Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012374
(1014 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531641.2| PREDICTED: similar to microsomal NAD+-dependent... 487 e-138
Alignment gi|XP_858182.1| PREDICTED: similar to microsomal NAD+-dependent... 474 e-134
Alignment gi|XP_538239.2| PREDICTED: similar to 3-hydroxysteroid epimeras... 401 e-112
Alignment gi|XP_858059.1| PREDICTED: similar to 3-hydroxysteroid epimeras... 397 e-111
Alignment gi|XP_538240.2| PREDICTED: similar to orphan short-chain dehydr... 350 9e-97
Alignment gi|XP_538220.2| PREDICTED: similar to 11-cis retinol dehydrogen... 325 6e-89
Alignment gi|XP_545513.2| PREDICTED: similar to NADP-dependent retinol de... 309 2e-84
Alignment gi|XP_545160.2| PREDICTED: similar to 3-hydroxybutyrate dehydro... 181 8e-46
Alignment gi|XP_546810.2| PREDICTED: similar to hydroxysteroid (17-beta) ... 170 2e-42
Alignment gi|XP_853935.1| PREDICTED: similar to Corticosteroid 11-beta-de... 139 3e-33
>ref|XP_531641.2| PREDICTED: similar to microsomal NAD+-dependent retinol
dehydrogenase 4 isoform 1 [Canis familiaris].
Length = 317
Score = 487 bits (1253), Expect = e-138
Identities = 233/317 (73%), Positives = 271/317 (85%)
Frame = +2
Query: 41 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
MW RW RERQVVSHL+DKYVFITGCDSGFGNLLARQLDLRGLRVLAAC
Sbjct: 1 MWWSLAVLVGLYYLLRWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60
Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
LTE+GAQQLR QTSDRL+TV+LDVTKTES+ AA +WV+E VGDRGLWGLVNNAGIS +A
Sbjct: 61 LTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEEHVGDRGLWGLVNNAGISWPTA 120
Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 580
PNEWLTK DF+KILDVNLLG+V+VTL LL LVRK RGRVVNVSS+MGR+SL GGGYC+SK
Sbjct: 121 PNEWLTKDDFMKILDVNLLGLVEVTLSLLSLVRKARGRVVNVSSIMGRLSLCGGGYCISK 180
Query: 581 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 760
YGVEAFSDSLRREL+YFGVKVA+IEPG+F TNVT PE IS+G++ W++ SPE+++ YG+
Sbjct: 181 YGVEAFSDSLRRELTYFGVKVAVIEPGYFSTNVTNPEKISRGFQETWDRLSPEVREAYGE 240
Query: 761 TFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTF 940
FLA K + +++ C+ +L LVT+CMEHALT+CHPRTRYSPGWDA+L YLPMSYLPT
Sbjct: 241 EFLASARKPIEKLKSMCDTNLYLVTNCMEHALTACHPRTRYSPGWDAKLLYLPMSYLPTL 300
Query: 941 LVDLMIYYGAPRPAKAL 991
LVD MIY+ +PRPAKA+
Sbjct: 301 LVDTMIYWNSPRPAKAV 317
>ref|XP_858182.1| PREDICTED: similar to microsomal NAD+-dependent retinol
dehydrogenase 4 isoform 2 [Canis familiaris].
Length = 319
Score = 474 bits (1219), Expect = e-134
Identities = 230/319 (72%), Positives = 267/319 (83%), Gaps = 2/319 (0%)
Frame = +2
Query: 41 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
MW RW RERQVVSHL+DKYVFITGCDSGFGNLLARQLDLRGLRVLAAC
Sbjct: 1 MWWSLAVLVGLYYLLRWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60
Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
LTE+GAQQLR QTSDRL+TV+LDVTKTES+ AA +WV+E VGDRGLWGLVNNAGIS +A
Sbjct: 61 LTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEEHVGDRGLWGLVNNAGISWPTA 120
Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 580
PNEWLTK DF+KILDVNLLG+V+VTL LL LVRK RGRVVNVSS+MGR+SL GGGYC+SK
Sbjct: 121 PNEWLTKDDFMKILDVNLLGLVEVTLSLLSLVRKARGRVVNVSSIMGRLSLCGGGYCISK 180
Query: 581 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 760
YGVEAFSDSLRREL+YFGVKVA+IEPG+F TNVT PE IS+G++ W++ SPE+++ YG+
Sbjct: 181 YGVEAFSDSLRRELTYFGVKVAVIEPGYFSTNVTNPEKISRGFQETWDRLSPEVREAYGE 240
Query: 761 TFLALCEKAVCS--METSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLP 934
K +++ C+ +L LVT+CMEHALT+CHPRTRYSPGWDA+L YLPMSYLP
Sbjct: 241 EHARTPGKLAVKELLKSMCDTNLYLVTNCMEHALTACHPRTRYSPGWDAKLLYLPMSYLP 300
Query: 935 TFLVDLMIYYGAPRPAKAL 991
T LVD MIY+ +PRPAKA+
Sbjct: 301 TLLVDTMIYWNSPRPAKAV 319
>ref|XP_538239.2| PREDICTED: similar to 3-hydroxysteroid epimerase isoform 3 [Canis
familiaris].
Length = 317
Score = 401 bits (1031), Expect = e-112
Identities = 193/317 (60%), Positives = 238/317 (75%)
Frame = +2
Query: 41 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
MW RW RERQVVSHL DKYVFITGCDSGFGNLLARQLDLRGLRVLAAC
Sbjct: 1 MWWSLAVLVGLYCLLRWYRERQVVSHLHDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60
Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
LTE+GAQQLR QTSDRL+TV+LDVTKTES+ AA +WV+ERVGDRGLWGLVNNAGI
Sbjct: 61 LTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEERVGDRGLWGLVNNAGIFHPHC 120
Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 580
+EWL + +V + VNL G+++VTL +LPL+R+ RGR+VNVSS++GR++ FGG YC SK
Sbjct: 121 YSEWLKIEAYVDVFKVNLTGLIEVTLSMLPLLRRARGRIVNVSSILGRLAFFGGAYCSSK 180
Query: 581 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 760
YGVEAFSD+LRREL +FGVK++++EPG+F+T +T + K AW + IK+ YG
Sbjct: 181 YGVEAFSDTLRRELRHFGVKISIVEPGYFRTGMTHVAWCLERLKQAWEEVPTHIKEAYGQ 240
Query: 761 TFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTF 940
F V C+ +L+LVTDCMEHALTS HPRTRYS GWD+Q F++P+SYLPT
Sbjct: 241 KFFDAHHNGVKQGLLKCSTNLNLVTDCMEHALTSVHPRTRYSAGWDSQFFFIPLSYLPTS 300
Query: 941 LVDLMIYYGAPRPAKAL 991
L D ++ P+PA+A+
Sbjct: 301 LADYILTRSWPKPAQAV 317
>ref|XP_858059.1| PREDICTED: similar to 3-hydroxysteroid epimerase isoform 4 [Canis
familiaris].
Length = 323
Score = 397 bits (1020), Expect = e-111
Identities = 194/323 (60%), Positives = 239/323 (73%), Gaps = 6/323 (1%)
Frame = +2
Query: 41 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
MW RW RERQVVSHL DKYVFITGCDSGFGNLLARQLDLRGLRVLAAC
Sbjct: 1 MWWSLAVLVGLYCLLRWYRERQVVSHLHDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60
Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
LTE+GAQQLR QTSDRL+TV+LDVTKTES+ AA +WV+ERVGDRGLWGLVNNAGI
Sbjct: 61 LTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEERVGDRGLWGLVNNAGIFHPHC 120
Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 580
+EWL + +V + VNL G+++VTL +LPL+R+ RGR+VNVSS++GR++ FGG YC SK
Sbjct: 121 YSEWLKIEAYVDVFKVNLTGLIEVTLSMLPLLRRARGRIVNVSSILGRLAFFGGAYCSSK 180
Query: 581 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 760
YGVEAFSD+LRREL +FGVK++++EPG+F+T +T + K AW + IK+ YG
Sbjct: 181 YGVEAFSDTLRRELRHFGVKISIVEPGYFRTGMTHVAWCLERLKQAWEEVPTHIKEAYGQ 240
Query: 761 TFLA------LCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPM 922
F A V C+ +L+LVTDCMEHALTS HPRTRYS GWD+Q F++P+
Sbjct: 241 KFFASFLFLYTDHNGVKQGLLKCSTNLNLVTDCMEHALTSVHPRTRYSAGWDSQFFFIPL 300
Query: 923 SYLPTFLVDLMIYYGAPRPAKAL 991
SYLPT L D ++ P+PA+A+
Sbjct: 301 SYLPTSLADYILTRSWPKPAQAV 323
>ref|XP_538240.2| PREDICTED: similar to orphan short-chain dehydrogenase / reductase
[Canis familiaris].
