Animal-Genome cDNA 20110601C-012197


Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012197
         (1146 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001183983.1| triosephosphate isomerase [Canis lupus famil...   476   e-134

>ref|NP_001183983.1| triosephosphate isomerase [Canis lupus familiaris].
          Length = 249

 Score =  476 bits (1226), Expect = e-134
 Identities = 235/246 (95%), Positives = 241/246 (97%)
 Frame = +2

Query: 41  MAPARKFFVGGNWKMNGRKNNLGELINTLNAAKLPADTEVVCAPPTAYIDFARQKLDPKI 220
           MAP+RKFFVGGNWKMNGRK NLGELI TLNAAK+PADTEVVCAPPTAYIDFARQKLD KI
Sbjct: 1   MAPSRKFFVGGNWKMNGRKKNLGELITTLNAAKVPADTEVVCAPPTAYIDFARQKLDAKI 60

Query: 221 AVAAQNCYKVANGAFTGEISPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVAHALAE 400
           AVAAQNCYKV NGAFTGEISPGMIKD GATWVVLGHSERRHVFGESDELIGQKVAHALAE
Sbjct: 61  AVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAE 120

Query: 401 GLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWNKVVLAYEPVWAIGTGKTATPQ 580
           GLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDW+KVVLAYEPVWAIGTGKTATPQ
Sbjct: 121 GLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQ 180

Query: 581 QAQEVHEKLRGWLKTHVSEAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE 760
           QAQEVHEKLRGWLK++VS+AVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE
Sbjct: 181 QAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE 240

Query: 761 FVDIIN 778
           FVDIIN
Sbjct: 241 FVDIIN 246


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 58,454,046
Number of extensions: 1976900
Number of successful extensions: 7931
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7891
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 277
Effective length of database: 15,374,224
Effective search space: 4258660048
Effective search space used: 4258660048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012197

Animal-Genome cDNA 20110601C-012197


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012197
         (1146 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001013607.1| triosephosphate isomerase [Bos taurus].           486   e-137

>ref|NP_001013607.1| triosephosphate isomerase [Bos taurus].
          Length = 249

 Score =  486 bits (1250), Expect = e-137
 Identities = 239/246 (97%), Positives = 245/246 (99%)
 Frame = +2

Query: 41  MAPARKFFVGGNWKMNGRKNNLGELINTLNAAKLPADTEVVCAPPTAYIDFARQKLDPKI 220
           MAP+RKFFVGGNWKMNGRKNNLGELINTLNAAK+PADTEVVCAPPTAYIDFARQKLDPKI
Sbjct: 1   MAPSRKFFVGGNWKMNGRKNNLGELINTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKI 60

Query: 221 AVAAQNCYKVANGAFTGEISPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVAHALAE 400
           AVAAQNCYKVANGAFTGEISPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVAHALAE
Sbjct: 61  AVAAQNCYKVANGAFTGEISPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVAHALAE 120

Query: 401 GLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWNKVVLAYEPVWAIGTGKTATPQ 580
           GLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDW+KVVLAYEPVWAIGTGKTATPQ
Sbjct: 121 GLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQ 180

Query: 581 QAQEVHEKLRGWLKTHVSEAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE 760
           QAQEVHEKLRGWLK++VS+AVAQS RIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE
Sbjct: 181 QAQEVHEKLRGWLKSNVSDAVAQSARIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE 240

Query: 761 FVDIIN 778
           FVDIIN
Sbjct: 241 FVDIIN 246


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,929,218
Number of extensions: 1916468
Number of successful extensions: 7737
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7685
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 278
Effective length of database: 14,240,222
Effective search space: 3958781716
Effective search space used: 3958781716
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012197
         (1146 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001032228.1| triosephosphate isomerase [Sus scrofa].           487   e-138

>ref|NP_001032228.1| triosephosphate isomerase [Sus scrofa].
          Length = 248

 Score =  487 bits (1254), Expect = e-138
 Identities = 241/246 (97%), Positives = 241/246 (97%)
 Frame = +2

Query: 41  MAPARKFFVGGNWKMNGRKNNLGELINTLNAAKLPADTEVVCAPPTAYIDFARQKLDPKI 220
           MAPARKFFVGGNWKMNGRKNNLGELINTLNAAKLPADTEVVCAPPTAYIDFARQKLDPKI
Sbjct: 1   MAPARKFFVGGNWKMNGRKNNLGELINTLNAAKLPADTEVVCAPPTAYIDFARQKLDPKI 60

