Animal-Genome cDNA 20110601C-012325


Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012325
         (1288 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_852741.1| PREDICTED: similar to transgelin 2 [Canis famil...   426   e-119
Alignment   gi|XP_535738.1| PREDICTED: similar to neuronal protein [Canis f...   300   2e-81
Alignment   gi|XP_536561.2| PREDICTED: similar to transgelin isoform 1 [Can...   274   2e-73
Alignment   gi|XP_861115.1| PREDICTED: similar to transgelin isoform 3 [Can...   262   5e-70
Alignment   gi|XP_861087.1| PREDICTED: similar to transgelin isoform 2 [Can...   262   5e-70
Alignment   gi|XP_867647.1| PREDICTED: similar to calponin 1, basic, smooth...   147   2e-35
Alignment   gi|XP_542053.1| PREDICTED: similar to calponin 1, basic, smooth...   147   2e-35
Alignment   gi|XP_854646.1| PREDICTED: similar to calponin 2 isoform a isof...   132   5e-31
Alignment   gi|XP_537063.2| PREDICTED: similar to calponin 3 [Canis familia...   126   5e-29
Alignment   gi|XP_868614.1| PREDICTED: similar to calponin 2 isoform a isof...   125   9e-29

>ref|XP_852741.1| PREDICTED: similar to transgelin 2 [Canis familiaris].
          Length = 271

 Score =  426 bits (1096), Expect = e-119
 Identities = 206/206 (100%), Positives = 206/206 (100%)
 Frame = +1

Query: 64  QPPLPFGMANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQ 243
           QPPLPFGMANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQ
Sbjct: 66  QPPLPFGMANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQ 125

Query: 244 NWLKDGTVLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQT 423
           NWLKDGTVLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQT
Sbjct: 126 NWLKDGTVLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQT 185

Query: 424 VDLWEGKNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNV 603
           VDLWEGKNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNV
Sbjct: 186 VDLWEGKNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNV 245

Query: 604 IGLQMGTNRGASQAGMTGYGMPRQIL 681
           IGLQMGTNRGASQAGMTGYGMPRQIL
Sbjct: 246 IGLQMGTNRGASQAGMTGYGMPRQIL 271


>ref|XP_535738.1| PREDICTED: similar to neuronal protein [Canis familiaris].
          Length = 199

 Score =  300 bits (769), Expect = 2e-81
 Identities = 139/199 (69%), Positives = 168/199 (84%)
 Frame = +1

Query: 85  MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
           MANRGP+YGLSREVQ+KIE++YDADLE  L+ WI  QC +D+  P PGR +FQ WL DGT
Sbjct: 1   MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIAHPPPGRAHFQQWLMDGT 60

Query: 265 VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK 444
           VLC+LIN LYP GQ P+ KI  S MAFKQMEQISQFL+AAE YG+ TTDIFQTVDLWEGK
Sbjct: 61  VLCKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAEIYGVRTTDIFQTVDLWEGK 120

Query: 445 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT 624
           +MA VQRTLM LG +AV +DDG + G+P+WF +K+++N R FS+ QL++G+NVIGLQMG+
Sbjct: 121 DMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGS 180

Query: 625 NRGASQAGMTGYGMPRQIL 681
           N+GASQAGMTGYGMPRQI+
Sbjct: 181 NKGASQAGMTGYGMPRQIM 199


>ref|XP_536561.2| PREDICTED: similar to transgelin isoform 1 [Canis familiaris].
          Length = 201

 Score =  274 bits (700), Expect = 2e-73
 Identities = 129/200 (64%), Positives = 164/200 (82%), Gaps = 1/200 (0%)
 Frame = +1

Query: 85  MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
           MAN+GP+YG+SREVQ KIEK+YD +LE+ L++WI  QC  DVGRP  GR  FQ WLK+G 
Sbjct: 1   MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIVMQCGSDVGRPDRGRLGFQVWLKNGV 60

Query: 265 VLCELINGLYPEGQAPVKKIQ-ASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEG 441
           +L +L+N LYP+G  PVK  +   +M FKQMEQ++QFL+AAE YG+  TD+FQTVDL+EG
Sbjct: 61  ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLYEG 120

Query: 442 KNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMG 621
           K++A VQRTLM LG LAV ++DG + GDPNWF KK++E+ R F+++QLQEGK+VIGLQMG
Sbjct: 121 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 180

Query: 622 TNRGASQAGMTGYGMPRQIL 681
           +NRGASQAGMTGYG PRQI+
Sbjct: 181 SNRGASQAGMTGYGRPRQII 200


>ref|XP_861115.1| PREDICTED: similar to transgelin isoform 3 [Canis familiaris].
          Length = 220

 Score =  262 bits (670), Expect = 5e-70
 Identities = 129/219 (58%), Positives = 164/219 (74%), Gaps = 20/219 (9%)
 Frame = +1

Query: 85  MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
           MAN+GP+YG+SREVQ KIEK+YD +LE+ L++WI  QC  DVGRP  GR  FQ WLK+G 
Sbjct: 1   MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIVMQCGSDVGRPDRGRLGFQVWLKNGV 60

Query: 265 VLCELINGLYPEGQAPVKKIQ-ASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEG 441
           +L +L+N LYP+G  PVK  +   +M FKQMEQ++QFL+AAE YG+  TD+FQTVDL+EG
Sbjct: 61  ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLYEG 120

Query: 442 KNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPK-------------------KSKENPR 564
           K++A VQRTLM LG LAV ++DG + GDPNWF K                   K++E+ R
Sbjct: 121 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKYVAARVPCPESLSWLPTSRKAQEHKR 180

Query: 565 NFSDNQLQEGKNVIGLQMGTNRGASQAGMTGYGMPRQIL 681
            F+++QLQEGK+VIGLQMG+NRGASQAGMTGYG PRQI+
Sbjct: 181 EFTESQLQEGKHVIGLQMGSNRGASQAGMTGYGRPRQII 219


>ref|XP_861087.1| PREDICTED: similar to transgelin isoform 2 [Canis familiaris].
          Length = 196

 Score =  262 bits (670), Expect = 5e-70
 Identities = 127/200 (63%), Positives = 159/200 (79%), Gaps = 1/200 (0%)
 Frame = +1

Query: 85  MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
           MAN+GP+YG+SREVQ KIEK+YD +LE+ L++WI  QC  DVGRP  GR  FQ WLK+G 
Sbjct: 1   MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIVMQCGSDVGRPDRGRLGFQVWLKNGV 60

Query: 265 VLCELINGLYPEGQAPVKKIQ-ASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEG 441
           +L +L+N LYP+G  PVK  +   +M FKQMEQ++QFL+AAE YG+  TD+FQTVDL+EG
Sbjct: 61  ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLYEG 120

Query: 442 KNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMG 621
           K++A VQRTLM LG LAV ++DG + GDPNWF K      R F+++QLQEGK+VIGLQMG
Sbjct: 121 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKY-----REFTESQLQEGKHVIGLQMG 175

Query: 622 TNRGASQAGMTGYGMPRQIL 681
           +NRGASQAGMTGYG PRQI+
Sbjct: 176 SNRGASQAGMTGYGRPRQII 195


>ref|XP_867647.1| PREDICTED: similar to calponin 1, basic, smooth muscle isoform 3
           [Canis familiaris].
          Length = 258

 Score =  147 bits (372), Expect = 2e-35
 Identities = 83/196 (42%), Positives = 115/196 (58%)
 Frame = +1

Query: 91  NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 270
           NRGPAYGLS EV+ K+ ++YD   EQ L +WI     + +G       NF + LKDG +L
Sbjct: 7   NRGPAYGLSAEVKNKLAQKYDHQREQELREWIEGVTGRRIGN------NFMDGLKDGIIL 60

Query: 271 CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 450
           CE IN L P     VKK+  ST  + Q+E I  F++A  +YG+   DIF+  DL+E  N 
Sbjct: 61  CEFINKLQP---GSVKKVNESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNH 117

Query: 451 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 630
             VQ TL+ L  +A  + + +  G      K +++  R F   +L+EG+N+IGLQMGTN+
Sbjct: 118 TQVQSTLLALASMAKTKGNKVNVG-----VKYAEKQERKFEPEKLREGRNIIGLQMGTNK 172

Query: 631 GASQAGMTGYGMPRQI 678
            ASQ GMT YG  R +
Sbjct: 173 FASQQGMTAYGTRRHL 188


>ref|XP_542053.1| PREDICTED: similar to calponin 1, basic, smooth muscle isoform 1
           [Canis familiaris].
          Length = 297

 Score =  147 bits (372), Expect = 2e-35
 Identities = 83/196 (42%), Positives = 115/196 (58%)
 Frame = +1

Query: 91  NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 270
           NRGPAYGLS EV+ K+ ++YD   EQ L +WI     + +G       NF + LKDG +L
Sbjct: 7   NRGPAYGLSAEVKNKLAQKYDHQREQELREWIEGVTGRRIGN------NFMDGLKDGIIL 60

Query: 271 CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 450
           CE IN L P     VKK+  ST  + Q+E I  F++A  +YG+   DIF+  DL+E  N 
Sbjct: 61  CEFINKLQP---GSVKKVNESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNH 117

Query: 451 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 630
             VQ TL+ L  +A  + + +  G      K +++  R F   +L+EG+N+IGLQMGTN+
Sbjct: 118 TQVQSTLLALASMAKTKGNKVNVG-----VKYAEKQERKFEPEKLREGRNIIGLQMGTNK 172

Query: 631 GASQAGMTGYGMPRQI 678
            ASQ GMT YG  R +
Sbjct: 173 FASQQGMTAYGTRRHL 188


>ref|XP_854646.1| PREDICTED: similar to calponin 2 isoform a isoform 1 [Canis
           familiaris].
          Length = 309

