVKQKYLSFTPP K
Sbjct: 121 QAVLDVLKFYDSNTVKQKYLSFTPPEK 147


>ref|XP_003129732.2| PREDICTED: serine/threonine-protein kinase PAK 1-like, partial [Sus
           scrofa].
          Length = 371

 Score =  179 bits (454), Expect = 2e-45
 Identities = 92/146 (63%), Positives = 106/146 (72%), Gaps = 3/146 (2%)
 Frame = +1

Query: 274 MSDNG-ELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXX 450
           MS+NG +++DKPPAPP+R +ST+   G KD  + NH  KPLP  PEEKK +++       
Sbjct: 1   MSNNGLDIQDKPPAPPMRNTSTMIGAGSKDAGTLNHGSKPLPPNPEEKKKKDRFYRSILP 60

Query: 451 XXXXXXXXXXXRPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKN 630
                      RPEIS PSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITK EQKKN
Sbjct: 61  GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKSEQKKN 120

Query: 631 PQAVLDVLKFYDSNTV--KQKYLSFT 702
           PQAVLDVL+FY+S      QKY+SFT
Sbjct: 121 PQAVLDVLEFYNSKKTSNSQKYMSFT 146


>ref|XP_003361678.1| PREDICTED: serine/threonine-protein kinase PAK 3-like, partial [Sus
           scrofa].
          Length = 334

 Score =  157 bits (398), Expect = 7e-39
 Identities = 95/188 (50%), Positives = 108/188 (57%), Gaps = 39/188 (20%)
 Frame = +1

Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
           MSD  + E+KPPAPP+RM+S       +D  + NHS KPLP  PEEK  + ++ SIF   
Sbjct: 1   MSDGLDNEEKPPAPPLRMNSN-----NRDSSALNHSSKPLPMAPEEKNKKARLRSIFPGG 55

Query: 454 XXXXXXXXXX-RPEISPPSDFEHTIHVGFDAVTGEFT----------------------- 561
                      RPEIS PSDFEHTIHVGFDAVTGEFT                       
Sbjct: 56  GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTNSPFQTSRPVTVASSQSEGKMPD 115

Query: 562 -------------GMPEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSNTV--KQKYLS 696
                        G+PEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDS      QKY+S
Sbjct: 116 LYGSQMCPGKLPEGIPEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSKETVNNQKYMS 175

Query: 697 FTPPGKTS 720
           FT   K++
Sbjct: 176 FTSGDKSA 183


>ref|XP_003355938.1| PREDICTED: serine/threonine-protein kinase PAK 4 isoform 2 [Sus
           scrofa].
          Length = 437

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 21/39 (53%), Positives = 27/39 (69%)
 Frame = +1

Query: 484 RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTS 600
           R EIS PS+FEH +H GFD    +FTG+P QW  L++ S
Sbjct: 8   RVEISAPSNFEHRVHTGFDQNEQKFTGLPRQWQSLIEES 46


>ref|XP_003355937.1| PREDICTED: serine/threonine-protein kinase PAK 4 isoform 1 [Sus
           scrofa].
          Length = 591

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 21/39 (53%), Positives = 27/39 (69%)
 Frame = +1

Query: 484 RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTS 600
           R EIS PS+FEH +H GFD    +FTG+P QW  L++ S
Sbjct: 8   RVEISAPSNFEHRVHTGFDQNEQKFTGLPRQWQSLIEES 46


>ref|XP_003353453.1| PREDICTED: serine/threonine-protein kinase PAK 6-like [Sus scrofa].
          Length = 329

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 19/38 (50%), Positives = 25/38 (65%)
 Frame = +1

Query: 484 RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQT 597
           RPEIS P +F+H +H  FD   G+F G+P QW  +L T
Sbjct: 9   RPEISAPQNFQHRVHTSFDPKEGKFVGLPPQWQNILDT 46


>ref|XP_001928687.3| PREDICTED: serine/threonine-protein kinase PAK 7 [Sus scrofa].
          Length = 719

 Score = 48.9 bits (115), Expect = 4e-06
 Identities = 23/42 (54%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
 Frame = +1

Query: 490 EISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLL-QTSNITK 612
           EIS PS+FEH +H GFD    +FTG+P+QW  LL  T+N  K
Sbjct: 10  EISGPSNFEHRVHTGFDPQEQKFTGLPQQWHSLLADTANRPK 51


