Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012325
(1288 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852741.1| PREDICTED: similar to transgelin 2 [Canis famil... 426 e-119
Alignment gi|XP_535738.1| PREDICTED: similar to neuronal protein [Canis f... 300 2e-81
Alignment gi|XP_536561.2| PREDICTED: similar to transgelin isoform 1 [Can... 274 2e-73
Alignment gi|XP_861115.1| PREDICTED: similar to transgelin isoform 3 [Can... 262 5e-70
Alignment gi|XP_861087.1| PREDICTED: similar to transgelin isoform 2 [Can... 262 5e-70
Alignment gi|XP_867647.1| PREDICTED: similar to calponin 1, basic, smooth... 147 2e-35
Alignment gi|XP_542053.1| PREDICTED: similar to calponin 1, basic, smooth... 147 2e-35
Alignment gi|XP_854646.1| PREDICTED: similar to calponin 2 isoform a isof... 132 5e-31
Alignment gi|XP_537063.2| PREDICTED: similar to calponin 3 [Canis familia... 126 5e-29
Alignment gi|XP_868614.1| PREDICTED: similar to calponin 2 isoform a isof... 125 9e-29
>ref|XP_852741.1| PREDICTED: similar to transgelin 2 [Canis familiaris].
Length = 271
Score = 426 bits (1096), Expect = e-119
Identities = 206/206 (100%), Positives = 206/206 (100%)
Frame = +1
Query: 64 QPPLPFGMANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQ 243
QPPLPFGMANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQ
Sbjct: 66 QPPLPFGMANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQ 125
Query: 244 NWLKDGTVLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQT 423
NWLKDGTVLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQT
Sbjct: 126 NWLKDGTVLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQT 185
Query: 424 VDLWEGKNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNV 603
VDLWEGKNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNV
Sbjct: 186 VDLWEGKNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNV 245
Query: 604 IGLQMGTNRGASQAGMTGYGMPRQIL 681
IGLQMGTNRGASQAGMTGYGMPRQIL
Sbjct: 246 IGLQMGTNRGASQAGMTGYGMPRQIL 271
>ref|XP_535738.1| PREDICTED: similar to neuronal protein [Canis familiaris].
Length = 199
Score = 300 bits (769), Expect = 2e-81
Identities = 139/199 (69%), Positives = 168/199 (84%)
Frame = +1
Query: 85 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
MANRGP+YGLSREVQ+KIE++YDADLE L+ WI QC +D+ P PGR +FQ WL DGT
Sbjct: 1 MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIAHPPPGRAHFQQWLMDGT 60
Query: 265 VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK 444
VLC+LIN LYP GQ P+ KI S MAFKQMEQISQFL+AAE YG+ TTDIFQTVDLWEGK
Sbjct: 61 VLCKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAEIYGVRTTDIFQTVDLWEGK 120
Query: 445 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT 624
+MA VQRTLM LG +AV +DDG + G+P+WF +K+++N R FS+ QL++G+NVIGLQMG+
Sbjct: 121 DMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGS 180
Query: 625 NRGASQAGMTGYGMPRQIL 681
N+GASQAGMTGYGMPRQI+
Sbjct: 181 NKGASQAGMTGYGMPRQIM 199
>ref|XP_536561.2| PREDICTED: similar to transgelin isoform 1 [Canis familiaris].
Length = 201
Score = 274 bits (700), Expect = 2e-73
Identities = 129/200 (64%), Positives = 164/200 (82%), Gaps = 1/200 (0%)
Frame = +1
Query: 85 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
MAN+GP+YG+SREVQ KIEK+YD +LE+ L++WI QC DVGRP GR FQ WLK+G
Sbjct: 1 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIVMQCGSDVGRPDRGRLGFQVWLKNGV 60
Query: 265 VLCELINGLYPEGQAPVKKIQ-ASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEG 441
+L +L+N LYP+G PVK + +M FKQMEQ++QFL+AAE YG+ TD+FQTVDL+EG
Sbjct: 61 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLYEG 120
Query: 442 KNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMG 621
K++A VQRTLM LG LAV ++DG + GDPNWF KK++E+ R F+++QLQEGK+VIGLQMG
Sbjct: 121 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 180
Query: 622 TNRGASQAGMTGYGMPRQIL 681
+NRGASQAGMTGYG PRQI+
Sbjct: 181 SNRGASQAGMTGYGRPRQII 200
>ref|XP_861115.1| PREDICTED: similar to transgelin isoform 3 [Canis familiaris].
Length = 220
Score = 262 bits (670), Expect = 5e-70
Identities = 129/219 (58%), Positives = 164/219 (74%), Gaps = 20/219 (9%)
Frame = +1
Query: 85 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
MAN+GP+YG+SREVQ KIEK+YD +LE+ L++WI QC DVGRP GR FQ WLK+G
Sbjct: 1 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIVMQCGSDVGRPDRGRLGFQVWLKNGV 60
Query: 265 VLCELINGLYPEGQAPVKKIQ-ASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEG 441
+L +L+N LYP+G PVK + +M FKQMEQ++QFL+AAE YG+ TD+FQTVDL+EG
Sbjct: 61 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLYEG 120
Query: 442 KNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPK-------------------KSKENPR 564
K++A VQRTLM LG LAV ++DG + GDPNWF K K++E+ R
Sbjct: 121 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKYVAARVPCPESLSWLPTSRKAQEHKR 180
Query: 565 NFSDNQLQEGKNVIGLQMGTNRGASQAGMTGYGMPRQIL 681
F+++QLQEGK+VIGLQMG+NRGASQAGMTGYG PRQI+
Sbjct: 181 EFTESQLQEGKHVIGLQMGSNRGASQAGMTGYGRPRQII 219
>ref|XP_861087.1| PREDICTED: similar to transgelin isoform 2 [Canis familiaris].
Length = 196
Score = 262 bits (670), Expect = 5e-70
Identities = 127/200 (63%), Positives = 159/200 (79%), Gaps = 1/200 (0%)
Frame = +1
Query: 85 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
MAN+GP+YG+SREVQ KIEK+YD +LE+ L++WI QC DVGRP GR FQ WLK+G
Sbjct: 1 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIVMQCGSDVGRPDRGRLGFQVWLKNGV 60
Query: 265 VLCELINGLYPEGQAPVKKIQ-ASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEG 441
+L +L+N LYP+G PVK + +M FKQMEQ++QFL+AAE YG+ TD+FQTVDL+EG
Sbjct: 61 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLYEG 120
Query: 442 KNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMG 621
K++A VQRTLM LG LAV ++DG + GDPNWF K R F+++QLQEGK+VIGLQMG
Sbjct: 121 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKY-----REFTESQLQEGKHVIGLQMG 175
Query: 622 TNRGASQAGMTGYGMPRQIL 681
+NRGASQAGMTGYG PRQI+
Sbjct: 176 SNRGASQAGMTGYGRPRQII 195
>ref|XP_867647.1| PREDICTED: similar to calponin 1, basic, smooth muscle isoform 3
[Canis familiaris].
Length = 258
Score = 147 bits (372), Expect = 2e-35
Identities = 83/196 (42%), Positives = 115/196 (58%)
Frame = +1
Query: 91 NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 270
NRGPAYGLS EV+ K+ ++YD EQ L +WI + +G NF + LKDG +L
Sbjct: 7 NRGPAYGLSAEVKNKLAQKYDHQREQELREWIEGVTGRRIGN------NFMDGLKDGIIL 60
Query: 271 CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 450
CE IN L P VKK+ ST + Q+E I F++A +YG+ DIF+ DL+E N
Sbjct: 61 CEFINKLQP---GSVKKVNESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNH 117
Query: 451 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 630
VQ TL+ L +A + + + G K +++ R F +L+EG+N+IGLQMGTN+
Sbjct: 118 TQVQSTLLALASMAKTKGNKVNVG-----VKYAEKQERKFEPEKLREGRNIIGLQMGTNK 172
Query: 631 GASQAGMTGYGMPRQI 678
ASQ GMT YG R +
Sbjct: 173 FASQQGMTAYGTRRHL 188
>ref|XP_542053.1| PREDICTED: similar to calponin 1, basic, smooth muscle isoform 1
[Canis familiaris].
Length = 297
Score = 147 bits (372), Expect = 2e-35
Identities = 83/196 (42%), Positives = 115/196 (58%)
Frame = +1
Query: 91 NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 270
NRGPAYGLS EV+ K+ ++YD EQ L +WI + +G NF + LKDG +L
Sbjct: 7 NRGPAYGLSAEVKNKLAQKYDHQREQELREWIEGVTGRRIGN------NFMDGLKDGIIL 60
Query: 271 CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 450
CE IN L P VKK+ ST + Q+E I F++A +YG+ DIF+ DL+E N
Sbjct: 61 CEFINKLQP---GSVKKVNESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNH 117
Query: 451 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 630
VQ TL+ L +A + + + G K +++ R F +L+EG+N+IGLQMGTN+
Sbjct: 118 TQVQSTLLALASMAKTKGNKVNVG-----VKYAEKQERKFEPEKLREGRNIIGLQMGTNK 172
Query: 631 GASQAGMTGYGMPRQI 678
ASQ GMT YG R +
Sbjct: 173 FASQQGMTAYGTRRHL 188
>ref|XP_854646.1| PREDICTED: similar to calponin 2 isoform a isoform 1 [Canis
familiaris].