 Score =  132 bits (333), Expect = 5e-31
 Identities = 82/196 (41%), Positives = 112/196 (57%)
 Frame = +1

Query: 91  NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 270
           N+GP+YGLS EV+ ++  +YD   E  L  WI       +G       +FQ  LKDG +L
Sbjct: 7   NKGPSYGLSAEVKNRLLSKYDPQKEAELRSWIEGLTGLSIG------PDFQKGLKDGVIL 60

Query: 271 CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 450
           C L+N L P     V KI  S   + Q+E +S F++A   YG+N  D+F+  DL+E  NM
Sbjct: 61  CTLMNKLQP---GSVPKINRSLQNWHQLENLSTFIKAMVSYGMNPVDLFEANDLFESGNM 117

Query: 451 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 630
             VQ +L+ L G A  +  GL SG  +   K S++  RNF D  ++ G  VIGLQMGTN+
Sbjct: 118 TQVQVSLLALAGKAKTK--GLQSG-VDIGVKYSEKQERNFDDATMKAGHCVIGLQMGTNK 174

Query: 631 GASQAGMTGYGMPRQI 678
            ASQ+GMT YG  R +
Sbjct: 175 CASQSGMTAYGTRRHL 190


>ref|XP_537063.2| PREDICTED: similar to calponin 3 [Canis familiaris].
          Length = 360

 Score =  126 bits (316), Expect = 5e-29
 Identities = 76/182 (41%), Positives = 104/182 (57%)
 Frame = +1

Query: 133 KIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINGLYPEGQAP 312
           KI  +YD   E+ L  WI       +G       NFQ  LKDG +LCELIN L P     
Sbjct: 50  KIASKYDHQAEEDLRNWIEEVTGMSIGT------NFQLGLKDGIILCELINKLQP---GS 100

Query: 313 VKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNMACVQRTLMNLGGLA 492
           VKK+  S++ + Q+E I  F++A + YG+   DIF+  DL+E  NM  VQ TL+ L GLA
Sbjct: 101 VKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTTLVALAGLA 160

Query: 493 VARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNRGASQAGMTGYGMPR 672
             +    F    +   K +++  R F + +L+ G++VIGLQMGTN+ ASQAGMT YG  R
Sbjct: 161 KTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTAYGTRR 217

Query: 673 QI 678
            +
Sbjct: 218 HL 219


>ref|XP_868614.1| PREDICTED: similar to calponin 2 isoform a isoform 2 [Canis
           familiaris].
          Length = 300

 Score =  125 bits (314), Expect = 9e-29
 Identities = 79/196 (40%), Positives = 107/196 (54%)
 Frame = +1

Query: 91  NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 270
           N+GP+YGLS EV+ ++  +YD   E  L  WI       +G       +FQ  LKDG +L
Sbjct: 7   NKGPSYGLSAEVKNRLLSKYDPQKEAELRSWIEGLTGLSIG------PDFQKGLKDGVIL 60

Query: 271 CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 450
           C L+N L P     V KI  S   + Q+E +S F++A   YG+N  D+F+  DL+E  NM
Sbjct: 61  CTLMNKLQP---GSVPKINRSLQNWHQLENLSTFIKAMVSYGMNPVDLFEANDLFESGNM 117

Query: 451 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 630
             VQ           A+  GL SG  +   K S++  RNF D  ++ G  VIGLQMGTN+
Sbjct: 118 TQVQ-----------AKTKGLQSG-VDIGVKYSEKQERNFDDATMKAGHCVIGLQMGTNK 165

Query: 631 GASQAGMTGYGMPRQI 678
            ASQ+GMT YG  R +
Sbjct: 166 CASQSGMTAYGTRRHL 181


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 57,860,644
Number of extensions: 1811799
Number of successful extensions: 7273
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 7230
Number of HSP's successfully gapped: 13
Length of query: 429
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 323
Effective length of database: 15,340,888
Effective search space: 4955106824
Effective search space used: 4955106824
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012325

Animal-Genome cDNA 20110601C-012325


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012325
         (1288 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001013617.1| transgelin-2 [Bos taurus].                        407   e-113
Alignment   gi|XP_002690168.1| PREDICTED: transgelin 2-like [Bos taurus].        357   1e-98
Alignment   gi|XP_582214.3| PREDICTED: transgelin 2 [Bos taurus].                357   1e-98
Alignment   gi|NP_001029671.1| transgelin-3 [Bos taurus].                        300   2e-81
Alignment   gi|NP_001039614.1| transgelin [Bos taurus].                          273   2e-73
Alignment   gi|XP_002686086.1| PREDICTED: calponin 3-like [Bos taurus].          149   5e-36
Alignment   gi|XP_001254702.1| PREDICTED: calponin 3 isoform 1 [Bos taurus].     149   5e-36
Alignment   gi|NP_001039844.1| calponin-1 [Bos taurus].                          147   2e-35
Alignment   gi|NP_001033268.1| calponin-3 [Bos taurus].                          146   4e-35
Alignment   gi|NP_001030497.1| calponin-2 [Bos taurus].                          134   1e-31

>ref|NP_001013617.1| transgelin-2 [Bos taurus].
          Length = 199

 Score =  407 bits (1046), Expect = e-113
 Identities = 198/199 (99%), Positives = 198/199 (99%)
 Frame = +1

Query: 85  MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
           MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT
Sbjct: 1   MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 60

Query: 265 VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK 444
           VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK
Sbjct: 61  VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK 120

Query: 445 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT 624
           NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPR FSDNQLQEGKNVIGLQMGT
Sbjct: 121 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRYFSDNQLQEGKNVIGLQMGT 180

Query: 625 NRGASQAGMTGYGMPRQIL 681
           NRGASQAGMTGYGMPRQIL
Sbjct: 181 NRGASQAGMTGYGMPRQIL 199


>ref|XP_002690168.1| PREDICTED: transgelin 2-like [Bos taurus].
          Length = 199

 Score =  357 bits (917), Expect = 1e-98
 Identities = 176/199 (88%), Positives = 180/199 (90%)
 Frame = +1

Query: 85  MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
           MANRGPAYGLS+EVQQKI+KQYDADLEQILIQWITTQCRK V RPQPG  NFQNWLKDGT
Sbjct: 1   MANRGPAYGLSQEVQQKIDKQYDADLEQILIQWITTQCRKHVSRPQPGCTNFQNWLKDGT 60

Query: 265 VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK 444
           VLCELINGLYPEGQAPVKKIQAST AFKQM QISQFLQAAERYGINT DI QTVDLWEGK
Sbjct: 61  VLCELINGLYPEGQAPVKKIQASTTAFKQMGQISQFLQAAERYGINTNDISQTVDLWEGK 120

Query: 445 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT 624
           NMACVQRTLMNLG L VA DDGLFSGDPNWF KKSKENPR F DNQLQEGKN+ GLQMGT
Sbjct: 121 NMACVQRTLMNLGRLVVAWDDGLFSGDPNWFTKKSKENPRYFPDNQLQEGKNLFGLQMGT 180

Query: 625 NRGASQAGMTGYGMPRQIL 681
           N GASQAG+T Y MP QIL
Sbjct: 181 NHGASQAGLTDYAMPCQIL 199


>ref|XP_582214.3| PREDICTED: transgelin 2 [Bos taurus].
          Length = 199

 Score =  357 bits (917), Expect = 1e-98
 Identities = 176/199 (88%), Positives = 180/199 (90%)
 Frame = +1

Query: 85  MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
           MANRGPAYGLS+EVQQKI+KQYDADLEQILIQWITTQCRK V RPQPG  NFQNWLKDGT
Sbjct: 1   MANRGPAYGLSQEVQQKIDKQYDADLEQILIQWITTQCRKHVSRPQPGCTNFQNWLKDGT 60

Query: 265 VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK 444
           VLCELINGLYPEGQAPVKKIQAST AFKQM QISQFLQAAERYGINT DI QTVDLWEGK
Sbjct: 61  VLCELINGLYPEGQAPVKKIQASTTAFKQMGQISQFLQAAERYGINTNDISQTVDLWEGK 120

Query: 445 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT 624
           NMACVQRTLMNLG L VA DDGLFSGDPNWF KKSKENPR F DNQLQEGKN+ GLQMGT
Sbjct: 121 NMACVQRTLMNLGRLVVAWDDGLFSGDPNWFTKKSKENPRYFPDNQLQEGKNLFGLQMGT 180

Query: 625 NRGASQAGMTGYGMPRQIL 681
           N GASQAG+T Y MP QIL
Sbjct: 181 NHGASQAGLTDYAMPCQIL 199


>ref|NP_001029671.1| transgelin-3 [Bos taurus].
          Length = 199

 Score =  300 bits (767), Expect = 2e-81
 Identities = 139/199 (69%), Positives = 168/199 (84%)
 Frame = +1

Query: 85  MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
           MANRGP+YGLSREVQ+KIE++YDADLE  L+ WI  QC +D+  P PGR +FQ WL DGT
Sbjct: 1   MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRAHFQKWLMDGT 60

Query: 265 VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK 444
           VLC+LIN LYP GQ P+ KI  S MAFKQMEQISQFL+AAE YG+ TTDIFQTVDLWEGK
Sbjct: 61  VLCKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAEIYGVRTTDIFQTVDLWEGK 120

Query: 445 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT 624
           +MA VQRTLM LG +AV +DDG + G+P+WF +K+++N R FS+ QL++G+NVIGLQMG+
Sbjct: 121 DMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGS 180

Query: 625 NRGASQAGMTGYGMPRQIL 681
           N+GASQAGMTGYGMPRQI+
Sbjct: 181 NKGASQAGMTGYGMPRQIM 199


>ref|NP_001039614.1| transgelin [Bos taurus].
          Length = 201

 Score =  273 bits (698), Expect = 2e-73
 Identities = 129/200 (64%), Positives = 164/200 (82%), Gaps = 1/200 (0%)
 Frame = +1