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,658,755
Number of extensions: 675712
Number of successful extensions: 1898
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1895
Number of HSP's successfully gapped: 8
Length of query: 330
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 231
Effective length of database: 8,879,129
Effective search space: 2051078799
Effective search space used: 2051078799
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008988
         (992 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_796300.1| serine/threonine-protein kinase PAK 2 [Mus musc...   268   5e-72
Alignment   gi|NP_035165.2| serine/threonine-protein kinase PAK 1 [Mus musc...   179   3e-45
Alignment   gi|NP_001181978.1| serine/threonine-protein kinase PAK 3 isofor...   176   3e-44
Alignment   gi|NP_032804.2| serine/threonine-protein kinase PAK 3 isoform D...   176   3e-44
Alignment   gi|NP_001181977.1| serine/threonine-protein kinase PAK 3 isofor...   166   3e-41
Alignment   gi|NP_001181976.1| serine/threonine-protein kinase PAK 3 isofor...   164   1e-40
Alignment   gi|NP_001181975.1| serine/threonine-protein kinase PAK 3 isofor...   158   7e-39
Alignment   gi|NP_081746.1| serine/threonine-protein kinase PAK 4 [Mus musc...    51   2e-06
Alignment   gi|NP_001139326.1| serine/threonine-protein kinase PAK 6 [Mus m...    50   2e-06
Alignment   gi|NP_001028426.2| serine/threonine-protein kinase PAK 6 [Mus m...    50   2e-06

>ref|NP_796300.1| serine/threonine-protein kinase PAK 2 [Mus musculus].
          Length = 524

 Score =  268 bits (685), Expect = 5e-72
 Identities = 133/147 (90%), Positives = 133/147 (90%)
 Frame = +1

Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
           MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIF   
Sbjct: 1   MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFSGT 60

Query: 454 XXXXXXXXXXRPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 633
                     RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP
Sbjct: 61  EKGSKKKEKERPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 120

Query: 634 QAVLDVLKFYDSNTVKQKYLSFTPPGK 714
           QAVLDVLKFYDSNTVKQKYLSFTPP K
Sbjct: 121 QAVLDVLKFYDSNTVKQKYLSFTPPEK 147


>ref|NP_035165.2| serine/threonine-protein kinase PAK 1 [Mus musculus].
          Length = 544

 Score =  179 bits (454), Expect = 3e-45
 Identities = 92/146 (63%), Positives = 106/146 (72%), Gaps = 3/146 (2%)
 Frame = +1

Query: 274 MSDNG-ELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXX 450
           MS+NG +++DKPPAPP+R +ST+   G KD  + NH  KPLP  PEEKK +++       
Sbjct: 1   MSNNGVDIQDKPPAPPMRNTSTMIGAGSKDTGTLNHGSKPLPPNPEEKKKKDRFYRSILP 60

Query: 451 XXXXXXXXXXXRPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKN 630
                      RPEIS PSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITK EQKKN
Sbjct: 61  GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKSEQKKN 120

Query: 631 PQAVLDVLKFYDSNTV--KQKYLSFT 702
           PQAVLDVL+FY+S      QKY+SFT
Sbjct: 121 PQAVLDVLEFYNSKKTSNSQKYMSFT 146


>ref|NP_001181978.1| serine/threonine-protein kinase PAK 3 isoform D [Mus musculus].
          Length = 544

 Score =  176 bits (446), Expect = 3e-44
 Identities = 95/152 (62%), Positives = 109/152 (71%), Gaps = 3/152 (1%)
 Frame = +1

Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
           MSD+ + E+KPPAPP+RM+S       +D  + NHS KPLP  PEEK  + ++ SIF   
Sbjct: 1   MSDSLDNEEKPPAPPLRMNSN-----NRDSSALNHSSKPLPMAPEEKNKKARLRSIFPGG 55

Query: 454 XXXXXXXXXX-RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKN 630
                      RPEIS PSDFEHTIHVGFDAVTGEFTG+PEQWARLLQTSNITKLEQKKN
Sbjct: 56  GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTGIPEQWARLLQTSNITKLEQKKN 115

