Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008988
(992 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193656.1| similar to serine/threonine kinase [Bos taur... 268 5e-72
Alignment gi|NP_001070366.1| serine/threonine-protein kinase PAK 1 [Bos t... 179 3e-45
Alignment gi|XP_002707289.1| PREDICTED: p21-activated kinase 3 [Bos tauru... 176 4e-44
Alignment gi|XP_001252146.3| PREDICTED: p21-activated kinase 3 isoform 1 ... 166 4e-41
Alignment gi|XP_002707288.1| PREDICTED: p21-activated kinase 3 [Bos tauru... 163 2e-40
Alignment gi|NP_001192465.1| serine/threonine-protein kinase PAK 3 [Bos t... 157 1e-38
Alignment gi|XP_002699988.1| PREDICTED: p21 protein (Cdc42/Rac)-activated... 116 3e-26
Alignment gi|XP_002699942.1| PREDICTED: p21-activated kinase 3-like [Bos ... 56 6e-08
Alignment gi|NP_001069652.1| serine/threonine-protein kinase PAK 4 [Bos t... 51 2e-06
Alignment gi|XP_002706601.1| PREDICTED: p21-activated kinase 4 [Bos tauru... 51 2e-06
>ref|NP_001193656.1| similar to serine/threonine kinase [Bos taurus].
Length = 524
Score = 268 bits (685), Expect = 5e-72
Identities = 133/147 (90%), Positives = 133/147 (90%)
Frame = +1
Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIF
Sbjct: 1 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFSST 60
Query: 454 XXXXXXXXXXRPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 633
RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP
Sbjct: 61 EKGSKKKEKERPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 120
Query: 634 QAVLDVLKFYDSNTVKQKYLSFTPPGK 714
QAVLDVLKFYDSNTVKQKYLSFTPP K
Sbjct: 121 QAVLDVLKFYDSNTVKQKYLSFTPPEK 147
>ref|NP_001070366.1| serine/threonine-protein kinase PAK 1 [Bos taurus].
Length = 544
Score = 179 bits (455), Expect = 3e-45
Identities = 92/146 (63%), Positives = 106/146 (72%), Gaps = 3/146 (2%)
Frame = +1
Query: 274 MSDNG-ELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXX 450
MS+NG +++DKPPAPP+R +ST+ G KD + NH KPLP PEEKK +++
Sbjct: 1 MSNNGLDIQDKPPAPPMRNTSTMIGAGSKDAGTLNHGSKPLPPNPEEKKKKDRFYRAILP 60
Query: 451 XXXXXXXXXXXRPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKN 630
RPEIS PSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITK EQKKN
Sbjct: 61 GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKSEQKKN 120
Query: 631 PQAVLDVLKFYDSNTV--KQKYLSFT 702
PQAVLDVL+FY+S QKY+SFT
Sbjct: 121 PQAVLDVLEFYNSKKTSNSQKYMSFT 146
>ref|XP_002707289.1| PREDICTED: p21-activated kinase 3 [Bos taurus].
Length = 544
Score = 176 bits (445), Expect = 4e-44
Identities = 95/152 (62%), Positives = 108/152 (71%), Gaps = 3/152 (1%)
Frame = +1
Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
MSD + E+KPPAPP+RM+S +D + NHS KPLP PEEK + ++ SIF
Sbjct: 1 MSDGLDNEEKPPAPPLRMNSN-----NRDSSALNHSSKPLPMAPEEKNKKARLRSIFPGG 55
Query: 454 XXXXXXXXXX-RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKN 630
RPEIS PSDFEHTIHVGFDAVTGEFTG+PEQWARLLQTSNITKLEQKKN
Sbjct: 56 GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTGIPEQWARLLQTSNITKLEQKKN 115
Query: 631 PQAVLDVLKFYDSNTV--KQKYLSFTPPGKTS 720
PQAVLDVLKFYDS QKY+SFT K++
Sbjct: 116 PQAVLDVLKFYDSKETVNNQKYMSFTSGDKSA 147
>ref|XP_001252146.3| PREDICTED: p21-activated kinase 3 isoform 1 [Bos taurus].
Length = 559
Score = 166 bits (419), Expect = 4e-41
Identities = 95/167 (56%), Positives = 108/167 (64%), Gaps = 18/167 (10%)
Frame = +1
Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
MSD + E+KPPAPP+RM+S +D + NHS KPLP PEEK + ++ SIF
Sbjct: 1 MSDGLDNEEKPPAPPLRMNSN-----NRDSSALNHSSKPLPMAPEEKNKKARLRSIFPGG 55
Query: 454 XXXXXXXXXX-RPEISPPSDFEHTIHVGFDAVTGEFT---------------GMPEQWAR 585
RPEIS PSDFEHTIHVGFDAVTGEFT G+PEQWAR
Sbjct: 56 GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTPDLYGSQMCPGKLPEGIPEQWAR 115
Query: 586 LLQTSNITKLEQKKNPQAVLDVLKFYDSNTV--KQKYLSFTPPGKTS 720
LLQTSNITKLEQKKNPQAVLDVLKFYDS QKY+SFT K++
Sbjct: 116 LLQTSNITKLEQKKNPQAVLDVLKFYDSKETVNNQKYMSFTSGDKSA 162
>ref|XP_002707288.1| PREDICTED: p21-activated kinase 3 [Bos taurus].
Length = 565
Score = 163 bits (413), Expect = 2e-40
Identities = 95/173 (54%), Positives = 108/173 (62%), Gaps = 24/173 (13%)
Frame = +1
Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
MSD + E+KPPAPP+RM+S +D + NHS KPLP PEEK + ++ SIF
Sbjct: 1 MSDGLDNEEKPPAPPLRMNSN-----NRDSSALNHSSKPLPMAPEEKNKKARLRSIFPGG 55
Query: 454 XXXXXXXXXX-RPEISPPSDFEHTIHVGFDAVTGEFT---------------------GM 567
RPEIS PSDFEHTIHVGFDAVTGEFT G+
Sbjct: 56 GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTNSPFQTSRPVTVASSQSEGKMGI 115
Query: 568 PEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSNTV--KQKYLSFTPPGKTS 720
PEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDS QKY+SFT K++
Sbjct: 116 PEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSKETVNNQKYMSFTSGDKSA 168
>ref|NP_001192465.1| serine/threonine-protein kinase PAK 3 [Bos taurus].