Length = 309
Score = 132 bits (333), Expect = 5e-31
Identities = 82/196 (41%), Positives = 112/196 (57%)
Frame = +1
Query: 91 NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 270
N+GP+YGLS EV+ ++ +YD E L WI +G +FQ LKDG +L
Sbjct: 7 NKGPSYGLSAEVKNRLLSKYDPQKEAELRSWIEGLTGLSIG------PDFQKGLKDGVIL 60
Query: 271 CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 450
C L+N L P V KI S + Q+E +S F++A YG+N D+F+ DL+E NM
Sbjct: 61 CTLMNKLQP---GSVPKINRSLQNWHQLENLSTFIKAMVSYGMNPVDLFEANDLFESGNM 117
Query: 451 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 630
VQ +L+ L G A + GL SG + K S++ RNF D ++ G VIGLQMGTN+
Sbjct: 118 TQVQVSLLALAGKAKTK--GLQSG-VDIGVKYSEKQERNFDDATMKAGHCVIGLQMGTNK 174
Query: 631 GASQAGMTGYGMPRQI 678
ASQ+GMT YG R +
Sbjct: 175 CASQSGMTAYGTRRHL 190
>ref|XP_537063.2| PREDICTED: similar to calponin 3 [Canis familiaris].
Length = 360
Score = 126 bits (316), Expect = 5e-29
Identities = 76/182 (41%), Positives = 104/182 (57%)
Frame = +1
Query: 133 KIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINGLYPEGQAP 312
KI +YD E+ L WI +G NFQ LKDG +LCELIN L P
Sbjct: 50 KIASKYDHQAEEDLRNWIEEVTGMSIGT------NFQLGLKDGIILCELINKLQP---GS 100
Query: 313 VKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNMACVQRTLMNLGGLA 492
VKK+ S++ + Q+E I F++A + YG+ DIF+ DL+E NM VQ TL+ L GLA
Sbjct: 101 VKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTTLVALAGLA 160
Query: 493 VARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNRGASQAGMTGYGMPR 672
+ F + K +++ R F + +L+ G++VIGLQMGTN+ ASQAGMT YG R
Sbjct: 161 KTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTAYGTRR 217
Query: 673 QI 678
+
Sbjct: 218 HL 219
>ref|XP_868614.1| PREDICTED: similar to calponin 2 isoform a isoform 2 [Canis
familiaris].
Length = 300
Score = 125 bits (314), Expect = 9e-29
Identities = 79/196 (40%), Positives = 107/196 (54%)
Frame = +1
Query: 91 NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 270
N+GP+YGLS EV+ ++ +YD E L WI +G +FQ LKDG +L
Sbjct: 7 NKGPSYGLSAEVKNRLLSKYDPQKEAELRSWIEGLTGLSIG------PDFQKGLKDGVIL 60
Query: 271 CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 450
C L+N L P V KI S + Q+E +S F++A YG+N D+F+ DL+E NM
Sbjct: 61 CTLMNKLQP---GSVPKINRSLQNWHQLENLSTFIKAMVSYGMNPVDLFEANDLFESGNM 117
Query: 451 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 630
VQ A+ GL SG + K S++ RNF D ++ G VIGLQMGTN+
Sbjct: 118 TQVQ-----------AKTKGLQSG-VDIGVKYSEKQERNFDDATMKAGHCVIGLQMGTNK 165
Query: 631 GASQAGMTGYGMPRQI 678
ASQ+GMT YG R +
Sbjct: 166 CASQSGMTAYGTRRHL 181
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 57,860,644
Number of extensions: 1811799
Number of successful extensions: 7273
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 7230
Number of HSP's successfully gapped: 13
Length of query: 429
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 323
Effective length of database: 15,340,888
Effective search space: 4955106824
Effective search space used: 4955106824
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012325
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012325
(1288 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001013617.1| transgelin-2 [Bos taurus]. 407 e-113
Alignment gi|XP_002690168.1| PREDICTED: transgelin 2-like [Bos taurus]. 357 1e-98
Alignment gi|XP_582214.3| PREDICTED: transgelin 2 [Bos taurus]. 357 1e-98
Alignment gi|NP_001029671.1| transgelin-3 [Bos taurus]. 300 2e-81
Alignment gi|NP_001039614.1| transgelin [Bos taurus]. 273 2e-73
Alignment gi|XP_002686086.1| PREDICTED: calponin 3-like [Bos taurus]. 149 5e-36
Alignment gi|XP_001254702.1| PREDICTED: calponin 3 isoform 1 [Bos taurus]. 149 5e-36
Alignment gi|NP_001039844.1| calponin-1 [Bos taurus]. 147 2e-35
Alignment gi|NP_001033268.1| calponin-3 [Bos taurus]. 146 4e-35
Alignment gi|NP_001030497.1| calponin-2 [Bos taurus]. 134 1e-31
>ref|NP_001013617.1| transgelin-2 [Bos taurus].
Length = 199
Score = 407 bits (1046), Expect = e-113
Identities = 198/199 (99%), Positives = 198/199 (99%)
Frame = +1
Query: 85 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT
Sbjct: 1 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 60
Query: 265 VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK 444
VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK
Sbjct: 61 VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK 120
Query: 445 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT 624
NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPR FSDNQLQEGKNVIGLQMGT
Sbjct: 121 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRYFSDNQLQEGKNVIGLQMGT 180
Query: 625 NRGASQAGMTGYGMPRQIL 681
NRGASQAGMTGYGMPRQIL
Sbjct: 181 NRGASQAGMTGYGMPRQIL 199
>ref|XP_002690168.1| PREDICTED: transgelin 2-like [Bos taurus].
Length = 199
Score = 357 bits (917), Expect = 1e-98
Identities = 176/199 (88%), Positives = 180/199 (90%)
Frame = +1
Query: 85 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
MANRGPAYGLS+EVQQKI+KQYDADLEQILIQWITTQCRK V RPQPG NFQNWLKDGT
Sbjct: 1 MANRGPAYGLSQEVQQKIDKQYDADLEQILIQWITTQCRKHVSRPQPGCTNFQNWLKDGT 60
Query: 265 VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK 444
VLCELINGLYPEGQAPVKKIQAST AFKQM QISQFLQAAERYGINT DI QTVDLWEGK
Sbjct: 61 VLCELINGLYPEGQAPVKKIQASTTAFKQMGQISQFLQAAERYGINTNDISQTVDLWEGK 120
Query: 445 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT 624
NMACVQRTLMNLG L VA DDGLFSGDPNWF KKSKENPR F DNQLQEGKN+ GLQMGT
Sbjct: 121 NMACVQRTLMNLGRLVVAWDDGLFSGDPNWFTKKSKENPRYFPDNQLQEGKNLFGLQMGT 180
Query: 625 NRGASQAGMTGYGMPRQIL 681
N GASQAG+T Y MP QIL
Sbjct: 181 NHGASQAGLTDYAMPCQIL 199
>ref|XP_582214.3| PREDICTED: transgelin 2 [Bos taurus].
Length = 199
Score = 357 bits (917), Expect = 1e-98
Identities = 176/199 (88%), Positives = 180/199 (90%)
Frame = +1
Query: 85 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
MANRGPAYGLS+EVQQKI+KQYDADLEQILIQWITTQCRK V RPQPG NFQNWLKDGT
Sbjct: 1 MANRGPAYGLSQEVQQKIDKQYDADLEQILIQWITTQCRKHVSRPQPGCTNFQNWLKDGT 60
Query: 265 VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK 444
VLCELINGLYPEGQAPVKKIQAST AFKQM QISQFLQAAERYGINT DI QTVDLWEGK
Sbjct: 61 VLCELINGLYPEGQAPVKKIQASTTAFKQMGQISQFLQAAERYGINTNDISQTVDLWEGK 120
Query: 445 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT 624
NMACVQRTLMNLG L VA DDGLFSGDPNWF KKSKENPR F DNQLQEGKN+ GLQMGT
Sbjct: 121 NMACVQRTLMNLGRLVVAWDDGLFSGDPNWFTKKSKENPRYFPDNQLQEGKNLFGLQMGT 180
Query: 625 NRGASQAGMTGYGMPRQIL 681
N GASQAG+T Y MP QIL
Sbjct: 181 NHGASQAGLTDYAMPCQIL 199
>ref|NP_001029671.1| transgelin-3 [Bos taurus].
Length = 199
Score = 300 bits (767), Expect = 2e-81
Identities = 139/199 (69%), Positives = 168/199 (84%)
Frame = +1
Query: 85 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
MANRGP+YGLSREVQ+KIE++YDADLE L+ WI QC +D+ P PGR +FQ WL DGT
Sbjct: 1 MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRAHFQKWLMDGT 60
Query: 265 VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK 444
VLC+LIN LYP GQ P+ KI S MAFKQMEQISQFL+AAE YG+ TTDIFQTVDLWEGK
Sbjct: 61 VLCKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAEIYGVRTTDIFQTVDLWEGK 120
Query: 445 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT 624
+MA VQRTLM LG +AV +DDG + G+P+WF +K+++N R FS+ QL++G+NVIGLQMG+
Sbjct: 121 DMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGS 180
Query: 625 NRGASQAGMTGYGMPRQIL 681
N+GASQAGMTGYGMPRQI+
Sbjct: 181 NKGASQAGMTGYGMPRQIM 199
>ref|NP_001039614.1| transgelin [Bos taurus].