Query: 631 PQAVLDVLKFYDSNTV--KQKYLSFTPPGKTS 720
           PQAVLDVLKFYDS      QKY+SFT   K++
Sbjct: 116 PQAVLDVLKFYDSKETVNNQKYMSFTSGDKSA 147


>ref|NP_032804.2| serine/threonine-protein kinase PAK 3 isoform D [Mus musculus].
          Length = 544

 Score =  176 bits (446), Expect = 3e-44
 Identities = 95/152 (62%), Positives = 109/152 (71%), Gaps = 3/152 (1%)
 Frame = +1

Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
           MSD+ + E+KPPAPP+RM+S       +D  + NHS KPLP  PEEK  + ++ SIF   
Sbjct: 1   MSDSLDNEEKPPAPPLRMNSN-----NRDSSALNHSSKPLPMAPEEKNKKARLRSIFPGG 55

Query: 454 XXXXXXXXXX-RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKN 630
                      RPEIS PSDFEHTIHVGFDAVTGEFTG+PEQWARLLQTSNITKLEQKKN
Sbjct: 56  GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTGIPEQWARLLQTSNITKLEQKKN 115

Query: 631 PQAVLDVLKFYDSNTV--KQKYLSFTPPGKTS 720
           PQAVLDVLKFYDS      QKY+SFT   K++
Sbjct: 116 PQAVLDVLKFYDSKETVNNQKYMSFTSGDKSA 147


>ref|NP_001181977.1| serine/threonine-protein kinase PAK 3 isoform C [Mus musculus].
          Length = 559

 Score =  166 bits (420), Expect = 3e-41
 Identities = 95/167 (56%), Positives = 109/167 (65%), Gaps = 18/167 (10%)
 Frame = +1

Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
           MSD+ + E+KPPAPP+RM+S       +D  + NHS KPLP  PEEK  + ++ SIF   
Sbjct: 1   MSDSLDNEEKPPAPPLRMNSN-----NRDSSALNHSSKPLPMAPEEKNKKARLRSIFPGG 55

Query: 454 XXXXXXXXXX-RPEISPPSDFEHTIHVGFDAVTGEFT---------------GMPEQWAR 585
                      RPEIS PSDFEHTIHVGFDAVTGEFT               G+PEQWAR
Sbjct: 56  GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTPDLYGSQMCPGKLPEGIPEQWAR 115

Query: 586 LLQTSNITKLEQKKNPQAVLDVLKFYDSNTV--KQKYLSFTPPGKTS 720
           LLQTSNITKLEQKKNPQAVLDVLKFYDS      QKY+SFT   K++
Sbjct: 116 LLQTSNITKLEQKKNPQAVLDVLKFYDSKETVNNQKYMSFTSGDKSA 162


>ref|NP_001181976.1| serine/threonine-protein kinase PAK 3 isoform B [Mus musculus].
          Length = 565

 Score =  164 bits (414), Expect = 1e-40
 Identities = 95/173 (54%), Positives = 109/173 (63%), Gaps = 24/173 (13%)
 Frame = +1

Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
           MSD+ + E+KPPAPP+RM+S       +D  + NHS KPLP  PEEK  + ++ SIF   
Sbjct: 1   MSDSLDNEEKPPAPPLRMNSN-----NRDSSALNHSSKPLPMAPEEKNKKARLRSIFPGG 55

Query: 454 XXXXXXXXXX-RPEISPPSDFEHTIHVGFDAVTGEFT---------------------GM 567
                      RPEIS PSDFEHTIHVGFDAVTGEFT                     G+
Sbjct: 56  GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTNSPFQTSRPVTVASSQSEGKMGI 115

Query: 568 PEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSNTV--KQKYLSFTPPGKTS 720
           PEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDS      QKY+SFT   K++
Sbjct: 116 PEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSKETVNNQKYMSFTSGDKSA 168


>ref|NP_001181975.1| serine/threonine-protein kinase PAK 3 isoform A [Mus musculus].
          Length = 580

 Score =  158 bits (399), Expect = 7e-39
 Identities = 95/188 (50%), Positives = 109/188 (57%), Gaps = 39/188 (20%)
 Frame = +1

Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
           MSD+ + E+KPPAPP+RM+S       +D  + NHS KPLP  PEEK  + ++ SIF   
Sbjct: 1   MSDSLDNEEKPPAPPLRMNSN-----NRDSSALNHSSKPLPMAPEEKNKKARLRSIFPGG 55