Length = 580
Score = 157 bits (398), Expect = 1e-38
Identities = 95/188 (50%), Positives = 108/188 (57%), Gaps = 39/188 (20%)
Frame = +1
Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
MSD + E+KPPAPP+RM+S +D + NHS KPLP PEEK + ++ SIF
Sbjct: 1 MSDGLDNEEKPPAPPLRMNSN-----NRDSSALNHSSKPLPMAPEEKNKKARLRSIFPGG 55
Query: 454 XXXXXXXXXX-RPEISPPSDFEHTIHVGFDAVTGEFT----------------------- 561
RPEIS PSDFEHTIHVGFDAVTGEFT
Sbjct: 56 GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTNSPFQTSRPVTVASSQSEGKMPD 115
Query: 562 -------------GMPEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSNTV--KQKYLS 696
G+PEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDS QKY+S
Sbjct: 116 LYGSQMCPGKLPEGIPEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSKETVNNQKYMS 175
Query: 697 FTPPGKTS 720
FT K++
Sbjct: 176 FTSGDKSA 183
>ref|XP_002699988.1| PREDICTED: p21 protein (Cdc42/Rac)-activated kinase 3 [Bos taurus].
Length = 668
Score = 116 bits (290), Expect = 3e-26
Identities = 67/117 (57%), Positives = 71/117 (60%), Gaps = 38/117 (32%)
Frame = +1
Query: 484 RPEISPPSDFEHTIHVGFDAVTGEFT---------------------------------- 561
RPEIS PSDFEHTIHVGFDAVTGEFT
Sbjct: 155 RPEISLPSDFEHTIHVGFDAVTGEFTNSPFQTSRPVTVASSQSEGKMPDLYGSQMCPGKL 214
Query: 562 --GMPEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSNTV--KQKYLSFTPPGKTS 720
G+PEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDS QKY+SFT K++
Sbjct: 215 PEGIPEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSKETVNNQKYMSFTSGDKSA 271
>ref|XP_002699942.1| PREDICTED: p21-activated kinase 3-like [Bos taurus].
Length = 66
Score = 55.8 bits (133), Expect = 6e-08
Identities = 28/57 (49%), Positives = 37/57 (64%)
Frame = +1
Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIF 444
MSD + E+KPPAPP+RM+S +D + NHS KPLP PEEK + ++ SIF
Sbjct: 1 MSDGLDNEEKPPAPPLRMNSN-----NRDSSALNHSSKPLPMAPEEKNKKARLRSIF 52
>ref|NP_001069652.1| serine/threonine-protein kinase PAK 4 [Bos taurus].
Length = 593
Score = 50.8 bits (120), Expect = 2e-06
Identities = 23/55 (41%), Positives = 33/55 (60%)
Frame = +1
Query: 484 RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNPQAVLD 648
R EIS PS+FEH +H GFD +FTG+P QW L++ E + P+ ++D
Sbjct: 8 RVEISAPSNFEHRVHTGFDQHEQKFTGLPRQWQSLIE-------ESARRPKPLID 55
>ref|XP_002706601.1| PREDICTED: p21-activated kinase 4 [Bos taurus].
Length = 333
Score = 50.8 bits (120), Expect = 2e-06
Identities = 23/55 (41%), Positives = 33/55 (60%)
Frame = +1
Query: 484 RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNPQAVLD 648
R EIS PS+FEH +H GFD +FTG+P QW L++ E + P+ ++D
Sbjct: 8 RVEISAPSNFEHRVHTGFDQHEQKFTGLPRQWQSLIE-------ESARRPKPLID 55
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,243,479
Number of extensions: 919352
Number of successful extensions: 2960
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 2942
Number of HSP's successfully gapped: 15
Length of query: 330
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,273,310
Effective search space: 3240041370
Effective search space used: 3240041370
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008988
(992 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_858944.1| PREDICTED: similar to Serine/threonine-protein ... 273 2e-73
Alignment gi|XP_859057.1| PREDICTED: similar to Serine/threonine-protein ... 271 5e-73
Alignment gi|XP_859023.1| PREDICTED: similar to Serine/threonine-protein ... 271 5e-73
Alignment gi|XP_858987.1| PREDICTED: similar to Serine/threonine-protein ... 271 5e-73
Alignment gi|XP_858831.1| PREDICTED: similar to Serine/threonine-protein ... 271 5e-73
Alignment gi|XP_858864.1| PREDICTED: similar to Serine/threonine-protein ... 267 1e-71
Alignment gi|XP_858909.1| PREDICTED: similar to Serine/threonine-protein ... 266 2e-71
Alignment gi|XP_849432.1| PREDICTED: similar to Serine/threonine-protein ... 265 5e-71
Alignment gi|XP_858795.1| PREDICTED: similar to Serine/threonine-protein ... 259 2e-69
Alignment gi|XP_863603.1| PREDICTED: similar to Serine/threonine-protein ... 185 7e-47
>ref|XP_858944.1| PREDICTED: similar to Serine/threonine-protein kinase PAK 2
(p21-activated kinase 2) (PAK-2) isoform 6 [Canis
familiaris].
Length = 542
Score = 273 bits (697), Expect = 2e-73
Identities = 139/169 (82%), Positives = 144/169 (85%), Gaps = 4/169 (2%)
Frame = +1
Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIF
Sbjct: 1 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFSGT 60
Query: 454 XXXXXXXXXXRPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 633
RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP
Sbjct: 61 EKGNKKKEKERPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 120
Query: 634 QAVLDVLKFYDSNTVKQKYLSFTPPGKTS----DLVKGWLKWDHRVGEH 768
QAVLDVLKFYDSNTVKQKYLSFTP GKTS L++ L++ H+ H
Sbjct: 121 QAVLDVLKFYDSNTVKQKYLSFTPTGKTSYNGKRLIQMGLQYCHKKNWH 169
>ref|XP_859057.1| PREDICTED: similar to Serine/threonine-protein kinase PAK 2
(p21-activated kinase 2) (PAK-2) isoform 9 [Canis
familiaris].
Length = 527
Score = 271 bits (694), Expect = 5e-73
Identities = 135/149 (90%), Positives = 135/149 (90%)
Frame = +1
Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIF
Sbjct: 1 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFSGT 60
Query: 454 XXXXXXXXXXRPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 633
RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP
Sbjct: 61 EKGNKKKEKERPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 120
Query: 634 QAVLDVLKFYDSNTVKQKYLSFTPPGKTS 720
QAVLDVLKFYDSNTVKQKYLSFTP GKTS
Sbjct: 121 QAVLDVLKFYDSNTVKQKYLSFTPTGKTS 149
>ref|XP_859023.1| PREDICTED: similar to Serine/threonine-protein kinase PAK 2
(p21-activated kinase 2) (PAK-2) isoform 8 [Canis
familiaris].