Length = 201
Score = 273 bits (698), Expect = 2e-73
Identities = 129/200 (64%), Positives = 164/200 (82%), Gaps = 1/200 (0%)
Frame = +1
Query: 85 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
MAN+GP+YG+SREVQ KIEK+YD +LE+ L++WI QC DVGRP GR FQ WLK+G
Sbjct: 1 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIVMQCGPDVGRPDRGRLGFQVWLKNGV 60
Query: 265 VLCELINGLYPEGQAPVKKIQ-ASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEG 441
+L +L+N LYP+G PVK + +M FKQMEQ++QFL+AAE YG+ TD+FQTVDL+EG
Sbjct: 61 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 120
Query: 442 KNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMG 621
K++A VQRTLM LG LAV ++DG + GDPNWF KK++E+ R F+++QLQEGK+VIGLQMG
Sbjct: 121 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 180
Query: 622 TNRGASQAGMTGYGMPRQIL 681
+NRGASQAGMTGYG PRQI+
Sbjct: 181 SNRGASQAGMTGYGRPRQII 200
>ref|XP_002686086.1| PREDICTED: calponin 3-like [Bos taurus].
Length = 329
Score = 149 bits (376), Expect = 5e-36
Identities = 86/196 (43%), Positives = 117/196 (59%)
Frame = +1
Query: 91 NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 270
N+GP+YGLS EV+ KI +YD E+ L WI +G NFQ LKDG +L
Sbjct: 5 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGA------NFQLGLKDGIIL 58
Query: 271 CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 450
CELIN L P PVKK+ S++ + Q+E I F++A + YG+ DIF+ DL+E NM
Sbjct: 59 CELINKLQP---GPVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNM 115
Query: 451 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 630
VQ TL+ L GLA + F + K +++ R F + +L+ G++VIGLQMGTN+
Sbjct: 116 TQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNK 172
Query: 631 GASQAGMTGYGMPRQI 678
ASQAGMT YG R +
Sbjct: 173 CASQAGMTAYGTRRHL 188
>ref|XP_001254702.1| PREDICTED: calponin 3 isoform 1 [Bos taurus].
Length = 329
Score = 149 bits (376), Expect = 5e-36
Identities = 86/196 (43%), Positives = 117/196 (59%)
Frame = +1
Query: 91 NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 270
N+GP+YGLS EV+ KI +YD E+ L WI +G NFQ LKDG +L
Sbjct: 5 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGA------NFQLGLKDGIIL 58
Query: 271 CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 450
CELIN L P PVKK+ S++ + Q+E I F++A + YG+ DIF+ DL+E NM
Sbjct: 59 CELINKLQP---GPVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNM 115
Query: 451 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 630
VQ TL+ L GLA + F + K +++ R F + +L+ G++VIGLQMGTN+
Sbjct: 116 TQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNK 172
Query: 631 GASQAGMTGYGMPRQI 678
ASQAGMT YG R +
Sbjct: 173 CASQAGMTAYGTRRHL 188
>ref|NP_001039844.1| calponin-1 [Bos taurus].
Length = 297
Score = 147 bits (372), Expect = 2e-35
Identities = 83/196 (42%), Positives = 115/196 (58%)
Frame = +1
Query: 91 NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 270
NRGPAYGLS EV+ K+ ++YD EQ L +WI + +G NF + LKDG +L
Sbjct: 7 NRGPAYGLSAEVKNKLAQKYDHQREQELREWIEGVTGRRIGN------NFMDGLKDGIIL 60
Query: 271 CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 450
CE IN L P VKK+ ST + Q+E I F++A +YG+ DIF+ DL+E N
Sbjct: 61 CEFINKLQP---GSVKKVNESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNH 117
Query: 451 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 630
VQ TL+ L +A + + + G K +++ R F +L+EG+N+IGLQMGTN+
Sbjct: 118 TQVQSTLLALASMAKTKGNKVNVG-----VKYAEKQERRFEPEKLREGRNIIGLQMGTNK 172
Query: 631 GASQAGMTGYGMPRQI 678
ASQ GMT YG R +
Sbjct: 173 FASQQGMTAYGTRRHL 188
>ref|NP_001033268.1| calponin-3 [Bos taurus].
Length = 329
Score = 146 bits (368), Expect = 4e-35
Identities = 85/196 (43%), Positives = 116/196 (59%)
Frame = +1
Query: 91 NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 270
N+GP+YGLS EV+ KI +YD E+ L WI +G NFQ LKDG +L
Sbjct: 5 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGA------NFQLGLKDGIIL 58
Query: 271 CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 450
CELIN L P VKK+ S++ + Q+E I F++A + YG+ DIF+ DL+E NM
Sbjct: 59 CELINKLQP---GSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNM 115
Query: 451 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 630
VQ TL+ L GLA + F + K +++ R F + +L+ G++VIGLQMGTN+
Sbjct: 116 TQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNK 172
Query: 631 GASQAGMTGYGMPRQI 678
ASQAGMT YG R +
Sbjct: 173 CASQAGMTAYGTRRHL 188
>ref|NP_001030497.1| calponin-2 [Bos taurus].
Length = 309
Score = 134 bits (338), Expect = 1e-31
Identities = 82/196 (41%), Positives = 114/196 (58%)
Frame = +1
Query: 91 NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 270
N+GP+YGLS EV+ +++ +YD E L WI VG +FQ LKDG +L
Sbjct: 7 NKGPSYGLSAEVKNRLQSKYDPQKEAELRSWIEGLTGLSVG------PDFQKGLKDGIIL 60
Query: 271 CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 450
C L+N L P V KI S + Q+E +S F++A YG+N D+F+ DL+E N+
Sbjct: 61 CTLMNKLQP---GSVPKINRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGNL 117
Query: 451 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 630
VQ +L+ L G A + GL SG + K S++ RNF D ++ G+ VIGLQMGTN+
Sbjct: 118 TQVQVSLLALAGKAKTK--GLQSG-VDIGVKYSEKQERNFDDATMKAGQCVIGLQMGTNK 174
Query: 631 GASQAGMTGYGMPRQI 678
ASQ+GMT YG R +
Sbjct: 175 CASQSGMTAYGTRRHL 190
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,669,881
Number of extensions: 1779078
Number of successful extensions: 7321
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 7301
Number of HSP's successfully gapped: 10
Length of query: 429
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 324
Effective length of database: 14,207,134
Effective search space: 4603111416
Effective search space used: 4603111416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012325
(1288 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355153.1| PREDICTED: transgelin-2-like isoform 2 [Sus ... 410 e-115
Alignment gi|XP_003125720.2| PREDICTED: transgelin-2-like isoform 1 [Sus ... 410 e-115
Alignment gi|XP_003361052.1| PREDICTED: transgelin-3-like isoform 2 [Sus ... 300 2e-81
Alignment gi|XP_003361051.1| PREDICTED: transgelin-3-like isoform 1 [Sus ... 300 2e-81
Alignment gi|XP_003357356.1| PREDICTED: transgelin [Sus scrofa]. 276 1e-74
Alignment gi|XP_003129930.1| PREDICTED: transgelin isoform 2 [Sus scrofa]. 273 2e-73
Alignment gi|XP_003129929.1| PREDICTED: transgelin isoform 1 [Sus scrofa]. 273 2e-73
Alignment gi|NP_999043.1| calponin-1 [Sus scrofa]. 147 1e-35
Alignment gi|XP_003125950.1| PREDICTED: calponin-3 [Sus scrofa]. 144 1e-34
Alignment gi|XP_003354007.1| PREDICTED: calponin-2 isoform 1 [Sus scrofa]. 133 2e-31
>ref|XP_003355153.1| PREDICTED: transgelin-2-like isoform 2 [Sus scrofa].
Length = 199
Score = 410 bits (1054), Expect = e-115
Identities = 199/199 (100%), Positives = 199/199 (100%)
Frame = +1
Query: 85 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT
Sbjct: 1 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 60
Query: 265 VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK 444
VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK
Sbjct: 61 VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK 120
Query: 445 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT 624
NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT
Sbjct: 121 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT 180
Query: 625 NRGASQAGMTGYGMPRQIL 681
NRGASQAGMTGYGMPRQIL
Sbjct: 181 NRGASQAGMTGYGMPRQIL 199
>ref|XP_003125720.2| PREDICTED: transgelin-2-like isoform 1 [Sus scrofa].
Length = 199
Score = 410 bits (1054), Expect = e-115
Identities = 199/199 (100%), Positives = 199/199 (100%)
Frame = +1
Query: 85 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT
Sbjct: 1 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 60
Query: 265 VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK 444
VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK
Sbjct: 61 VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK 120
Query: 445 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT 624
NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT
Sbjct: 121 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT 180
Query: 625 NRGASQAGMTGYGMPRQIL 681
NRGASQAGMTGYGMPRQIL
Sbjct: 181 NRGASQAGMTGYGMPRQIL 199
>ref|XP_003361052.1| PREDICTED: transgelin-3-like isoform 2 [Sus scrofa].