Length = 313
Score = 350 bits (899), Expect = 9e-97
Identities = 169/302 (55%), Positives = 228/302 (75%)
Frame = +2
Query: 86 RWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSD 265
RW + +V +L DKYVFITGCDSGFGNLLARQL RG+RVLAAC TE+GAQ+L++ TS
Sbjct: 12 RWLKNCNLVRNLSDKYVFITGCDSGFGNLLARQLVNRGMRVLAACFTEEGAQKLQRDTSY 71
Query: 266 RLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILD 445
RL+T LLDVT+TES+ AA +WV+++VG++GLW LVNNAGI + S PNEWLTK+DFVK+++
Sbjct: 72 RLQTTLLDVTRTESIQAATQWVRDQVGEQGLWALVNNAGIGLPSGPNEWLTKEDFVKVIN 131
Query: 446 VNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELS 625
VNL+G+++VTL +LP+V+K RGRVVN+SS GRV+L GGGYC+SK+GVEAFSDS+RREL
Sbjct: 132 VNLVGLIEVTLHMLPMVKKARGRVVNMSSSGGRVALIGGGYCVSKFGVEAFSDSIRRELH 191
Query: 626 YFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCSMET 805
YFGVKV++IEPG ++T++ E + + W + E KD YG+ + + +M
Sbjct: 192 YFGVKVSIIEPGNYRTSILGKEDMVSRMRKLWERLPQETKDSYGEEYFRNYTDKLKNMMQ 251
Query: 806 SCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTFLVDLMIYYGAPRPAK 985
S + VT+ MEHA+ S PR RY+PG DA+L YLP++ LPT + D ++ PRPA
Sbjct: 252 SAEPRIREVTNSMEHAIVSRSPRVRYNPGLDAKLLYLPLAKLPTPVTDFILSRYLPRPAD 311
Query: 986 AL 991
++
Sbjct: 312 SV 313
>ref|XP_538220.2| PREDICTED: similar to 11-cis retinol dehydrogenase (11-cis RDH)
[Canis familiaris].
Length = 339
Score = 325 bits (832), Expect = 6e-89
Identities = 162/319 (50%), Positives = 224/319 (70%), Gaps = 1/319 (0%)
Frame = +2
Query: 38 AMWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAA 217
AMW W R++Q + D +VFITGCDSGFG LLA +LD RG RVLA+
Sbjct: 21 AMWLPLLLGVLLWAVLWWLRDQQSLP-ASDAFVFITGCDSGFGRLLALRLDQRGFRVLAS 79
Query: 218 CLTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVIS 397
CLT GA+ L++ S RL T LLDVT+ +SV A +WV+ VG+ GL+GLVNNAG++ I
Sbjct: 80 CLTPAGAEDLQRVASSRLHTTLLDVTEPQSVQRAAKWVETHVGEAGLFGLVNNAGVAGII 139
Query: 398 APNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLS 577
P WLT+ DF ++L+VN LG + VTL LLPL++++RGRVVN+SSV+GR++ GGGYC+S
Sbjct: 140 GPTPWLTQDDFHRVLNVNTLGPIRVTLALLPLLQQSRGRVVNISSVLGRLAANGGGYCVS 199
Query: 578 KYGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYG 757
K+G+EAFSDSLRR++++FGV+V+++EPGFF+T VT E + + W + P + YG
Sbjct: 200 KFGLEAFSDSLRRDVAHFGVRVSIVEPGFFRTPVTNLEHLENTLQECWARLPPSTQAHYG 259
Query: 758 DTFL-ALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLP 934
+ FL + M C+ DL+ V+ C+EHALT+ +PRTRYSPGWDA+L +LP SYLP
Sbjct: 260 EAFLPKYLQVQQHIMSLICDPDLTKVSRCLEHALTARYPRTRYSPGWDAKLLWLPASYLP 319
Query: 935 TFLVDLMIYYGAPRPAKAL 991
LVD ++ + P+PA+A+
Sbjct: 320 ASLVDAVLTWVLPKPAQAV 338
>ref|XP_545513.2| PREDICTED: similar to NADP-dependent retinol dehydrogenase/reductase
[Canis familiaris].
Length = 753
Score = 309 bits (792), Expect = 2e-84
Identities = 144/291 (49%), Positives = 207/291 (71%), Gaps = 1/291 (0%)
Frame = +2
Query: 89 WQRERQV-VSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSD 265
W +RQ+ ++ + DKY+FITGCD+GFGNL AR D +G V+AACLTE + L+ +TS+
Sbjct: 450 WNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESESTALKAETSE 509
Query: 266 RLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILD 445
RL TVLLDVT E+V +WVK +VG++GLWGL+NNAG+ + AP +WLT +D+ + ++
Sbjct: 510 RLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGVLGVLAPTDWLTVEDYREPIE 569
Query: 446 VNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELS 625
VNL G++ VTL LLPLV+K RGR++NVSS+ GR+++ GGGY SKY VE F+DSLRR++
Sbjct: 570 VNLFGLISVTLNLLPLVKKARGRIINVSSIGGRLAISGGGYTPSKYAVEGFNDSLRRDMK 629
Query: 626 YFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCSMET 805
FGV V+ IEPG FKT ++ P ++ W SP+IK YG++++ + +
Sbjct: 630 AFGVHVSCIEPGLFKTGLSDPIKATEKKLAIWKHLSPDIKQQYGESYIEKSLDKLKDTTS 689
Query: 806 SCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTFLVDLMI 958
N DLSLV +CM+HALTS P+TRY+ G DA+ F++P+S++P L D ++
Sbjct: 690 FVNVDLSLVVECMDHALTSLFPKTRYAAGRDAKTFWIPLSHMPAVLQDFLL 740
>ref|XP_545160.2| PREDICTED: similar to 3-hydroxybutyrate dehydrogenase precursor
[Canis familiaris].
Length = 299
Score = 181 bits (460), Expect = 8e-46
Identities = 108/273 (39%), Positives = 159/273 (58%), Gaps = 12/273 (4%)
Frame = +2
Query: 107 VVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQ----GAQQLRKQTSDRLE 274
++ + K V +TGCDSGFG LA+ L +G V A CL + G ++L SDRL
Sbjct: 5 LLKQVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDQGGDGVKELDGLKSDRLR 64
Query: 275 TVLLDVTKTESVAAAKEWVKERVGD--RGLWGLVNNAGISVISAPNEWLTKQDFVKILDV 448
T+ L+V K E V E V+ + D +G+WGLVNNAGIS E+ + + + ++ +V
Sbjct: 65 TIQLNVCKGEEVERVVEVVRSSLEDPEKGMWGLVNNAGISTFGEV-EFTSMETYKEVAEV 123
Query: 449 NLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRV-SLFGGGYCLSKYGVEAFSDSLRRELS 625
NL G V +T LPL+R+ RGR+VN+SS++GR+ + YC++K+GVEAFSD LR E+
Sbjct: 124 NLWGTVQMTKAFLPLIRRARGRIVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMY 183
Query: 626 YFGVKVAMIEPGFF--KTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCSM 799
GVKV+++EPG F T++ PE I W++ ++ YG + ++ + M
Sbjct: 184 PLGVKVSVVEPGNFIAATSLYNPERIQAIADKMWDELPEVVRKDYGRKYF---DEKIARM 240
Query: 800 ETSCNQ---DLSLVTDCMEHALTSCHPRTRYSP 889
+ CN D+S V + HALTS P TRY P
Sbjct: 241 QAYCNSGSTDISPVVSAVTHALTSRSPYTRYHP 273
>ref|XP_546810.2| PREDICTED: similar to hydroxysteroid (17-beta) dehydrogenase 2
[Canis familiaris].
Length = 382
Score = 170 bits (431), Expect = 2e-42
Identities = 103/278 (37%), Positives = 158/278 (56%), Gaps = 4/278 (1%)
Frame = +2
Query: 128 KYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQG--AQQLRKQTSDRLETVLLDVTKT 301
K V ITG DSGFG+ L++ LD G V L E+G A++LR+ S RL + +D+T
Sbjct: 84 KAVLITGGDSGFGHALSKYLDELGFTVFVGVLDEKGSGAEELRRTCSKRLSVLQMDITDQ 143
Query: 302 ESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILDVNLLGMVDVTLQ 481
+ + A V E++ DRGLW +VNNAGI + A E + D+ K + VN G V+VT
Sbjct: 144 QQIKDAHSKVVEKLQDRGLWAVVNNAGIICLPADGELIPMTDYKKCMAVNFFGAVEVTKA 203
Query: 482 LLPLVRKTRGRVVNVSSVMGRVSLFG-GGYCLSKYGVEAFSDSLRRELSYFGVKVAMIEP 658
LPL+RK++GR+VN+SS+ V + Y SK + FS +R+ELS +GVKV++I+P
Sbjct: 204 FLPLLRKSKGRLVNISSMAAGVPMEKLAAYSSSKAALTMFSAVMRQELSKWGVKVSVIQP 263
Query: 659 GFFKTNVT-KPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCSMETSCNQDLSLVT 835
G F+TN+ E S+ K + S ++++ YG ++ + S+ N D+S V
Sbjct: 264 GGFRTNIAGTSEMWSKLEKNILDHLSSDVEEDYGKDYILQQRNYLKSINIKTNTDISPVL 323
Query: 836 DCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTFLVD 949
+ HA+++ P Y+PG A +S+ PT + D
Sbjct: 324 QDIRHAVSAKSPFAFYAPGALAYCLLFFVSFSPTGIFD 361
>ref|XP_853935.1| PREDICTED: similar to Corticosteroid 11-beta-dehydrogenase, isozyme
2 (11-DH2) (11-beta-hydroxysteroid dehydrogenase type 2)
(11-beta-HSD2) (NAD-dependent 11-beta-hydroxysteroid
dehydrogenase) [Canis familiaris].