Length = 531
Score = 271 bits (694), Expect = 5e-73
Identities = 135/149 (90%), Positives = 135/149 (90%)
Frame = +1
Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIF
Sbjct: 1 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFSGT 60
Query: 454 XXXXXXXXXXRPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 633
RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP
Sbjct: 61 EKGNKKKEKERPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 120
Query: 634 QAVLDVLKFYDSNTVKQKYLSFTPPGKTS 720
QAVLDVLKFYDSNTVKQKYLSFTP GKTS
Sbjct: 121 QAVLDVLKFYDSNTVKQKYLSFTPTGKTS 149
>ref|XP_858987.1| PREDICTED: similar to Serine/threonine-protein kinase PAK 2
(p21-activated kinase 2) (PAK-2) isoform 7 [Canis
familiaris].
Length = 534
Score = 271 bits (694), Expect = 5e-73
Identities = 135/149 (90%), Positives = 135/149 (90%)
Frame = +1
Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIF
Sbjct: 1 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFSGT 60
Query: 454 XXXXXXXXXXRPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 633
RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP
Sbjct: 61 EKGNKKKEKERPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 120
Query: 634 QAVLDVLKFYDSNTVKQKYLSFTPPGKTS 720
QAVLDVLKFYDSNTVKQKYLSFTP GKTS
Sbjct: 121 QAVLDVLKFYDSNTVKQKYLSFTPTGKTS 149
>ref|XP_858831.1| PREDICTED: similar to Serine/threonine-protein kinase PAK 2
(p21-activated kinase 2) (PAK-2) isoform 3 [Canis
familiaris].
Length = 529
Score = 271 bits (694), Expect = 5e-73
Identities = 135/149 (90%), Positives = 135/149 (90%)
Frame = +1
Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIF
Sbjct: 1 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFSGT 60
Query: 454 XXXXXXXXXXRPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 633
RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP
Sbjct: 61 EKGNKKKEKERPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 120
Query: 634 QAVLDVLKFYDSNTVKQKYLSFTPPGKTS 720
QAVLDVLKFYDSNTVKQKYLSFTP GKTS
Sbjct: 121 QAVLDVLKFYDSNTVKQKYLSFTPTGKTS 149
>ref|XP_858864.1| PREDICTED: similar to Serine/threonine-protein kinase PAK 2
(p21-activated kinase 2) (PAK-2) isoform 4 [Canis
familiaris].
Length = 519
Score = 267 bits (683), Expect = 1e-71
Identities = 135/149 (90%), Positives = 135/149 (90%)
Frame = +1
Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIF
Sbjct: 1 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFSGT 60
Query: 454 XXXXXXXXXXRPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 633
RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP
Sbjct: 61 EKEKE-----RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 115
Query: 634 QAVLDVLKFYDSNTVKQKYLSFTPPGKTS 720
QAVLDVLKFYDSNTVKQKYLSFTP GKTS
Sbjct: 116 QAVLDVLKFYDSNTVKQKYLSFTPTGKTS 144
>ref|XP_858909.1| PREDICTED: similar to Serine/threonine-protein kinase PAK 2
(p21-activated kinase 2) (PAK-2) isoform 5 [Canis
familiaris].
Length = 515
Score = 266 bits (680), Expect = 2e-71
Identities = 132/146 (90%), Positives = 132/146 (90%)
Frame = +1
Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIF
Sbjct: 1 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFSGT 60
Query: 454 XXXXXXXXXXRPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 633
RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP
Sbjct: 61 EKGNKKKEKERPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 120
Query: 634 QAVLDVLKFYDSNTVKQKYLSFTPPG 711
QAVLDVLKFYDSNTVKQKYLSFTP G
Sbjct: 121 QAVLDVLKFYDSNTVKQKYLSFTPTG 146
>ref|XP_849432.1| PREDICTED: similar to Serine/threonine-protein kinase PAK 2
(p21-activated kinase 2) (PAK-2) (Gamma-PAK) (p62-PAK)
isoform 1 [Canis familiaris].
Length = 524
Score = 265 bits (677), Expect = 5e-71
Identities = 132/147 (89%), Positives = 132/147 (89%)
Frame = +1
Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIF
Sbjct: 1 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFSGT 60
Query: 454 XXXXXXXXXXRPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 633
RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP
Sbjct: 61 EKGSKKKEKERPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 120
Query: 634 QAVLDVLKFYDSNTVKQKYLSFTPPGK 714
QAVLDVLKFYDSNTVKQKYLSFTP K
Sbjct: 121 QAVLDVLKFYDSNTVKQKYLSFTPTEK 147
>ref|XP_858795.1| PREDICTED: similar to Serine/threonine-protein kinase PAK 2
(p21-activated kinase 2) (PAK-2) isoform 2 [Canis
familiaris].
Length = 553
Score = 259 bits (663), Expect = 2e-69
Identities = 137/179 (76%), Positives = 137/179 (76%), Gaps = 25/179 (13%)
Frame = +1
Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIF
Sbjct: 1 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFSGT 60
Query: 454 XXXXXXXXXXRPEISPPSDFEHTIHVGFDAVTGEFT------------------------ 561
RPEISPPSDFEHTIHVGFDAVTGEFT
Sbjct: 61 EKGNKKKEKERPEISPPSDFEHTIHVGFDAVTGEFTVSLPSWDSFMGCGLLYLCLREMSP 120
Query: 562 -GMPEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSNTVKQKYLSFTPPGKTSDLVKG 735
GMPEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSNTVKQKYLSFTP GKTS KG
Sbjct: 121 LGMPEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSNTVKQKYLSFTPTGKTSYNAKG 179
>ref|XP_863603.1| PREDICTED: similar to Serine/threonine-protein kinase PAK 3
(p21-activated kinase 3) (PAK-3) (Beta-PAK) (p65-PAK)
isoform 12 [Canis familiaris].
Length = 533
Score = 185 bits (469), Expect = 7e-47
Identities = 97/151 (64%), Positives = 110/151 (72%), Gaps = 2/151 (1%)
Frame = +1
Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
MSD+ + E+KPPAPP+RM+S +D + NHS KPLP PEEK + ++ SIF
Sbjct: 1 MSDSLDNEEKPPAPPLRMNSN-----NRDSSALNHSSKPLPMAPEEKNKKARLRSIFPGG 55
Query: 454 XXXXXXXXXXRPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 633
RPEIS PSDFEHTIHVGFDAVTGEFTG+PEQWARLLQTSNITKLEQKKNP
Sbjct: 56 GDKSKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTGIPEQWARLLQTSNITKLEQKKNP 115
Query: 634 QAVLDVLKFYDSNTV--KQKYLSFTPPGKTS 720
QAVLDVLKFYDS QKY+SFT GKT+
Sbjct: 116 QAVLDVLKFYDSKETVNNQKYMSFTSGGKTA 146
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,392,808
Number of extensions: 882627
Number of successful extensions: 3170
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 3133
Number of HSP's successfully gapped: 37
Length of query: 330
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 227
Effective length of database: 15,440,896
Effective search space: 3505083392
Effective search space used: 3505083392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008988
(992 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003132660.2| PREDICTED: serine/threonine-protein kinase P... 268 3e-72
Alignment gi|XP_003129732.2| PREDICTED: serine/threonine-protein kinase P... 179 2e-45
Alignment gi|XP_003361678.1| PREDICTED: serine/threonine-protein kinase P... 157 7e-39
Alignment gi|XP_003355938.1| PREDICTED: serine/threonine-protein kinase P... 50 1e-06
Alignment gi|XP_003355937.1| PREDICTED: serine/threonine-protein kinase P... 50 1e-06
Alignment gi|XP_003353453.1| PREDICTED: serine/threonine-protein kinase P... 50 1e-06
Alignment gi|XP_001928687.3| PREDICTED: serine/threonine-protein kinase P... 49 4e-06
>ref|XP_003132660.2| PREDICTED: serine/threonine-protein kinase PAK 2-like [Sus scrofa].
