Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009410
(951 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001138324.1| homogentisate 1,2-dioxygenase [Bos taurus]. 521 e-148
>ref|NP_001138324.1| homogentisate 1,2-dioxygenase [Bos taurus].
Length = 445
Score = 521 bits (1342), Expect = e-148
Identities = 243/260 (93%), Positives = 249/260 (95%)
Frame = +1
Query: 172 MAELKYISGFGNECASEDPRCPGALPEGQNNPQVCPYNLYAEQLSGSAFTCPRSTNKRSW 351
M ELKYISGFGNECASEDPRCPGALPEGQNNPQVCPYNLYAEQLSGSAFTCPRSTNKRSW
Sbjct: 1 MTELKYISGFGNECASEDPRCPGALPEGQNNPQVCPYNLYAEQLSGSAFTCPRSTNKRSW 60
Query: 352 LYRILPSVSHKPFESVDQGHVTHNWDEVGPDPNQLRWKPFEIPKASQKKVDFVSGLHTLC 531
LYRILPSVSHKPFE +DQGH+THNWDEV PDPNQLRWKPFEIPKASQKKVDFV+GLHTLC
Sbjct: 61 LYRILPSVSHKPFEFIDQGHITHNWDEVDPDPNQLRWKPFEIPKASQKKVDFVNGLHTLC 120
Query: 532 GAGDIRSNNGLAVHIFLCNTSMDRRCFYNSDGDFLIVPQKGKLLIYTEFGKMLVQPKEIC 711
GAGDIRSNNGLA+HIFLCNTSM RCFYNSDGD LIVPQKGKLLIYTEFGKMLVQP EIC
Sbjct: 121 GAGDIRSNNGLAIHIFLCNTSMGNRCFYNSDGDLLIVPQKGKLLIYTEFGKMLVQPNEIC 180
Query: 712 VIQRGMRFSIDVFEETRGYILEVYGIHFELPDLGPIGANGFANPRDFLIPVAWYEDLQVP 891
VIQRGMRFSIDVFEETRGYILEVYG+HFELPDLGPIGANG ANPRDFLIPVAWYED QVP
Sbjct: 181 VIQRGMRFSIDVFEETRGYILEVYGVHFELPDLGPIGANGLANPRDFLIPVAWYEDRQVP 240
Query: 892 GGFTVINKLTGKLFAAKQDV 951
GG+TVINK GKLFAAKQDV
Sbjct: 241 GGYTVINKYQGKLFAAKQDV 260
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,604,887
Number of extensions: 1099445
Number of successful extensions: 2936
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2935
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 215
Effective length of database: 14,306,398
Effective search space: 3075875570
Effective search space used: 3075875570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009410
(951 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535754.2| PREDICTED: similar to Homogentisate 1,2-dioxyge... 515 e-146
>ref|XP_535754.2| PREDICTED: similar to Homogentisate 1,2-dioxygenase
(Homogentisicase) (Homogentisate oxygenase)
(Homogentisic acid oxidase) [Canis familiaris].
Length = 442
Score = 515 bits (1327), Expect = e-146
Identities = 240/257 (93%), Positives = 247/257 (96%)
Frame = +1
Query: 181 LKYISGFGNECASEDPRCPGALPEGQNNPQVCPYNLYAEQLSGSAFTCPRSTNKRSWLYR 360
++YI GFGNECASEDPRCPGALPEGQNNPQVCPYNLYAEQLSGSAFTCPRSTNKRSWLYR
Sbjct: 1 MQYIPGFGNECASEDPRCPGALPEGQNNPQVCPYNLYAEQLSGSAFTCPRSTNKRSWLYR 60
Query: 361 ILPSVSHKPFESVDQGHVTHNWDEVGPDPNQLRWKPFEIPKASQKKVDFVSGLHTLCGAG 540
ILPSV HKPFES+DQGHVTHNWDEV PDPNQLRWKPFEIPKASQKKVDFVSGLHTLCGAG
Sbjct: 61 ILPSVCHKPFESIDQGHVTHNWDEVDPDPNQLRWKPFEIPKASQKKVDFVSGLHTLCGAG 120
Query: 541 DIRSNNGLAVHIFLCNTSMDRRCFYNSDGDFLIVPQKGKLLIYTEFGKMLVQPKEICVIQ 720
DIRSNNGLA+HIFLCNTSM RCFYNSDGDFLIVPQKGKLLIYTEFGKMLVQP EICVIQ
Sbjct: 121 DIRSNNGLAIHIFLCNTSMGNRCFYNSDGDFLIVPQKGKLLIYTEFGKMLVQPNEICVIQ 180
Query: 721 RGMRFSIDVFEETRGYILEVYGIHFELPDLGPIGANGFANPRDFLIPVAWYEDLQVPGGF 900
RGMRFSIDVFEETRGYILEVYG+HFELPDLGPIGANG ANPRDFLIPVAWYED QVPGG+
Sbjct: 181 RGMRFSIDVFEETRGYILEVYGVHFELPDLGPIGANGLANPRDFLIPVAWYEDRQVPGGY 240
Query: 901 TVINKLTGKLFAAKQDV 951
TVINK GKLFAAKQ+V
Sbjct: 241 TVINKYQGKLFAAKQNV 257
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,153,928
Number of extensions: 1119830
Number of successful extensions: 2955
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2955
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 214
Effective length of database: 15,440,896
Effective search space: 3304351744
Effective search space used: 3304351744
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009410
(951 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361929.1| PREDICTED: homogentisate 1,2-dioxygenase [Su... 541 e-154
>ref|XP_003361929.1| PREDICTED: homogentisate 1,2-dioxygenase [Sus scrofa].