Length = 199
Score = 300 bits (767), Expect = 2e-81
Identities = 139/199 (69%), Positives = 168/199 (84%)
Frame = +1
Query: 85 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
MANRGP+YGLSREVQ+KIE++YDADLE L+ WI QC +D+ P PGR +FQ WL DGT
Sbjct: 1 MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRTHFQKWLMDGT 60
Query: 265 VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK 444
VLC+LIN LYP GQ P+ KI S MAFKQMEQISQFL+AAE YG+ TTDIFQTVDLWEGK
Sbjct: 61 VLCKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAEIYGVRTTDIFQTVDLWEGK 120
Query: 445 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT 624
+MA VQRTLM LG +AV +DDG + G+P+WF +K+++N R FS+ QL++G+NVIGLQMG+
Sbjct: 121 DMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGS 180
Query: 625 NRGASQAGMTGYGMPRQIL 681
N+GASQAGMTGYGMPRQI+
Sbjct: 181 NKGASQAGMTGYGMPRQIM 199
>ref|XP_003361051.1| PREDICTED: transgelin-3-like isoform 1 [Sus scrofa].
Length = 199
Score = 300 bits (767), Expect = 2e-81
Identities = 139/199 (69%), Positives = 168/199 (84%)
Frame = +1
Query: 85 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
MANRGP+YGLSREVQ+KIE++YDADLE L+ WI QC +D+ P PGR +FQ WL DGT
Sbjct: 1 MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRTHFQKWLMDGT 60
Query: 265 VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK 444
VLC+LIN LYP GQ P+ KI S MAFKQMEQISQFL+AAE YG+ TTDIFQTVDLWEGK
Sbjct: 61 VLCKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAEIYGVRTTDIFQTVDLWEGK 120
Query: 445 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT 624
+MA VQRTLM LG +AV +DDG + G+P+WF +K+++N R FS+ QL++G+NVIGLQMG+
Sbjct: 121 DMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGS 180
Query: 625 NRGASQAGMTGYGMPRQIL 681
N+GASQAGMTGYGMPRQI+
Sbjct: 181 NKGASQAGMTGYGMPRQIM 199
>ref|XP_003357356.1| PREDICTED: transgelin [Sus scrofa].
Length = 213
Score = 276 bits (707), Expect = 1e-74
Identities = 131/204 (64%), Positives = 166/204 (81%), Gaps = 1/204 (0%)
Frame = +1
Query: 73 LPFGMANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWL 252
LP MAN+GP+YG+SREVQ KIEK+YD +LE+ L++WI QC DVGRP GR FQ WL
Sbjct: 9 LPTNMANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWL 68
Query: 253 KDGTVLCELINGLYPEGQAPVKKIQ-ASTMAFKQMEQISQFLQAAERYGINTTDIFQTVD 429
K+G +L +L+N LYP+G PVK + +M FKQMEQ++QFL+AAE YG+ TD+FQTVD
Sbjct: 69 KNGVILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVD 128
Query: 430 LWEGKNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIG 609
L+EGK++A VQRTLM LG LAV ++DG + GDPNWF KK++E+ R F+++QLQEGK+VIG
Sbjct: 129 LFEGKDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIG 188
Query: 610 LQMGTNRGASQAGMTGYGMPRQIL 681
LQMG+NRGASQAGMTGYG PRQI+
Sbjct: 189 LQMGSNRGASQAGMTGYGRPRQII 212
>ref|XP_003129930.1| PREDICTED: transgelin isoform 2 [Sus scrofa].
Length = 201
Score = 273 bits (698), Expect = 2e-73
Identities = 129/200 (64%), Positives = 164/200 (82%), Gaps = 1/200 (0%)
Frame = +1
Query: 85 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
MAN+GP+YG+SREVQ KIEK+YD +LE+ L++WI QC DVGRP GR FQ WLK+G
Sbjct: 1 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 60
Query: 265 VLCELINGLYPEGQAPVKKIQ-ASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEG 441
+L +L+N LYP+G PVK + +M FKQMEQ++QFL+AAE YG+ TD+FQTVDL+EG
Sbjct: 61 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 120
Query: 442 KNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMG 621
K++A VQRTLM LG LAV ++DG + GDPNWF KK++E+ R F+++QLQEGK+VIGLQMG
Sbjct: 121 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 180
Query: 622 TNRGASQAGMTGYGMPRQIL 681
+NRGASQAGMTGYG PRQI+
Sbjct: 181 SNRGASQAGMTGYGRPRQII 200
>ref|XP_003129929.1| PREDICTED: transgelin isoform 1 [Sus scrofa].
Length = 201
Score = 273 bits (698), Expect = 2e-73
Identities = 129/200 (64%), Positives = 164/200 (82%), Gaps = 1/200 (0%)
Frame = +1
Query: 85 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
MAN+GP+YG+SREVQ KIEK+YD +LE+ L++WI QC DVGRP GR FQ WLK+G
Sbjct: 1 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 60
Query: 265 VLCELINGLYPEGQAPVKKIQ-ASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEG 441
+L +L+N LYP+G PVK + +M FKQMEQ++QFL+AAE YG+ TD+FQTVDL+EG
Sbjct: 61 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 120
Query: 442 KNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMG 621
K++A VQRTLM LG LAV ++DG + GDPNWF KK++E+ R F+++QLQEGK+VIGLQMG
Sbjct: 121 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 180
Query: 622 TNRGASQAGMTGYGMPRQIL 681
+NRGASQAGMTGYG PRQI+
Sbjct: 181 SNRGASQAGMTGYGRPRQII 200
>ref|NP_999043.1| calponin-1 [Sus scrofa].
Length = 297
Score = 147 bits (372), Expect = 1e-35
Identities = 83/196 (42%), Positives = 115/196 (58%)
Frame = +1
Query: 91 NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 270
NRGPAYGLS EV+ K+ ++YD EQ L +WI + +G NF + LKDG +L
Sbjct: 7 NRGPAYGLSAEVKNKLAQKYDHQQEQELREWIEGVTGRRIGN------NFMDGLKDGIIL 60
Query: 271 CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 450
CE IN L P VKK+ ST + Q+E I F++A +YG+ DIF+ DL+E N
Sbjct: 61 CEFINKLQP---GSVKKVNESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNH 117
Query: 451 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 630
VQ TL+ L +A + + + G K +++ R F +L+EG+N+IGLQMGTN+
Sbjct: 118 TQVQSTLLALASMAKTKGNKVNVG-----VKYAEKQERKFEPEKLREGRNIIGLQMGTNK 172
Query: 631 GASQAGMTGYGMPRQI 678
ASQ GMT YG R +
Sbjct: 173 FASQQGMTAYGTRRHL 188
>ref|XP_003125950.1| PREDICTED: calponin-3 [Sus scrofa].
Length = 579
Score = 144 bits (363), Expect = 1e-34
Identities = 84/196 (42%), Positives = 116/196 (59%)
Frame = +1
Query: 91 NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 270
N+GP+YGLS EV+ KI +YD E+ L WI +G +FQ LKDG +L
Sbjct: 255 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGT------SFQLGLKDGIIL 308
Query: 271 CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 450
CELIN L P VKK+ S++ + Q+E I F++A + YG+ DIF+ DL+E NM
Sbjct: 309 CELINKLQP---GSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNM 365
Query: 451 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 630
VQ TL+ L GLA + F + K +++ R F + +L+ G++VIGLQMGTN+
Sbjct: 366 TQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNK 422
Query: 631 GASQAGMTGYGMPRQI 678
ASQAGMT YG R +
Sbjct: 423 CASQAGMTAYGTRRHL 438
>ref|XP_003354007.1| PREDICTED: calponin-2 isoform 1 [Sus scrofa].
Length = 309
Score = 133 bits (335), Expect = 2e-31
Identities = 82/196 (41%), Positives = 113/196 (57%)
Frame = +1
Query: 91 NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 270
N+GP+YGLS EV+ ++ +YD E L WI +G +FQ LKDG +L
Sbjct: 7 NKGPSYGLSAEVKNRLLSKYDPQKEAELRSWIEGLTGLSIG------PDFQKGLKDGIIL 60
Query: 271 CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 450
C L+N L P V KI S + Q+E +S F++A YG+N D+F+ DL+E NM
Sbjct: 61 CTLMNKLQP---GSVPKINRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGNM 117
Query: 451 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 630
VQ +L+ L G A + GL S D + K S++ RNF D ++ G+ VIGLQMGTN+
Sbjct: 118 TQVQVSLLALAGKAKTK--GLQS-DVDIGVKYSEKQQRNFDDATMKAGQCVIGLQMGTNK 174
Query: 631 GASQAGMTGYGMPRQI 678
ASQ+GMT YG R +
Sbjct: 175 CASQSGMTAYGTRRHL 190
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,189,574
Number of extensions: 1176252
Number of successful extensions: 4795
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 4759
Number of HSP's successfully gapped: 13
Length of query: 429
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 327
Effective length of database: 8,804,438
Effective search space: 2879051226
Effective search space used: 2879051226
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012325
(1288 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_848713.1| transgelin-2 [Mus musculus]. 398 e-111
Alignment gi|NP_062728.1| transgelin-3 [Mus musculus]. 300 2e-81
Alignment gi|NP_035656.1| transgelin [Mus musculus]. 277 1e-74
Alignment gi|NP_034052.3| calponin-1 [Mus musculus]. 147 1e-35
Alignment gi|NP_082320.1| calponin-3 [Mus musculus]. 145 5e-35
Alignment gi|NP_031751.1| calponin-2 [Mus musculus]. 134 2e-31
>ref|NP_848713.1| transgelin-2 [Mus musculus].