Query: 454 XXXXXXXXXX-RPEISPPSDFEHTIHVGFDAVTGEFT----------------------- 561
                      RPEIS PSDFEHTIHVGFDAVTGEFT                       
Sbjct: 56  GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTNSPFQTSRPVTVASSQSEGKMPD 115

Query: 562 -------------GMPEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSNTV--KQKYLS 696
                        G+PEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDS      QKY+S
Sbjct: 116 LYGSQMCPGKLPEGIPEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSKETVNNQKYMS 175

Query: 697 FTPPGKTS 720
           FT   K++
Sbjct: 176 FTSGDKSA 183


>ref|NP_081746.1| serine/threonine-protein kinase PAK 4 [Mus musculus].
          Length = 593

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 23/55 (41%), Positives = 33/55 (60%)
 Frame = +1

Query: 484 RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNPQAVLD 648
           R EIS PS+FEH +H GFD    +FTG+P QW  L++       E  + P+ ++D
Sbjct: 8   RVEISAPSNFEHRVHTGFDQHEQKFTGLPRQWQSLIE-------ESARRPKPLID 55


>ref|NP_001139326.1| serine/threonine-protein kinase PAK 6 [Mus musculus].
          Length = 682

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 19/38 (50%), Positives = 25/38 (65%)
 Frame = +1

Query: 484 RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQT 597
           RPEIS P +F+H +H  FD   G+F G+P QW  +L T
Sbjct: 9   RPEISAPQNFQHRVHTSFDPKEGKFVGLPPQWQNILDT 46


>ref|NP_001028426.2| serine/threonine-protein kinase PAK 6 [Mus musculus].
          Length = 682

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 19/38 (50%), Positives = 25/38 (65%)
 Frame = +1

Query: 484 RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQT 597
           RPEIS P +F+H +H  FD   G+F G+P QW  +L T
Sbjct: 9   RPEISAPQNFQHRVHTSFDPKEGKFVGLPPQWQNILDT 46


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,441,989
Number of extensions: 729859
Number of successful extensions: 2601
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 2585
Number of HSP's successfully gapped: 12
Length of query: 330
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 228
Effective length of database: 12,553,887
Effective search space: 2862286236
Effective search space used: 2862286236
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008988
         (992 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_002568.2| serine/threonine-protein kinase PAK 2 [Homo sap...   266   2e-71
Alignment   gi|NP_001122092.1| serine/threonine-protein kinase PAK 1 isofor...   179   3e-45
Alignment   gi|NP_002567.3| serine/threonine-protein kinase PAK 1 isoform 2...   179   3e-45
Alignment   gi|NP_001121639.1| serine/threonine-protein kinase PAK 3 isofor...   176   4e-44
Alignment   gi|NP_001121638.1| serine/threonine-protein kinase PAK 3 isofor...   176   4e-44
Alignment   gi|NP_002569.1| serine/threonine-protein kinase PAK 3 isoform a...   176   4e-44
Alignment   gi|NP_001121645.1| serine/threonine-protein kinase PAK 3 isofor...   166   4e-41
Alignment   gi|NP_001121644.1| serine/threonine-protein kinase PAK 3 isofor...   163   2e-40
Alignment   gi|NP_001121640.1| serine/threonine-protein kinase PAK 3 isofor...   157   1e-38
Alignment   gi|NP_001122101.1| serine/threonine-protein kinase PAK 6 [Homo ...    50   2e-06

>ref|NP_002568.2| serine/threonine-protein kinase PAK 2 [Homo sapiens].
          Length = 524

 Score =  266 bits (680), Expect = 2e-71
 Identities = 132/147 (89%), Positives = 133/147 (90%)
 Frame = +1

Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
           MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPR+KIISIF   
Sbjct: 1   MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRHKIISIFSGT 60

Query: 454 XXXXXXXXXXRPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 633
                     RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP
Sbjct: 61  EKGSKKKEKERPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 120

Query: 634 QAVLDVLKFYDSNTVKQKYLSFTPPGK 714
           QAVLDVLKFYDSNTVKQKYLSFTPP K
Sbjct: 121 QAVLDVLKFYDSNTVKQKYLSFTPPEK 147


>ref|NP_001122092.1| serine/threonine-protein kinase PAK 1 isoform 1 [Homo sapiens].
          Length = 553