Length = 323
Score = 139 bits (351), Expect = 3e-33
Identities = 100/285 (35%), Positives = 137/285 (48%), Gaps = 9/285 (3%)
Frame = +2
Query: 149 CDSGFGNLLARQLDLRGLRVLAACLTEQG--AQQLRKQTSDRLETVLLDVTKTESVAAAK 322
CDSGFG A++LD G VLA L G A +LR S RL + +D+TK ++ A
Sbjct: 8 CDSGFGKETAKKLDAMGFTVLATVLELDGPGALELRACCSPRLRLLQMDLTKPADISRAL 67
Query: 323 EWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRK 502
E+ K GLWGLVNNAG + + A E F ++VN G +++T LLPL+R+
Sbjct: 68 EFTKAHTSSTGLWGLVNNAGHNDVVADVELSPVATFRSCMEVNFFGALELTKGLLPLLRR 127
Query: 503 TRGRVVNVSSVMGRVSL-FGGGYCLSKYGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNV 679
+RGR+V V S G + Y SK + D+ EL +GVKV++I+PG FKT
Sbjct: 128 SRGRIVTVGSPAGDMPYPCLAAYGTSKAAMALLMDTFSCELLPWGVKVSVIQPGCFKTES 187
Query: 680 TKPEAISQGYKTAWNQASP-EIKDLYGDTFLALCEKAVCSMETSCNQDLSLVTDCMEHAL 856
+ + K + P E+ YG+ ++ DLS V D + AL
Sbjct: 188 VRNVGHWEQRKQLLLASLPRELLQAYGEDYIEHLHGQFLHSLRLALPDLSPVVDAITDAL 247
Query: 857 TSCHPRTRYSPGWDAQLFYLPMSYLP-----TFLVDLMIYYGAPR 976
+ PR RY PG L Y YLP FL I + PR
Sbjct: 248 LAAQPRRRYYPGRGLGLMYFIHYYLPEGLRRRFLQTFFINHCLPR 292
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,663,064
Number of extensions: 1164548
Number of successful extensions: 5550
Number of sequences better than 1.0e-05: 51
Number of HSP's gapped: 5476
Number of HSP's successfully gapped: 51
Length of query: 338
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 235
Effective length of database: 15,440,896
Effective search space: 3628610560
Effective search space used: 3628610560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012374
(1014 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069264.1| retinol dehydrogenase 16 [Bos taurus]. 512 e-145
Alignment gi|NP_001030472.1| 17-beta-hydroxysteroid dehydrogenase type 6 ... 391 e-109
Alignment gi|NP_001077206.1| short-chain dehydrogenase/reductase family 9... 347 7e-96
Alignment gi|NP_777158.1| dehydrogenase/reductase SDR family member 9 pre... 322 3e-88
Alignment gi|NP_776591.2| 11-cis retinol dehydrogenase [Bos taurus]. 318 4e-87
Alignment gi|NP_001029772.1| D-beta-hydroxybutyrate dehydrogenase, mitoch... 178 6e-45
Alignment gi|NP_001069194.1| estradiol 17-beta-dehydrogenase 2 [Bos tauru... 177 2e-44
Alignment gi|NP_777067.1| corticosteroid 11-beta-dehydrogenase isozyme 2 ... 145 4e-35
Alignment gi|XP_002702202.1| PREDICTED: dehydrogenase/reductase SDR famil... 91 1e-18
Alignment gi|NP_001030420.1| dehydrogenase/reductase SDR family member 7B... 91 2e-18
>ref|NP_001069264.1| retinol dehydrogenase 16 [Bos taurus].
Length = 317
Score = 512 bits (1319), Expect = e-145
Identities = 248/317 (78%), Positives = 280/317 (88%)
Frame = +2
Query: 41 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
MW RW RERQVVSHLRDK+VFITGCDSGFGNLLARQLDLRGLRVLAAC
Sbjct: 1 MWLYLVVLVGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAAC 60
Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
LTE+GA+QLR QTSDRL+TV+LDVTKT+SVAAA EWVKERVGDRGLWGLVNNAGIS +A
Sbjct: 61 LTEKGAEQLRNQTSDRLQTVILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTA 120
Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 580
PNEWLTKQDF+KILDVNLLG++DVTL +LPLVRK RGRVVNVSS+MGRV+L GGGYC+SK
Sbjct: 121 PNEWLTKQDFMKILDVNLLGVIDVTLSVLPLVRKARGRVVNVSSIMGRVALLGGGYCMSK 180
Query: 581 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 760
YGVEAFSDSLRRELSYFGVKV MIEPG+FKT VT P+A+SQG++ +WNQASPEIK+LYG+
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVVMIEPGYFKTAVTSPKALSQGFQASWNQASPEIKELYGE 240
Query: 761 TFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTF 940
F+A K+V +ET+ QDLSLVT+CMEHALT+CHPRTRYSPGWDA+ YLPMSYLP+F
Sbjct: 241 KFMANLMKSVDLLETTSCQDLSLVTNCMEHALTACHPRTRYSPGWDAKFIYLPMSYLPSF 300
Query: 941 LVDLMIYYGAPRPAKAL 991
LVDLM+Y+ PRPAKAL
Sbjct: 301 LVDLMVYWRNPRPAKAL 317
>ref|NP_001030472.1| 17-beta-hydroxysteroid dehydrogenase type 6 precursor [Bos taurus].
Length = 317
Score = 391 bits (1004), Expect = e-109
Identities = 193/317 (60%), Positives = 235/317 (74%)
Frame = +2
Query: 41 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
MW RW RERQVVSHL+DK+VFITGCDSGFGN LARQLDLRGLRVLA C
Sbjct: 1 MWLYLAVLLGLYYLLRWFRERQVVSHLQDKFVFITGCDSGFGNQLARQLDLRGLRVLAGC 60
Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
LTEQGA+QLR QTSDRL+TV+LDVTKTES+AAA EWVKE VGDRGLWGLVNNAGI
Sbjct: 61 LTEQGAEQLRNQTSDRLQTVILDVTKTESIAAATEWVKECVGDRGLWGLVNNAGIFHSHG 120
Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 580
EW+ + + L VNL+G+++VTL +LPLVRK +GR+VNVSS++GR++ FG Y SK
Sbjct: 121 YAEWIKIETYRDTLRVNLIGVIEVTLSMLPLVRKAQGRIVNVSSILGRIAFFGAVYSCSK 180
Query: 581 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 760
YGVEAFSD LRREL +FGVKV+M+EPG+F+T +T + S+ K W + IK+ YG
Sbjct: 181 YGVEAFSDILRRELQHFGVKVSMVEPGYFRTAMTDWQKFSEIMKQIWKETPAHIKETYGQ 240
Query: 761 TFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTF 940
F + SC+ +L+LVTDCMEHALTS HPRTRYS GWDAQ F++P+SYLPT
Sbjct: 241 KFFDAYHDLMKQGLLSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFVPLSYLPTS 300
Query: 941 LVDLMIYYGAPRPAKAL 991
L D ++ P+PA+A+
Sbjct: 301 LADYILTRSWPKPAQAV 317
>ref|NP_001077206.1| short-chain dehydrogenase/reductase family 9C member 7 [Bos
taurus].
Length = 313
Score = 347 bits (891), Expect = 7e-96
Identities = 164/302 (54%), Positives = 230/302 (76%)
Frame = +2
Query: 86 RWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSD 265
RW + +V +L DKYVFITGCDSGFGNLLARQL RG+RVLAAC T++GAQ+L++ TS
Sbjct: 12 RWFKNCNLVRNLSDKYVFITGCDSGFGNLLARQLVDRGMRVLAACFTKEGAQKLQQDTSY 71
Query: 266 RLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILD 445
+L+T+LLDVTKTES+ AA +WV+++VG++GLW LVNNAG+ + S PNEWLTK+DFVK+++
Sbjct: 72 QLQTILLDVTKTESIKAATQWVRDQVGEQGLWALVNNAGVGLPSGPNEWLTKEDFVKVIN 131
Query: 446 VNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELS 625
VNL+G+++VTL +LP+V+K RGRVVN+SS GRV++ GGGYC+SK+GVEAFSDS+RREL
Sbjct: 132 VNLVGLIEVTLHMLPMVKKARGRVVNMSSSGGRVAVIGGGYCISKFGVEAFSDSIRRELH 191
Query: 626 YFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCSMET 805
YFGVKV++IEPG F+T + + + + + W + PE ++ YG+ + + + S
Sbjct: 192 YFGVKVSIIEPGNFRTAILGKDGLEKHMRKLWERLPPETRESYGEEYFRIYTDNLKSTMQ 251
Query: 806 SCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTFLVDLMIYYGAPRPAK 985
+ +S VT+ MEHA+ S PR RY+PG DA+L YLP++ PT + D ++ PRPA
Sbjct: 252 LADPRISEVTNSMEHAIVSRSPRIRYNPGLDAKLLYLPLAKFPTPVTDFILSRYLPRPAD 311
Query: 986 AL 991
++
Sbjct: 312 SV 313
>ref|NP_777158.1| dehydrogenase/reductase SDR family member 9 precursor [Bos taurus].