Query: 221 AVAAQNCYKVANGAFTGEISPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVAHALAE 400
           AVAAQNCYKVANGAFTGEI PGMIKDLGATWVVLGHSERRHVFGESDELIGQKVAHALAE
Sbjct: 61  AVAAQNCYKVANGAFTGEIGPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVAHALAE 120

Query: 401 GLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWNKVVLAYEPVWAIGTGKTATPQ 580
           GLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWNKVVLAYEPVWAIGTGKTATPQ
Sbjct: 121 GLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWNKVVLAYEPVWAIGTGKTATPQ 180

Query: 581 QAQEVHEKLRGWLKTHVSEAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE 760
           QAQEVHEKLRGWLKTHV EAVA STRIIYGGSVTGATCKELASQPDVDGF V GASLKPE
Sbjct: 181 QAQEVHEKLRGWLKTHVPEAVAHSTRIIYGGSVTGATCKELASQPDVDGFRVSGASLKPE 240

Query: 761 FVDIIN 778
           FVDIIN
Sbjct: 241 FVDIIN 246


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,207,475
Number of extensions: 1242483
Number of successful extensions: 4930
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4908
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 281
Effective length of database: 8,829,335
Effective search space: 2481043135
Effective search space used: 2481043135
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012197
         (1146 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_033441.2| triosephosphate isomerase [Mus musculus].            472   e-133

>ref|NP_033441.2| triosephosphate isomerase [Mus musculus].
          Length = 299

 Score =  472 bits (1215), Expect = e-133
 Identities = 236/263 (89%), Positives = 244/263 (92%), Gaps = 4/263 (1%)
 Frame = +2

Query: 2   WAAP----DLQCVGSSAMAPARKFFVGGNWKMNGRKNNLGELINTLNAAKLPADTEVVCA 169
           W  P    DLQ +    MAP RKFFVGGNWKMNGRK  LGELI TLNAA +PA TEVVCA
Sbjct: 34  WREPCVCTDLQRLEPGTMAPTRKFFVGGNWKMNGRKKCLGELICTLNAANVPAGTEVVCA 93

Query: 170 PPTAYIDFARQKLDPKIAVAAQNCYKVANGAFTGEISPGMIKDLGATWVVLGHSERRHVF 349
           PPTAYIDFARQKLDPKIAVAAQNCYKV NGAFTGEISPGMIKDLGATWVVLGHSERRHVF
Sbjct: 94  PPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDLGATWVVLGHSERRHVF 153

Query: 350 GESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWNKVVL 529
           GESDELIGQKV+HALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDW+KVVL
Sbjct: 154 GESDELIGQKVSHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVL 213

Query: 530 AYEPVWAIGTGKTATPQQAQEVHEKLRGWLKTHVSEAVAQSTRIIYGGSVTGATCKELAS 709
           AYEPVWAIGTGKTATPQQAQEVHEKLRGWLK++V++ VAQSTRIIYGGSVTGATCKELAS
Sbjct: 214 AYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVNDGVAQSTRIIYGGSVTGATCKELAS 273

Query: 710 QPDVDGFLVGGASLKPEFVDIIN 778
           QPDVDGFLVGGASLKPEFVDIIN
Sbjct: 274 QPDVDGFLVGGASLKPEFVDIIN 296


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,012,868
Number of extensions: 1587450
Number of successful extensions: 6150
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6123
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 279
Effective length of database: 12,523,851
Effective search space: 3494154429
Effective search space used: 3494154429
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012197
         (1146 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001152759.1| triosephosphate isomerase isoform 2 [Homo sa...   490   e-138
Alignment   gi|NP_000356.1| triosephosphate isomerase isoform 1 [Homo sapie...   478   e-135

>ref|NP_001152759.1| triosephosphate isomerase isoform 2 [Homo sapiens].
          Length = 286

 Score =  490 bits (1261), Expect = e-138
 Identities = 243/258 (94%), Positives = 251/258 (97%)
 Frame = +2

Query: 5   AAPDLQCVGSSAMAPARKFFVGGNWKMNGRKNNLGELINTLNAAKLPADTEVVCAPPTAY 184
           A  DLQ +GSSAMAP+RKFFVGGNWKMNGRK +LGELI TLNAAK+PADTEVVCAPPTAY
Sbjct: 26  ADTDLQRLGSSAMAPSRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAY 85

Query: 185 IDFARQKLDPKIAVAAQNCYKVANGAFTGEISPGMIKDLGATWVVLGHSERRHVFGESDE 364
           IDFARQKLDPKIAVAAQNCYKV NGAFTGEISPGMIKD GATWVVLGHSERRHVFGESDE
Sbjct: 86  IDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDE 145