 Score =  179 bits (454), Expect = 3e-45
 Identities = 92/146 (63%), Positives = 106/146 (72%), Gaps = 3/146 (2%)
 Frame = +1

Query: 274 MSDNG-ELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXX 450
           MS+NG +++DKPPAPP+R +ST+   G KD  + NH  KPLP  PEEKK +++       
Sbjct: 1   MSNNGLDIQDKPPAPPMRNTSTMIGAGSKDAGTLNHGSKPLPPNPEEKKKKDRFYRSILP 60

Query: 451 XXXXXXXXXXXRPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKN 630
                      RPEIS PSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITK EQKKN
Sbjct: 61  GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKSEQKKN 120

Query: 631 PQAVLDVLKFYDSNTV--KQKYLSFT 702
           PQAVLDVL+FY+S      QKY+SFT
Sbjct: 121 PQAVLDVLEFYNSKKTSNSQKYMSFT 146


>ref|NP_002567.3| serine/threonine-protein kinase PAK 1 isoform 2 [Homo sapiens].
          Length = 545

 Score =  179 bits (454), Expect = 3e-45
 Identities = 92/146 (63%), Positives = 106/146 (72%), Gaps = 3/146 (2%)
 Frame = +1

Query: 274 MSDNG-ELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXX 450
           MS+NG +++DKPPAPP+R +ST+   G KD  + NH  KPLP  PEEKK +++       
Sbjct: 1   MSNNGLDIQDKPPAPPMRNTSTMIGAGSKDAGTLNHGSKPLPPNPEEKKKKDRFYRSILP 60

Query: 451 XXXXXXXXXXXRPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKN 630
                      RPEIS PSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITK EQKKN
Sbjct: 61  GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKSEQKKN 120

Query: 631 PQAVLDVLKFYDSNTV--KQKYLSFT 702
           PQAVLDVL+FY+S      QKY+SFT
Sbjct: 121 PQAVLDVLEFYNSKKTSNSQKYMSFT 146


>ref|NP_001121639.1| serine/threonine-protein kinase PAK 3 isoform a [Homo sapiens].
          Length = 544

 Score =  176 bits (445), Expect = 4e-44
 Identities = 95/152 (62%), Positives = 108/152 (71%), Gaps = 3/152 (1%)
 Frame = +1

Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
           MSD  + E+KPPAPP+RM+S       +D  + NHS KPLP  PEEK  + ++ SIF   
Sbjct: 1   MSDGLDNEEKPPAPPLRMNSN-----NRDSSALNHSSKPLPMAPEEKNKKARLRSIFPGG 55

Query: 454 XXXXXXXXXX-RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKN 630
                      RPEIS PSDFEHTIHVGFDAVTGEFTG+PEQWARLLQTSNITKLEQKKN
Sbjct: 56  GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTGIPEQWARLLQTSNITKLEQKKN 115

Query: 631 PQAVLDVLKFYDSNTV--KQKYLSFTPPGKTS 720
           PQAVLDVLKFYDS      QKY+SFT   K++
Sbjct: 116 PQAVLDVLKFYDSKETVNNQKYMSFTSGDKSA 147


>ref|NP_001121638.1| serine/threonine-protein kinase PAK 3 isoform a [Homo sapiens].
          Length = 544

 Score =  176 bits (445), Expect = 4e-44
 Identities = 95/152 (62%), Positives = 108/152 (71%), Gaps = 3/152 (1%)
 Frame = +1

Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
           MSD  + E+KPPAPP+RM+S       +D  + NHS KPLP  PEEK  + ++ SIF   
Sbjct: 1   MSDGLDNEEKPPAPPLRMNSN-----NRDSSALNHSSKPLPMAPEEKNKKARLRSIFPGG 55

Query: 454 XXXXXXXXXX-RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKN 630
                      RPEIS PSDFEHTIHVGFDAVTGEFTG+PEQWARLLQTSNITKLEQKKN
Sbjct: 56  GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTGIPEQWARLLQTSNITKLEQKKN 115

Query: 631 PQAVLDVLKFYDSNTV--KQKYLSFTPPGKTS 720
           PQAVLDVLKFYDS      QKY+SFT   K++
Sbjct: 116 PQAVLDVLKFYDSKETVNNQKYMSFTSGDKSA 147