Length = 199
Score = 398 bits (1023), Expect = e-111
Identities = 192/199 (96%), Positives = 197/199 (98%)
Frame = +1
Query: 85 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
MANRGP+YGLSREVQQKIEKQYDADLEQILIQWITTQCR+DVG+PQPGRENFQ WLKDGT
Sbjct: 1 MANRGPSYGLSREVQQKIEKQYDADLEQILIQWITTQCREDVGQPQPGRENFQKWLKDGT 60
Query: 265 VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK 444
VLC+LIN LYPEGQAPVKKIQAS+MAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK
Sbjct: 61 VLCKLINSLYPEGQAPVKKIQASSMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK 120
Query: 445 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT 624
NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT
Sbjct: 121 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT 180
Query: 625 NRGASQAGMTGYGMPRQIL 681
NRGASQAGMTGYGMPRQIL
Sbjct: 181 NRGASQAGMTGYGMPRQIL 199
>ref|NP_062728.1| transgelin-3 [Mus musculus].
Length = 199
Score = 300 bits (767), Expect = 2e-81
Identities = 139/199 (69%), Positives = 168/199 (84%)
Frame = +1
Query: 85 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
MANRGP+YGLSREVQ+KIE++YDADLE L+ WI QC +D+ P PGR +FQ WL DGT
Sbjct: 1 MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRAHFQKWLMDGT 60
Query: 265 VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK 444
VLC+LIN LYP GQ P+ KI S MAFKQMEQISQFL+AAE YG+ TTDIFQTVDLWEGK
Sbjct: 61 VLCKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAEVYGVRTTDIFQTVDLWEGK 120
Query: 445 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT 624
+MA VQRTLM LG +AV +DDG + G+P+WF +K+++N R FS+ QL++G+NVIGLQMG+
Sbjct: 121 DMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGS 180
Query: 625 NRGASQAGMTGYGMPRQIL 681
N+GASQAGMTGYGMPRQI+
Sbjct: 181 NKGASQAGMTGYGMPRQIM 199
>ref|NP_035656.1| transgelin [Mus musculus].
Length = 201
Score = 277 bits (708), Expect = 1e-74
Identities = 132/200 (66%), Positives = 165/200 (82%), Gaps = 1/200 (0%)
Frame = +1
Query: 85 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
MAN+GP+YG+SREVQ KIEK+YD +LE+ L++WI QC DVGRP GR FQ WLK+G
Sbjct: 1 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGV 60
Query: 265 VLCELINGLYPEGQAPVKKIQ-ASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEG 441
+L +L+N LYPEG PVK + +M FKQMEQ++QFL+AAE YG+ TD+FQTVDL+EG
Sbjct: 61 ILSKLVNSLYPEGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDLYEG 120
Query: 442 KNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMG 621
K+MA VQRTLM LG LAV ++DG + GDPNWF KK++E+ R+F+D+QLQEGK+VIGLQMG
Sbjct: 121 KDMAAVQRTLMALGSLAVTKNDGNYRGDPNWFMKKAQEHKRDFTDSQLQEGKHVIGLQMG 180
Query: 622 TNRGASQAGMTGYGMPRQIL 681
+NRGASQAGMTGYG PRQI+
Sbjct: 181 SNRGASQAGMTGYGRPRQII 200
>ref|NP_034052.3| calponin-1 [Mus musculus].
Length = 297
Score = 147 bits (372), Expect = 1e-35
Identities = 83/196 (42%), Positives = 115/196 (58%)
Frame = +1
Query: 91 NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 270
NRGPAYGLS EV+ K+ ++YD EQ L +WI + +G NF + LKDG +L
Sbjct: 7 NRGPAYGLSAEVKNKLAQKYDHQREQELREWIEGVTGRRIGN------NFMDGLKDGIIL 60
Query: 271 CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 450
CE IN L P VKK+ ST + Q+E I F++A +YG+ DIF+ DL+E N
Sbjct: 61 CEFINKLQP---GSVKKVNESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNH 117
Query: 451 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 630
VQ TL+ L +A + + + G K +++ R F +L+EG+N+IGLQMGTN+
Sbjct: 118 TQVQSTLLALASMAKTKGNKVNVG-----VKYAEKQERRFEPEKLREGRNIIGLQMGTNK 172
Query: 631 GASQAGMTGYGMPRQI 678
ASQ GMT YG R +
Sbjct: 173 FASQQGMTAYGTRRHL 188
>ref|NP_082320.1| calponin-3 [Mus musculus].
Length = 330
Score = 145 bits (367), Expect = 5e-35
Identities = 85/196 (43%), Positives = 116/196 (59%)
Frame = +1
Query: 91 NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 270
N+GP+YGLS EV+ KI +YD E+ L WI +G NFQ LKDG +L
Sbjct: 5 NKGPSYGLSAEVKNKIASKYDQQAEEDLRNWIEEVTGLGIGT------NFQLGLKDGIIL 58
Query: 271 CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 450
CELIN L P VKK+ S++ + Q+E I F++A + YG+ DIF+ DL+E NM
Sbjct: 59 CELINKLQP---GSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNM 115
Query: 451 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 630
VQ TL+ L GLA + F + K +++ R F + +L+ G++VIGLQMGTN+
Sbjct: 116 TQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNK 172
Query: 631 GASQAGMTGYGMPRQI 678
ASQAGMT YG R +
Sbjct: 173 CASQAGMTAYGTRRHL 188
>ref|NP_031751.1| calponin-2 [Mus musculus].
Length = 305
Score = 134 bits (336), Expect = 2e-31
Identities = 82/196 (41%), Positives = 113/196 (57%)
Frame = +1
Query: 91 NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 270
N+GP+YGLS EV+ ++ +YD E L WI +G +FQ LKDG +L
Sbjct: 7 NKGPSYGLSAEVKNRLLSKYDPQKEAELRSWIEGLTGLSIG------PDFQKGLKDGVIL 60
Query: 271 CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 450
C L+N L P V KI S + Q+E +S F++A YG+N D+F+ DL+E NM
Sbjct: 61 CTLMNKLQP---GSVPKINRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGNM 117
Query: 451 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 630
VQ +L+ L G A + GL SG + K S++ RNF D ++ G+ VIGLQMGTN+
Sbjct: 118 TQVQVSLLALAGKAKTK--GLQSG-VDIGVKYSEKQERNFDDATMKAGQCVIGLQMGTNK 174
Query: 631 GASQAGMTGYGMPRQI 678
ASQ+GMT YG R +
Sbjct: 175 CASQSGMTAYGTRRHL 190
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 47,514,229
Number of extensions: 1449344
Number of successful extensions: 5404
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5381
Number of HSP's successfully gapped: 6
Length of query: 429
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 325
Effective length of database: 12,493,815
Effective search space: 4060489875
Effective search space used: 4060489875
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012325
(1288 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003555.1| transgelin-2 [Homo sapiens]. 408 e-114
Alignment gi|NP_037391.2| transgelin-3 [Homo sapiens]. 300 1e-81
Alignment gi|NP_001008274.1| transgelin-3 [Homo sapiens]. 300 1e-81
Alignment gi|NP_001008273.1| transgelin-3 [Homo sapiens]. 300 1e-81
Alignment gi|NP_001001522.1| transgelin [Homo sapiens]. 273 3e-73
Alignment gi|NP_003177.2| transgelin [Homo sapiens]. 273 3e-73
Alignment gi|NP_001290.2| calponin-1 [Homo sapiens]. 148 1e-35
Alignment gi|NP_001830.1| calponin-3 [Homo sapiens]. 146 5e-35
Alignment gi|NP_004359.1| calponin-2 isoform a [Homo sapiens]. 135 8e-32
Alignment gi|NP_958434.1| calponin-2 isoform b [Homo sapiens]. 114 3e-25
>ref|NP_003555.1| transgelin-2 [Homo sapiens].
Length = 199
Score = 408 bits (1048), Expect = e-114
Identities = 198/199 (99%), Positives = 198/199 (99%)
Frame = +1
Query: 85 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT
Sbjct: 1 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 60
Query: 265 VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK 444
VLCELIN LYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK
Sbjct: 61 VLCELINALYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK 120
Query: 445 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT 624
NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT
Sbjct: 121 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT 180
Query: 625 NRGASQAGMTGYGMPRQIL 681
NRGASQAGMTGYGMPRQIL
Sbjct: 181 NRGASQAGMTGYGMPRQIL 199
>ref|NP_037391.2| transgelin-3 [Homo sapiens].