Query: 85  MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
           MAN+GP+YG+SREVQ KIEK+YD +LE+ L++WI  QC  DVGRP  GR  FQ WLK+G 
Sbjct: 1   MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIVMQCGPDVGRPDRGRLGFQVWLKNGV 60

Query: 265 VLCELINGLYPEGQAPVKKIQ-ASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEG 441
           +L +L+N LYP+G  PVK  +   +M FKQMEQ++QFL+AAE YG+  TD+FQTVDL+EG
Sbjct: 61  ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 120

Query: 442 KNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMG 621
           K++A VQRTLM LG LAV ++DG + GDPNWF KK++E+ R F+++QLQEGK+VIGLQMG
Sbjct: 121 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 180

Query: 622 TNRGASQAGMTGYGMPRQIL 681
           +NRGASQAGMTGYG PRQI+
Sbjct: 181 SNRGASQAGMTGYGRPRQII 200


>ref|XP_002686086.1| PREDICTED: calponin 3-like [Bos taurus].
          Length = 329

 Score =  149 bits (376), Expect = 5e-36
 Identities = 86/196 (43%), Positives = 117/196 (59%)
 Frame = +1

Query: 91  NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 270
           N+GP+YGLS EV+ KI  +YD   E+ L  WI       +G       NFQ  LKDG +L
Sbjct: 5   NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGA------NFQLGLKDGIIL 58

Query: 271 CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 450
           CELIN L P    PVKK+  S++ + Q+E I  F++A + YG+   DIF+  DL+E  NM
Sbjct: 59  CELINKLQP---GPVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNM 115

Query: 451 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 630
             VQ TL+ L GLA  +    F    +   K +++  R F + +L+ G++VIGLQMGTN+
Sbjct: 116 TQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNK 172

Query: 631 GASQAGMTGYGMPRQI 678
            ASQAGMT YG  R +
Sbjct: 173 CASQAGMTAYGTRRHL 188


>ref|XP_001254702.1| PREDICTED: calponin 3 isoform 1 [Bos taurus].
          Length = 329

 Score =  149 bits (376), Expect = 5e-36
 Identities = 86/196 (43%), Positives = 117/196 (59%)
 Frame = +1

Query: 91  NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 270
           N+GP+YGLS EV+ KI  +YD   E+ L  WI       +G       NFQ  LKDG +L
Sbjct: 5   NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGA------NFQLGLKDGIIL 58

Query: 271 CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 450
           CELIN L P    PVKK+  S++ + Q+E I  F++A + YG+   DIF+  DL+E  NM
Sbjct: 59  CELINKLQP---GPVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNM 115

Query: 451 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 630
             VQ TL+ L GLA  +    F    +   K +++  R F + +L+ G++VIGLQMGTN+
Sbjct: 116 TQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNK 172

Query: 631 GASQAGMTGYGMPRQI 678
            ASQAGMT YG  R +
Sbjct: 173 CASQAGMTAYGTRRHL 188


>ref|NP_001039844.1| calponin-1 [Bos taurus].
          Length = 297

 Score =  147 bits (372), Expect = 2e-35
 Identities = 83/196 (42%), Positives = 115/196 (58%)
 Frame = +1

Query: 91  NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 270
           NRGPAYGLS EV+ K+ ++YD   EQ L +WI     + +G       NF + LKDG +L
Sbjct: 7   NRGPAYGLSAEVKNKLAQKYDHQREQELREWIEGVTGRRIGN------NFMDGLKDGIIL 60

Query: 271 CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 450
           CE IN L P     VKK+  ST  + Q+E I  F++A  +YG+   DIF+  DL+E  N 
Sbjct: 61  CEFINKLQP---GSVKKVNESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNH 117

Query: 451 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 630
             VQ TL+ L  +A  + + +  G      K +++  R F   +L+EG+N+IGLQMGTN+
Sbjct: 118 TQVQSTLLALASMAKTKGNKVNVG-----VKYAEKQERRFEPEKLREGRNIIGLQMGTNK 172

Query: 631 GASQAGMTGYGMPRQI 678
            ASQ GMT YG  R +
Sbjct: 173 FASQQGMTAYGTRRHL 188


>ref|NP_001033268.1| calponin-3 [Bos taurus].
          Length = 329

 Score =  146 bits (368), Expect = 4e-35
 Identities = 85/196 (43%), Positives = 116/196 (59%)
 Frame = +1

Query: 91  NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 270
           N+GP+YGLS EV+ KI  +YD   E+ L  WI       +G       NFQ  LKDG +L
Sbjct: 5   NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGA------NFQLGLKDGIIL 58

Query: 271 CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 450
           CELIN L P     VKK+  S++ + Q+E I  F++A + YG+   DIF+  DL+E  NM
Sbjct: 59  CELINKLQP---GSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNM 115

Query: 451 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 630
             VQ TL+ L GLA  +    F    +   K +++  R F + +L+ G++VIGLQMGTN+
Sbjct: 116 TQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNK 172

Query: 631 GASQAGMTGYGMPRQI 678
            ASQAGMT YG  R +
Sbjct: 173 CASQAGMTAYGTRRHL 188


>ref|NP_001030497.1| calponin-2 [Bos taurus].
          Length = 309

 Score =  134 bits (338), Expect = 1e-31
 Identities = 82/196 (41%), Positives = 114/196 (58%)
 Frame = +1

Query: 91  NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 270
           N+GP+YGLS EV+ +++ +YD   E  L  WI       VG       +FQ  LKDG +L
Sbjct: 7   NKGPSYGLSAEVKNRLQSKYDPQKEAELRSWIEGLTGLSVG------PDFQKGLKDGIIL 60

Query: 271 CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 450
           C L+N L P     V KI  S   + Q+E +S F++A   YG+N  D+F+  DL+E  N+
Sbjct: 61  CTLMNKLQP---GSVPKINRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGNL 117

Query: 451 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 630
             VQ +L+ L G A  +  GL SG  +   K S++  RNF D  ++ G+ VIGLQMGTN+
Sbjct: 118 TQVQVSLLALAGKAKTK--GLQSG-VDIGVKYSEKQERNFDDATMKAGQCVIGLQMGTNK 174

Query: 631 GASQAGMTGYGMPRQI 678
            ASQ+GMT YG  R +
Sbjct: 175 CASQSGMTAYGTRRHL 190


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,669,881
Number of extensions: 1779078
Number of successful extensions: 7321
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 7301
Number of HSP's successfully gapped: 10
Length of query: 429
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 324
Effective length of database: 14,207,134
Effective search space: 4603111416
Effective search space used: 4603111416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012325
         (1288 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003355153.1| PREDICTED: transgelin-2-like isoform 2 [Sus ...   410   e-115
Alignment   gi|XP_003125720.2| PREDICTED: transgelin-2-like isoform 1 [Sus ...   410   e-115
Alignment   gi|XP_003361052.1| PREDICTED: transgelin-3-like isoform 2 [Sus ...   300   2e-81
Alignment   gi|XP_003361051.1| PREDICTED: transgelin-3-like isoform 1 [Sus ...   300   2e-81
Alignment   gi|XP_003357356.1| PREDICTED: transgelin [Sus scrofa].               276   1e-74
Alignment   gi|XP_003129930.1| PREDICTED: transgelin isoform 2 [Sus scrofa].     273   2e-73
Alignment   gi|XP_003129929.1| PREDICTED: transgelin isoform 1 [Sus scrofa].     273   2e-73
Alignment   gi|NP_999043.1| calponin-1 [Sus scrofa].                             147   1e-35
Alignment   gi|XP_003125950.1| PREDICTED: calponin-3 [Sus scrofa].               144   1e-34
Alignment   gi|XP_003354007.1| PREDICTED: calponin-2 isoform 1 [Sus scrofa].     133   2e-31

>ref|XP_003355153.1| PREDICTED: transgelin-2-like isoform 2 [Sus scrofa].
          Length = 199

 Score =  410 bits (1054), Expect = e-115
 Identities = 199/199 (100%), Positives = 199/199 (100%)
 Frame = +1

Query: 85  MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
           MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT
Sbjct: 1   MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 60

Query: 265 VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK 444
           VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK
Sbjct: 61  VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK 120

Query: 445 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT 624
           NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT
Sbjct: 121 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT 180

Query: 625 NRGASQAGMTGYGMPRQIL 681
           NRGASQAGMTGYGMPRQIL
Sbjct: 181 NRGASQAGMTGYGMPRQIL 199


>ref|XP_003125720.2| PREDICTED: transgelin-2-like isoform 1 [Sus scrofa].
          Length = 199

 Score =  410 bits (1054), Expect = e-115
 Identities = 199/199 (100%), Positives = 199/199 (100%)
 Frame = +1

Query: 85  MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
           MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT
Sbjct: 1   MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 60

Query: 265 VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK 444
           VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK
Sbjct: 61  VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK 120

Query: 445 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT 624
           NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT
Sbjct: 121 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT 180

Query: 625 NRGASQAGMTGYGMPRQIL 681
           NRGASQAGMTGYGMPRQIL
Sbjct: 181 NRGASQAGMTGYGMPRQIL 199


>ref|XP_003361052.1| PREDICTED: transgelin-3-like isoform 2 [Sus scrofa].
          Length = 199

 Score =  300 bits (767), Expect = 2e-81
 Identities = 139/199 (69%), Positives = 168/199 (84%)
 Frame = +1

Query: 85  MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
           MANRGP+YGLSREVQ+KIE++YDADLE  L+ WI  QC +D+  P PGR +FQ WL DGT
Sbjct: 1   MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRTHFQKWLMDGT 60