>ref|NP_002569.1| serine/threonine-protein kinase PAK 3 isoform a [Homo sapiens].
          Length = 544

 Score =  176 bits (445), Expect = 4e-44
 Identities = 95/152 (62%), Positives = 108/152 (71%), Gaps = 3/152 (1%)
 Frame = +1

Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
           MSD  + E+KPPAPP+RM+S       +D  + NHS KPLP  PEEK  + ++ SIF   
Sbjct: 1   MSDGLDNEEKPPAPPLRMNSN-----NRDSSALNHSSKPLPMAPEEKNKKARLRSIFPGG 55

Query: 454 XXXXXXXXXX-RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKN 630
                      RPEIS PSDFEHTIHVGFDAVTGEFTG+PEQWARLLQTSNITKLEQKKN
Sbjct: 56  GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTGIPEQWARLLQTSNITKLEQKKN 115

Query: 631 PQAVLDVLKFYDSNTV--KQKYLSFTPPGKTS 720
           PQAVLDVLKFYDS      QKY+SFT   K++
Sbjct: 116 PQAVLDVLKFYDSKETVNNQKYMSFTSGDKSA 147


>ref|NP_001121645.1| serine/threonine-protein kinase PAK 3 isoform d [Homo sapiens].
          Length = 559

 Score =  166 bits (419), Expect = 4e-41
 Identities = 95/167 (56%), Positives = 108/167 (64%), Gaps = 18/167 (10%)
 Frame = +1

Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
           MSD  + E+KPPAPP+RM+S       +D  + NHS KPLP  PEEK  + ++ SIF   
Sbjct: 1   MSDGLDNEEKPPAPPLRMNSN-----NRDSSALNHSSKPLPMAPEEKNKKARLRSIFPGG 55

Query: 454 XXXXXXXXXX-RPEISPPSDFEHTIHVGFDAVTGEFT---------------GMPEQWAR 585
                      RPEIS PSDFEHTIHVGFDAVTGEFT               G+PEQWAR
Sbjct: 56  GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTPDLYGSQMCPGKLPEGIPEQWAR 115

Query: 586 LLQTSNITKLEQKKNPQAVLDVLKFYDSNTV--KQKYLSFTPPGKTS 720
           LLQTSNITKLEQKKNPQAVLDVLKFYDS      QKY+SFT   K++
Sbjct: 116 LLQTSNITKLEQKKNPQAVLDVLKFYDSKETVNNQKYMSFTSGDKSA 162


>ref|NP_001121644.1| serine/threonine-protein kinase PAK 3 isoform c [Homo sapiens].
          Length = 565

 Score =  163 bits (413), Expect = 2e-40
 Identities = 95/173 (54%), Positives = 108/173 (62%), Gaps = 24/173 (13%)
 Frame = +1

Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
           MSD  + E+KPPAPP+RM+S       +D  + NHS KPLP  PEEK  + ++ SIF   
Sbjct: 1   MSDGLDNEEKPPAPPLRMNSN-----NRDSSALNHSSKPLPMAPEEKNKKARLRSIFPGG 55

Query: 454 XXXXXXXXXX-RPEISPPSDFEHTIHVGFDAVTGEFT---------------------GM 567
                      RPEIS PSDFEHTIHVGFDAVTGEFT                     G+
Sbjct: 56  GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTNSPFQTSRPVTVASSQSEGKMGI 115

Query: 568 PEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSNTV--KQKYLSFTPPGKTS 720
           PEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDS      QKY+SFT   K++
Sbjct: 116 PEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSKETVNNQKYMSFTSGDKSA 168


>ref|NP_001121640.1| serine/threonine-protein kinase PAK 3 isoform b [Homo sapiens].
          Length = 580

 Score =  157 bits (398), Expect = 1e-38
 Identities = 95/188 (50%), Positives = 108/188 (57%), Gaps = 39/188 (20%)
 Frame = +1

Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
           MSD  + E+KPPAPP+RM+S       +D  + NHS KPLP  PEEK  + ++ SIF   
Sbjct: 1   MSDGLDNEEKPPAPPLRMNSN-----NRDSSALNHSSKPLPMAPEEKNKKARLRSIFPGG 55