Length = 319
Score = 322 bits (826), Expect = 3e-88
Identities = 150/291 (51%), Positives = 213/291 (73%), Gaps = 1/291 (0%)
Frame = +2
Query: 89 WQRERQV-VSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSD 265
W +RQ+ ++++ DKY+FITGCD+GFGNL AR D +G V+AACLTE G+ L+ +TS+
Sbjct: 16 WNYKRQLKIANITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSE 75
Query: 266 RLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILD 445
RL TVLLDVT E+V A +WVK +VG++GLWGL+NNAGI + APN+WLT +D+ + ++
Sbjct: 76 RLHTVLLDVTDPENVKRAAQWVKNQVGEKGLWGLINNAGILGVLAPNDWLTVEDYREPVE 135
Query: 446 VNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELS 625
VNL G++ VTL +LPLV+K RGR++NVSS+ GR++ GGGY SKY VE F+DSLRR++
Sbjct: 136 VNLFGLISVTLNMLPLVKKARGRIINVSSIGGRLAFGGGGYSPSKYAVEGFNDSLRRDMK 195
Query: 626 YFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCSMET 805
FGV VA IEPG FKTN++ PE ++ W SP+IK YG++++ + + +
Sbjct: 196 AFGVHVACIEPGLFKTNLSDPEKTAEKKLAIWKHLSPDIKQQYGESYIEKSLEQLKGTAS 255
Query: 806 SCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTFLVDLMI 958
N DLSLV +CM+HALTS P+TRY+ G DA+ F++P+S++P L D ++
Sbjct: 256 FVNVDLSLVVECMDHALTSLFPKTRYAAGKDAKTFWIPLSHMPAVLQDFLL 306
>ref|NP_776591.2| 11-cis retinol dehydrogenase [Bos taurus].
Length = 318
Score = 318 bits (816), Expect = 4e-87
Identities = 155/300 (51%), Positives = 216/300 (72%), Gaps = 1/300 (0%)
Frame = +2
Query: 95 RERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSDRLE 274
R+RQ + D ++FITGCDSGFG LLA +LD RG RVLA+CLT GA+ L++ S RL
Sbjct: 19 RDRQCLP-ASDAFIFITGCDSGFGRLLALRLDQRGFRVLASCLTPSGAEDLQRVASSRLH 77
Query: 275 TVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILDVNL 454
T LLDVT +S+ A +WV+ VG+ GL+GLVNNAG++ I P W T++DF ++L+VN
Sbjct: 78 TTLLDVTDPQSIRQAVKWVETHVGEAGLFGLVNNAGVAGIIGPTPWQTREDFQRVLNVNT 137
Query: 455 LGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELSYFG 634
LG + VTL LLPL+ + RGRV+N++SV+GR++ GGGYC+SK+G+EAFSDSLRR+++ FG
Sbjct: 138 LGPIGVTLALLPLLLQARGRVINITSVLGRLAANGGGYCVSKFGLEAFSDSLRRDVAPFG 197
Query: 635 VKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCS-METSC 811
V+V+++EPGFF+T VT E + + W + P + LYG+ FL + M C
Sbjct: 198 VRVSIVEPGFFRTPVTNLETLEDTLQACWARLPPATQALYGEAFLTKYLRVQQRIMNMIC 257
Query: 812 NQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTFLVDLMIYYGAPRPAKAL 991
+ DL+ V+ C+EHALT+ HPRTRYSPGWDA+L +LP SYLP LVD ++ + P+PA+ +
Sbjct: 258 DPDLAKVSRCLEHALTARHPRTRYSPGWDAKLLWLPASYLPARLVDAVLAWVLPKPAQTV 317
>ref|NP_001029772.1| D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Bos
taurus].
Length = 344
Score = 178 bits (452), Expect = 6e-45
Identities = 112/273 (41%), Positives = 156/273 (57%), Gaps = 13/273 (4%)
Frame = +2
Query: 110 VSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQ----GAQQLRKQTSDRLET 277
V + K V ITGCDSGFG LA+ L G V A CL + G ++L SDRL T
Sbjct: 50 VDPVGSKAVLITGCDSGFGFSLAKHLHSEGFLVFAGCLMKDKGSDGVKELDSMKSDRLRT 109
Query: 278 VLLDVTKTESVAAAKEWVKERVGD--RGLWGLVNNAGISVISAPNEWLTKQDFVKILDVN 451
V L+V K+E V A E ++ + D +GLWGLVNNAGIS E+ + + + ++ +VN
Sbjct: 110 VQLNVCKSEEVDKAAEVIRSSLEDPEKGLWGLVNNAGISTFGDV-EFTSMETYKEVAEVN 168
Query: 452 LLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRV-SLFGGGYCLSKYGVEAFSDSLRRELSY 628
L G V VT LPL+R+ +GRVVN+SS+MGR+ ++ YC++K+GVEAFSD LR E+
Sbjct: 169 LWGTVRVTKAFLPLIRRAKGRVVNISSMMGRMANVARSPYCITKFGVEAFSDCLRYEMHP 228
Query: 629 FGVKVAMIEPGFFKTNVT---KPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCSM 799
GVKV+++EPG F + E I W + ++ YG + ++ V M
Sbjct: 229 LGVKVSVVEPGNFIAATSLYGGTERIQAIANKMWEELPEVVRQDYGRKYF---DEKVARM 285
Query: 800 ETSC---NQDLSLVTDCMEHALTSCHPRTRYSP 889
E+ C + D S V + HALT+ P TRY P
Sbjct: 286 ESYCTSGSTDTSPVIKAVTHALTATTPYTRYHP 318
>ref|NP_001069194.1| estradiol 17-beta-dehydrogenase 2 [Bos taurus].
Length = 388
Score = 177 bits (448), Expect = 2e-44
Identities = 105/280 (37%), Positives = 166/280 (59%), Gaps = 4/280 (1%)
Frame = +2
Query: 128 KYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQG--AQQLRKQTSDRLETVLLDVTKT 301
K V ITGCDSGFG+ LA+ LD G V A L EQG A++LR+ S L + L++T T
Sbjct: 84 KAVLITGCDSGFGHGLAKYLDELGFTVFAGVLDEQGSGAEELRRTCSKNLSVLQLNITNT 143
Query: 302 ESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILDVNLLGMVDVTLQ 481
+ + AA VKE++ ++GLW ++NNAG+ + E + ++ + + VN G V+VT
Sbjct: 144 QEIKAAYSKVKEKLQNKGLWAVINNAGVLGLPTDGELIPMTEYKRCMAVNFFGAVEVTKV 203
Query: 482 LLPLVRKTRGRVVNVSSVMGRVSLFG-GGYCLSKYGVEAFSDSLRRELSYFGVKVAMIEP 658
LPL+RK++GR+VN+SS+ G V + Y SK + FS LR+ELS +GVKV++I+P
Sbjct: 204 FLPLLRKSKGRLVNISSMAGGVPMQKMAAYGSSKAALIMFSSILRQELSKWGVKVSVIQP 263
Query: 659 GFFKTNVTKPEAISQGY-KTAWNQASPEIKDLYGDTFLALCEKAVCSMETSCNQDLSLVT 835
G FKTN++ + + +T + SPE+++ YG ++ + M+TS + D+S V
Sbjct: 264 GGFKTNISGTSQMWEKLERTVLDNLSPEVQEDYGQDYILSERSFLNLMKTSTDPDISPVL 323
Query: 836 DCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTFLVDLM 955
+ HA+++ P Y+PG + + S PT + D +
Sbjct: 324 LDVRHAISAQSPFAFYAPGKLSYPWLCFASISPTGIFDYL 363
>ref|NP_777067.1| corticosteroid 11-beta-dehydrogenase isozyme 2 [Bos taurus].
Length = 404
Score = 145 bits (367), Expect = 4e-35
Identities = 107/303 (35%), Positives = 145/303 (47%), Gaps = 13/303 (4%)
Frame = +2
Query: 134 VFITGCDSGFGNLLARQLDLRGLRVLAACL--TEQGAQQLRKQTSDRLETVLLDVTKTES 307
V ITGCDSGFGN A++LD G VLA L GA +LR S RL+ + +D+TK
Sbjct: 85 VLITGCDSGFGNATAKKLDTMGFTVLATVLDLNSPGALELRACCSSRLKLLQMDLTKPGD 144
Query: 308 VAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILDVNLLGMVDVTLQLL 487
++ E+ K GLWGLVNNAG ++ A E F ++VN G +++T LL
Sbjct: 145 ISRVLEFTKVHTPSTGLWGLVNNAGQNIFVADAELCPVATFRTCMEVNFFGALEMTKGLL 204
Query: 488 PLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRR-----ELSYFGVKVAMI 652
PL+R++ GR+V VSS G + CL+ YG + +L EL +GVKV++I
Sbjct: 205 PLLRRSSGRIVTVSSPAGDMPF----PCLAAYGTSKAALALLMGNFSCELLPWGVKVSII 260
Query: 653 EPGFFKTNVTKPEAISQGYKTAWNQASP-EIKDLYGDTFLALCEKAVCSMETSCNQDLSL 829
+P FKT K + K P E+ YG+ ++ + DLS
Sbjct: 261 QPACFKTESVKDVHQWEERKQQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQALPDLSP 320
Query: 830 VTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLP-----TFLVDLMIYYGAPRPAKAL* 994
V D + AL + P RY PG L Y YLP FL I PR +A
Sbjct: 321 VVDAITDALLAAQPLRRYYPGHGLGLIYFIHYYLPEGLRQRFLQSFFISPYVPRALQAGQ 380
Query: 995 PKL 1003
P L
Sbjct: 381 PGL 383
>ref|XP_002702202.1| PREDICTED: dehydrogenase/reductase SDR family member 7B-like [Bos
taurus].