Length = 580
Score = 268 bits (685), Expect = 3e-72
Identities = 133/147 (90%), Positives = 133/147 (90%)
Frame = +1
Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIF
Sbjct: 1 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFSST 60
Query: 454 XXXXXXXXXXRPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 633
RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP
Sbjct: 61 EKGSKKKEKERPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 120
Query: 634 QAVLDVLKFYDSNTVKQKYLSFTPPGK 714
QAVLDVLKFYDSNTVKQKYLSFTPP K
Sbjct: 121 QAVLDVLKFYDSNTVKQKYLSFTPPEK 147
>ref|XP_003129732.2| PREDICTED: serine/threonine-protein kinase PAK 1-like, partial [Sus
scrofa].
Length = 371
Score = 179 bits (454), Expect = 2e-45
Identities = 92/146 (63%), Positives = 106/146 (72%), Gaps = 3/146 (2%)
Frame = +1
Query: 274 MSDNG-ELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXX 450
MS+NG +++DKPPAPP+R +ST+ G KD + NH KPLP PEEKK +++
Sbjct: 1 MSNNGLDIQDKPPAPPMRNTSTMIGAGSKDAGTLNHGSKPLPPNPEEKKKKDRFYRSILP 60
Query: 451 XXXXXXXXXXXRPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKN 630
RPEIS PSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITK EQKKN
Sbjct: 61 GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKSEQKKN 120
Query: 631 PQAVLDVLKFYDSNTV--KQKYLSFT 702
PQAVLDVL+FY+S QKY+SFT
Sbjct: 121 PQAVLDVLEFYNSKKTSNSQKYMSFT 146
>ref|XP_003361678.1| PREDICTED: serine/threonine-protein kinase PAK 3-like, partial [Sus
scrofa].
Length = 334
Score = 157 bits (398), Expect = 7e-39
Identities = 95/188 (50%), Positives = 108/188 (57%), Gaps = 39/188 (20%)
Frame = +1
Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
MSD + E+KPPAPP+RM+S +D + NHS KPLP PEEK + ++ SIF
Sbjct: 1 MSDGLDNEEKPPAPPLRMNSN-----NRDSSALNHSSKPLPMAPEEKNKKARLRSIFPGG 55
Query: 454 XXXXXXXXXX-RPEISPPSDFEHTIHVGFDAVTGEFT----------------------- 561
RPEIS PSDFEHTIHVGFDAVTGEFT
Sbjct: 56 GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTNSPFQTSRPVTVASSQSEGKMPD 115
Query: 562 -------------GMPEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSNTV--KQKYLS 696
G+PEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDS QKY+S
Sbjct: 116 LYGSQMCPGKLPEGIPEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSKETVNNQKYMS 175
Query: 697 FTPPGKTS 720
FT K++
Sbjct: 176 FTSGDKSA 183
>ref|XP_003355938.1| PREDICTED: serine/threonine-protein kinase PAK 4 isoform 2 [Sus
scrofa].
Length = 437
Score = 50.4 bits (119), Expect = 1e-06
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = +1
Query: 484 RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTS 600
R EIS PS+FEH +H GFD +FTG+P QW L++ S
Sbjct: 8 RVEISAPSNFEHRVHTGFDQNEQKFTGLPRQWQSLIEES 46
>ref|XP_003355937.1| PREDICTED: serine/threonine-protein kinase PAK 4 isoform 1 [Sus
scrofa].
Length = 591
Score = 50.4 bits (119), Expect = 1e-06
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = +1
Query: 484 RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTS 600
R EIS PS+FEH +H GFD +FTG+P QW L++ S
Sbjct: 8 RVEISAPSNFEHRVHTGFDQNEQKFTGLPRQWQSLIEES 46
>ref|XP_003353453.1| PREDICTED: serine/threonine-protein kinase PAK 6-like [Sus scrofa].
Length = 329
Score = 50.4 bits (119), Expect = 1e-06
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = +1
Query: 484 RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQT 597
RPEIS P +F+H +H FD G+F G+P QW +L T
Sbjct: 9 RPEISAPQNFQHRVHTSFDPKEGKFVGLPPQWQNILDT 46
>ref|XP_001928687.3| PREDICTED: serine/threonine-protein kinase PAK 7 [Sus scrofa].
Length = 719
Score = 48.9 bits (115), Expect = 4e-06
Identities = 23/42 (54%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Frame = +1
Query: 490 EISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLL-QTSNITK 612
EIS PS+FEH +H GFD +FTG+P+QW LL T+N K
Sbjct: 10 EISGPSNFEHRVHTGFDPQEQKFTGLPQQWHSLLADTANRPK 51
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,658,755
Number of extensions: 675712
Number of successful extensions: 1898
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1895
Number of HSP's successfully gapped: 8
Length of query: 330
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 231
Effective length of database: 8,879,129
Effective search space: 2051078799
Effective search space used: 2051078799
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008988
(992 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_796300.1| serine/threonine-protein kinase PAK 2 [Mus musc... 268 5e-72
Alignment gi|NP_035165.2| serine/threonine-protein kinase PAK 1 [Mus musc... 179 3e-45
Alignment gi|NP_001181978.1| serine/threonine-protein kinase PAK 3 isofor... 176 3e-44
Alignment gi|NP_032804.2| serine/threonine-protein kinase PAK 3 isoform D... 176 3e-44
Alignment gi|NP_001181977.1| serine/threonine-protein kinase PAK 3 isofor... 166 3e-41
Alignment gi|NP_001181976.1| serine/threonine-protein kinase PAK 3 isofor... 164 1e-40
Alignment gi|NP_001181975.1| serine/threonine-protein kinase PAK 3 isofor... 158 7e-39
Alignment gi|NP_081746.1| serine/threonine-protein kinase PAK 4 [Mus musc... 51 2e-06
Alignment gi|NP_001139326.1| serine/threonine-protein kinase PAK 6 [Mus m... 50 2e-06
Alignment gi|NP_001028426.2| serine/threonine-protein kinase PAK 6 [Mus m... 50 2e-06
>ref|NP_796300.1| serine/threonine-protein kinase PAK 2 [Mus musculus].