Query: 365 LIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWNKVVLAYEPV 544
           LIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDW+KVVLAYEPV
Sbjct: 146 LIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPV 205

Query: 545 WAIGTGKTATPQQAQEVHEKLRGWLKTHVSEAVAQSTRIIYGGSVTGATCKELASQPDVD 724
           WAIGTGKTATPQQAQEVHEKLRGWLK++VS+AVAQSTRIIYGGSVTGATCKELASQPDVD
Sbjct: 206 WAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVD 265

Query: 725 GFLVGGASLKPEFVDIIN 778
           GFLVGGASLKPEFVDIIN
Sbjct: 266 GFLVGGASLKPEFVDIIN 283


>ref|NP_000356.1| triosephosphate isomerase isoform 1 [Homo sapiens].
          Length = 249

 Score =  478 bits (1229), Expect = e-135
 Identities = 235/246 (95%), Positives = 242/246 (98%)
 Frame = +2

Query: 41  MAPARKFFVGGNWKMNGRKNNLGELINTLNAAKLPADTEVVCAPPTAYIDFARQKLDPKI 220
           MAP+RKFFVGGNWKMNGRK +LGELI TLNAAK+PADTEVVCAPPTAYIDFARQKLDPKI
Sbjct: 1   MAPSRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKI 60

Query: 221 AVAAQNCYKVANGAFTGEISPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVAHALAE 400
           AVAAQNCYKV NGAFTGEISPGMIKD GATWVVLGHSERRHVFGESDELIGQKVAHALAE
Sbjct: 61  AVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAE 120

Query: 401 GLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWNKVVLAYEPVWAIGTGKTATPQ 580
           GLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDW+KVVLAYEPVWAIGTGKTATPQ
Sbjct: 121 GLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQ 180

Query: 581 QAQEVHEKLRGWLKTHVSEAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE 760
           QAQEVHEKLRGWLK++VS+AVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE
Sbjct: 181 QAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE 240

Query: 761 FVDIIN 778
           FVDIIN
Sbjct: 241 FVDIIN 246


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 57,175,223
Number of extensions: 1932310
Number of successful extensions: 7620
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7574
Number of HSP's successfully gapped: 2
Length of query: 382
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 278
Effective length of database: 14,868,908
Effective search space: 4133556424
Effective search space used: 4133556424
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012197
         (1146 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr05                                                         858   0.0  

>Sscrofa_Chr05 
||          Length = 111506441

 Score =  858 bits (433), Expect = 0.0
 Identities = 469/477 (98%), Gaps = 3/477 (0%)
 Strand = Plus / Minus

                                                                            
Query: 671      ggctctgtgactggggcaacctgcaaagagctggcgagccagcctgatgtggacgggttc 730
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66275467 ggctctgtgactggggcaacctgcaaagagctggcgagccagcctgatgtggacgggttc 66275408

                                                                            
Query: 731      cttgtgggtggcgcttccctcaagcctgaatttgtggacatcatcaatgccaaataataa 790
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66275407 cttgtgggtggcgcttccctcaagcctgaatttgtggacatcatcaatgccaaataataa 66275348

                                                                            
Query: 791      gcccatccatcgcccctacctccccttccctccaagccagggactagggagctcagaagc 850
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66275347 gcccatccatcgcccctacctccccttccctccaagccagggactagggagctcagaagc 66275288

                                                                            
Query: 851      ccaataactgtgctgccccaccccccacatgcttctgatggtgtcgcctgccccctctcg 910
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 66275287 ccaataactgtgctgccccaccccccacatgcttctgatggtgtcgcctgccccctctca 66275228

                                                                            
Query: 911      cagcctaatccgaggtggacctcttccttttcccgtttacaccctaccctgtaatggctg 970
                ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 66275227 cagcctaatcccaggtggacctcttcc-tttcccgtttacaccctaccctgtaatggctg 66275169

                                                                            
Query: 971      ggaccaggccaatcctgccaccacttactgttcagttggaactaaacctgtcaccaagga 1030
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66275168 ggaccaggccaatcctgccaccacttactgttcagttggaactaaacctgtcaccaagga 66275109

                                                                            
Query: 1031     ggcgtctccttggctgaaaggtgggaggggtggtttgcccgtgggtcccctccgtccccg 1090
                ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66275108 ggcgtctccttggctgagaggtgggaggggtggtttgcccgtgggtcccctccgtccccg 66275049