Length = 199
Score = 300 bits (769), Expect = 1e-81
Identities = 139/199 (69%), Positives = 168/199 (84%)
Frame = +1
Query: 85 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
MANRGP+YGLSREVQ+KIE++YDADLE L+ WI QC +D+ P PGR +FQ WL DGT
Sbjct: 1 MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRAHFQKWLMDGT 60
Query: 265 VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK 444
VLC+LIN LYP GQ P+ KI S MAFKQMEQISQFL+AAE YG+ TTDIFQTVDLWEGK
Sbjct: 61 VLCKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAETYGVRTTDIFQTVDLWEGK 120
Query: 445 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT 624
+MA VQRTLM LG +AV +DDG + G+P+WF +K+++N R FS+ QL++G+NVIGLQMG+
Sbjct: 121 DMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGS 180
Query: 625 NRGASQAGMTGYGMPRQIL 681
N+GASQAGMTGYGMPRQI+
Sbjct: 181 NKGASQAGMTGYGMPRQIM 199
>ref|NP_001008274.1| transgelin-3 [Homo sapiens].
Length = 199
Score = 300 bits (769), Expect = 1e-81
Identities = 139/199 (69%), Positives = 168/199 (84%)
Frame = +1
Query: 85 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
MANRGP+YGLSREVQ+KIE++YDADLE L+ WI QC +D+ P PGR +FQ WL DGT
Sbjct: 1 MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRAHFQKWLMDGT 60
Query: 265 VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK 444
VLC+LIN LYP GQ P+ KI S MAFKQMEQISQFL+AAE YG+ TTDIFQTVDLWEGK
Sbjct: 61 VLCKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAETYGVRTTDIFQTVDLWEGK 120
Query: 445 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT 624
+MA VQRTLM LG +AV +DDG + G+P+WF +K+++N R FS+ QL++G+NVIGLQMG+
Sbjct: 121 DMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGS 180
Query: 625 NRGASQAGMTGYGMPRQIL 681
N+GASQAGMTGYGMPRQI+
Sbjct: 181 NKGASQAGMTGYGMPRQIM 199
>ref|NP_001008273.1| transgelin-3 [Homo sapiens].
Length = 199
Score = 300 bits (769), Expect = 1e-81
Identities = 139/199 (69%), Positives = 168/199 (84%)
Frame = +1
Query: 85 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
MANRGP+YGLSREVQ+KIE++YDADLE L+ WI QC +D+ P PGR +FQ WL DGT
Sbjct: 1 MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRAHFQKWLMDGT 60
Query: 265 VLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK 444
VLC+LIN LYP GQ P+ KI S MAFKQMEQISQFL+AAE YG+ TTDIFQTVDLWEGK
Sbjct: 61 VLCKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAETYGVRTTDIFQTVDLWEGK 120
Query: 445 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT 624
+MA VQRTLM LG +AV +DDG + G+P+WF +K+++N R FS+ QL++G+NVIGLQMG+
Sbjct: 121 DMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGS 180
Query: 625 NRGASQAGMTGYGMPRQIL 681
N+GASQAGMTGYGMPRQI+
Sbjct: 181 NKGASQAGMTGYGMPRQIM 199
>ref|NP_001001522.1| transgelin [Homo sapiens].
Length = 201
Score = 273 bits (698), Expect = 3e-73
Identities = 130/200 (65%), Positives = 164/200 (82%), Gaps = 1/200 (0%)
Frame = +1
Query: 85 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
MAN+GP+YG+SREVQ KIEK+YD +LE+ L++WI QC DVGRP GR FQ WLK+G
Sbjct: 1 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 60
Query: 265 VLCELINGLYPEGQAPVKKIQ-ASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEG 441
+L +L+N LYP+G PVK + +M FKQMEQ++QFL+AAE YG+ TD+FQTVDL+EG
Sbjct: 61 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDLFEG 120
Query: 442 KNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMG 621
K+MA VQRTLM LG LAV ++DG + GDPNWF KK++E+ R F+++QLQEGK+VIGLQMG
Sbjct: 121 KDMAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 180
Query: 622 TNRGASQAGMTGYGMPRQIL 681
+NRGASQAGMTGYG PRQI+
Sbjct: 181 SNRGASQAGMTGYGRPRQII 200
>ref|NP_003177.2| transgelin [Homo sapiens].
Length = 201
Score = 273 bits (698), Expect = 3e-73
Identities = 130/200 (65%), Positives = 164/200 (82%), Gaps = 1/200 (0%)
Frame = +1
Query: 85 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 264
MAN+GP+YG+SREVQ KIEK+YD +LE+ L++WI QC DVGRP GR FQ WLK+G
Sbjct: 1 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 60
Query: 265 VLCELINGLYPEGQAPVKKIQ-ASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEG 441
+L +L+N LYP+G PVK + +M FKQMEQ++QFL+AAE YG+ TD+FQTVDL+EG
Sbjct: 61 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDLFEG 120
Query: 442 KNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMG 621
K+MA VQRTLM LG LAV ++DG + GDPNWF KK++E+ R F+++QLQEGK+VIGLQMG
Sbjct: 121 KDMAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 180
Query: 622 TNRGASQAGMTGYGMPRQIL 681
+NRGASQAGMTGYG PRQI+
Sbjct: 181 SNRGASQAGMTGYGRPRQII 200
>ref|NP_001290.2| calponin-1 [Homo sapiens].
Length = 297
Score = 148 bits (373), Expect = 1e-35
Identities = 84/196 (42%), Positives = 115/196 (58%)
Frame = +1
Query: 91 NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 270
NRGPAYGLS EV+ K+ ++YD EQ L +WI + +G NF + LKDG +L
Sbjct: 7 NRGPAYGLSAEVKNKLAQKYDHQREQELREWIEGVTGRRIGN------NFMDGLKDGIIL 60
Query: 271 CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 450
CE IN L P VKKI ST + Q+E I F++A +YG+ DIF+ DL+E N
Sbjct: 61 CEFINKLQP---GSVKKINESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNH 117
Query: 451 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 630
VQ TL+ L +A + + + G K +++ R F +L+EG+N+IGLQMGTN+
Sbjct: 118 TQVQSTLLALASMAKTKGNKVNVG-----VKYAEKQERKFEPGKLREGRNIIGLQMGTNK 172
Query: 631 GASQAGMTGYGMPRQI 678
ASQ GMT YG R +
Sbjct: 173 FASQQGMTAYGTRRHL 188
>ref|NP_001830.1| calponin-3 [Homo sapiens].
Length = 329
Score = 146 bits (368), Expect = 5e-35
Identities = 85/196 (43%), Positives = 116/196 (59%)
Frame = +1
Query: 91 NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 270
N+GP+YGLS EV+ KI +YD E+ L WI +G NFQ LKDG +L
Sbjct: 5 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIG------PNFQLGLKDGIIL 58
Query: 271 CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 450
CELIN L P VKK+ S++ + Q+E I F++A + YG+ DIF+ DL+E NM
Sbjct: 59 CELINKLQP---GSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNM 115
Query: 451 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 630
VQ TL+ L GLA + F + K +++ R F + +L+ G++VIGLQMGTN+
Sbjct: 116 TQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNK 172
Query: 631 GASQAGMTGYGMPRQI 678
ASQAGMT YG R +
Sbjct: 173 CASQAGMTAYGTRRHL 188
>ref|NP_004359.1| calponin-2 isoform a [Homo sapiens].
Length = 309
Score = 135 bits (340), Expect = 8e-32
Identities = 83/196 (42%), Positives = 114/196 (58%)
Frame = +1
Query: 91 NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 270
N+GP+YGLS EV+ ++ +YD E L WI +G +FQ LKDGT+L
Sbjct: 7 NKGPSYGLSAEVKNRLLSKYDPQKEAELRTWIEGLTGLSIG------PDFQKGLKDGTIL 60
Query: 271 CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 450
C L+N L P V KI S + Q+E +S F++A YG+N D+F+ DL+E NM
Sbjct: 61 CTLMNKLQP---GSVPKINRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGNM 117
Query: 451 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 630
VQ +L+ L G A + GL SG + K S++ RNF D ++ G+ VIGLQMGTN+
Sbjct: 118 TQVQVSLLALAGKAKTK--GLQSG-VDIGVKYSEKQERNFDDATMKAGQCVIGLQMGTNK 174
Query: 631 GASQAGMTGYGMPRQI 678
ASQ+GMT YG R +
Sbjct: 175 CASQSGMTAYGTRRHL 190
>ref|NP_958434.1| calponin-2 isoform b [Homo sapiens].