Length = 524
Score = 268 bits (685), Expect = 5e-72
Identities = 133/147 (90%), Positives = 133/147 (90%)
Frame = +1
Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIF
Sbjct: 1 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFSGT 60
Query: 454 XXXXXXXXXXRPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 633
RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP
Sbjct: 61 EKGSKKKEKERPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 120
Query: 634 QAVLDVLKFYDSNTVKQKYLSFTPPGK 714
QAVLDVLKFYDSNTVKQKYLSFTPP K
Sbjct: 121 QAVLDVLKFYDSNTVKQKYLSFTPPEK 147
>ref|NP_035165.2| serine/threonine-protein kinase PAK 1 [Mus musculus].
Length = 544
Score = 179 bits (454), Expect = 3e-45
Identities = 92/146 (63%), Positives = 106/146 (72%), Gaps = 3/146 (2%)
Frame = +1
Query: 274 MSDNG-ELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXX 450
MS+NG +++DKPPAPP+R +ST+ G KD + NH KPLP PEEKK +++
Sbjct: 1 MSNNGVDIQDKPPAPPMRNTSTMIGAGSKDTGTLNHGSKPLPPNPEEKKKKDRFYRSILP 60
Query: 451 XXXXXXXXXXXRPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKN 630
RPEIS PSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITK EQKKN
Sbjct: 61 GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKSEQKKN 120
Query: 631 PQAVLDVLKFYDSNTV--KQKYLSFT 702
PQAVLDVL+FY+S QKY+SFT
Sbjct: 121 PQAVLDVLEFYNSKKTSNSQKYMSFT 146
>ref|NP_001181978.1| serine/threonine-protein kinase PAK 3 isoform D [Mus musculus].
Length = 544
Score = 176 bits (446), Expect = 3e-44
Identities = 95/152 (62%), Positives = 109/152 (71%), Gaps = 3/152 (1%)
Frame = +1
Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
MSD+ + E+KPPAPP+RM+S +D + NHS KPLP PEEK + ++ SIF
Sbjct: 1 MSDSLDNEEKPPAPPLRMNSN-----NRDSSALNHSSKPLPMAPEEKNKKARLRSIFPGG 55
Query: 454 XXXXXXXXXX-RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKN 630
RPEIS PSDFEHTIHVGFDAVTGEFTG+PEQWARLLQTSNITKLEQKKN
Sbjct: 56 GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTGIPEQWARLLQTSNITKLEQKKN 115
Query: 631 PQAVLDVLKFYDSNTV--KQKYLSFTPPGKTS 720
PQAVLDVLKFYDS QKY+SFT K++
Sbjct: 116 PQAVLDVLKFYDSKETVNNQKYMSFTSGDKSA 147
>ref|NP_032804.2| serine/threonine-protein kinase PAK 3 isoform D [Mus musculus].
Length = 544
Score = 176 bits (446), Expect = 3e-44
Identities = 95/152 (62%), Positives = 109/152 (71%), Gaps = 3/152 (1%)
Frame = +1
Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
MSD+ + E+KPPAPP+RM+S +D + NHS KPLP PEEK + ++ SIF
Sbjct: 1 MSDSLDNEEKPPAPPLRMNSN-----NRDSSALNHSSKPLPMAPEEKNKKARLRSIFPGG 55
Query: 454 XXXXXXXXXX-RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKN 630
RPEIS PSDFEHTIHVGFDAVTGEFTG+PEQWARLLQTSNITKLEQKKN
Sbjct: 56 GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTGIPEQWARLLQTSNITKLEQKKN 115
Query: 631 PQAVLDVLKFYDSNTV--KQKYLSFTPPGKTS 720
PQAVLDVLKFYDS QKY+SFT K++
Sbjct: 116 PQAVLDVLKFYDSKETVNNQKYMSFTSGDKSA 147
>ref|NP_001181977.1| serine/threonine-protein kinase PAK 3 isoform C [Mus musculus].
Length = 559
Score = 166 bits (420), Expect = 3e-41
Identities = 95/167 (56%), Positives = 109/167 (65%), Gaps = 18/167 (10%)
Frame = +1
Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
MSD+ + E+KPPAPP+RM+S +D + NHS KPLP PEEK + ++ SIF
Sbjct: 1 MSDSLDNEEKPPAPPLRMNSN-----NRDSSALNHSSKPLPMAPEEKNKKARLRSIFPGG 55
Query: 454 XXXXXXXXXX-RPEISPPSDFEHTIHVGFDAVTGEFT---------------GMPEQWAR 585
RPEIS PSDFEHTIHVGFDAVTGEFT G+PEQWAR
Sbjct: 56 GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTPDLYGSQMCPGKLPEGIPEQWAR 115
Query: 586 LLQTSNITKLEQKKNPQAVLDVLKFYDSNTV--KQKYLSFTPPGKTS 720
LLQTSNITKLEQKKNPQAVLDVLKFYDS QKY+SFT K++
Sbjct: 116 LLQTSNITKLEQKKNPQAVLDVLKFYDSKETVNNQKYMSFTSGDKSA 162
>ref|NP_001181976.1| serine/threonine-protein kinase PAK 3 isoform B [Mus musculus].
Length = 565
Score = 164 bits (414), Expect = 1e-40
Identities = 95/173 (54%), Positives = 109/173 (63%), Gaps = 24/173 (13%)
Frame = +1
Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
MSD+ + E+KPPAPP+RM+S +D + NHS KPLP PEEK + ++ SIF
Sbjct: 1 MSDSLDNEEKPPAPPLRMNSN-----NRDSSALNHSSKPLPMAPEEKNKKARLRSIFPGG 55
Query: 454 XXXXXXXXXX-RPEISPPSDFEHTIHVGFDAVTGEFT---------------------GM 567
RPEIS PSDFEHTIHVGFDAVTGEFT G+
Sbjct: 56 GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTNSPFQTSRPVTVASSQSEGKMGI 115
Query: 568 PEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSNTV--KQKYLSFTPPGKTS 720
PEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDS QKY+SFT K++
Sbjct: 116 PEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSKETVNNQKYMSFTSGDKSA 168
>ref|NP_001181975.1| serine/threonine-protein kinase PAK 3 isoform A [Mus musculus].