Query: 265 VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK 444
           VLC+LIN LYP GQ P+ KI  S MAFKQMEQISQFL+AAE YG+ TTDIFQTVDLWEGK
Sbjct: 61  VLCKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAEIYGVRTTDIFQTVDLWEGK 120

Query: 445 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT 624
           +MA VQRTLM LG +AV +DDG + G+P+WF +K+++N R FS+ QL++G+NVIGLQMG+
Sbjct: 121 DMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGS 180

Query: 625 NRGASQAGMTGYGMPRQIL 681
           N+GASQAGMTGYGMPRQI+
Sbjct: 181 NKGASQAGMTGYGMPRQIM 199


>ref|XP_003361051.1| PREDICTED: transgelin-3-like isoform 1 [Sus scrofa].
          Length = 199

 Score =  300 bits (767), Expect = 2e-81
 Identities = 139/199 (69%), Positives = 168/199 (84%)
 Frame = +1

Query: 85  MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
           MANRGP+YGLSREVQ+KIE++YDADLE  L+ WI  QC +D+  P PGR +FQ WL DGT
Sbjct: 1   MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRTHFQKWLMDGT 60

Query: 265 VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK 444
           VLC+LIN LYP GQ P+ KI  S MAFKQMEQISQFL+AAE YG+ TTDIFQTVDLWEGK
Sbjct: 61  VLCKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAEIYGVRTTDIFQTVDLWEGK 120

Query: 445 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT 624
           +MA VQRTLM LG +AV +DDG + G+P+WF +K+++N R FS+ QL++G+NVIGLQMG+
Sbjct: 121 DMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGS 180

Query: 625 NRGASQAGMTGYGMPRQIL 681
           N+GASQAGMTGYGMPRQI+
Sbjct: 181 NKGASQAGMTGYGMPRQIM 199


>ref|XP_003357356.1| PREDICTED: transgelin [Sus scrofa].
          Length = 213

 Score =  276 bits (707), Expect = 1e-74
 Identities = 131/204 (64%), Positives = 166/204 (81%), Gaps = 1/204 (0%)
 Frame = +1

Query: 73  LPFGMANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWL 252
           LP  MAN+GP+YG+SREVQ KIEK+YD +LE+ L++WI  QC  DVGRP  GR  FQ WL
Sbjct: 9   LPTNMANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWL 68

Query: 253 KDGTVLCELINGLYPEGQAPVKKIQ-ASTMAFKQMEQISQFLQAAERYGINTTDIFQTVD 429
           K+G +L +L+N LYP+G  PVK  +   +M FKQMEQ++QFL+AAE YG+  TD+FQTVD
Sbjct: 69  KNGVILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVD 128

Query: 430 LWEGKNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIG 609
           L+EGK++A VQRTLM LG LAV ++DG + GDPNWF KK++E+ R F+++QLQEGK+VIG
Sbjct: 129 LFEGKDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIG 188

Query: 610 LQMGTNRGASQAGMTGYGMPRQIL 681
           LQMG+NRGASQAGMTGYG PRQI+
Sbjct: 189 LQMGSNRGASQAGMTGYGRPRQII 212


>ref|XP_003129930.1| PREDICTED: transgelin isoform 2 [Sus scrofa].
          Length = 201

 Score =  273 bits (698), Expect = 2e-73
 Identities = 129/200 (64%), Positives = 164/200 (82%), Gaps = 1/200 (0%)
 Frame = +1

Query: 85  MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
           MAN+GP+YG+SREVQ KIEK+YD +LE+ L++WI  QC  DVGRP  GR  FQ WLK+G 
Sbjct: 1   MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 60

Query: 265 VLCELINGLYPEGQAPVKKIQ-ASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEG 441
           +L +L+N LYP+G  PVK  +   +M FKQMEQ++QFL+AAE YG+  TD+FQTVDL+EG
Sbjct: 61  ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 120

Query: 442 KNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMG 621
           K++A VQRTLM LG LAV ++DG + GDPNWF KK++E+ R F+++QLQEGK+VIGLQMG
Sbjct: 121 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 180

Query: 622 TNRGASQAGMTGYGMPRQIL 681
           +NRGASQAGMTGYG PRQI+
Sbjct: 181 SNRGASQAGMTGYGRPRQII 200


>ref|XP_003129929.1| PREDICTED: transgelin isoform 1 [Sus scrofa].
          Length = 201

 Score =  273 bits (698), Expect = 2e-73
 Identities = 129/200 (64%), Positives = 164/200 (82%), Gaps = 1/200 (0%)
 Frame = +1

Query: 85  MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
           MAN+GP+YG+SREVQ KIEK+YD +LE+ L++WI  QC  DVGRP  GR  FQ WLK+G 
Sbjct: 1   MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 60

Query: 265 VLCELINGLYPEGQAPVKKIQ-ASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEG 441
           +L +L+N LYP+G  PVK  +   +M FKQMEQ++QFL+AAE YG+  TD+FQTVDL+EG
Sbjct: 61  ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 120

Query: 442 KNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMG 621
           K++A VQRTLM LG LAV ++DG + GDPNWF KK++E+ R F+++QLQEGK+VIGLQMG
Sbjct: 121 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 180

Query: 622 TNRGASQAGMTGYGMPRQIL 681
           +NRGASQAGMTGYG PRQI+
Sbjct: 181 SNRGASQAGMTGYGRPRQII 200


>ref|NP_999043.1| calponin-1 [Sus scrofa].
          Length = 297

 Score =  147 bits (372), Expect = 1e-35
 Identities = 83/196 (42%), Positives = 115/196 (58%)
 Frame = +1

Query: 91  NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 270
           NRGPAYGLS EV+ K+ ++YD   EQ L +WI     + +G       NF + LKDG +L
Sbjct: 7   NRGPAYGLSAEVKNKLAQKYDHQQEQELREWIEGVTGRRIGN------NFMDGLKDGIIL 60

Query: 271 CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 450
           CE IN L P     VKK+  ST  + Q+E I  F++A  +YG+   DIF+  DL+E  N 
Sbjct: 61  CEFINKLQP---GSVKKVNESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNH 117

Query: 451 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 630
             VQ TL+ L  +A  + + +  G      K +++  R F   +L+EG+N+IGLQMGTN+
Sbjct: 118 TQVQSTLLALASMAKTKGNKVNVG-----VKYAEKQERKFEPEKLREGRNIIGLQMGTNK 172

Query: 631 GASQAGMTGYGMPRQI 678
            ASQ GMT YG  R +
Sbjct: 173 FASQQGMTAYGTRRHL 188


>ref|XP_003125950.1| PREDICTED: calponin-3 [Sus scrofa].
          Length = 579

 Score =  144 bits (363), Expect = 1e-34
 Identities = 84/196 (42%), Positives = 116/196 (59%)
 Frame = +1

Query: 91  NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 270
           N+GP+YGLS EV+ KI  +YD   E+ L  WI       +G       +FQ  LKDG +L
Sbjct: 255 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGT------SFQLGLKDGIIL 308

Query: 271 CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 450
           CELIN L P     VKK+  S++ + Q+E I  F++A + YG+   DIF+  DL+E  NM
Sbjct: 309 CELINKLQP---GSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNM 365

Query: 451 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 630
             VQ TL+ L GLA  +    F    +   K +++  R F + +L+ G++VIGLQMGTN+
Sbjct: 366 TQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNK 422

Query: 631 GASQAGMTGYGMPRQI 678
            ASQAGMT YG  R +
Sbjct: 423 CASQAGMTAYGTRRHL 438


>ref|XP_003354007.1| PREDICTED: calponin-2 isoform 1 [Sus scrofa].
          Length = 309

 Score =  133 bits (335), Expect = 2e-31
 Identities = 82/196 (41%), Positives = 113/196 (57%)
 Frame = +1

Query: 91  NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 270
           N+GP+YGLS EV+ ++  +YD   E  L  WI       +G       +FQ  LKDG +L
Sbjct: 7   NKGPSYGLSAEVKNRLLSKYDPQKEAELRSWIEGLTGLSIG------PDFQKGLKDGIIL 60

Query: 271 CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 450
           C L+N L P     V KI  S   + Q+E +S F++A   YG+N  D+F+  DL+E  NM
Sbjct: 61  CTLMNKLQP---GSVPKINRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGNM 117

Query: 451 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 630
             VQ +L+ L G A  +  GL S D +   K S++  RNF D  ++ G+ VIGLQMGTN+
Sbjct: 118 TQVQVSLLALAGKAKTK--GLQS-DVDIGVKYSEKQQRNFDDATMKAGQCVIGLQMGTNK 174

Query: 631 GASQAGMTGYGMPRQI 678
            ASQ+GMT YG  R +
Sbjct: 175 CASQSGMTAYGTRRHL 190


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,189,574
Number of extensions: 1176252
Number of successful extensions: 4795
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 4759
Number of HSP's successfully gapped: 13
Length of query: 429
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 327
Effective length of database: 8,804,438
Effective search space: 2879051226
Effective search space used: 2879051226
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012325
         (1288 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_848713.1| transgelin-2 [Mus musculus].                         398   e-111
Alignment   gi|NP_062728.1| transgelin-3 [Mus musculus].                         300   2e-81
Alignment   gi|NP_035656.1| transgelin [Mus musculus].                           277   1e-74
Alignment   gi|NP_034052.3| calponin-1 [Mus musculus].                           147   1e-35
Alignment   gi|NP_082320.1| calponin-3 [Mus musculus].                           145   5e-35
Alignment   gi|NP_031751.1| calponin-2 [Mus musculus].                           134   2e-31

>ref|NP_848713.1| transgelin-2 [Mus musculus].
          Length = 199

 Score =  398 bits (1023), Expect = e-111
 Identities = 192/199 (96%), Positives = 197/199 (98%)
 Frame = +1