Length = 270
Score = 114 bits (284), Expect = 3e-25
Identities = 73/196 (37%), Positives = 102/196 (52%)
Frame = +1
Query: 91 NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 270
N+GP+YGLS EV+ ++ +YD E L WI +G +FQ LKDGT+L
Sbjct: 7 NKGPSYGLSAEVKNRLLSKYDPQKEAELRTWIEGLTGLSIG------PDFQKGLKDGTIL 60
Query: 271 CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 450
C L+N L P V KI S + Q+E +S F++A YG+N D+F+ DL+E NM
Sbjct: 61 CTLMNKLQP---GSVPKINRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGNM 117
Query: 451 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 630
VQ +L+ L G SG + ++ +P+N + + I LQMGTN+
Sbjct: 118 TQVQVSLLALAGKMGTNKCASQSGMTAYGTRRHLYDPKNHILPPMDH--STISLQMGTNK 175
Query: 631 GASQAGMTGYGMPRQI 678
ASQ GMT G R I
Sbjct: 176 CASQVGMTAPGTRRHI 191
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 56,631,930
Number of extensions: 1761780
Number of successful extensions: 6722
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 6685
Number of HSP's successfully gapped: 10
Length of query: 429
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 324
Effective length of database: 14,835,944
Effective search space: 4806845856
Effective search space used: 4806845856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012325
(1288 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 1520 0.0
Sscrofa_Chr04 1197 0.0
>Sscrofa_Chr13
|| Length = 218635234
Score = 1520 bits (767), Expect = 0.0
Identities = 1119/1244 (89%), Gaps = 7/1244 (0%)
Strand = Plus / Plus
Query: 14 cagccccagtcttaagtgcgcaattctcctgcctgagtgaaagctccacacagccaccac 73
|||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||
Sbjct: 23611507 cagccccagtcttaagtgtgcagctctcctgcctgagtgaaagctctccacagccaccac 23611566
Query: 74 tgcccttcggaatggccaacaggggacctgcctatggtctgagccgggaggtgcagcaga 133
||||| |||||||||| ||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 23611567 caccctttggaatggccaccaggggacctgcctaccgtctgggccgggaggtgcagcaga 23611626
Query: 134 agattgagaaacaatacgatgcagatctggagcagatcctgatccagtggatcactaccc 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23611627 agattgagaaacaatacgatgcagatctggagcagatcctgatccagtggatcactaccc 23611686
Query: 194 agtgccgcaaggatgtgggccggccccagcctgggcgcgaaaactttcagaactggctca 253
||||| |||||||||||||| ||| |||||||||| ||| |||||||||||||||||||
Sbjct: 23611687 agtgctgcaaggatgtgggctggcttcagcctgggcacgagaactttcagaactggctca 23611746
Query: 254 aggatggcacggtgctgtgtgagcttattaatgggctgtaccccgaggggcaggcccccg 313
| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
Sbjct: 23611747 aagatggcacggtgctgtgtgagcttattaatgggctgtaccccaaagggcaggccccag 23611806
Query: 314 tgaagaagatccaggcctccaccatggccttcaagcagatggaacagatctcccagttcc 373
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 23611807 tgaagaagatccaggcctccaccatggccttcaagcagatggagcagatctccccgttcc 23611866
Query: 374 tgcaagcagccgagcgctacggcatcaacaccaccgacatcttccagactgtggacctct 433
|||||||||| ||| |||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 23611867 tgcaagcagctgagtgctacggcatcaacactactgacatcttccagactgtggacctct 23611926
Query: 434 gggaaggaaagaacatggcctgtgtgcagcggacgctgatgaacctgggcgggctagcgg 493
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||| | ||
Sbjct: 23611927 gggaaggaaagaacatggcctgtgtgcagcagacgctgatgaacctgggtgggctggtgg 23611986
Query: 494 tagcccgggatgatgggctcttttccggggatcccaactggtttcccaagaaatct-aag 552
||||| ||||| |||||||||| ||| ||||||||| ||||||||||||||| | ||
Sbjct: 23611987 tagcctgggattatgggctcttctcctgggatcccagtgggtttcccaagaaatgtaaat 23612046
Query: 553 gaaaacccccggaacttctccgacaaccagctgcaggagggcaagaatgtgatcgggttg 612
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 23612047 gaaaacccccggaacttctatgataaccagctgcaggagggcaagaatgtgatcgggtta 23612106
Query: 613 cagatggggaccaaccgcggggcatcccaggcaggcatgaccggctatggcatgccacgc 672
||||||||||||||||| ||||||||| |||||||||||||||||||||| ||| |||||
Sbjct: 23612107 cagatggggaccaaccgtggggcatcctaggcaggcatgaccggctatgggatgtcacgc 23612166
Query: 673 cagatcctctgatcctgcccacagccctgcccccgcccgccgtgaatnnnnnnnnnnnnn 732
|||||||||||||||||||| |||||||||||| ||| |||||||||
Sbjct: 23612167 cagatcctctgatcctgcccgcagccctgcccctgcctgccgtgaatggttgatatgtat 23612226
Query: 733 nnnnnnnnnnncaatgacattccccgagagccccgggagctctcacactcccgcctgcca 792
|||||||||||||| ||||||| |||||||||| |||||| |||||||
Sbjct: 23612227 atatattttagcaatgacattccccaagagccctaggagctctcatactccctcctgcca 23612286
Query: 793 gggtgggggcctggcctgtctcctcttggggtgcccggcggtggcctctcccctgtgctt 852
|||||||| | || |||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 23612287 gggtggggacatgccctgtctcctcttggggtgcccagcagtggcctctcccctgtgctt 23612346
Query: 853 tactaatacattcctttctccagacccaccagaactggaccaatggacttttttccctgg 912
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 23612347 tactaatacattcctttctccagacccaccagaactggaccaactgacctttttccctgg 23612406
Query: 913 gaccaaaactgaggggtggg----gggttgct--cgccccatgcccctctccccaccaag 966
|||||||||||||||||||| ||| ||| | ||| ||||||||||||||||||||
Sbjct: 23612407 gaccaaaactgaggggtgggggttggggggctgccccccaatgcccctctccccaccaag 23612466
Query: 967 cctcttctctttttctcgggcttnnnnnnnaccaccccagccccaataacccgggctctg 1026
||||||||||||||||| ||| | || |||||||||||| ||||||||||||
Sbjct: 23612467 cctcttctctttttctcaggcctccccaccacagccccagccccaacaacccgggctcta 23612526
Query: 1027 tgccttagtctgttccttggctaggggtcaaggatgctgcctaatggccctctccccaca 1086
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 23612527 cgccttagtctgttccttggctaggggtcaaggatgctgcctaatggccctctccccgca 23612586
Query: 1087 agtatgcctcgcccgcagccgtggctgcagggacttaatctctagggaggggctgtggca 1146
|||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 23612587 agtatgcctcacccgcagccatggctgcagggacttagtctctagggaggggctgtggcg 23612646
Query: 1147 gctgccaccccagcccagctggactgcactcaccacagttctggggcagcttgccccgag 1206
||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||
Sbjct: 23612647 gctgccaccccagcccagctgaactgcactcactacagttctggggcagcctgccccgac 23612706
Query: 1207 agaggtcctctggcttctcattttccattcctctcgcccagcta 1250
||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 23612707 agaggccctctggcttctcattttccattcctctcgcccggcta 23612750
Score = 1518 bits (766), Expect = 0.0
Identities = 1117/1243 (89%), Gaps = 6/1243 (0%)
Strand = Plus / Plus
Query: 14 cagccccagtcttaagtgcgcaattctcctgcctgagtgaaagctccacacagccaccac 73
|||||||||||||||||| ||| ||||||||||| ||||||| || ||||||||||||
Sbjct: 23880228 cagccccagtcttaagtgtgcagctctcctgcctgcgtgaaagttctccacagccaccac 23880287
Query: 74 tgcccttcggaatggccaacaggggacctgcctatggtctgagccgggaggtgcagcaga 133
||||| |||||||||| ||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 23880288 caccctttggaatggccaccaggggacctgcctaccgtctgggccgggaggtgcagcaga 23880347
Query: 134 agattgagaaacaatacgatgcagatctggagcagatcctgatccagtggatcactaccc 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23880348 agattgagaaacaatacgatgcagatctggagcagatcctgatccagtggatcactaccc 23880407
Query: 194 agtgccgcaaggatgtgggccggccccagcctgggcgcgaaaactttcagaactggctca 253
||||| |||||||||||||| ||| |||||||||| ||| |||||||||||||||||||
Sbjct: 23880408 agtgctgcaaggatgtgggctggcttcagcctgggcacgagaactttcagaactggctca 23880467
Query: 254 aggatggcacggtgctgtgtgagcttattaatgggctgtaccccgaggggcaggcccccg 313
| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
Sbjct: 23880468 aagatggcacggtgctgtgtgagcttattaatgggctgtaccccaaagggcaggccccag 23880527
Query: 314 tgaagaagatccaggcctccaccatggccttcaagcagatggaacagatctcccagttcc 373
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 23880528 tgaagaagatccaggcctccaccatggccttcaagcagatggagcagatctccccgttcc 23880587
Query: 374 tgcaagcagccgagcgctacggcatcaacaccaccgacatcttccagactgtggacctct 433
|||||||||| ||| |||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 23880588 tgcaagcagctgagtgctacggcatcaacactactgacatcttccagactgtggacctct 23880647
Query: 434 gggaaggaaagaacatggcctgtgtgcagcggacgctgatgaacctgggcgggctagcgg 493
|||||||||||||||||||||||||||||| || ||||||||||||||| ||||| ||||
Sbjct: 23880648 gggaaggaaagaacatggcctgtgtgcagcagatgctgatgaacctgggtgggctggcgg 23880707
Query: 494 tagcccgggatgatgggctcttttccggggatcccaactggtttcccaagaaatctaagg 553
||||| ||||| |||||||||| ||| ||||||||| ||||||||||||||| |||||