Length = 325
Score = 91.3 bits (225), Expect = 1e-18
Identities = 68/220 (30%), Positives = 112/220 (50%), Gaps = 11/220 (5%)
Frame = +2
Query: 86 RWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLA----ACLTEQGAQQLRK 253
+W R R +++R+ V ITG SG G AR G R++ A E+ +Q+L
Sbjct: 42 QWLRMR---AYVRNAVVVITGATSGLGRECARVFHAAGARLVLCGRNAEALEELSQELAA 98
Query: 254 QTSDRLET-----VLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLT 418
+ ++T V D+ ++A A + + G + L+NNAGIS A +
Sbjct: 99 SRAPEVQTHKPCTVTFDLADPGAIAGAASEILQCFGHVDV--LINNAGISYRGAIVDTSP 156
Query: 419 KQDFVKILDVNLLGMVDVTLQLLP-LVRKTRGRVVNVSSVMGRVSL-FGGGYCLSKYGVE 592
D ++++ N G V +T LLP ++R+ +G VV +SS+ G++SL F Y SK+ +
Sbjct: 157 DVD-KRVMETNYFGPVALTKALLPAMIRRRQGHVVAISSIQGKISLPFRSAYAASKHATQ 215
Query: 593 AFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYK 712
AF D LR E+ ++V +I PG+ TN++ + G K
Sbjct: 216 AFFDCLRAEVEQHDIEVTVISPGYIHTNLSLNAVTADGSK 255
>ref|NP_001030420.1| dehydrogenase/reductase SDR family member 7B [Bos taurus].
Length = 325
Score = 90.5 bits (223), Expect = 2e-18
Identities = 68/220 (30%), Positives = 112/220 (50%), Gaps = 11/220 (5%)
Frame = +2
Query: 86 RWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLA----ACLTEQGAQQLRK 253
+W R R +++R+ V ITG SG G AR G R++ A E+ +Q+L
Sbjct: 42 QWLRMR---AYVRNAVVVITGATSGLGRECARVFHAAGARLVLCGRNAEALEELSQELAA 98
Query: 254 QTSDRLET-----VLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLT 418
+ ++T V D+ ++A A + + G + L+NNAGIS A +
Sbjct: 99 SRAPGVQTHKPCTVTFDLADPGAIAGAASEILQCFGHVDV--LINNAGISYRGAIVDTSP 156
Query: 419 KQDFVKILDVNLLGMVDVTLQLLP-LVRKTRGRVVNVSSVMGRVSL-FGGGYCLSKYGVE 592
D ++++ N G V +T LLP ++R+ +G VV +SS+ G++SL F Y SK+ +
Sbjct: 157 DVD-KRVMETNYFGPVALTKALLPAMIRRRQGHVVAISSIQGKISLPFRSAYAASKHATQ 215
Query: 593 AFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYK 712
AF D LR E+ ++V +I PG+ TN++ + G K
Sbjct: 216 AFFDCLRAEVEQHDIEVTVISPGYIHTNLSLNAVTADGSK 255
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,076,322
Number of extensions: 1130298
Number of successful extensions: 5392
Number of sequences better than 1.0e-05: 51
Number of HSP's gapped: 5319
Number of HSP's successfully gapped: 51
Length of query: 338
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 235
Effective length of database: 14,273,310
Effective search space: 3354227850
Effective search space used: 3354227850
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012374
(1014 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230795.1| retinol dehydrogenase 16 (all-trans) [Sus sc... 610 e-175
Alignment gi|XP_003355528.1| PREDICTED: retinol dehydrogenase 16-like iso... 521 e-148
Alignment gi|XP_003355527.1| PREDICTED: retinol dehydrogenase 16-like iso... 521 e-148
Alignment gi|XP_003355529.1| PREDICTED: retinol dehydrogenase 16-like [Su... 513 e-146
Alignment gi|XP_003355508.1| PREDICTED: 17-beta-hydroxysteroid dehydrogen... 397 e-111
Alignment gi|XP_003355507.1| PREDICTED: 17-beta-hydroxysteroid dehydrogen... 397 e-111
Alignment gi|XP_003355526.1| PREDICTED: short-chain dehydrogenase/reducta... 346 1e-95
Alignment gi|XP_003126302.1| PREDICTED: 11-cis retinol dehydrogenase-like... 325 3e-89
Alignment gi|XP_003133511.1| PREDICTED: dehydrogenase/reductase SDR famil... 318 3e-87
Alignment gi|XP_003133510.1| PREDICTED: dehydrogenase/reductase SDR famil... 261 6e-70
>ref|NP_001230795.1| retinol dehydrogenase 16 (all-trans) [Sus scrofa].
Length = 317
Score = 610 bits (1572), Expect = e-175
Identities = 303/317 (95%), Positives = 304/317 (95%)
Frame = +2
Query: 41 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
MW RWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC
Sbjct: 1 MWVYLAVLVGLYYLLRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60
Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA
Sbjct: 61 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 120
Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 580
PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK
Sbjct: 121 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 180
Query: 581 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 760
YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 240
Query: 761 TFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTF 940
TFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDA+LFYLPMSYLPTF
Sbjct: 241 TFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAKLFYLPMSYLPTF 300
Query: 941 LVDLMIYYGAPRPAKAL 991
LVDLMIYYGAPRPAKAL
Sbjct: 301 LVDLMIYYGAPRPAKAL 317
>ref|XP_003355528.1| PREDICTED: retinol dehydrogenase 16-like isoform 2 [Sus scrofa].
Length = 317
Score = 521 bits (1341), Expect = e-148
Identities = 260/317 (82%), Positives = 275/317 (86%)
Frame = +2
Query: 41 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
MW RWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC
Sbjct: 1 MWLYLVVLVGLYYLLRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60
Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGI + A
Sbjct: 61 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLA 120
Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 580
PNEWLTKQDF+ +LDVNLLGMVDVTLQLLPLVRKT+GRVVNVSSVMGRVSLFGGGYCLSK
Sbjct: 121 PNEWLTKQDFMVMLDVNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSK 180
Query: 581 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 760
YGVEAFSDSLRRELSYFGVKVAMIEPGFF TN+T E + AW QASPE+KDLYGD
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAMIEPGFFMTNMTAAEVFHGNLQAAWQQASPEVKDLYGD 240
Query: 761 TFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTF 940
F+A K ++ + +LSLVT+CMEHALTSCHPRTRYSPGWDA+ FYLPMSYLPTF
Sbjct: 241 AFVANFMKTYDLLKPQWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTF 300
Query: 941 LVDLMIYYGAPRPAKAL 991
LVDLM+YYGAPRPAK L
Sbjct: 301 LVDLMMYYGAPRPAKVL 317
>ref|XP_003355527.1| PREDICTED: retinol dehydrogenase 16-like isoform 1 [Sus scrofa].
Length = 317
Score = 521 bits (1341), Expect = e-148
Identities = 260/317 (82%), Positives = 275/317 (86%)
Frame = +2
Query: 41 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
MW RWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC
Sbjct: 1 MWLYLVVLVGLYYLLRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60
Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGI + A
Sbjct: 61 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLA 120
Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 580
PNEWLTKQDF+ +LDVNLLGMVDVTLQLLPLVRKT+GRVVNVSSVMGRVSLFGGGYCLSK
Sbjct: 121 PNEWLTKQDFMVMLDVNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSK 180
Query: 581 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 760
YGVEAFSDSLRRELSYFGVKVAMIEPGFF TN+T E + AW QASPE+KDLYGD
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAMIEPGFFMTNMTAAEVFHGNLQAAWQQASPEVKDLYGD 240
Query: 761 TFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTF 940
F+A K ++ + +LSLVT+CMEHALTSCHPRTRYSPGWDA+ FYLPMSYLPTF
Sbjct: 241 AFVANFMKTYDLLKPQWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTF 300
Query: 941 LVDLMIYYGAPRPAKAL 991
LVDLM+YYGAPRPAK L
Sbjct: 301 LVDLMMYYGAPRPAKVL 317
>ref|XP_003355529.1| PREDICTED: retinol dehydrogenase 16-like [Sus scrofa].