Query: 85  MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
           MANRGP+YGLSREVQQKIEKQYDADLEQILIQWITTQCR+DVG+PQPGRENFQ WLKDGT
Sbjct: 1   MANRGPSYGLSREVQQKIEKQYDADLEQILIQWITTQCREDVGQPQPGRENFQKWLKDGT 60

Query: 265 VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK 444
           VLC+LIN LYPEGQAPVKKIQAS+MAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK
Sbjct: 61  VLCKLINSLYPEGQAPVKKIQASSMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK 120

Query: 445 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT 624
           NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT
Sbjct: 121 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT 180

Query: 625 NRGASQAGMTGYGMPRQIL 681
           NRGASQAGMTGYGMPRQIL
Sbjct: 181 NRGASQAGMTGYGMPRQIL 199


>ref|NP_062728.1| transgelin-3 [Mus musculus].
          Length = 199

 Score =  300 bits (767), Expect = 2e-81
 Identities = 139/199 (69%), Positives = 168/199 (84%)
 Frame = +1

Query: 85  MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
           MANRGP+YGLSREVQ+KIE++YDADLE  L+ WI  QC +D+  P PGR +FQ WL DGT
Sbjct: 1   MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRAHFQKWLMDGT 60

Query: 265 VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK 444
           VLC+LIN LYP GQ P+ KI  S MAFKQMEQISQFL+AAE YG+ TTDIFQTVDLWEGK
Sbjct: 61  VLCKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAEVYGVRTTDIFQTVDLWEGK 120

Query: 445 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT 624
           +MA VQRTLM LG +AV +DDG + G+P+WF +K+++N R FS+ QL++G+NVIGLQMG+
Sbjct: 121 DMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGS 180

Query: 625 NRGASQAGMTGYGMPRQIL 681
           N+GASQAGMTGYGMPRQI+
Sbjct: 181 NKGASQAGMTGYGMPRQIM 199


>ref|NP_035656.1| transgelin [Mus musculus].
          Length = 201

 Score =  277 bits (708), Expect = 1e-74
 Identities = 132/200 (66%), Positives = 165/200 (82%), Gaps = 1/200 (0%)
 Frame = +1

Query: 85  MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
           MAN+GP+YG+SREVQ KIEK+YD +LE+ L++WI  QC  DVGRP  GR  FQ WLK+G 
Sbjct: 1   MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGV 60

Query: 265 VLCELINGLYPEGQAPVKKIQ-ASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEG 441
           +L +L+N LYPEG  PVK  +   +M FKQMEQ++QFL+AAE YG+  TD+FQTVDL+EG
Sbjct: 61  ILSKLVNSLYPEGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDLYEG 120

Query: 442 KNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMG 621
           K+MA VQRTLM LG LAV ++DG + GDPNWF KK++E+ R+F+D+QLQEGK+VIGLQMG
Sbjct: 121 KDMAAVQRTLMALGSLAVTKNDGNYRGDPNWFMKKAQEHKRDFTDSQLQEGKHVIGLQMG 180

Query: 622 TNRGASQAGMTGYGMPRQIL 681
           +NRGASQAGMTGYG PRQI+
Sbjct: 181 SNRGASQAGMTGYGRPRQII 200


>ref|NP_034052.3| calponin-1 [Mus musculus].
          Length = 297

 Score =  147 bits (372), Expect = 1e-35
 Identities = 83/196 (42%), Positives = 115/196 (58%)
 Frame = +1

Query: 91  NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 270
           NRGPAYGLS EV+ K+ ++YD   EQ L +WI     + +G       NF + LKDG +L
Sbjct: 7   NRGPAYGLSAEVKNKLAQKYDHQREQELREWIEGVTGRRIGN------NFMDGLKDGIIL 60

Query: 271 CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 450
           CE IN L P     VKK+  ST  + Q+E I  F++A  +YG+   DIF+  DL+E  N 
Sbjct: 61  CEFINKLQP---GSVKKVNESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNH 117

Query: 451 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 630
             VQ TL+ L  +A  + + +  G      K +++  R F   +L+EG+N+IGLQMGTN+
Sbjct: 118 TQVQSTLLALASMAKTKGNKVNVG-----VKYAEKQERRFEPEKLREGRNIIGLQMGTNK 172

Query: 631 GASQAGMTGYGMPRQI 678
            ASQ GMT YG  R +
Sbjct: 173 FASQQGMTAYGTRRHL 188


>ref|NP_082320.1| calponin-3 [Mus musculus].
          Length = 330

 Score =  145 bits (367), Expect = 5e-35
 Identities = 85/196 (43%), Positives = 116/196 (59%)
 Frame = +1

Query: 91  NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 270
           N+GP+YGLS EV+ KI  +YD   E+ L  WI       +G       NFQ  LKDG +L
Sbjct: 5   NKGPSYGLSAEVKNKIASKYDQQAEEDLRNWIEEVTGLGIGT------NFQLGLKDGIIL 58

Query: 271 CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 450
           CELIN L P     VKK+  S++ + Q+E I  F++A + YG+   DIF+  DL+E  NM
Sbjct: 59  CELINKLQP---GSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNM 115

Query: 451 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 630
             VQ TL+ L GLA  +    F    +   K +++  R F + +L+ G++VIGLQMGTN+
Sbjct: 116 TQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNK 172

Query: 631 GASQAGMTGYGMPRQI 678
            ASQAGMT YG  R +
Sbjct: 173 CASQAGMTAYGTRRHL 188


>ref|NP_031751.1| calponin-2 [Mus musculus].
          Length = 305

 Score =  134 bits (336), Expect = 2e-31
 Identities = 82/196 (41%), Positives = 113/196 (57%)
 Frame = +1

Query: 91  NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 270
           N+GP+YGLS EV+ ++  +YD   E  L  WI       +G       +FQ  LKDG +L
Sbjct: 7   NKGPSYGLSAEVKNRLLSKYDPQKEAELRSWIEGLTGLSIG------PDFQKGLKDGVIL 60

Query: 271 CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 450
           C L+N L P     V KI  S   + Q+E +S F++A   YG+N  D+F+  DL+E  NM
Sbjct: 61  CTLMNKLQP---GSVPKINRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGNM 117

Query: 451 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 630
             VQ +L+ L G A  +  GL SG  +   K S++  RNF D  ++ G+ VIGLQMGTN+
Sbjct: 118 TQVQVSLLALAGKAKTK--GLQSG-VDIGVKYSEKQERNFDDATMKAGQCVIGLQMGTNK 174

Query: 631 GASQAGMTGYGMPRQI 678
            ASQ+GMT YG  R +
Sbjct: 175 CASQSGMTAYGTRRHL 190


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 47,514,229
Number of extensions: 1449344
Number of successful extensions: 5404
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5381
Number of HSP's successfully gapped: 6
Length of query: 429
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 325
Effective length of database: 12,493,815
Effective search space: 4060489875
Effective search space used: 4060489875
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012325
         (1288 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_003555.1| transgelin-2 [Homo sapiens].                         408   e-114
Alignment   gi|NP_037391.2| transgelin-3 [Homo sapiens].                         300   1e-81
Alignment   gi|NP_001008274.1| transgelin-3 [Homo sapiens].                      300   1e-81
Alignment   gi|NP_001008273.1| transgelin-3 [Homo sapiens].                      300   1e-81
Alignment   gi|NP_001001522.1| transgelin [Homo sapiens].                        273   3e-73
Alignment   gi|NP_003177.2| transgelin [Homo sapiens].                           273   3e-73
Alignment   gi|NP_001290.2| calponin-1 [Homo sapiens].                           148   1e-35
Alignment   gi|NP_001830.1| calponin-3 [Homo sapiens].                           146   5e-35
Alignment   gi|NP_004359.1| calponin-2 isoform a [Homo sapiens].                 135   8e-32
Alignment   gi|NP_958434.1| calponin-2 isoform b [Homo sapiens].                 114   3e-25

>ref|NP_003555.1| transgelin-2 [Homo sapiens].
          Length = 199

 Score =  408 bits (1048), Expect = e-114
 Identities = 198/199 (99%), Positives = 198/199 (99%)
 Frame = +1

Query: 85  MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
           MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT
Sbjct: 1   MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 60

Query: 265 VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK 444
           VLCELIN LYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK
Sbjct: 61  VLCELINALYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK 120

Query: 445 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT 624
           NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT
Sbjct: 121 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT 180

Query: 625 NRGASQAGMTGYGMPRQIL 681
           NRGASQAGMTGYGMPRQIL
Sbjct: 181 NRGASQAGMTGYGMPRQIL 199


>ref|NP_037391.2| transgelin-3 [Homo sapiens].
          Length = 199

 Score =  300 bits (769), Expect = 1e-81
 Identities = 139/199 (69%), Positives = 168/199 (84%)
 Frame = +1

Query: 85  MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
           MANRGP+YGLSREVQ+KIE++YDADLE  L+ WI  QC +D+  P PGR +FQ WL DGT
Sbjct: 1   MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRAHFQKWLMDGT 60

Query: 265 VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK 444
           VLC+LIN LYP GQ P+ KI  S MAFKQMEQISQFL+AAE YG+ TTDIFQTVDLWEGK
Sbjct: 61  VLCKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAETYGVRTTDIFQTVDLWEGK 120

Query: 445 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT 624
           +MA VQRTLM LG +AV +DDG + G+P+WF +K+++N R FS+ QL++G+NVIGLQMG+
Sbjct: 121 DMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGS 180

Query: 625 NRGASQAGMTGYGMPRQIL 681
           N+GASQAGMTGYGMPRQI+
Sbjct: 181 NKGASQAGMTGYGMPRQIM 199


>ref|NP_001008274.1| transgelin-3 [Homo sapiens].
          Length = 199

 Score =  300 bits (769), Expect = 1e-81
 Identities = 139/199 (69%), Positives = 168/199 (84%)
 Frame = +1