Length = 445
Score = 541 bits (1393), Expect = e-154
Identities = 256/260 (98%), Positives = 257/260 (98%)
Frame = +1
Query: 172 MAELKYISGFGNECASEDPRCPGALPEGQNNPQVCPYNLYAEQLSGSAFTCPRSTNKRSW 351
MAELKYISGFGNECASEDPRCPGALPEGQNNPQVCPYNLYAEQLSGSAFTCPRSTNKRSW
Sbjct: 1 MAELKYISGFGNECASEDPRCPGALPEGQNNPQVCPYNLYAEQLSGSAFTCPRSTNKRSW 60
Query: 352 LYRILPSVSHKPFESVDQGHVTHNWDEVGPDPNQLRWKPFEIPKASQKKVDFVSGLHTLC 531
LYRILPSVSHKPFESV+QGHVTHNWDEVGPDPNQLRWKPFEIPKASQKKVDFVSGLHTLC
Sbjct: 61 LYRILPSVSHKPFESVNQGHVTHNWDEVGPDPNQLRWKPFEIPKASQKKVDFVSGLHTLC 120
Query: 532 GAGDIRSNNGLAVHIFLCNTSMDRRCFYNSDGDFLIVPQKGKLLIYTEFGKMLVQPKEIC 711
GAGDIRSNNGLAVHIFLCNTSMDRRCFYNSDGDFLIVPQKGKLLIYTEFGKMLVQPKEIC
Sbjct: 121 GAGDIRSNNGLAVHIFLCNTSMDRRCFYNSDGDFLIVPQKGKLLIYTEFGKMLVQPKEIC 180
Query: 712 VIQRGMRFSIDVFEETRGYILEVYGIHFELPDLGPIGANGFANPRDFLIPVAWYEDLQVP 891
VIQRGMRFSIDVFEETRGYILEVYGIHFELPDLGPIGANG ANPRDFLIPVAWYEDLQVP
Sbjct: 181 VIQRGMRFSIDVFEETRGYILEVYGIHFELPDLGPIGANGLANPRDFLIPVAWYEDLQVP 240
Query: 892 GGFTVINKLTGKLFAAKQDV 951
GGFTVINK GKLFAAKQDV
Sbjct: 241 GGFTVINKYQGKLFAAKQDV 260
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,451,326
Number of extensions: 701174
Number of successful extensions: 1876
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1876
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 218
Effective length of database: 8,879,129
Effective search space: 1935650122
Effective search space used: 1935650122
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009410
(951 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038575.2| homogentisate 1,2-dioxygenase [Mus musculus]. 516 e-147
>ref|NP_038575.2| homogentisate 1,2-dioxygenase [Mus musculus].