Length = 317
Score = 513 bits (1321), Expect = e-146
Identities = 256/317 (80%), Positives = 274/317 (86%)
Frame = +2
Query: 41 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
MW RWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC
Sbjct: 1 MWLYLVVLVGLYYLLRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60
Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGI A
Sbjct: 61 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICTPLA 120
Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 580
P+EWLTKQDF+ +LDVNLLGMVDVTLQLLPLVRKT+GRVVNVSSVMGRVSLFGGGYCLSK
Sbjct: 121 PSEWLTKQDFMVMLDVNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSK 180
Query: 581 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 760
YGVEAFSDSLRRELSYFGVKVA+IEPGFF TN+T E + + AW QASPE+KDLYGD
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGD 240
Query: 761 TFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTF 940
F+A K ++ + +LSLVT+CMEHALTSCHPRTRYSPGWDA+ FYLPMSYLPTF
Sbjct: 241 AFVANFMKTYDLLKPQWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTF 300
Query: 941 LVDLMIYYGAPRPAKAL 991
L+DLM+ YGAPRPAK L
Sbjct: 301 LMDLMMCYGAPRPAKVL 317
>ref|XP_003355508.1| PREDICTED: 17-beta-hydroxysteroid dehydrogenase type 6-like isoform
2 [Sus scrofa].
Length = 337
Score = 397 bits (1021), Expect = e-111
Identities = 195/317 (61%), Positives = 236/317 (74%)
Frame = +2
Query: 41 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
MW RW RERQ+VSHL DKYVFITGCDSGFGNLLARQLD+RGLRVLAAC
Sbjct: 21 MWLYLAVLVGLYYLLRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 80
Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
LTEQGAQQLRKQTSDRLETVLLDVTKTES+AAA +WVKERVGDRGLWGLVNNAG
Sbjct: 81 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 140
Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 580
EWL + ++ L VNL+G+ +VTL +LPLV+K +GR+VNVSS++GRV+ FG Y SK
Sbjct: 141 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 200
Query: 581 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 760
+GVEAFSD LR EL +FGVKV+++EPG+F+T +T + S+ K W + IKD YG
Sbjct: 201 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 260
Query: 761 TFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTF 940
F + +SC+ +L+LVTDCMEHALTS HPRTRYS GWDAQ F++P+SYLPT
Sbjct: 261 KFFDAYHDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYLPTS 320
Query: 941 LVDLMIYYGAPRPAKAL 991
L D ++ P+P +A+
Sbjct: 321 LADYILTRSWPKPVQAV 337
>ref|XP_003355507.1| PREDICTED: 17-beta-hydroxysteroid dehydrogenase type 6-like isoform
1 [Sus scrofa].
Length = 317
Score = 397 bits (1021), Expect = e-111
Identities = 195/317 (61%), Positives = 236/317 (74%)
Frame = +2
Query: 41 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
MW RW RERQ+VSHL DKYVFITGCDSGFGNLLARQLD+RGLRVLAAC
Sbjct: 1 MWLYLAVLVGLYYLLRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 60
Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
LTEQGAQQLRKQTSDRLETVLLDVTKTES+AAA +WVKERVGDRGLWGLVNNAG
Sbjct: 61 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 120
Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 580
EWL + ++ L VNL+G+ +VTL +LPLV+K +GR+VNVSS++GRV+ FG Y SK
Sbjct: 121 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 180
Query: 581 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 760
+GVEAFSD LR EL +FGVKV+++EPG+F+T +T + S+ K W + IKD YG
Sbjct: 181 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 240
Query: 761 TFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTF 940
F + +SC+ +L+LVTDCMEHALTS HPRTRYS GWDAQ F++P+SYLPT
Sbjct: 241 KFFDAYHDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYLPTS 300
Query: 941 LVDLMIYYGAPRPAKAL 991
L D ++ P+P +A+
Sbjct: 301 LADYILTRSWPKPVQAV 317
>ref|XP_003355526.1| PREDICTED: short-chain dehydrogenase/reductase family 9C member
7-like [Sus scrofa].
Length = 313
Score = 346 bits (887), Expect = 1e-95
Identities = 165/302 (54%), Positives = 228/302 (75%)
Frame = +2
Query: 86 RWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSD 265
RW + VV +L DKYVFITGCDSGFGNLLARQL RG+RVLAAC TE+GAQ+L++ TS
Sbjct: 12 RWFKNCNVVRNLSDKYVFITGCDSGFGNLLARQLVDRGMRVLAACFTEEGAQKLQQDTSY 71
Query: 266 RLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILD 445
RL+T LLDVTKTES+ AA +WV+++V ++GLW LVNNAG+ + S PNEWLTK+DFVK+++
Sbjct: 72 RLQTTLLDVTKTESIKAAAQWVRDQVSEQGLWALVNNAGVGLPSGPNEWLTKEDFVKVIN 131
Query: 446 VNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELS 625
VNL+G+++VTL +LP+V+K RGRVVN+SS GRV++ GGGYC+SK+GVEAFSDS+RREL
Sbjct: 132 VNLVGLIEVTLHMLPMVKKARGRVVNMSSSGGRVAVIGGGYCVSKFGVEAFSDSIRRELH 191
Query: 626 YFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCSMET 805
YFGVKV++IEPG ++T++ E++ + W + E +D YG+ + + + +M
Sbjct: 192 YFGVKVSIIEPGNYRTSILGKESLEMRMRKMWARLPQETRDSYGEEYFHIYTDKLKNMMQ 251
Query: 806 SCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTFLVDLMIYYGAPRPAK 985
+ VT+ MEHA+ S PR RY+PG DA+L Y+P++ LPT + D ++ PRPA
Sbjct: 252 LAEPRIRDVTNSMEHAIVSRSPRIRYNPGLDAKLLYIPLAKLPTPVTDFILSRYLPRPAD 311
Query: 986 AL 991
++
Sbjct: 312 SV 313
>ref|XP_003126302.1| PREDICTED: 11-cis retinol dehydrogenase-like [Sus scrofa].
Length = 318
Score = 325 bits (832), Expect = 3e-89
Identities = 161/300 (53%), Positives = 219/300 (73%), Gaps = 1/300 (0%)
Frame = +2
Query: 95 RERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSDRLE 274
R+RQ + D +VFITGCDSGFG LLA +LD RG RVLA+CLT GA+ L++ S RL
Sbjct: 19 RDRQSLP-TSDAFVFITGCDSGFGRLLALRLDQRGFRVLASCLTPSGAEDLQRVASSRLH 77
Query: 275 TVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILDVNL 454
T LLDVT +S+ A +WV+ VG+ GL+GLVNNAG++ I P W T++DF ++L+VN
Sbjct: 78 TTLLDVTDPQSIQRAAKWVETHVGEAGLFGLVNNAGVAGIIGPTPWQTREDFQQVLNVNT 137
Query: 455 LGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELSYFG 634
LG + VTL LLPL+R+ RGRVVNVSSV+GR++ GGGYC+SK+GVEAFSDSLRR+++ FG
Sbjct: 138 LGPIGVTLALLPLLRQARGRVVNVSSVLGRLAANGGGYCVSKFGVEAFSDSLRRDVAPFG 197
Query: 635 VKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCS-METSC 811
++V+++EPGFF+T +T PE++ KT W + P + LYG+ +L + M
Sbjct: 198 IRVSIVEPGFFQTPITNPESLDNIIKTRWARLPPATQALYGEAYLTKYLRLQHHFMNLLS 257
Query: 812 NQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTFLVDLMIYYGAPRPAKAL 991
+ DL+ V+ C+EHALT+ HPRTRYSPGWDA+L +LP SYLP LVD + + P+PA+A+
Sbjct: 258 DLDLTKVSRCLEHALTARHPRTRYSPGWDAKLLWLPASYLPASLVDAVFTWILPKPAQAV 317
>ref|XP_003133511.1| PREDICTED: dehydrogenase/reductase SDR family member 9-like isoform
1 [Sus scrofa].
Length = 319
Score = 318 bits (815), Expect = 3e-87
Identities = 148/291 (50%), Positives = 209/291 (71%), Gaps = 1/291 (0%)
Frame = +2
Query: 89 WQRERQV-VSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSD 265
W +RQ+ ++ + DKY+FITGCD+GFGNL AR D +G V+AACLTE G+ L+ +TS+
Sbjct: 16 WNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSE 75
Query: 266 RLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILD 445
RL TVLLDVT E+V +WVK +VG++GLWGL+NNAGI + AP +WLT +D+ + ++
Sbjct: 76 RLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLAPTDWLTVEDYREPIE 135
Query: 446 VNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELS 625
VNL G+++VTL +LPLV+K RGRV+NVSS+ GR++ GGGY SKY VE F+DSLRR++
Sbjct: 136 VNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFGGGGYAPSKYAVEGFNDSLRRDMK 195
Query: 626 YFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCSMET 805
FGV VA IEPG FKT + P ++ WN SP+I+ YG+ ++ C + ++
Sbjct: 196 AFGVHVACIEPGLFKTGLADPVKTAEKKLAIWNHLSPDIRQQYGEGYIEKCLSKLKGSKS 255
Query: 806 SCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTFLVDLMI 958
N DLSLV +CM+HALTS P+TRY+ G DA+ F++P+S++P L D ++
Sbjct: 256 FMNVDLSLVVECMDHALTSLFPKTRYAAGKDAKTFWIPLSHMPAVLQDFLL 306
>ref|XP_003133510.1| PREDICTED: dehydrogenase/reductase SDR family member 9-like,
partial [Sus scrofa].
