Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012197
(1146 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001183983.1| triosephosphate isomerase [Canis lupus famil... 476 e-134
>ref|NP_001183983.1| triosephosphate isomerase [Canis lupus familiaris].
Length = 249
Score = 476 bits (1226), Expect = e-134
Identities = 235/246 (95%), Positives = 241/246 (97%)
Frame = +2
Query: 41 MAPARKFFVGGNWKMNGRKNNLGELINTLNAAKLPADTEVVCAPPTAYIDFARQKLDPKI 220
MAP+RKFFVGGNWKMNGRK NLGELI TLNAAK+PADTEVVCAPPTAYIDFARQKLD KI
Sbjct: 1 MAPSRKFFVGGNWKMNGRKKNLGELITTLNAAKVPADTEVVCAPPTAYIDFARQKLDAKI 60
Query: 221 AVAAQNCYKVANGAFTGEISPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVAHALAE 400
AVAAQNCYKV NGAFTGEISPGMIKD GATWVVLGHSERRHVFGESDELIGQKVAHALAE
Sbjct: 61 AVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAE 120
Query: 401 GLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWNKVVLAYEPVWAIGTGKTATPQ 580
GLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDW+KVVLAYEPVWAIGTGKTATPQ
Sbjct: 121 GLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQ 180
Query: 581 QAQEVHEKLRGWLKTHVSEAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE 760
QAQEVHEKLRGWLK++VS+AVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE
Sbjct: 181 QAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE 240
Query: 761 FVDIIN 778
FVDIIN
Sbjct: 241 FVDIIN 246
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 58,454,046
Number of extensions: 1976900
Number of successful extensions: 7931
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7891
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 277
Effective length of database: 15,374,224
Effective search space: 4258660048
Effective search space used: 4258660048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012197
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012197
(1146 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001013607.1| triosephosphate isomerase [Bos taurus]. 486 e-137
>ref|NP_001013607.1| triosephosphate isomerase [Bos taurus].
Length = 249
Score = 486 bits (1250), Expect = e-137
Identities = 239/246 (97%), Positives = 245/246 (99%)
Frame = +2
Query: 41 MAPARKFFVGGNWKMNGRKNNLGELINTLNAAKLPADTEVVCAPPTAYIDFARQKLDPKI 220
MAP+RKFFVGGNWKMNGRKNNLGELINTLNAAK+PADTEVVCAPPTAYIDFARQKLDPKI
Sbjct: 1 MAPSRKFFVGGNWKMNGRKNNLGELINTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKI 60
Query: 221 AVAAQNCYKVANGAFTGEISPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVAHALAE 400
AVAAQNCYKVANGAFTGEISPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVAHALAE
Sbjct: 61 AVAAQNCYKVANGAFTGEISPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVAHALAE 120
Query: 401 GLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWNKVVLAYEPVWAIGTGKTATPQ 580
GLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDW+KVVLAYEPVWAIGTGKTATPQ
Sbjct: 121 GLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQ 180
Query: 581 QAQEVHEKLRGWLKTHVSEAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE 760
QAQEVHEKLRGWLK++VS+AVAQS RIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE
Sbjct: 181 QAQEVHEKLRGWLKSNVSDAVAQSARIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE 240
Query: 761 FVDIIN 778
FVDIIN
Sbjct: 241 FVDIIN 246
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,929,218
Number of extensions: 1916468
Number of successful extensions: 7737
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7685
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 278
Effective length of database: 14,240,222
Effective search space: 3958781716
Effective search space used: 3958781716
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012197
(1146 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001032228.1| triosephosphate isomerase [Sus scrofa]. 487 e-138
>ref|NP_001032228.1| triosephosphate isomerase [Sus scrofa].