Length = 580
Score = 158 bits (399), Expect = 7e-39
Identities = 95/188 (50%), Positives = 109/188 (57%), Gaps = 39/188 (20%)
Frame = +1
Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
MSD+ + E+KPPAPP+RM+S +D + NHS KPLP PEEK + ++ SIF
Sbjct: 1 MSDSLDNEEKPPAPPLRMNSN-----NRDSSALNHSSKPLPMAPEEKNKKARLRSIFPGG 55
Query: 454 XXXXXXXXXX-RPEISPPSDFEHTIHVGFDAVTGEFT----------------------- 561
RPEIS PSDFEHTIHVGFDAVTGEFT
Sbjct: 56 GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTNSPFQTSRPVTVASSQSEGKMPD 115
Query: 562 -------------GMPEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSNTV--KQKYLS 696
G+PEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDS QKY+S
Sbjct: 116 LYGSQMCPGKLPEGIPEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSKETVNNQKYMS 175
Query: 697 FTPPGKTS 720
FT K++
Sbjct: 176 FTSGDKSA 183
>ref|NP_081746.1| serine/threonine-protein kinase PAK 4 [Mus musculus].
Length = 593
Score = 50.8 bits (120), Expect = 2e-06
Identities = 23/55 (41%), Positives = 33/55 (60%)
Frame = +1
Query: 484 RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNPQAVLD 648
R EIS PS+FEH +H GFD +FTG+P QW L++ E + P+ ++D
Sbjct: 8 RVEISAPSNFEHRVHTGFDQHEQKFTGLPRQWQSLIE-------ESARRPKPLID 55
>ref|NP_001139326.1| serine/threonine-protein kinase PAK 6 [Mus musculus].
Length = 682
Score = 50.4 bits (119), Expect = 2e-06
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = +1
Query: 484 RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQT 597
RPEIS P +F+H +H FD G+F G+P QW +L T
Sbjct: 9 RPEISAPQNFQHRVHTSFDPKEGKFVGLPPQWQNILDT 46
>ref|NP_001028426.2| serine/threonine-protein kinase PAK 6 [Mus musculus].
Length = 682
Score = 50.4 bits (119), Expect = 2e-06
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = +1
Query: 484 RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQT 597
RPEIS P +F+H +H FD G+F G+P QW +L T
Sbjct: 9 RPEISAPQNFQHRVHTSFDPKEGKFVGLPPQWQNILDT 46
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,441,989
Number of extensions: 729859
Number of successful extensions: 2601
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 2585
Number of HSP's successfully gapped: 12
Length of query: 330
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 228
Effective length of database: 12,553,887
Effective search space: 2862286236
Effective search space used: 2862286236
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008988
(992 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002568.2| serine/threonine-protein kinase PAK 2 [Homo sap... 266 2e-71
Alignment gi|NP_001122092.1| serine/threonine-protein kinase PAK 1 isofor... 179 3e-45
Alignment gi|NP_002567.3| serine/threonine-protein kinase PAK 1 isoform 2... 179 3e-45
Alignment gi|NP_001121639.1| serine/threonine-protein kinase PAK 3 isofor... 176 4e-44
Alignment gi|NP_001121638.1| serine/threonine-protein kinase PAK 3 isofor... 176 4e-44
Alignment gi|NP_002569.1| serine/threonine-protein kinase PAK 3 isoform a... 176 4e-44
Alignment gi|NP_001121645.1| serine/threonine-protein kinase PAK 3 isofor... 166 4e-41
Alignment gi|NP_001121644.1| serine/threonine-protein kinase PAK 3 isofor... 163 2e-40
Alignment gi|NP_001121640.1| serine/threonine-protein kinase PAK 3 isofor... 157 1e-38
Alignment gi|NP_001122101.1| serine/threonine-protein kinase PAK 6 [Homo ... 50 2e-06
>ref|NP_002568.2| serine/threonine-protein kinase PAK 2 [Homo sapiens].
Length = 524
Score = 266 bits (680), Expect = 2e-71
Identities = 132/147 (89%), Positives = 133/147 (90%)
Frame = +1
Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPR+KIISIF
Sbjct: 1 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRHKIISIFSGT 60
Query: 454 XXXXXXXXXXRPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 633
RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP
Sbjct: 61 EKGSKKKEKERPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNP 120
Query: 634 QAVLDVLKFYDSNTVKQKYLSFTPPGK 714
QAVLDVLKFYDSNTVKQKYLSFTPP K
Sbjct: 121 QAVLDVLKFYDSNTVKQKYLSFTPPEK 147
>ref|NP_001122092.1| serine/threonine-protein kinase PAK 1 isoform 1 [Homo sapiens].
Length = 553
Score = 179 bits (454), Expect = 3e-45
Identities = 92/146 (63%), Positives = 106/146 (72%), Gaps = 3/146 (2%)
Frame = +1
Query: 274 MSDNG-ELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXX 450
MS+NG +++DKPPAPP+R +ST+ G KD + NH KPLP PEEKK +++
Sbjct: 1 MSNNGLDIQDKPPAPPMRNTSTMIGAGSKDAGTLNHGSKPLPPNPEEKKKKDRFYRSILP 60
Query: 451 XXXXXXXXXXXRPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKN 630
RPEIS PSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITK EQKKN
Sbjct: 61 GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKSEQKKN 120
Query: 631 PQAVLDVLKFYDSNTV--KQKYLSFT 702
PQAVLDVL+FY+S QKY+SFT
Sbjct: 121 PQAVLDVLEFYNSKKTSNSQKYMSFT 146
>ref|NP_002567.3| serine/threonine-protein kinase PAK 1 isoform 2 [Homo sapiens].
Length = 545
Score = 179 bits (454), Expect = 3e-45
Identities = 92/146 (63%), Positives = 106/146 (72%), Gaps = 3/146 (2%)
Frame = +1
Query: 274 MSDNG-ELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXX 450
MS+NG +++DKPPAPP+R +ST+ G KD + NH KPLP PEEKK +++
Sbjct: 1 MSNNGLDIQDKPPAPPMRNTSTMIGAGSKDAGTLNHGSKPLPPNPEEKKKKDRFYRSILP 60
Query: 451 XXXXXXXXXXXRPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKN 630
RPEIS PSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITK EQKKN
Sbjct: 61 GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKSEQKKN 120
Query: 631 PQAVLDVLKFYDSNTV--KQKYLSFT 702
PQAVLDVL+FY+S QKY+SFT
Sbjct: 121 PQAVLDVLEFYNSKKTSNSQKYMSFT 146
>ref|NP_001121639.1| serine/threonine-protein kinase PAK 3 isoform a [Homo sapiens].