Query: 454 XXXXXXXXXX-RPEISPPSDFEHTIHVGFDAVTGEFT----------------------- 561
                      RPEIS PSDFEHTIHVGFDAVTGEFT                       
Sbjct: 56  GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTNSPFQTSRPVTVASSQSEGKMPD 115

Query: 562 -------------GMPEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSNTV--KQKYLS 696
                        G+PEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDS      QKY+S
Sbjct: 116 LYGSQMCPGKLPEGIPEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSKETVNNQKYMS 175

Query: 697 FTPPGKTS 720
           FT   K++
Sbjct: 176 FTSGDKSA 183


>ref|NP_001122101.1| serine/threonine-protein kinase PAK 6 [Homo sapiens].
          Length = 681

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 19/38 (50%), Positives = 25/38 (65%)
 Frame = +1

Query: 484 RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQT 597
           RPEIS P +F+H +H  FD   G+F G+P QW  +L T
Sbjct: 9   RPEISAPQNFQHRVHTSFDPKEGKFVGLPPQWQNILDT 46


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,721,856
Number of extensions: 864525
Number of successful extensions: 2995
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 2977
Number of HSP's successfully gapped: 20
Length of query: 330
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,901,872
Effective search space: 3382724944
Effective search space used: 3382724944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008988
         (992 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr13                                                         777   0.0  
Sscrofa_Chr09                                                          88   1e-14

>Sscrofa_Chr13 
||          Length = 218635234

 Score =  777 bits (392), Expect = 0.0
 Identities = 417/424 (98%), Gaps = 1/424 (0%)
 Strand = Plus / Minus

                                                                             
Query: 562       ggcatgccagaacagtgggctcgattattacagacctccaatatcaccaaactagagcaa 621
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142945412 ggcatgccagaacagtgggctcgattattacagacctccaatatcaccaaactagagcaa 142945353

                                                                             
Query: 622       aagaagaatcctcaggctgtgctggatgtcttaaagttctacgactccaacacagtgaag 681
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142945352 aagaagaatcctcaggctgtgctggatgtcttaaagttctacgactccaacacagtgaag 142945293

                                                                             
Query: 682       cagaaatacctgagctttactcctcctggtaagacatcagacctggtaaaaggctggctt 741
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142945292 cagaaatacctgagctttactcctcctggtaagacatcagacctggtaaaaggctggctt 142945233

                                                                             
Query: 742       aaatgggatcacagagttggggagcacttgtagataaaaagattgcttctggaaaaatca 801
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142945232 aaatgggatcacagagttggggagcacttgtagataaaaagattgcttctggaaaaatca 142945173

                                                                             
Query: 802       aaagctaagctgcggtggttgcctcagctttttcccctgcgtagatctgtcttttgtaaa 861
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142945172 aaagctaagctgcggtggttgcctcagctttttcccctgcgtagatctgtcttttgtaaa 142945113

                                                                             
Query: 862       ctgatgtgggcagctcttaggcataatttggaatctgggggattatatcaatttcctggt 921
                 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 142945112 ctgatgtgggcagctcttaggcataatttggaatct-ggggattatatcaatttcctggt 142945054

                                                                             
Query: 922       tttgccaaaagtgggtgttttgggcttttggtgcctcttcactgctttttcatgagtccc 981
                 ||||||||||||||||||||||| |||||| || |||||||||||||||  |||||| ||
Sbjct: 142945053 tttgccaaaagtgggtgttttggtcttttgttgtctcttcactgcttttcaatgagttcc 142944994

                     
Query: 982       agca 985
                 ||||
Sbjct: 142944993 agca 142944990



 Score =  375 bits (189), Expect = e-101
 Identities = 203/210 (96%)
 Strand = Plus / Minus

                                                                             
Query: 252       ggccgtatcataattctgaatcatgtctgataacggagaactggaagacaagcctccagc 311
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142963934 ggccgtatcataattctgaatcatgtctgataacggagaactggaagacaagcctccagc 142963875

                                                                             
Query: 312       accccctgtgcgaatgagcagtaccatttttagtactggaggcaaagaccctttgtcagc 371
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142963874 accccctgtgcgaatgagcagtaccatttttagtactggaggcaaagaccctttgtcagc 142963815