Length = 245
Score = 261 bits (666), Expect = 6e-70
Identities = 121/228 (53%), Positives = 167/228 (73%), Gaps = 1/228 (0%)
Frame = +2
Query: 89 WQRERQV-VSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSD 265
W +RQ+ ++ + DKY+FITGCD+GFGNL AR D +G V+AACLTE G+ L+ +TS+
Sbjct: 16 WNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSE 75
Query: 266 RLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILD 445
RL TVLLDVT E+V +WVK +VG++GLWGL+NNAGI + AP +WLT +D+ + ++
Sbjct: 76 RLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLAPTDWLTVEDYREPIE 135
Query: 446 VNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELS 625
VNL G+++VTL +LPLV+K RGRV+NVSS+ GR++ GGGY SKY VE F+DSLRR++
Sbjct: 136 VNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFGGGGYAPSKYAVEGFNDSLRRDMK 195
Query: 626 YFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFL 769
FGV VA IEPG FKT + P ++ WN SP+I+ YG+ ++
Sbjct: 196 AFGVHVACIEPGLFKTGLADPVKTAEKKLAIWNHLSPDIRQQYGEGYI 243
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,226,810
Number of extensions: 729169
Number of successful extensions: 3573
Number of sequences better than 1.0e-05: 43
Number of HSP's gapped: 3510
Number of HSP's successfully gapped: 44
Length of query: 338
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 238
Effective length of database: 8,854,232
Effective search space: 2107307216
Effective search space used: 2107307216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012374
(1014 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_536684.2| retinol dehydrogenase 1 (all trans) [Mus muscul... 461 e-130
Alignment gi|NP_033066.1| retinol dehydrogenase 16 [Mus musculus]. 454 e-128
Alignment gi|NP_059501.1| retinol dehydrogenase 7 [Mus musculus]. 454 e-128
Alignment gi|NP_001144221.1| retinol dehydrogenase 7 [Mus musculus]. 454 e-128
Alignment gi|NP_694773.1| retinol dehydrogenase 9 [Mus musculus]. 452 e-127
Alignment gi|NP_671755.2| retinol dehydrogenase similar protein 2 [Mus mu... 446 e-125
Alignment gi|NP_663399.2| cis-retinol/3alpha hydroxysterol short-chain de... 440 e-124
Alignment gi|NP_038814.1| 17-beta-hydroxysteroid dehydrogenase type 6 [Mu... 382 e-106
Alignment gi|NP_081577.1| short-chain dehydrogenase/reductase family 9C m... 342 4e-94
Alignment gi|NP_598767.1| retinol dehydrogenase 5 [Mus musculus]. 323 2e-88
>ref|NP_536684.2| retinol dehydrogenase 1 (all trans) [Mus musculus].
Length = 317
Score = 461 bits (1187), Expect = e-130
Identities = 221/317 (69%), Positives = 263/317 (82%)
Frame = +2
Query: 41 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
MW R+ RERQVVSHL+DKYVFITGCDSGFGNLLARQLD RG+RVLAAC
Sbjct: 1 MWLYLVALVGLWTLLRFFRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60
Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
LTE+GA++LR +TSDRLETV+LDVTKTES+ AA +WVKERVG+RGLWGLVNNAGIS S
Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGISTPSG 120
Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 580
PNEW+ KQDF ++LDVNLLGM++VTL +LPLVRK RGRVVNVSSVMGR+S FGGGYC+SK
Sbjct: 121 PNEWMKKQDFARVLDVNLLGMIEVTLSMLPLVRKARGRVVNVSSVMGRMSFFGGGYCISK 180
Query: 581 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 760
YGVEAFSDSLRRELSYFGVKVA+IEPG FKT VT + +S K W++AS E+K++YG+
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAIIEPGGFKTCVTSSDRLSSNTKMIWDKASSEVKEIYGE 240
Query: 761 TFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTF 940
FL K + ++ CN+DLS+VTDCMEHALT+CHPRTRYS GWDA+ +LP+SYLPTF
Sbjct: 241 KFLLFYLKNLNELDKRCNKDLSVVTDCMEHALTACHPRTRYSAGWDAKFLFLPLSYLPTF 300
Query: 941 LVDLMIYYGAPRPAKAL 991
LVD ++Y+ + +P KAL
Sbjct: 301 LVDALLYWTSMKPEKAL 317
>ref|NP_033066.1| retinol dehydrogenase 16 [Mus musculus].
Length = 317
Score = 454 bits (1169), Expect = e-128
Identities = 220/317 (69%), Positives = 258/317 (81%)
Frame = +2
Query: 41 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
MW R+ R RQVVSHL+DKYVFITGCDSGFG LLARQLD RG+RVLAAC
Sbjct: 1 MWLYLVALVGLWTLLRFFRVRQVVSHLQDKYVFITGCDSGFGTLLARQLDRRGMRVLAAC 60
Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
LTE+GA++LR +TSDRLETV+LDVTKTES+ A +WVKE VG+RGLWGLVNNAGIS S
Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVTATQWVKEHVGNRGLWGLVNNAGISTPSG 120
Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 580
PNEW+ KQDF +LDVNLLGM++VTL +LPLVRK RGRVVNVSSVMGRVSLFGGGYC+SK
Sbjct: 121 PNEWMKKQDFAHVLDVNLLGMIEVTLSMLPLVRKARGRVVNVSSVMGRVSLFGGGYCISK 180
Query: 581 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 760
YGVEAFSDSLRRELSYFGVKVA+IEPGFF T VT + + W+Q S EI+++YG+
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAIIEPGFFLTGVTSSARLCSNTQMLWDQTSSEIREIYGE 240
Query: 761 TFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTF 940
+LA K + ++ CN+DLS VTDCMEHALT+CHPRTRYS GWDA+LFYLP+SYLPTF
Sbjct: 241 KYLASYLKRLNKLDKRCNKDLSGVTDCMEHALTACHPRTRYSAGWDAKLFYLPLSYLPTF 300
Query: 941 LVDLMIYYGAPRPAKAL 991
LVD ++Y+ + +P KAL
Sbjct: 301 LVDALLYWTSLKPEKAL 317
>ref|NP_059501.1| retinol dehydrogenase 7 [Mus musculus].
Length = 316
Score = 454 bits (1168), Expect = e-128
Identities = 222/317 (70%), Positives = 262/317 (82%)
Frame = +2
Query: 41 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
MW R+ RERQVVSHL+DKYVFITGCDSGFGNLLARQLD RG+RVLAAC
Sbjct: 1 MWLYLVALVGLWTLLRFFRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60
Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
LTE+GA+QLR +TSDRLETV+LDVTKTES+ AA +WVKERVG+RGLWGLVNNAGI V A
Sbjct: 61 LTEKGAEQLRNKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGICVF-A 119
Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 580
NEWL K+DF ILDVNLLGM++VTL +LPLVRK RGRVVN+SS MGRVSL GGGYC+SK
Sbjct: 120 INEWLKKEDFANILDVNLLGMIEVTLSMLPLVRKARGRVVNISSSMGRVSLCGGGYCISK 179
Query: 581 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 760
YGVEAFSDSLRRE+SYFGVKVA+IEPG F+TNV+ E +S + W+Q S E+K++Y
Sbjct: 180 YGVEAFSDSLRREISYFGVKVAIIEPGGFRTNVSNYERLSHSIEKLWDQTSSEVKEVYDK 239
Query: 761 TFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTF 940
FL KA+ S+ +C+ DLS+VTDCMEHALT+CHPRTRYS GWDA+LFYLP+SY+PTF
Sbjct: 240 NFLDSYIKAIQSLTDTCSDDLSVVTDCMEHALTACHPRTRYSAGWDAKLFYLPLSYMPTF 299
Query: 941 LVDLMIYYGAPRPAKAL 991
LVD M+Y+ + +PA+AL
Sbjct: 300 LVDAMLYWSSVKPAQAL 316
>ref|NP_001144221.1| retinol dehydrogenase 7 [Mus musculus].
Length = 316
Score = 454 bits (1168), Expect = e-128
Identities = 222/317 (70%), Positives = 262/317 (82%)
Frame = +2
Query: 41 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
MW R+ RERQVVSHL+DKYVFITGCDSGFGNLLARQLD RG+RVLAAC
Sbjct: 1 MWLYLVALVGLWTLLRFFRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60
Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
LTE+GA+QLR +TSDRLETV+LDVTKTES+ AA +WVKERVG+RGLWGLVNNAGI V A
Sbjct: 61 LTEKGAEQLRNKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGICVF-A 119
Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 580
NEWL K+DF ILDVNLLGM++VTL +LPLVRK RGRVVN+SS MGRVSL GGGYC+SK
Sbjct: 120 INEWLKKEDFANILDVNLLGMIEVTLSMLPLVRKARGRVVNISSSMGRVSLCGGGYCISK 179
Query: 581 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 760
YGVEAFSDSLRRE+SYFGVKVA+IEPG F+TNV+ E +S + W+Q S E+K++Y
Sbjct: 180 YGVEAFSDSLRREISYFGVKVAIIEPGGFRTNVSNYERLSHSIEKLWDQTSSEVKEVYDK 239
Query: 761 TFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTF 940
FL KA+ S+ +C+ DLS+VTDCMEHALT+CHPRTRYS GWDA+LFYLP+SY+PTF
Sbjct: 240 NFLDSYIKAIQSLTDTCSDDLSVVTDCMEHALTACHPRTRYSAGWDAKLFYLPLSYMPTF 299
Query: 941 LVDLMIYYGAPRPAKAL 991
LVD M+Y+ + +PA+AL
Sbjct: 300 LVDAMLYWSSVKPAQAL 316
>ref|NP_694773.1| retinol dehydrogenase 9 [Mus musculus].