Query: 85  MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
           MANRGP+YGLSREVQ+KIE++YDADLE  L+ WI  QC +D+  P PGR +FQ WL DGT
Sbjct: 1   MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRAHFQKWLMDGT 60

Query: 265 VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK 444
           VLC+LIN LYP GQ P+ KI  S MAFKQMEQISQFL+AAE YG+ TTDIFQTVDLWEGK
Sbjct: 61  VLCKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAETYGVRTTDIFQTVDLWEGK 120

Query: 445 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT 624
           +MA VQRTLM LG +AV +DDG + G+P+WF +K+++N R FS+ QL++G+NVIGLQMG+
Sbjct: 121 DMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGS 180

Query: 625 NRGASQAGMTGYGMPRQIL 681
           N+GASQAGMTGYGMPRQI+
Sbjct: 181 NKGASQAGMTGYGMPRQIM 199


>ref|NP_001008273.1| transgelin-3 [Homo sapiens].
          Length = 199

 Score =  300 bits (769), Expect = 1e-81
 Identities = 139/199 (69%), Positives = 168/199 (84%)
 Frame = +1

Query: 85  MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
           MANRGP+YGLSREVQ+KIE++YDADLE  L+ WI  QC +D+  P PGR +FQ WL DGT
Sbjct: 1   MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRAHFQKWLMDGT 60

Query: 265 VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK 444
           VLC+LIN LYP GQ P+ KI  S MAFKQMEQISQFL+AAE YG+ TTDIFQTVDLWEGK
Sbjct: 61  VLCKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAETYGVRTTDIFQTVDLWEGK 120

Query: 445 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT 624
           +MA VQRTLM LG +AV +DDG + G+P+WF +K+++N R FS+ QL++G+NVIGLQMG+
Sbjct: 121 DMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGS 180

Query: 625 NRGASQAGMTGYGMPRQIL 681
           N+GASQAGMTGYGMPRQI+
Sbjct: 181 NKGASQAGMTGYGMPRQIM 199


>ref|NP_001001522.1| transgelin [Homo sapiens].
          Length = 201

 Score =  273 bits (698), Expect = 3e-73
 Identities = 130/200 (65%), Positives = 164/200 (82%), Gaps = 1/200 (0%)
 Frame = +1

Query: 85  MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
           MAN+GP+YG+SREVQ KIEK+YD +LE+ L++WI  QC  DVGRP  GR  FQ WLK+G 
Sbjct: 1   MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 60

Query: 265 VLCELINGLYPEGQAPVKKIQ-ASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEG 441
           +L +L+N LYP+G  PVK  +   +M FKQMEQ++QFL+AAE YG+  TD+FQTVDL+EG
Sbjct: 61  ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDLFEG 120

Query: 442 KNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMG 621
           K+MA VQRTLM LG LAV ++DG + GDPNWF KK++E+ R F+++QLQEGK+VIGLQMG
Sbjct: 121 KDMAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 180

Query: 622 TNRGASQAGMTGYGMPRQIL 681
           +NRGASQAGMTGYG PRQI+
Sbjct: 181 SNRGASQAGMTGYGRPRQII 200


>ref|NP_003177.2| transgelin [Homo sapiens].
          Length = 201

 Score =  273 bits (698), Expect = 3e-73
 Identities = 130/200 (65%), Positives = 164/200 (82%), Gaps = 1/200 (0%)
 Frame = +1

Query: 85  MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
           MAN+GP+YG+SREVQ KIEK+YD +LE+ L++WI  QC  DVGRP  GR  FQ WLK+G 
Sbjct: 1   MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 60

Query: 265 VLCELINGLYPEGQAPVKKIQ-ASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEG 441
           +L +L+N LYP+G  PVK  +   +M FKQMEQ++QFL+AAE YG+  TD+FQTVDL+EG
Sbjct: 61  ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDLFEG 120

Query: 442 KNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMG 621
           K+MA VQRTLM LG LAV ++DG + GDPNWF KK++E+ R F+++QLQEGK+VIGLQMG
Sbjct: 121 KDMAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 180

Query: 622 TNRGASQAGMTGYGMPRQIL 681
           +NRGASQAGMTGYG PRQI+
Sbjct: 181 SNRGASQAGMTGYGRPRQII 200


>ref|NP_001290.2| calponin-1 [Homo sapiens].
          Length = 297

 Score =  148 bits (373), Expect = 1e-35
 Identities = 84/196 (42%), Positives = 115/196 (58%)
 Frame = +1

Query: 91  NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 270
           NRGPAYGLS EV+ K+ ++YD   EQ L +WI     + +G       NF + LKDG +L
Sbjct: 7   NRGPAYGLSAEVKNKLAQKYDHQREQELREWIEGVTGRRIGN------NFMDGLKDGIIL 60

Query: 271 CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 450
           CE IN L P     VKKI  ST  + Q+E I  F++A  +YG+   DIF+  DL+E  N 
Sbjct: 61  CEFINKLQP---GSVKKINESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNH 117

Query: 451 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 630
             VQ TL+ L  +A  + + +  G      K +++  R F   +L+EG+N+IGLQMGTN+
Sbjct: 118 TQVQSTLLALASMAKTKGNKVNVG-----VKYAEKQERKFEPGKLREGRNIIGLQMGTNK 172

Query: 631 GASQAGMTGYGMPRQI 678
            ASQ GMT YG  R +
Sbjct: 173 FASQQGMTAYGTRRHL 188


>ref|NP_001830.1| calponin-3 [Homo sapiens].
          Length = 329

 Score =  146 bits (368), Expect = 5e-35
 Identities = 85/196 (43%), Positives = 116/196 (59%)
 Frame = +1

Query: 91  NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 270
           N+GP+YGLS EV+ KI  +YD   E+ L  WI       +G       NFQ  LKDG +L
Sbjct: 5   NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIG------PNFQLGLKDGIIL 58

Query: 271 CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 450
           CELIN L P     VKK+  S++ + Q+E I  F++A + YG+   DIF+  DL+E  NM
Sbjct: 59  CELINKLQP---GSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNM 115

Query: 451 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 630
             VQ TL+ L GLA  +    F    +   K +++  R F + +L+ G++VIGLQMGTN+
Sbjct: 116 TQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNK 172

Query: 631 GASQAGMTGYGMPRQI 678
            ASQAGMT YG  R +
Sbjct: 173 CASQAGMTAYGTRRHL 188


>ref|NP_004359.1| calponin-2 isoform a [Homo sapiens].
          Length = 309

 Score =  135 bits (340), Expect = 8e-32
 Identities = 83/196 (42%), Positives = 114/196 (58%)
 Frame = +1

Query: 91  NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 270
           N+GP+YGLS EV+ ++  +YD   E  L  WI       +G       +FQ  LKDGT+L
Sbjct: 7   NKGPSYGLSAEVKNRLLSKYDPQKEAELRTWIEGLTGLSIG------PDFQKGLKDGTIL 60

Query: 271 CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 450
           C L+N L P     V KI  S   + Q+E +S F++A   YG+N  D+F+  DL+E  NM
Sbjct: 61  CTLMNKLQP---GSVPKINRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGNM 117

Query: 451 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 630
             VQ +L+ L G A  +  GL SG  +   K S++  RNF D  ++ G+ VIGLQMGTN+
Sbjct: 118 TQVQVSLLALAGKAKTK--GLQSG-VDIGVKYSEKQERNFDDATMKAGQCVIGLQMGTNK 174

Query: 631 GASQAGMTGYGMPRQI 678
            ASQ+GMT YG  R +
Sbjct: 175 CASQSGMTAYGTRRHL 190


>ref|NP_958434.1| calponin-2 isoform b [Homo sapiens].
          Length = 270

 Score =  114 bits (284), Expect = 3e-25
 Identities = 73/196 (37%), Positives = 102/196 (52%)
 Frame = +1

Query: 91  NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 270
           N+GP+YGLS EV+ ++  +YD   E  L  WI       +G       +FQ  LKDGT+L
Sbjct: 7   NKGPSYGLSAEVKNRLLSKYDPQKEAELRTWIEGLTGLSIG------PDFQKGLKDGTIL 60

Query: 271 CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 450
           C L+N L P     V KI  S   + Q+E +S F++A   YG+N  D+F+  DL+E  NM
Sbjct: 61  CTLMNKLQP---GSVPKINRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGNM 117

Query: 451 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 630
             VQ +L+ L G          SG   +  ++   +P+N     +    + I LQMGTN+
Sbjct: 118 TQVQVSLLALAGKMGTNKCASQSGMTAYGTRRHLYDPKNHILPPMDH--STISLQMGTNK 175

Query: 631 GASQAGMTGYGMPRQI 678
            ASQ GMT  G  R I
Sbjct: 176 CASQVGMTAPGTRRHI 191


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 56,631,930
Number of extensions: 1761780
Number of successful extensions: 6722
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 6685
Number of HSP's successfully gapped: 10
Length of query: 429
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 324
Effective length of database: 14,835,944
Effective search space: 4806845856
Effective search space used: 4806845856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012325
         (1288 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr13                                                        1520   0.0  
Sscrofa_Chr04                                                        1197   0.0  

>Sscrofa_Chr13 
||          Length = 218635234

 Score = 1520 bits (767), Expect = 0.0
 Identities = 1119/1244 (89%), Gaps = 7/1244 (0%)
 Strand = Plus / Plus

                                                                            
Query: 14       cagccccagtcttaagtgcgcaattctcctgcctgagtgaaagctccacacagccaccac 73
                |||||||||||||||||| |||  ||||||||||||||||||||||  ||||||||||||
Sbjct: 23611507 cagccccagtcttaagtgtgcagctctcctgcctgagtgaaagctctccacagccaccac 23611566