Length = 445
Score = 516 bits (1330), Expect = e-147
Identities = 238/260 (91%), Positives = 252/260 (96%)
Frame = +1
Query: 172 MAELKYISGFGNECASEDPRCPGALPEGQNNPQVCPYNLYAEQLSGSAFTCPRSTNKRSW 351
MAELKYISGFGNECASEDPRCPG+LP+GQNNPQVCPYNLYAEQLSGSAFTCPR+TNKRSW
Sbjct: 1 MAELKYISGFGNECASEDPRCPGSLPKGQNNPQVCPYNLYAEQLSGSAFTCPRNTNKRSW 60
Query: 352 LYRILPSVSHKPFESVDQGHVTHNWDEVGPDPNQLRWKPFEIPKASQKKVDFVSGLHTLC 531
LYRILPSVSHKPFES+DQGHVTHNWDEVGPDPNQLRWKPFEIPKAS+KKVDFVSGL+TLC
Sbjct: 61 LYRILPSVSHKPFESIDQGHVTHNWDEVGPDPNQLRWKPFEIPKASEKKVDFVSGLYTLC 120
Query: 532 GAGDIRSNNGLAVHIFLCNTSMDRRCFYNSDGDFLIVPQKGKLLIYTEFGKMLVQPKEIC 711
GAGDI+SNNGLAVHIFLCN+SM+ RCFYNSDGDFLIVPQKGKLLIYTEFGKM +QP EIC
Sbjct: 121 GAGDIKSNNGLAVHIFLCNSSMENRCFYNSDGDFLIVPQKGKLLIYTEFGKMSLQPNEIC 180
Query: 712 VIQRGMRFSIDVFEETRGYILEVYGIHFELPDLGPIGANGFANPRDFLIPVAWYEDLQVP 891
VIQRGMRFS+DVFEETRGYILEVYG+HFELPDLGPIGANG ANPRDFLIPVAWYED +VP
Sbjct: 181 VIQRGMRFSVDVFEETRGYILEVYGVHFELPDLGPIGANGLANPRDFLIPVAWYEDRRVP 240
Query: 892 GGFTVINKLTGKLFAAKQDV 951
GG+TVINK GKLFA KQDV
Sbjct: 241 GGYTVINKFQGKLFACKQDV 260
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,625,749
Number of extensions: 955811
Number of successful extensions: 2467
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2467
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 216
Effective length of database: 12,583,923
Effective search space: 2718127368
Effective search space used: 2718127368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009410
(951 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000178.2| homogentisate 1,2-dioxygenase [Homo sapiens]. 520 e-148
>ref|NP_000178.2| homogentisate 1,2-dioxygenase [Homo sapiens].
Length = 445
Score = 520 bits (1339), Expect = e-148
Identities = 241/260 (92%), Positives = 251/260 (96%)
Frame = +1
Query: 172 MAELKYISGFGNECASEDPRCPGALPEGQNNPQVCPYNLYAEQLSGSAFTCPRSTNKRSW 351
MAELKYISGFGNEC+SEDPRCPG+LPEGQNNPQVCPYNLYAEQLSGSAFTCPRSTNKRSW
Sbjct: 1 MAELKYISGFGNECSSEDPRCPGSLPEGQNNPQVCPYNLYAEQLSGSAFTCPRSTNKRSW 60
Query: 352 LYRILPSVSHKPFESVDQGHVTHNWDEVGPDPNQLRWKPFEIPKASQKKVDFVSGLHTLC 531
LYRILPSVSHKPFES+D+G VTHNWDEV PDPNQLRWKPFEIPKASQKKVDFVSGLHTLC
Sbjct: 61 LYRILPSVSHKPFESIDEGQVTHNWDEVDPDPNQLRWKPFEIPKASQKKVDFVSGLHTLC 120
Query: 532 GAGDIRSNNGLAVHIFLCNTSMDRRCFYNSDGDFLIVPQKGKLLIYTEFGKMLVQPKEIC 711
GAGDI+SNNGLA+HIFLCNTSM+ RCFYNSDGDFLIVPQKG LLIYTEFGKMLVQP EIC
Sbjct: 121 GAGDIKSNNGLAIHIFLCNTSMENRCFYNSDGDFLIVPQKGNLLIYTEFGKMLVQPNEIC 180
Query: 712 VIQRGMRFSIDVFEETRGYILEVYGIHFELPDLGPIGANGFANPRDFLIPVAWYEDLQVP 891
VIQRGMRFSIDVFEETRGYILEVYG+HFELPDLGPIGANG ANPRDFLIP+AWYED QVP
Sbjct: 181 VIQRGMRFSIDVFEETRGYILEVYGVHFELPDLGPIGANGLANPRDFLIPIAWYEDRQVP 240
Query: 892 GGFTVINKLTGKLFAAKQDV 951
GG+TVINK GKLFAAKQDV
Sbjct: 241 GGYTVINKYQGKLFAAKQDV 260
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,636,565
Number of extensions: 1124709
Number of successful extensions: 2793
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2786
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 215
Effective length of database: 14,934,836
Effective search space: 3210989740
Effective search space used: 3210989740
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009410
(951 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|JH118974.1| Sus scrofa unplaced genomic scaffold ChrUScaf3854 299 1e-78
>gb|JH118974.1| Sus scrofa unplaced genomic scaffold ChrUScaf3854
Length = 306216
Score = 299 bits (151), Expect = 1e-78
Identities = 184/197 (93%), Gaps = 11/197 (5%)
Strand = Plus / Plus
Query: 1 catttaggaaatgctcaagtctagtttgaaggacctgctgaccagtgagtgcagagaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198356 catttaggaaatgctcaagtctagtttgaaggacctgctgaccagtgagtgcagagaagc 198415
Query: 61 agtggagtaacaacatctagagggtgatttgaggagaaacagaagcattttggcttcata 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 198416 agtggagtaacaacatctagagggtgatttgaggagaaacagaagcattttggctttata 198475
Query: 121 ccctctctgggcctggtt-----------tccagaaatcatcatacctgcagcagaagga 169
||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 198476 ccctctctggggctggtttccagaaatcntccagaaatcatcatacctgcagcagaagga 198535
Query: 170 aaatggctgaattgaag 186
|||||||||||||||||
Sbjct: 198536 aaatggctgaattgaag 198552