Sbjct: 23880708 tagcctgggattatgggctcttctcccgggatcccagtgggtttcccaagaaatgtaagg 23880767
Query: 554 aaaacccccggaacttctccgacaaccagctgcaggagggcaagaatgtgatcgggttgc 613
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
Sbjct: 23880768 aaaacccccggaacttctctgataaccagctgcaggagggcaagaatgtgatcgggttac 23880827
Query: 614 agatggggaccaaccgcggggcatcccaggcaggcatgaccggctatggcatgccacgcc 673
|||||||||||||||| ||||||||| |||||||||||||||||||||| ||| ||| ||
Sbjct: 23880828 agatggggaccaaccgtggggcatcctaggcaggcatgaccggctatgggatgtcacacc 23880887
Query: 674 agatcctctgatcctgcccacagccctgcccccgcccgccgtgaatnnnnnnnnnnnnnn 733
||||||||||||||||||| |||||||||||| ||| |||||||||
Sbjct: 23880888 agatcctctgatcctgcccgcagccctgcccctgcctgccgtgaatggttgatatgtata 23880947
Query: 734 nnnnnnnnnncaatgacattccccgagagccccgggagctctcacactcccgcctgccag 793
|||||||||||||| ||||||| |||||||||| |||||| |||| |||
Sbjct: 23880948 tatattttagcaatgacattccccaagagccctaggagctctcatactccctcctggcag 23881007
Query: 794 ggtgggggcctggcctgtctcctcttggggtgcccggcggtggcctctcccctgtgcttt 853
||||||| |||| ||||||||||||||| |||||| || |||||||||||||||||||||
Sbjct: 23881008 ggtggggacctgccctgtctcctcttggtgtgcccagcagtggcctctcccctgtgcttt 23881067
Query: 854 actaatacattcctttctccagacccaccagaactggaccaatggacttttttccctggg 913
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 23881068 actaatacattcctttctccagacccaccagaactggaccaactgacctttttccctggg 23881127
Query: 914 accaaaactgaggggtggg----gggttgct--cgccccatgcccctctccccaccaagc 967
||||||||||||||||||| ||| ||| | ||| |||||||||||||||||||||
Sbjct: 23881128 accaaaactgaggggtgggggttggggggctgccccccaatgcccctctccccaccaagc 23881187
Query: 968 ctcttctctttttctcgggcttnnnnnnnaccaccccagccccaataacccgggctctgt 1027
|||||||||||||||| ||| | || |||||||||||| ||||||||||||
Sbjct: 23881188 ctcttctctttttctcaggcctcctcaccacagccccagccccaacaacccgggctctac 23881247
Query: 1028 gccttagtctgttccttggctaggggtcaaggatgctgcctaatggccctctccccacaa 1087
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 23881248 gccttagtctgttcctgggctaggggtcaaggatgctgcctaatggccctctccccgcaa 23881307
Query: 1088 gtatgcctcgcccgcagccgtggctgcagggacttaatctctagggaggggctgtggcag 1147
||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||| |
Sbjct: 23881308 gtatgcctcacccgcagccatggctgcagggacttagtctctagggaggggctgtggcgg 23881367
Query: 1148 ctgccaccccagcccagctggactgcactcaccacagttctggggcagcttgccccgaga 1207
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
Sbjct: 23881368 ctgccaccccagcccagctggactgcactcactacagttctggggcagcctgccccgaca 23881427
Query: 1208 gaggtcctctggcttctcattttccattcctctcgcccagcta 1250
|||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 23881428 gaggccctctggcttctcattttccattcctctcgcccggcta 23881470
>Sscrofa_Chr04
|| Length = 143465943
Score = 1197 bits (604), Expect = 0.0
Identities = 679/713 (95%), Gaps = 1/713 (0%)
Strand = Plus / Minus
Query: 538 cccaagaaatctaaggaaaacccccggaacttctccgacaaccagctgcaggagggcaag 597
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98616456 cccaggaaatctaaggaaaacccccggaacttctccgacaaccagctgcaggagggcaag 98616397
Query: 598 aatgtgatcgggttgcagatggggaccaaccgcggggcatcccaggcaggcatgaccggc 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98616396 aatgtgatcgggttgcagatggggaccaaccgcggggcatcccaggcaggcatgaccggc 98616337
Query: 658 tatggcatgccacgccagatcctctgatcctgcccacagccctgcccccgcccgccgtga 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98616336 tatggcatgccacgccagatcctctgatcctgcccacagccctgcccccgcccgccgtga 98616277
Query: 718 atnnnnnnnnnnnnnnnnnnnnnnnncaatgacattccccgagagccccgggagctctca 777
|| ||||||||||||||||||||||||||||||||||
Sbjct: 98616276 atggttaatatatatatatattttagcaatgacattccccgagagccccgggagctctca 98616217
Query: 778 cactcccgcctgccagggtgggggcctggcctgtctcctcttggggtgcccggcggtggc 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98616216 cactcccgcctgccagggtgggggcctggcctgtctcctcttggggtgcccggcggtggc 98616157
Query: 838 ctctcccctgtgctttactaatacattcctttctccagacccaccagaactggaccaatg 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98616156 ctctcccctgtgctttactaatacattcctttctccagacccaccagaactggaccaatg 98616097
Query: 898 gacttttttccctgggaccaaaactgaggggtggggggttgctcgccccatgcccctctc 957
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 98616096 gacttttttccctgggaccaaaactgaggggtggggg-ttgctcgccccatgcccctctc 98616038
Query: 958 cccaccaagcctcttctctttttctcgggcttnnnnnnnaccaccccagccccaataacc 1017
||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 98616037 cccgccaagcctcttctctttttctcgggcttcccccccaccaccccagccccaataacc 98615978
Query: 1018 cgggctctgtgccttagtctgttccttggctaggggtcaaggatgctgcctaatggccct 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98615977 cgggctctgtgccttagtctgttccttggctaggggtcaaggatgctgcctaatggccct 98615918
Query: 1078 ctccccacaagtatgcctcgcccgcagccgtggctgcagggacttaatctctagggaggg 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98615917 ctccccacaagtatgcctcgcccgcagccgtggctgcagggacttaatctctagggaggg 98615858
Query: 1138 gctgtggcagctgccaccccagcccagctggactgcactcaccacagttctggggcagct 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98615857 gctgtggcagctgccaccccagcccagctggactgcactcaccacagttctggggcagct 98615798
Query: 1198 tgccccgagagaggtcctctggcttctcattttccattcctctcgcccagcta 1250
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98615797 tgccccgagagaggtcctctggcttctcattttccattcctctcgcccagcta 98615745
Score = 414 bits (209), Expect = e-113
Identities = 212/213 (99%)
Strand = Plus / Minus
Query: 55 agctccacacagccaccactgcccttcggaatggccaacaggggacctgcctatggtctg 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98618236 agctccacacagccaccactgcccttcggaatggccaacaggggacctgcctatggtctg 98618177
Query: 115 agccgggaggtgcagcagaagattgagaaacaatacgatgcagatctggagcagatcctg 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98618176 agccgggaggtgcagcagaagattgagaaacaatacgatgcagatctggagcagatcctg 98618117
Query: 175 atccagtggatcactacccagtgccgcaaggatgtgggccggccccagcctgggcgcgaa 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98618116 atccagtggatcactacccagtgccgcaaggatgtgggccggccccagcctgggcgcgaa 98618057
Query: 235 aactttcagaactggctcaaggatggcacggtg 267
||||||||||||||||||||||| |||||||||
Sbjct: 98618056 aactttcagaactggctcaaggacggcacggtg 98618024
Score = 335 bits (169), Expect = 4e-89
Identities = 175/177 (98%)
Strand = Plus / Minus
Query: 264 ggtgctgtgtgagcttattaatgggctgtaccccgaggggcaggcccccgtgaagaagat 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98617569 ggtgctgtgtgagcttattaatgggctgtaccccgaggggcaggcccccgtgaagaagat 98617510
Query: 324 ccaggcctccaccatggccttcaagcagatggaacagatctcccagttcctgcaagcagc 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98617509 ccaggcctccaccatggccttcaagcagatggaacagatctcccagttcctgcaagcagc 98617450
Query: 384 cgagcgctacggcatcaacaccaccgacatcttccagactgtggacctctgggaagg 440
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 98617449 cgagcgctatggcatcaacaccactgacatcttccagactgtggacctctgggaagg 98617393
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Minus
Query: 438 aggaaagaacatggcctgtgtgcagcggacgctgatgaacctgggcgggctagcggtagc 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98617099 aggaaagaacatggcctgtgtgcagcggacgctgatgaacctgggcgggctagcggtagc 98617040
Query: 498 ccgggatgatgggctcttttccggggatcccaactggtttcccaag 543
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98617039 ccgggatgatgggctcttttccggggatcccaactggtttcccaag 98616994
Score = 105 bits (53), Expect = 6e-20
Identities = 53/53 (100%)
Strand = Plus / Minus
Query: 4 attcgcgcggcagccccagtcttaagtgcgcaattctcctgcctgagtgaaag 56
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98623859 attcgcgcggcagccccagtcttaagtgcgcaattctcctgcctgagtgaaag 98623807
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,507,618
Number of extensions: 406
Number of successful extensions: 406
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 403
Number of HSP's successfully gapped: 14
Length of query: 1288
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1267
Effective length of database: 2,808,413,156
Effective search space: 3558259468652
Effective search space used: 3558259468652
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)