Length = 544
Score = 176 bits (445), Expect = 4e-44
Identities = 95/152 (62%), Positives = 108/152 (71%), Gaps = 3/152 (1%)
Frame = +1
Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
MSD + E+KPPAPP+RM+S +D + NHS KPLP PEEK + ++ SIF
Sbjct: 1 MSDGLDNEEKPPAPPLRMNSN-----NRDSSALNHSSKPLPMAPEEKNKKARLRSIFPGG 55
Query: 454 XXXXXXXXXX-RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKN 630
RPEIS PSDFEHTIHVGFDAVTGEFTG+PEQWARLLQTSNITKLEQKKN
Sbjct: 56 GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTGIPEQWARLLQTSNITKLEQKKN 115
Query: 631 PQAVLDVLKFYDSNTV--KQKYLSFTPPGKTS 720
PQAVLDVLKFYDS QKY+SFT K++
Sbjct: 116 PQAVLDVLKFYDSKETVNNQKYMSFTSGDKSA 147
>ref|NP_001121638.1| serine/threonine-protein kinase PAK 3 isoform a [Homo sapiens].
Length = 544
Score = 176 bits (445), Expect = 4e-44
Identities = 95/152 (62%), Positives = 108/152 (71%), Gaps = 3/152 (1%)
Frame = +1
Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
MSD + E+KPPAPP+RM+S +D + NHS KPLP PEEK + ++ SIF
Sbjct: 1 MSDGLDNEEKPPAPPLRMNSN-----NRDSSALNHSSKPLPMAPEEKNKKARLRSIFPGG 55
Query: 454 XXXXXXXXXX-RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKN 630
RPEIS PSDFEHTIHVGFDAVTGEFTG+PEQWARLLQTSNITKLEQKKN
Sbjct: 56 GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTGIPEQWARLLQTSNITKLEQKKN 115
Query: 631 PQAVLDVLKFYDSNTV--KQKYLSFTPPGKTS 720
PQAVLDVLKFYDS QKY+SFT K++
Sbjct: 116 PQAVLDVLKFYDSKETVNNQKYMSFTSGDKSA 147
>ref|NP_002569.1| serine/threonine-protein kinase PAK 3 isoform a [Homo sapiens].
Length = 544
Score = 176 bits (445), Expect = 4e-44
Identities = 95/152 (62%), Positives = 108/152 (71%), Gaps = 3/152 (1%)
Frame = +1
Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
MSD + E+KPPAPP+RM+S +D + NHS KPLP PEEK + ++ SIF
Sbjct: 1 MSDGLDNEEKPPAPPLRMNSN-----NRDSSALNHSSKPLPMAPEEKNKKARLRSIFPGG 55
Query: 454 XXXXXXXXXX-RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKN 630
RPEIS PSDFEHTIHVGFDAVTGEFTG+PEQWARLLQTSNITKLEQKKN
Sbjct: 56 GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTGIPEQWARLLQTSNITKLEQKKN 115
Query: 631 PQAVLDVLKFYDSNTV--KQKYLSFTPPGKTS 720
PQAVLDVLKFYDS QKY+SFT K++
Sbjct: 116 PQAVLDVLKFYDSKETVNNQKYMSFTSGDKSA 147
>ref|NP_001121645.1| serine/threonine-protein kinase PAK 3 isoform d [Homo sapiens].
Length = 559
Score = 166 bits (419), Expect = 4e-41
Identities = 95/167 (56%), Positives = 108/167 (64%), Gaps = 18/167 (10%)
Frame = +1
Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
MSD + E+KPPAPP+RM+S +D + NHS KPLP PEEK + ++ SIF
Sbjct: 1 MSDGLDNEEKPPAPPLRMNSN-----NRDSSALNHSSKPLPMAPEEKNKKARLRSIFPGG 55
Query: 454 XXXXXXXXXX-RPEISPPSDFEHTIHVGFDAVTGEFT---------------GMPEQWAR 585
RPEIS PSDFEHTIHVGFDAVTGEFT G+PEQWAR
Sbjct: 56 GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTPDLYGSQMCPGKLPEGIPEQWAR 115
Query: 586 LLQTSNITKLEQKKNPQAVLDVLKFYDSNTV--KQKYLSFTPPGKTS 720
LLQTSNITKLEQKKNPQAVLDVLKFYDS QKY+SFT K++
Sbjct: 116 LLQTSNITKLEQKKNPQAVLDVLKFYDSKETVNNQKYMSFTSGDKSA 162
>ref|NP_001121644.1| serine/threonine-protein kinase PAK 3 isoform c [Homo sapiens].
Length = 565
Score = 163 bits (413), Expect = 2e-40
Identities = 95/173 (54%), Positives = 108/173 (62%), Gaps = 24/173 (13%)
Frame = +1
Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
MSD + E+KPPAPP+RM+S +D + NHS KPLP PEEK + ++ SIF
Sbjct: 1 MSDGLDNEEKPPAPPLRMNSN-----NRDSSALNHSSKPLPMAPEEKNKKARLRSIFPGG 55
Query: 454 XXXXXXXXXX-RPEISPPSDFEHTIHVGFDAVTGEFT---------------------GM 567
RPEIS PSDFEHTIHVGFDAVTGEFT G+
Sbjct: 56 GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTNSPFQTSRPVTVASSQSEGKMGI 115
Query: 568 PEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSNTV--KQKYLSFTPPGKTS 720
PEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDS QKY+SFT K++
Sbjct: 116 PEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSKETVNNQKYMSFTSGDKSA 168
>ref|NP_001121640.1| serine/threonine-protein kinase PAK 3 isoform b [Homo sapiens].
Length = 580
Score = 157 bits (398), Expect = 1e-38
Identities = 95/188 (50%), Positives = 108/188 (57%), Gaps = 39/188 (20%)
Frame = +1
Query: 274 MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFXXX 453
MSD + E+KPPAPP+RM+S +D + NHS KPLP PEEK + ++ SIF
Sbjct: 1 MSDGLDNEEKPPAPPLRMNSN-----NRDSSALNHSSKPLPMAPEEKNKKARLRSIFPGG 55
Query: 454 XXXXXXXXXX-RPEISPPSDFEHTIHVGFDAVTGEFT----------------------- 561
RPEIS PSDFEHTIHVGFDAVTGEFT
Sbjct: 56 GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTNSPFQTSRPVTVASSQSEGKMPD 115
Query: 562 -------------GMPEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSNTV--KQKYLS 696
G+PEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDS QKY+S
Sbjct: 116 LYGSQMCPGKLPEGIPEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSKETVNNQKYMS 175
Query: 697 FTPPGKTS 720
FT K++
Sbjct: 176 FTSGDKSA 183
>ref|NP_001122101.1| serine/threonine-protein kinase PAK 6 [Homo sapiens].