                                                                            
Query: 74       tgcccttcggaatggccaacaggggacctgcctatggtctgagccgggaggtgcagcaga 133
                  ||||| |||||||||| |||||||||||||||  ||||| ||||||||||||||||||
Sbjct: 23611567 caccctttggaatggccaccaggggacctgcctaccgtctgggccgggaggtgcagcaga 23611626

                                                                            
Query: 134      agattgagaaacaatacgatgcagatctggagcagatcctgatccagtggatcactaccc 193
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23611627 agattgagaaacaatacgatgcagatctggagcagatcctgatccagtggatcactaccc 23611686

                                                                            
Query: 194      agtgccgcaaggatgtgggccggccccagcctgggcgcgaaaactttcagaactggctca 253
                ||||| |||||||||||||| |||  |||||||||| ||| |||||||||||||||||||
Sbjct: 23611687 agtgctgcaaggatgtgggctggcttcagcctgggcacgagaactttcagaactggctca 23611746

                                                                            
Query: 254      aggatggcacggtgctgtgtgagcttattaatgggctgtaccccgaggggcaggcccccg 313
                | |||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
Sbjct: 23611747 aagatggcacggtgctgtgtgagcttattaatgggctgtaccccaaagggcaggccccag 23611806

                                                                            
Query: 314      tgaagaagatccaggcctccaccatggccttcaagcagatggaacagatctcccagttcc 373
                ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 23611807 tgaagaagatccaggcctccaccatggccttcaagcagatggagcagatctccccgttcc 23611866

                                                                            
Query: 374      tgcaagcagccgagcgctacggcatcaacaccaccgacatcttccagactgtggacctct 433
                |||||||||| ||| |||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 23611867 tgcaagcagctgagtgctacggcatcaacactactgacatcttccagactgtggacctct 23611926

                                                                            
Query: 434      gggaaggaaagaacatggcctgtgtgcagcggacgctgatgaacctgggcgggctagcgg 493
                |||||||||||||||||||||||||||||| |||||||||||||||||| ||||| | ||
Sbjct: 23611927 gggaaggaaagaacatggcctgtgtgcagcagacgctgatgaacctgggtgggctggtgg 23611986

                                                                            
Query: 494      tagcccgggatgatgggctcttttccggggatcccaactggtttcccaagaaatct-aag 552
                ||||| ||||| |||||||||| ||| |||||||||   ||||||||||||||| | || 
Sbjct: 23611987 tagcctgggattatgggctcttctcctgggatcccagtgggtttcccaagaaatgtaaat 23612046

                                                                            
Query: 553      gaaaacccccggaacttctccgacaaccagctgcaggagggcaagaatgtgatcgggttg 612
                |||||||||||||||||||  || ||||||||||||||||||||||||||||||||||| 
Sbjct: 23612047 gaaaacccccggaacttctatgataaccagctgcaggagggcaagaatgtgatcgggtta 23612106

                                                                            
Query: 613      cagatggggaccaaccgcggggcatcccaggcaggcatgaccggctatggcatgccacgc 672
                ||||||||||||||||| ||||||||| |||||||||||||||||||||| ||| |||||
Sbjct: 23612107 cagatggggaccaaccgtggggcatcctaggcaggcatgaccggctatgggatgtcacgc 23612166

                                                                            
Query: 673      cagatcctctgatcctgcccacagccctgcccccgcccgccgtgaatnnnnnnnnnnnnn 732
                |||||||||||||||||||| |||||||||||| ||| |||||||||             
Sbjct: 23612167 cagatcctctgatcctgcccgcagccctgcccctgcctgccgtgaatggttgatatgtat 23612226

                                                                            
Query: 733      nnnnnnnnnnncaatgacattccccgagagccccgggagctctcacactcccgcctgcca 792
                           |||||||||||||| |||||||  |||||||||| |||||| |||||||
Sbjct: 23612227 atatattttagcaatgacattccccaagagccctaggagctctcatactccctcctgcca 23612286

                                                                            
Query: 793      gggtgggggcctggcctgtctcctcttggggtgcccggcggtggcctctcccctgtgctt 852
                |||||||| | || |||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 23612287 gggtggggacatgccctgtctcctcttggggtgcccagcagtggcctctcccctgtgctt 23612346

                                                                            
Query: 853      tactaatacattcctttctccagacccaccagaactggaccaatggacttttttccctgg 912
                |||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||
Sbjct: 23612347 tactaatacattcctttctccagacccaccagaactggaccaactgacctttttccctgg 23612406

                                                                            
Query: 913      gaccaaaactgaggggtggg----gggttgct--cgccccatgcccctctccccaccaag 966
                ||||||||||||||||||||    |||  |||  | ||| ||||||||||||||||||||
Sbjct: 23612407 gaccaaaactgaggggtgggggttggggggctgccccccaatgcccctctccccaccaag 23612466

                                                                            
Query: 967      cctcttctctttttctcgggcttnnnnnnnaccaccccagccccaataacccgggctctg 1026
                ||||||||||||||||| ||| |       ||  |||||||||||| |||||||||||| 
Sbjct: 23612467 cctcttctctttttctcaggcctccccaccacagccccagccccaacaacccgggctcta 23612526

                                                                            
Query: 1027     tgccttagtctgttccttggctaggggtcaaggatgctgcctaatggccctctccccaca 1086
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 23612527 cgccttagtctgttccttggctaggggtcaaggatgctgcctaatggccctctccccgca 23612586

                                                                            
Query: 1087     agtatgcctcgcccgcagccgtggctgcagggacttaatctctagggaggggctgtggca 1146
                |||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||| 
Sbjct: 23612587 agtatgcctcacccgcagccatggctgcagggacttagtctctagggaggggctgtggcg 23612646

                                                                            
Query: 1147     gctgccaccccagcccagctggactgcactcaccacagttctggggcagcttgccccgag 1206
                ||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||| 
Sbjct: 23612647 gctgccaccccagcccagctgaactgcactcactacagttctggggcagcctgccccgac 23612706

                                                            
Query: 1207     agaggtcctctggcttctcattttccattcctctcgcccagcta 1250
                ||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 23612707 agaggccctctggcttctcattttccattcctctcgcccggcta 23612750



 Score = 1518 bits (766), Expect = 0.0
 Identities = 1117/1243 (89%), Gaps = 6/1243 (0%)
 Strand = Plus / Plus

                                                                            
Query: 14       cagccccagtcttaagtgcgcaattctcctgcctgagtgaaagctccacacagccaccac 73
                |||||||||||||||||| |||  ||||||||||| ||||||| ||  ||||||||||||
Sbjct: 23880228 cagccccagtcttaagtgtgcagctctcctgcctgcgtgaaagttctccacagccaccac 23880287

                                                                            
Query: 74       tgcccttcggaatggccaacaggggacctgcctatggtctgagccgggaggtgcagcaga 133
                  ||||| |||||||||| |||||||||||||||  ||||| ||||||||||||||||||
Sbjct: 23880288 caccctttggaatggccaccaggggacctgcctaccgtctgggccgggaggtgcagcaga 23880347

                                                                            
Query: 134      agattgagaaacaatacgatgcagatctggagcagatcctgatccagtggatcactaccc 193
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23880348 agattgagaaacaatacgatgcagatctggagcagatcctgatccagtggatcactaccc 23880407

                                                                            
Query: 194      agtgccgcaaggatgtgggccggccccagcctgggcgcgaaaactttcagaactggctca 253
                ||||| |||||||||||||| |||  |||||||||| ||| |||||||||||||||||||
Sbjct: 23880408 agtgctgcaaggatgtgggctggcttcagcctgggcacgagaactttcagaactggctca 23880467

                                                                            
Query: 254      aggatggcacggtgctgtgtgagcttattaatgggctgtaccccgaggggcaggcccccg 313
                | |||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
Sbjct: 23880468 aagatggcacggtgctgtgtgagcttattaatgggctgtaccccaaagggcaggccccag 23880527

                                                                            
Query: 314      tgaagaagatccaggcctccaccatggccttcaagcagatggaacagatctcccagttcc 373
                ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 23880528 tgaagaagatccaggcctccaccatggccttcaagcagatggagcagatctccccgttcc 23880587

                                                                            
Query: 374      tgcaagcagccgagcgctacggcatcaacaccaccgacatcttccagactgtggacctct 433
                |||||||||| ||| |||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 23880588 tgcaagcagctgagtgctacggcatcaacactactgacatcttccagactgtggacctct 23880647

                                                                            
Query: 434      gggaaggaaagaacatggcctgtgtgcagcggacgctgatgaacctgggcgggctagcgg 493
                |||||||||||||||||||||||||||||| || ||||||||||||||| ||||| ||||
Sbjct: 23880648 gggaaggaaagaacatggcctgtgtgcagcagatgctgatgaacctgggtgggctggcgg 23880707

                                                                            
Query: 494      tagcccgggatgatgggctcttttccggggatcccaactggtttcccaagaaatctaagg 553
                ||||| ||||| |||||||||| ||| |||||||||   ||||||||||||||| |||||
Sbjct: 23880708 tagcctgggattatgggctcttctcccgggatcccagtgggtttcccaagaaatgtaagg 23880767

                                                                            
Query: 554      aaaacccccggaacttctccgacaaccagctgcaggagggcaagaatgtgatcgggttgc 613
                ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
Sbjct: 23880768 aaaacccccggaacttctctgataaccagctgcaggagggcaagaatgtgatcgggttac 23880827