                                                                         
Query: 1091     gtgaaggcaaaagagaaaaaccatccctgt-ccatctcacagcacgaggccaaggac 1146
                |||||||||| ||||| ||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 66275048 gtgaaggcaagagagagaaaccat-cctgtcccatctcacagcacgaggccaaggac 66274993



 Score =  291 bits (147), Expect = 4e-76
 Identities = 150/151 (99%)
 Strand = Plus / Minus

                                                                            
Query: 5        gctgctcctgaccttcagtgtgttggctccagcgccatggcgcccgctaggaagttcttc 64
                |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 66278358 gctgctcctgaccttcagtgtgctggctccagcgccatggcgcccgctaggaagttcttc 66278299

                                                                            
Query: 65       gtggggggaaactggaagatgaacgggcgaaagaacaatctgggggagctcatcaacacc 124
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66278298 gtggggggaaactggaagatgaacgggcgaaagaacaatctgggggagctcatcaacacc 66278239

                                               
Query: 125      ctcaacgcagccaagctgccggccgacaccg 155
                |||||||||||||||||||||||||||||||
Sbjct: 66278238 ctcaacgcagccaagctgccggccgacaccg 66278208



 Score =  268 bits (135), Expect = 6e-69
 Identities = 135/135 (100%)
 Strand = Plus / Minus

                                                                            
Query: 363      agctgattgggcagaaagtggcccatgccctggcagagggacttggagtaatcgcctgca 422
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66276687 agctgattgggcagaaagtggcccatgccctggcagagggacttggagtaatcgcctgca 66276628

                                                                            
Query: 423      ttggggagaagctagatgagcgggaagctggcatcaccgagaaggtcgttttcgagcaaa 482
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66276627 ttggggagaagctagatgagcgggaagctggcatcaccgagaaggtcgttttcgagcaaa 66276568

                               
Query: 483      ccaaggtcatcgcag 497
                |||||||||||||||
Sbjct: 66276567 ccaaggtcatcgcag 66276553



 Score =  248 bits (125), Expect = 6e-63
 Identities = 125/125 (100%)
 Strand = Plus / Minus

                                                                            
Query: 155      gaggtggtttgcgcaccccccaccgcctacattgacttcgccaggcagaagctagatccc 214
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66277081 gaggtggtttgcgcaccccccaccgcctacattgacttcgccaggcagaagctagatccc 66277022

                                                                            
Query: 215      aagattgccgtggctgcacagaactgctacaaagtggctaatggggcctttactggggag 274
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66277021 aagattgccgtggctgcacagaactgctacaaagtggctaatggggcctttactggggag 66276962

                     
Query: 275      atcag 279
                |||||
Sbjct: 66276961 atcag 66276957



 Score =  172 bits (87), Expect = 3e-40
 Identities = 90/91 (98%)
 Strand = Plus / Minus

                                                                            
Query: 582      aggcccaggaagtacatgaaaagctccggggatggcttaagacccacgtctctgaggcag 641
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66275661 aggcccaggaagtacatgaaaagctccggggatggcttaagacccacgtctctgaggcag 66275602

                                               
Query: 642      tggctcagagcacccgcatcatttatggggg 672
                ||||||||||||||||||||||||| |||||
Sbjct: 66275601 tggctcagagcacccgcatcatttacggggg 66275571



 Score =  172 bits (87), Expect = 3e-40
 Identities = 87/87 (100%)
 Strand = Plus / Minus

                                                                            
Query: 278      agccctggcatgatcaaagacctcggagccacgtgggtagtcctggggcactcggagaga 337
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66276846 agccctggcatgatcaaagacctcggagccacgtgggtagtcctggggcactcggagaga 66276787

                                           
Query: 338      aggcatgtctttggagagtcagatgag 364
                |||||||||||||||||||||||||||
Sbjct: 66276786 aggcatgtctttggagagtcagatgag 66276760



 Score =  170 bits (86), Expect = 1e-39
 Identities = 89/90 (98%)
 Strand = Plus / Minus

                                                                            
Query: 495      cagataatgtgaaggactggaacaaggttgtcctggcctatgagcctgtgtgggccattg 554
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 66276266 cagataatgtgaaggactggaacaaggttgtcctggcctatgagcctgtgtgggccatcg 66276207

                                              
Query: 555      gtaccggcaagactgccacaccccaacagg 584
                ||||||||||||||||||||||||||||||
Sbjct: 66276206 gtaccggcaagactgccacaccccaacagg 66276177


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,154,506
Number of extensions: 164
Number of successful extensions: 164
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 7
Length of query: 1146
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1125
Effective length of database: 2,808,413,156
Effective search space: 3159464800500
Effective search space used: 3159464800500
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)