Length = 248
Score = 487 bits (1254), Expect = e-138
Identities = 241/246 (97%), Positives = 241/246 (97%)
Frame = +2
Query: 41 MAPARKFFVGGNWKMNGRKNNLGELINTLNAAKLPADTEVVCAPPTAYIDFARQKLDPKI 220
MAPARKFFVGGNWKMNGRKNNLGELINTLNAAKLPADTEVVCAPPTAYIDFARQKLDPKI
Sbjct: 1 MAPARKFFVGGNWKMNGRKNNLGELINTLNAAKLPADTEVVCAPPTAYIDFARQKLDPKI 60
Query: 221 AVAAQNCYKVANGAFTGEISPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVAHALAE 400
AVAAQNCYKVANGAFTGEI PGMIKDLGATWVVLGHSERRHVFGESDELIGQKVAHALAE
Sbjct: 61 AVAAQNCYKVANGAFTGEIGPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVAHALAE 120
Query: 401 GLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWNKVVLAYEPVWAIGTGKTATPQ 580
GLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWNKVVLAYEPVWAIGTGKTATPQ
Sbjct: 121 GLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWNKVVLAYEPVWAIGTGKTATPQ 180
Query: 581 QAQEVHEKLRGWLKTHVSEAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE 760
QAQEVHEKLRGWLKTHV EAVA STRIIYGGSVTGATCKELASQPDVDGF V GASLKPE
Sbjct: 181 QAQEVHEKLRGWLKTHVPEAVAHSTRIIYGGSVTGATCKELASQPDVDGFRVSGASLKPE 240
Query: 761 FVDIIN 778
FVDIIN
Sbjct: 241 FVDIIN 246
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,207,475
Number of extensions: 1242483
Number of successful extensions: 4930
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4908
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 281
Effective length of database: 8,829,335
Effective search space: 2481043135
Effective search space used: 2481043135
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012197
(1146 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033441.2| triosephosphate isomerase [Mus musculus]. 472 e-133
>ref|NP_033441.2| triosephosphate isomerase [Mus musculus].
Length = 299
Score = 472 bits (1215), Expect = e-133
Identities = 236/263 (89%), Positives = 244/263 (92%), Gaps = 4/263 (1%)
Frame = +2
Query: 2 WAAP----DLQCVGSSAMAPARKFFVGGNWKMNGRKNNLGELINTLNAAKLPADTEVVCA 169
W P DLQ + MAP RKFFVGGNWKMNGRK LGELI TLNAA +PA TEVVCA
Sbjct: 34 WREPCVCTDLQRLEPGTMAPTRKFFVGGNWKMNGRKKCLGELICTLNAANVPAGTEVVCA 93
Query: 170 PPTAYIDFARQKLDPKIAVAAQNCYKVANGAFTGEISPGMIKDLGATWVVLGHSERRHVF 349
PPTAYIDFARQKLDPKIAVAAQNCYKV NGAFTGEISPGMIKDLGATWVVLGHSERRHVF
Sbjct: 94 PPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDLGATWVVLGHSERRHVF 153
Query: 350 GESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWNKVVL 529
GESDELIGQKV+HALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDW+KVVL
Sbjct: 154 GESDELIGQKVSHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVL 213
Query: 530 AYEPVWAIGTGKTATPQQAQEVHEKLRGWLKTHVSEAVAQSTRIIYGGSVTGATCKELAS 709
AYEPVWAIGTGKTATPQQAQEVHEKLRGWLK++V++ VAQSTRIIYGGSVTGATCKELAS
Sbjct: 214 AYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVNDGVAQSTRIIYGGSVTGATCKELAS 273
Query: 710 QPDVDGFLVGGASLKPEFVDIIN 778
QPDVDGFLVGGASLKPEFVDIIN
Sbjct: 274 QPDVDGFLVGGASLKPEFVDIIN 296
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,012,868
Number of extensions: 1587450
Number of successful extensions: 6150
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6123
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 279
Effective length of database: 12,523,851
Effective search space: 3494154429
Effective search space used: 3494154429
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012197
(1146 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001152759.1| triosephosphate isomerase isoform 2 [Homo sa... 490 e-138
Alignment gi|NP_000356.1| triosephosphate isomerase isoform 1 [Homo sapie... 478 e-135
>ref|NP_001152759.1| triosephosphate isomerase isoform 2 [Homo sapiens].