                                                                             
Query: 372       caatcacagtttgaaacctttgccctctgttccagaggnnnnnnngcccaggaataaaat 431
                 ||||||||||||||||||||||||||||||||||||||       |||||||||||||||
Sbjct: 142963814 caatcacagtttgaaacctttgccctctgttccagaggaaaaaaagcccaggaataaaat 142963755

                                               
Query: 432       catctctatattctcaagcacagagaaagg 461
                 ||||||||||||||||||||||||||||||
Sbjct: 142963754 catctctatattctcaagcacagagaaagg 142963725



 Score =  375 bits (189), Expect = e-101
 Identities = 203/210 (96%)
 Strand = Plus / Minus

                                                                             
Query: 252       ggccgtatcataattctgaatcatgtctgataacggagaactggaagacaagcctccagc 311
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142982617 ggccgtatcataattctgaatcatgtctgataacggagaactggaagacaagcctccagc 142982558

                                                                             
Query: 312       accccctgtgcgaatgagcagtaccatttttagtactggaggcaaagaccctttgtcagc 371
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142982557 accccctgtgcgaatgagcagtaccatttttagtactggaggcaaagaccctttgtcagc 142982498

                                                                             
Query: 372       caatcacagtttgaaacctttgccctctgttccagaggnnnnnnngcccaggaataaaat 431
                 ||||||||||||||||||||||||||||||||||||||       |||||||||||||||
Sbjct: 142982497 caatcacagtttgaaacctttgccctctgttccagaggaaaaaaagcccaggaataaaat 142982438

                                               
Query: 432       catctctatattctcaagcacagagaaagg 461
                 ||||||||||||||||||||||||||||||
Sbjct: 142982437 catctctatattctcaagcacagagaaagg 142982408



 Score =  206 bits (104), Expect = 2e-50
 Identities = 104/104 (100%)
 Strand = Plus / Minus

                                                                             
Query: 459       aggaagtaagaagaaagagaaggaaaggccagaaatttctcctccgtctgattttgagca 518
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142945834 aggaagtaagaagaaagagaaggaaaggccagaaatttctcctccgtctgattttgagca 142945775

                                                             
Query: 519       caccatccatgttggttttgatgctgtcactggagaattcactg 562
                 ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142945774 caccatccatgttggttttgatgctgtcactggagaattcactg 142945731



 Score =  178 bits (90), Expect = 4e-42
 Identities = 90/90 (100%)
 Strand = Plus / Minus

                                                                             
Query: 164       cgtcgctctcttgctcggggcggctcctgatcccgccaggagctcggccggaggctcctc 223
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143031174 cgtcgctctcttgctcggggcggctcctgatcccgccaggagctcggccggaggctcctc 143031115

                                               
Query: 224       gctggggcggggacctttcctcgcctgggg 253
                 ||||||||||||||||||||||||||||||
Sbjct: 143031114 gctggggcggggacctttcctcgcctgggg 143031085



 Score =  103 bits (52), Expect = 2e-19
 Identities = 52/52 (100%)
 Strand = Plus / Minus

                                                                     
Query: 2         ttcccctctggcctgggccgtcgccattgccgaaggctccctgccctcccct 53
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143031336 ttcccctctggcctgggccgtcgccattgccgaaggctccctgccctcccct 143031285



 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                              
Query: 88        tagcagtagaagccgcggcgctccagcgc 116
                 |||||||||||||||||||||||||||||
Sbjct: 143031250 tagcagtagaagccgcggcgctccagcgc 143031222


>Sscrofa_Chr09 
||          Length = 153670197

 Score = 87.7 bits (44), Expect = 1e-14
 Identities = 71/80 (88%)
 Strand = Plus / Minus

                                                                            
Query: 469      aagaaagagaaggaaaggccagaaatttctcctccgtctgattttgagcacaccatccat 528
                ||||| || |||||| ||||||| ||||||| ||| || |||||||||||||| || |||
Sbjct: 13028528 aagaaggaaaaggaacggccagagatttctcttccttcagattttgagcacacaattcat 13028469

                                    
Query: 529      gttggttttgatgctgtcac 548
                ||||||||||||||||||||
Sbjct: 13028468 gttggttttgatgctgtcac 13028449


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,760,795
Number of extensions: 326
Number of successful extensions: 326
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 8
Length of query: 992
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 971
Effective length of database: 2,808,413,156
Effective search space: 2726969174476
Effective search space used: 2726969174476
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)