Score = 216 bits (109), Expect = 2e-53
Identities = 124/129 (96%)
Strand = Plus / Plus
Query: 818 taggagccaatggctttgccaatcctcgtgatttcttgatacctgttgcctggtatgaag 877
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234109 taggagccaatggcttggccaatcctcgtgatttcttgatacctgttgcctggtatgaag 234168
Query: 878 atctccaagtgccaggtggttttactgtgattaataaattaacgggcaagttgtttgctg 937
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 234169 atctccaagtgccaggtggttttactgtgattaataaataccagggcaagttgtttgctg 234228
Query: 938 ccaaacagg 946
|||||||||
Sbjct: 234229 ccaaacagg 234237
Score = 206 bits (104), Expect = 2e-50
Identities = 107/108 (99%)
Strand = Plus / Plus
Query: 346 agctggctttataggattctaccttcagtttctcacaagccttttgaatccgtcgaccaa 405
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 209577 agctggctttataggattctaccttcagtttctcacaagccttttgaatccgtcaaccaa 209636
Query: 406 ggccatgtcactcacaactgggatgaagtgggtcctgatcctaaccag 453
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209637 ggccatgtcactcacaactgggatgaagtgggtcctgatcctaaccag 209684
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 718 cagagaggaatgcggttcagcatagatgtctttgaggagaccaggggctacatcctggag 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231768 cagagaggaatgcggttcagcatagatgtctttgaggagaccaggggctacatcctggag 231827
Query: 778 gtctatggtatccactttgagttgcctgacttgggaccaatagg 821
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231828 gtctatggtatccactttgagttgcctgacttgggaccaatagg 231871
Score = 182 bits (92), Expect = 2e-43
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 514 ggcctgcacaccttgtgtggagctggagacatcaggtctaacaatgggcttgctgtccac 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228275 ggcctgcacaccttgtgtggagctggagacatcaggtctaacaatgggcttgctgtccac 228334
Query: 574 attttcctctgcaacacctccatggaccgaag 605
||||||||||||||||||||||||||||||||
Sbjct: 228335 attttcctctgcaacacctccatggaccgaag 228366
Score = 180 bits (91), Expect = 9e-43
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 257 agaataatcctcaagtatgcccctacaatctgtatgctgagcagctctcaggatcggctt 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205539 agaataatcctcaagtatgcccctacaatctgtatgctgagcagctctcaggatcggctt 205598
Query: 317 tcacttgtccaaggagcaccaacaagagaag 347
|||||||||||||||||||||||||||||||
Sbjct: 205599 tcacttgtccaaggagcaccaacaagagaag 205629
Score = 161 bits (81), Expect = 9e-37
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 640 gttccccagaaagggaaacttctcatttacaccgaatttggcaagatgctcgttcagccc 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231152 gttccccagaaagggaaacttctcatttacaccgaatttggcaagatgctcgttcagccc 231211
Query: 700 aaggagatctgcgtcattcag 720
|||||||||||||||||||||
Sbjct: 231212 aaggagatctgcgtcattcag 231232
Score = 147 bits (74), Expect = 1e-32
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 185 agtacatttctggatttgggaatgagtgtgcctcagaggaccctcgctgcccaggtgccc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204345 agtacatttctggatttgggaatgagtgtgcctcagaggaccctcgctgcccaggtgccc 204404
Query: 245 tgccagaaggacag 258
||||||||||||||
Sbjct: 204405 tgccagaaggacag 204418
Score = 129 bits (65), Expect = 3e-27
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 450 ccagctgcgatggaaaccatttgagattccaaaagcctctcagaagaaagtggacttcgt 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226196 ccagctgcgatggaaaccatttgagattccaaaagcctctcagaagaaagtggacttcgt 226255
Query: 510 gagtg 514
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Sbjct: 226256 gagtg 226260
Score = 73.8 bits (37), Expect = 2e-10
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 604 agatgcttttacaattcagatggggacttcttgattg 640
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Sbjct: 230011 agatgcttttacaattcagatggggacttcttgattg 230047
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,380,793
Number of extensions: 167
Number of successful extensions: 167
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 11
Length of query: 951
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 930
Effective length of database: 2,808,413,156
Effective search space: 2611824235080
Effective search space used: 2611824235080
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)