Length = 286
Score = 490 bits (1261), Expect = e-138
Identities = 243/258 (94%), Positives = 251/258 (97%)
Frame = +2
Query: 5 AAPDLQCVGSSAMAPARKFFVGGNWKMNGRKNNLGELINTLNAAKLPADTEVVCAPPTAY 184
A DLQ +GSSAMAP+RKFFVGGNWKMNGRK +LGELI TLNAAK+PADTEVVCAPPTAY
Sbjct: 26 ADTDLQRLGSSAMAPSRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAY 85
Query: 185 IDFARQKLDPKIAVAAQNCYKVANGAFTGEISPGMIKDLGATWVVLGHSERRHVFGESDE 364
IDFARQKLDPKIAVAAQNCYKV NGAFTGEISPGMIKD GATWVVLGHSERRHVFGESDE
Sbjct: 86 IDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDE 145
Query: 365 LIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWNKVVLAYEPV 544
LIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDW+KVVLAYEPV
Sbjct: 146 LIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPV 205
Query: 545 WAIGTGKTATPQQAQEVHEKLRGWLKTHVSEAVAQSTRIIYGGSVTGATCKELASQPDVD 724
WAIGTGKTATPQQAQEVHEKLRGWLK++VS+AVAQSTRIIYGGSVTGATCKELASQPDVD
Sbjct: 206 WAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVD 265
Query: 725 GFLVGGASLKPEFVDIIN 778
GFLVGGASLKPEFVDIIN
Sbjct: 266 GFLVGGASLKPEFVDIIN 283
>ref|NP_000356.1| triosephosphate isomerase isoform 1 [Homo sapiens].
Length = 249
Score = 478 bits (1229), Expect = e-135
Identities = 235/246 (95%), Positives = 242/246 (98%)
Frame = +2
Query: 41 MAPARKFFVGGNWKMNGRKNNLGELINTLNAAKLPADTEVVCAPPTAYIDFARQKLDPKI 220
MAP+RKFFVGGNWKMNGRK +LGELI TLNAAK+PADTEVVCAPPTAYIDFARQKLDPKI
Sbjct: 1 MAPSRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKI 60
Query: 221 AVAAQNCYKVANGAFTGEISPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVAHALAE 400
AVAAQNCYKV NGAFTGEISPGMIKD GATWVVLGHSERRHVFGESDELIGQKVAHALAE
Sbjct: 61 AVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAE 120
Query: 401 GLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWNKVVLAYEPVWAIGTGKTATPQ 580
GLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDW+KVVLAYEPVWAIGTGKTATPQ
Sbjct: 121 GLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQ 180
Query: 581 QAQEVHEKLRGWLKTHVSEAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE 760
QAQEVHEKLRGWLK++VS+AVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE
Sbjct: 181 QAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE 240
Query: 761 FVDIIN 778
FVDIIN
Sbjct: 241 FVDIIN 246
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 57,175,223
Number of extensions: 1932310
Number of successful extensions: 7620
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7574
Number of HSP's successfully gapped: 2
Length of query: 382
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 278
Effective length of database: 14,868,908
Effective search space: 4133556424
Effective search space used: 4133556424
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012197
(1146 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 858 0.0
>Sscrofa_Chr05
|| Length = 111506441
Score = 858 bits (433), Expect = 0.0
Identities = 469/477 (98%), Gaps = 3/477 (0%)
Strand = Plus / Minus
Query: 671 ggctctgtgactggggcaacctgcaaagagctggcgagccagcctgatgtggacgggttc 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66275467 ggctctgtgactggggcaacctgcaaagagctggcgagccagcctgatgtggacgggttc 66275408
Query: 731 cttgtgggtggcgcttccctcaagcctgaatttgtggacatcatcaatgccaaataataa 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66275407 cttgtgggtggcgcttccctcaagcctgaatttgtggacatcatcaatgccaaataataa 66275348
Query: 791 gcccatccatcgcccctacctccccttccctccaagccagggactagggagctcagaagc 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66275347 gcccatccatcgcccctacctccccttccctccaagccagggactagggagctcagaagc 66275288
Query: 851 ccaataactgtgctgccccaccccccacatgcttctgatggtgtcgcctgccccctctcg 910
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66275287 ccaataactgtgctgccccaccccccacatgcttctgatggtgtcgcctgccccctctca 66275228
Query: 911 cagcctaatccgaggtggacctcttccttttcccgtttacaccctaccctgtaatggctg 970
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 66275227 cagcctaatcccaggtggacctcttcc-tttcccgtttacaccctaccctgtaatggctg 66275169