                                                                            
Query: 614      agatggggaccaaccgcggggcatcccaggcaggcatgaccggctatggcatgccacgcc 673
                |||||||||||||||| ||||||||| |||||||||||||||||||||| ||| ||| ||
Sbjct: 23880828 agatggggaccaaccgtggggcatcctaggcaggcatgaccggctatgggatgtcacacc 23880887

                                                                            
Query: 674      agatcctctgatcctgcccacagccctgcccccgcccgccgtgaatnnnnnnnnnnnnnn 733
                ||||||||||||||||||| |||||||||||| ||| |||||||||              
Sbjct: 23880888 agatcctctgatcctgcccgcagccctgcccctgcctgccgtgaatggttgatatgtata 23880947

                                                                            
Query: 734      nnnnnnnnnncaatgacattccccgagagccccgggagctctcacactcccgcctgccag 793
                          |||||||||||||| |||||||  |||||||||| |||||| |||| |||
Sbjct: 23880948 tatattttagcaatgacattccccaagagccctaggagctctcatactccctcctggcag 23881007

                                                                            
Query: 794      ggtgggggcctggcctgtctcctcttggggtgcccggcggtggcctctcccctgtgcttt 853
                ||||||| |||| ||||||||||||||| |||||| || |||||||||||||||||||||
Sbjct: 23881008 ggtggggacctgccctgtctcctcttggtgtgcccagcagtggcctctcccctgtgcttt 23881067

                                                                            
Query: 854      actaatacattcctttctccagacccaccagaactggaccaatggacttttttccctggg 913
                ||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||
Sbjct: 23881068 actaatacattcctttctccagacccaccagaactggaccaactgacctttttccctggg 23881127

                                                                            
Query: 914      accaaaactgaggggtggg----gggttgct--cgccccatgcccctctccccaccaagc 967
                |||||||||||||||||||    |||  |||  | ||| |||||||||||||||||||||
Sbjct: 23881128 accaaaactgaggggtgggggttggggggctgccccccaatgcccctctccccaccaagc 23881187

                                                                            
Query: 968      ctcttctctttttctcgggcttnnnnnnnaccaccccagccccaataacccgggctctgt 1027
                |||||||||||||||| ||| |       ||  |||||||||||| ||||||||||||  
Sbjct: 23881188 ctcttctctttttctcaggcctcctcaccacagccccagccccaacaacccgggctctac 23881247

                                                                            
Query: 1028     gccttagtctgttccttggctaggggtcaaggatgctgcctaatggccctctccccacaa 1087
                |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 23881248 gccttagtctgttcctgggctaggggtcaaggatgctgcctaatggccctctccccgcaa 23881307

                                                                            
Query: 1088     gtatgcctcgcccgcagccgtggctgcagggacttaatctctagggaggggctgtggcag 1147
                ||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||| |
Sbjct: 23881308 gtatgcctcacccgcagccatggctgcagggacttagtctctagggaggggctgtggcgg 23881367

                                                                            
Query: 1148     ctgccaccccagcccagctggactgcactcaccacagttctggggcagcttgccccgaga 1207
                |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
Sbjct: 23881368 ctgccaccccagcccagctggactgcactcactacagttctggggcagcctgccccgaca 23881427

                                                           
Query: 1208     gaggtcctctggcttctcattttccattcctctcgcccagcta 1250
                |||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 23881428 gaggccctctggcttctcattttccattcctctcgcccggcta 23881470


>Sscrofa_Chr04 
||          Length = 143465943

 Score = 1197 bits (604), Expect = 0.0
 Identities = 679/713 (95%), Gaps = 1/713 (0%)
 Strand = Plus / Minus

                                                                            
Query: 538      cccaagaaatctaaggaaaacccccggaacttctccgacaaccagctgcaggagggcaag 597
                |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98616456 cccaggaaatctaaggaaaacccccggaacttctccgacaaccagctgcaggagggcaag 98616397

                                                                            
Query: 598      aatgtgatcgggttgcagatggggaccaaccgcggggcatcccaggcaggcatgaccggc 657
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98616396 aatgtgatcgggttgcagatggggaccaaccgcggggcatcccaggcaggcatgaccggc 98616337

                                                                            
Query: 658      tatggcatgccacgccagatcctctgatcctgcccacagccctgcccccgcccgccgtga 717
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98616336 tatggcatgccacgccagatcctctgatcctgcccacagccctgcccccgcccgccgtga 98616277

                                                                            
Query: 718      atnnnnnnnnnnnnnnnnnnnnnnnncaatgacattccccgagagccccgggagctctca 777
                ||                        ||||||||||||||||||||||||||||||||||
Sbjct: 98616276 atggttaatatatatatatattttagcaatgacattccccgagagccccgggagctctca 98616217

                                                                            
Query: 778      cactcccgcctgccagggtgggggcctggcctgtctcctcttggggtgcccggcggtggc 837
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98616216 cactcccgcctgccagggtgggggcctggcctgtctcctcttggggtgcccggcggtggc 98616157

                                                                            
Query: 838      ctctcccctgtgctttactaatacattcctttctccagacccaccagaactggaccaatg 897
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98616156 ctctcccctgtgctttactaatacattcctttctccagacccaccagaactggaccaatg 98616097

                                                                            
Query: 898      gacttttttccctgggaccaaaactgaggggtggggggttgctcgccccatgcccctctc 957
                ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 98616096 gacttttttccctgggaccaaaactgaggggtggggg-ttgctcgccccatgcccctctc 98616038

                                                                            
Query: 958      cccaccaagcctcttctctttttctcgggcttnnnnnnnaccaccccagccccaataacc 1017
                ||| ||||||||||||||||||||||||||||       |||||||||||||||||||||
Sbjct: 98616037 cccgccaagcctcttctctttttctcgggcttcccccccaccaccccagccccaataacc 98615978

                                                                            
Query: 1018     cgggctctgtgccttagtctgttccttggctaggggtcaaggatgctgcctaatggccct 1077
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98615977 cgggctctgtgccttagtctgttccttggctaggggtcaaggatgctgcctaatggccct 98615918

                                                                            
Query: 1078     ctccccacaagtatgcctcgcccgcagccgtggctgcagggacttaatctctagggaggg 1137
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98615917 ctccccacaagtatgcctcgcccgcagccgtggctgcagggacttaatctctagggaggg 98615858

                                                                            
Query: 1138     gctgtggcagctgccaccccagcccagctggactgcactcaccacagttctggggcagct 1197
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98615857 gctgtggcagctgccaccccagcccagctggactgcactcaccacagttctggggcagct 98615798

                                                                     
Query: 1198     tgccccgagagaggtcctctggcttctcattttccattcctctcgcccagcta 1250
                |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98615797 tgccccgagagaggtcctctggcttctcattttccattcctctcgcccagcta 98615745



 Score =  414 bits (209), Expect = e-113
 Identities = 212/213 (99%)
 Strand = Plus / Minus

                                                                            
Query: 55       agctccacacagccaccactgcccttcggaatggccaacaggggacctgcctatggtctg 114
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98618236 agctccacacagccaccactgcccttcggaatggccaacaggggacctgcctatggtctg 98618177

                                                                            
Query: 115      agccgggaggtgcagcagaagattgagaaacaatacgatgcagatctggagcagatcctg 174
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98618176 agccgggaggtgcagcagaagattgagaaacaatacgatgcagatctggagcagatcctg 98618117

                                                                            
Query: 175      atccagtggatcactacccagtgccgcaaggatgtgggccggccccagcctgggcgcgaa 234
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98618116 atccagtggatcactacccagtgccgcaaggatgtgggccggccccagcctgggcgcgaa 98618057

                                                 
Query: 235      aactttcagaactggctcaaggatggcacggtg 267
                ||||||||||||||||||||||| |||||||||
Sbjct: 98618056 aactttcagaactggctcaaggacggcacggtg 98618024



 Score =  335 bits (169), Expect = 4e-89
 Identities = 175/177 (98%)
 Strand = Plus / Minus

                                                                            
Query: 264      ggtgctgtgtgagcttattaatgggctgtaccccgaggggcaggcccccgtgaagaagat 323
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98617569 ggtgctgtgtgagcttattaatgggctgtaccccgaggggcaggcccccgtgaagaagat 98617510

                                                                            
Query: 324      ccaggcctccaccatggccttcaagcagatggaacagatctcccagttcctgcaagcagc 383
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98617509 ccaggcctccaccatggccttcaagcagatggaacagatctcccagttcctgcaagcagc 98617450

                                                                         
Query: 384      cgagcgctacggcatcaacaccaccgacatcttccagactgtggacctctgggaagg 440
                ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 98617449 cgagcgctatggcatcaacaccactgacatcttccagactgtggacctctgggaagg 98617393



 Score =  210 bits (106), Expect = 1e-51
 Identities = 106/106 (100%)
 Strand = Plus / Minus

                                                                            
Query: 438      aggaaagaacatggcctgtgtgcagcggacgctgatgaacctgggcgggctagcggtagc 497
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98617099 aggaaagaacatggcctgtgtgcagcggacgctgatgaacctgggcgggctagcggtagc 98617040

                                                              
Query: 498      ccgggatgatgggctcttttccggggatcccaactggtttcccaag 543
                ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98617039 ccgggatgatgggctcttttccggggatcccaactggtttcccaag 98616994



 Score =  105 bits (53), Expect = 6e-20
 Identities = 53/53 (100%)
 Strand = Plus / Minus

                                                                     
Query: 4        attcgcgcggcagccccagtcttaagtgcgcaattctcctgcctgagtgaaag 56
                |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98623859 attcgcgcggcagccccagtcttaagtgcgcaattctcctgcctgagtgaaag 98623807


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,507,618
Number of extensions: 406
Number of successful extensions: 406
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 403
Number of HSP's successfully gapped: 14
Length of query: 1288
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1267
Effective length of database: 2,808,413,156
Effective search space: 3558259468652
Effective search space used: 3558259468652
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)