Length = 681
Score = 50.4 bits (119), Expect = 2e-06
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = +1
Query: 484 RPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQT 597
RPEIS P +F+H +H FD G+F G+P QW +L T
Sbjct: 9 RPEISAPQNFQHRVHTSFDPKEGKFVGLPPQWQNILDT 46
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,721,856
Number of extensions: 864525
Number of successful extensions: 2995
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 2977
Number of HSP's successfully gapped: 20
Length of query: 330
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,901,872
Effective search space: 3382724944
Effective search space used: 3382724944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008988
(992 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 777 0.0
Sscrofa_Chr09 88 1e-14
>Sscrofa_Chr13
|| Length = 218635234
Score = 777 bits (392), Expect = 0.0
Identities = 417/424 (98%), Gaps = 1/424 (0%)
Strand = Plus / Minus
Query: 562 ggcatgccagaacagtgggctcgattattacagacctccaatatcaccaaactagagcaa 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142945412 ggcatgccagaacagtgggctcgattattacagacctccaatatcaccaaactagagcaa 142945353
Query: 622 aagaagaatcctcaggctgtgctggatgtcttaaagttctacgactccaacacagtgaag 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142945352 aagaagaatcctcaggctgtgctggatgtcttaaagttctacgactccaacacagtgaag 142945293
Query: 682 cagaaatacctgagctttactcctcctggtaagacatcagacctggtaaaaggctggctt 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142945292 cagaaatacctgagctttactcctcctggtaagacatcagacctggtaaaaggctggctt 142945233
Query: 742 aaatgggatcacagagttggggagcacttgtagataaaaagattgcttctggaaaaatca 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142945232 aaatgggatcacagagttggggagcacttgtagataaaaagattgcttctggaaaaatca 142945173
Query: 802 aaagctaagctgcggtggttgcctcagctttttcccctgcgtagatctgtcttttgtaaa 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142945172 aaagctaagctgcggtggttgcctcagctttttcccctgcgtagatctgtcttttgtaaa 142945113
Query: 862 ctgatgtgggcagctcttaggcataatttggaatctgggggattatatcaatttcctggt 921
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 142945112 ctgatgtgggcagctcttaggcataatttggaatct-ggggattatatcaatttcctggt 142945054
Query: 922 tttgccaaaagtgggtgttttgggcttttggtgcctcttcactgctttttcatgagtccc 981
||||||||||||||||||||||| |||||| || ||||||||||||||| |||||| ||
Sbjct: 142945053 tttgccaaaagtgggtgttttggtcttttgttgtctcttcactgcttttcaatgagttcc 142944994
Query: 982 agca 985
||||
Sbjct: 142944993 agca 142944990
Score = 375 bits (189), Expect = e-101
Identities = 203/210 (96%)
Strand = Plus / Minus
Query: 252 ggccgtatcataattctgaatcatgtctgataacggagaactggaagacaagcctccagc 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142963934 ggccgtatcataattctgaatcatgtctgataacggagaactggaagacaagcctccagc 142963875
Query: 312 accccctgtgcgaatgagcagtaccatttttagtactggaggcaaagaccctttgtcagc 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142963874 accccctgtgcgaatgagcagtaccatttttagtactggaggcaaagaccctttgtcagc 142963815
Query: 372 caatcacagtttgaaacctttgccctctgttccagaggnnnnnnngcccaggaataaaat 431
|||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 142963814 caatcacagtttgaaacctttgccctctgttccagaggaaaaaaagcccaggaataaaat 142963755
Query: 432 catctctatattctcaagcacagagaaagg 461
||||||||||||||||||||||||||||||
Sbjct: 142963754 catctctatattctcaagcacagagaaagg 142963725
Score = 375 bits (189), Expect = e-101
Identities = 203/210 (96%)
Strand = Plus / Minus
Query: 252 ggccgtatcataattctgaatcatgtctgataacggagaactggaagacaagcctccagc 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142982617 ggccgtatcataattctgaatcatgtctgataacggagaactggaagacaagcctccagc 142982558
Query: 312 accccctgtgcgaatgagcagtaccatttttagtactggaggcaaagaccctttgtcagc 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142982557 accccctgtgcgaatgagcagtaccatttttagtactggaggcaaagaccctttgtcagc 142982498
Query: 372 caatcacagtttgaaacctttgccctctgttccagaggnnnnnnngcccaggaataaaat 431
|||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 142982497 caatcacagtttgaaacctttgccctctgttccagaggaaaaaaagcccaggaataaaat 142982438
Query: 432 catctctatattctcaagcacagagaaagg 461
||||||||||||||||||||||||||||||
Sbjct: 142982437 catctctatattctcaagcacagagaaagg 142982408
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 459 aggaagtaagaagaaagagaaggaaaggccagaaatttctcctccgtctgattttgagca 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142945834 aggaagtaagaagaaagagaaggaaaggccagaaatttctcctccgtctgattttgagca 142945775
Query: 519 caccatccatgttggttttgatgctgtcactggagaattcactg 562
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142945774 caccatccatgttggttttgatgctgtcactggagaattcactg 142945731
Score = 178 bits (90), Expect = 4e-42
Identities = 90/90 (100%)
Strand = Plus / Minus
Query: 164 cgtcgctctcttgctcggggcggctcctgatcccgccaggagctcggccggaggctcctc 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143031174 cgtcgctctcttgctcggggcggctcctgatcccgccaggagctcggccggaggctcctc 143031115
Query: 224 gctggggcggggacctttcctcgcctgggg 253
||||||||||||||||||||||||||||||
Sbjct: 143031114 gctggggcggggacctttcctcgcctgggg 143031085
Score = 103 bits (52), Expect = 2e-19
Identities = 52/52 (100%)
Strand = Plus / Minus
Query: 2 ttcccctctggcctgggccgtcgccattgccgaaggctccctgccctcccct 53
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143031336 ttcccctctggcctgggccgtcgccattgccgaaggctccctgccctcccct 143031285
Score = 58.0 bits (29), Expect = 1e-05
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 88 tagcagtagaagccgcggcgctccagcgc 116
|||||||||||||||||||||||||||||
Sbjct: 143031250 tagcagtagaagccgcggcgctccagcgc 143031222
>Sscrofa_Chr09
|| Length = 153670197
Score = 87.7 bits (44), Expect = 1e-14
Identities = 71/80 (88%)
Strand = Plus / Minus
Query: 469 aagaaagagaaggaaaggccagaaatttctcctccgtctgattttgagcacaccatccat 528
||||| || |||||| ||||||| ||||||| ||| || |||||||||||||| || |||
Sbjct: 13028528 aagaaggaaaaggaacggccagagatttctcttccttcagattttgagcacacaattcat 13028469
Query: 529 gttggttttgatgctgtcac 548
||||||||||||||||||||
Sbjct: 13028468 gttggttttgatgctgtcac 13028449
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,760,795
Number of extensions: 326
Number of successful extensions: 326
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 8
Length of query: 992
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 971
Effective length of database: 2,808,413,156
Effective search space: 2726969174476
Effective search space used: 2726969174476
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)