Query: 971 ggaccaggccaatcctgccaccacttactgttcagttggaactaaacctgtcaccaagga 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66275168 ggaccaggccaatcctgccaccacttactgttcagttggaactaaacctgtcaccaagga 66275109
Query: 1031 ggcgtctccttggctgaaaggtgggaggggtggtttgcccgtgggtcccctccgtccccg 1090
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66275108 ggcgtctccttggctgagaggtgggaggggtggtttgcccgtgggtcccctccgtccccg 66275049
Query: 1091 gtgaaggcaaaagagaaaaaccatccctgt-ccatctcacagcacgaggccaaggac 1146
|||||||||| ||||| ||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 66275048 gtgaaggcaagagagagaaaccat-cctgtcccatctcacagcacgaggccaaggac 66274993
Score = 291 bits (147), Expect = 4e-76
Identities = 150/151 (99%)
Strand = Plus / Minus
Query: 5 gctgctcctgaccttcagtgtgttggctccagcgccatggcgcccgctaggaagttcttc 64
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 66278358 gctgctcctgaccttcagtgtgctggctccagcgccatggcgcccgctaggaagttcttc 66278299
Query: 65 gtggggggaaactggaagatgaacgggcgaaagaacaatctgggggagctcatcaacacc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66278298 gtggggggaaactggaagatgaacgggcgaaagaacaatctgggggagctcatcaacacc 66278239
Query: 125 ctcaacgcagccaagctgccggccgacaccg 155
|||||||||||||||||||||||||||||||
Sbjct: 66278238 ctcaacgcagccaagctgccggccgacaccg 66278208
Score = 268 bits (135), Expect = 6e-69
Identities = 135/135 (100%)
Strand = Plus / Minus
Query: 363 agctgattgggcagaaagtggcccatgccctggcagagggacttggagtaatcgcctgca 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66276687 agctgattgggcagaaagtggcccatgccctggcagagggacttggagtaatcgcctgca 66276628
Query: 423 ttggggagaagctagatgagcgggaagctggcatcaccgagaaggtcgttttcgagcaaa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66276627 ttggggagaagctagatgagcgggaagctggcatcaccgagaaggtcgttttcgagcaaa 66276568
Query: 483 ccaaggtcatcgcag 497
|||||||||||||||
Sbjct: 66276567 ccaaggtcatcgcag 66276553
Score = 248 bits (125), Expect = 6e-63
Identities = 125/125 (100%)
Strand = Plus / Minus
Query: 155 gaggtggtttgcgcaccccccaccgcctacattgacttcgccaggcagaagctagatccc 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66277081 gaggtggtttgcgcaccccccaccgcctacattgacttcgccaggcagaagctagatccc 66277022
Query: 215 aagattgccgtggctgcacagaactgctacaaagtggctaatggggcctttactggggag 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66277021 aagattgccgtggctgcacagaactgctacaaagtggctaatggggcctttactggggag 66276962
Query: 275 atcag 279
|||||
Sbjct: 66276961 atcag 66276957
Score = 172 bits (87), Expect = 3e-40
Identities = 90/91 (98%)
Strand = Plus / Minus
Query: 582 aggcccaggaagtacatgaaaagctccggggatggcttaagacccacgtctctgaggcag 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66275661 aggcccaggaagtacatgaaaagctccggggatggcttaagacccacgtctctgaggcag 66275602
Query: 642 tggctcagagcacccgcatcatttatggggg 672
||||||||||||||||||||||||| |||||
Sbjct: 66275601 tggctcagagcacccgcatcatttacggggg 66275571
Score = 172 bits (87), Expect = 3e-40
Identities = 87/87 (100%)
Strand = Plus / Minus
Query: 278 agccctggcatgatcaaagacctcggagccacgtgggtagtcctggggcactcggagaga 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66276846 agccctggcatgatcaaagacctcggagccacgtgggtagtcctggggcactcggagaga 66276787
Query: 338 aggcatgtctttggagagtcagatgag 364
|||||||||||||||||||||||||||
Sbjct: 66276786 aggcatgtctttggagagtcagatgag 66276760
Score = 170 bits (86), Expect = 1e-39
Identities = 89/90 (98%)
Strand = Plus / Minus
Query: 495 cagataatgtgaaggactggaacaaggttgtcctggcctatgagcctgtgtgggccattg 554
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 66276266 cagataatgtgaaggactggaacaaggttgtcctggcctatgagcctgtgtgggccatcg 66276207
Query: 555 gtaccggcaagactgccacaccccaacagg 584
||||||||||||||||||||||||||||||
Sbjct: 66276206 gtaccggcaagactgccacaccccaacagg 66276177
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,154,506
Number of extensions: 164
Number of successful extensions: 164
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 7
Length of query: 1146
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1125
Effective length of database: 2,808,413,156
Effective search space: 3159464800500
Effective search space used: 3159464800500
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)