Length = 317
Score = 452 bits (1162), Expect = e-127
Identities = 214/299 (71%), Positives = 257/299 (85%)
Frame = +2
Query: 95 RERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSDRLE 274
RERQVVS+L+DKYVFITGCDSGFGNLLARQLD RG+RVLAACLTE+GA++LR +TSDRLE
Sbjct: 19 RERQVVSYLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAACLTEKGAEELRNKTSDRLE 78
Query: 275 TVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILDVNL 454
TV+LDVTKTES+ A +WVKERVG+RGLWGLVNNAGIS+ S PNEW+ KQDF +LDVNL
Sbjct: 79 TVILDVTKTESIVTATQWVKERVGNRGLWGLVNNAGISIPSGPNEWMKKQDFAHVLDVNL 138
Query: 455 LGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELSYFG 634
LG+++VTL +LPLVRK RGRV+NV+SV+GRVSL GG YC+SKYGVEAFSDSLRRELSYFG
Sbjct: 139 LGLIEVTLSMLPLVRKARGRVINVASVLGRVSLCGGAYCISKYGVEAFSDSLRRELSYFG 198
Query: 635 VKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCSMETSCN 814
VKVA+IEPGFF T VT + + W+Q S EI+++YG+ +LA K + ++ CN
Sbjct: 199 VKVAIIEPGFFLTGVTSSARLCSNTQMLWDQTSSEIREIYGEKYLASYLKRLNELDKRCN 258
Query: 815 QDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTFLVDLMIYYGAPRPAKAL 991
+DLSLVTDCMEHALT+CHPRTRYS GWDA+LFYLP+SYLPTFLVD ++Y+ + +P KAL
Sbjct: 259 KDLSLVTDCMEHALTACHPRTRYSAGWDAKLFYLPLSYLPTFLVDALLYWTSLKPEKAL 317
>ref|NP_671755.2| retinol dehydrogenase similar protein 2 [Mus musculus].
Length = 318
Score = 446 bits (1148), Expect = e-125
Identities = 216/318 (67%), Positives = 261/318 (82%), Gaps = 1/318 (0%)
Frame = +2
Query: 41 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
MW R+ RERQVVSHL+DKYVFITGCDSGFGNLLARQLD RG+RVLAAC
Sbjct: 1 MWLYLVSLVGLWTLLRFFRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60
Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
LTE+GA++LR +TSDRLETV+LDVTKTES+ AA +WVKERVG+RGLWGLVNNAGISV
Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGISVPLG 120
Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFG-GGYCLS 577
++W+ KQ+F +LDVNLLGM++VTL +LPLVRK RGRVVNVSS+MGRVSL G GGYC+S
Sbjct: 121 LSQWMNKQNFASVLDVNLLGMIEVTLTMLPLVRKARGRVVNVSSIMGRVSLHGNGGYCIS 180
Query: 578 KYGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYG 757
KYGVEAFSDSLRRELSYFGVKVA+IEPGFF T + +S + W+Q S EI+++YG
Sbjct: 181 KYGVEAFSDSLRRELSYFGVKVAIIEPGFFLTGMASSARLSSNTQMLWDQTSSEIREIYG 240
Query: 758 DTFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPT 937
+ +LA K++ ++ CN+DLSLVTDCMEHALT+CHPRTRYS GWDA+LF++P+SYLPT
Sbjct: 241 EKYLAFYLKSLNELDKRCNKDLSLVTDCMEHALTACHPRTRYSAGWDAKLFFIPLSYLPT 300
Query: 938 FLVDLMIYYGAPRPAKAL 991
FLVD + Y+ + +P KAL
Sbjct: 301 FLVDAVFYWTSMKPEKAL 318
>ref|NP_663399.2| cis-retinol/3alpha hydroxysterol short-chain dehydrogenase-like
[Mus musculus].
Length = 318
Score = 440 bits (1132), Expect = e-124
Identities = 210/318 (66%), Positives = 258/318 (81%), Gaps = 1/318 (0%)
Frame = +2
Query: 41 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
MW R+ RERQVV HL+DKYVFITGC SGFGNLLARQLD RG+RVLAAC
Sbjct: 1 MWLYMVALLGLWMLLRFFRERQVVDHLQDKYVFITGCGSGFGNLLARQLDRRGMRVLAAC 60
Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
E+GA++LR++TS+RLETV+LDVTKTE++ AA +WVKERVG+RGLWGLVNNAGISV S
Sbjct: 61 RKEEGAEELRRKTSERLETVILDVTKTENIVAATQWVKERVGNRGLWGLVNNAGISVPSG 120
Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFG-GGYCLS 577
PNEW+ KQDF +LDVNLLG+++VTL +LPLVRK RGRVVNVSS++GRVSL G GGYC+S
Sbjct: 121 PNEWMKKQDFASVLDVNLLGLIEVTLSMLPLVRKARGRVVNVSSILGRVSLGGSGGYCIS 180
Query: 578 KYGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYG 757
KYG+EAFSDSLRREL YFGVKVA+IEPGFF T + + + W+Q S EI+++YG
Sbjct: 181 KYGIEAFSDSLRRELRYFGVKVAIIEPGFFLTGMASSARLCSNIQMLWDQTSSEIREIYG 240
Query: 758 DTFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPT 937
+ +LA K + ++ CN+DLS+VTDCMEHALT+CHPRTRYS GWDA+LF+ P+SYLPT
Sbjct: 241 EKYLASYLKNLNELDQRCNKDLSVVTDCMEHALTACHPRTRYSAGWDAKLFFTPLSYLPT 300
Query: 938 FLVDLMIYYGAPRPAKAL 991
FLVD ++Y+ +P+P KAL
Sbjct: 301 FLVDALLYWTSPKPDKAL 318
>ref|NP_038814.1| 17-beta-hydroxysteroid dehydrogenase type 6 [Mus musculus].
Length = 317
Score = 382 bits (981), Expect = e-106
Identities = 191/316 (60%), Positives = 229/316 (72%)
Frame = +2
Query: 41 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
MW RW RERQVVSHL+DKYVFITGCDSGFGNLLARQLD RG+RVLAAC
Sbjct: 1 MWFYLVTLVGLYHLLRWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60
Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
LTE+GA++LR +TSDRLETV+LDVTKTES+ AA +WVKERVGDRGLWGLVNNAG+ A
Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVAATQWVKERVGDRGLWGLVNNAGVLQPFA 120
Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 580
EW +D++ I VNL+G+ VT+ +L LV+K RGR+VNVSS +GRV+LFGG Y SK
Sbjct: 121 YIEWYRPEDYMPIFQVNLIGLTQVTISMLFLVKKARGRIVNVSSALGRVALFGGFYSCSK 180
Query: 581 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 760
YGVEAFSD LR E+ FGVKV++IEPG FKT +T E + K W A IK+ YG
Sbjct: 181 YGVEAFSDVLRHEVQDFGVKVSIIEPGSFKTEMTDAELTIERTKKVWEAAPEHIKESYGQ 240
Query: 761 TFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTF 940
F C+++LSLVTDCMEHALTS HPRTRYS GWDA+ F++P+SYLP
Sbjct: 241 QFFDDFCSTTKRELMKCSRNLSLVTDCMEHALTSTHPRTRYSAGWDAKFFFIPLSYLPAS 300
Query: 941 LVDLMIYYGAPRPAKA 988
LVD ++ +PA+A
Sbjct: 301 LVDYLLAISRGKPAQA 316
>ref|NP_081577.1| short-chain dehydrogenase/reductase family 9C member 7 [Mus
musculus].
Length = 313
Score = 342 bits (876), Expect = 4e-94
Identities = 161/302 (53%), Positives = 228/302 (75%)
Frame = +2
Query: 86 RWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSD 265
RW + +V +L +KYVFITGCDSGFGNLLA+QL RG++VLAACLTE+GAQ+L + TS
Sbjct: 12 RWFKNCNLVKNLSEKYVFITGCDSGFGNLLAKQLVDRGMKVLAACLTEEGAQKLLQDTSH 71
Query: 266 RLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILD 445
+L+T LLDVTK+E+V A +WV+++VG++GLW LVNNAG+ + S PNEWLT +DFVK+++
Sbjct: 72 QLQTFLLDVTKSENVKEAAQWVRDQVGEQGLWALVNNAGVGLPSGPNEWLTIKDFVKVIN 131
Query: 446 VNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELS 625
+NL+G++DVTL +LP+++K RGRVVN+SS GRV++FGGGYC+SK+GVEAFSDS+RREL
Sbjct: 132 INLVGLIDVTLNMLPMIKKARGRVVNMSSSGGRVAIFGGGYCVSKFGVEAFSDSIRRELH 191
Query: 626 YFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCSMET 805
+FGVKV++IEPG +KT++ EA+ K W++ E +D YG+ + K + ++
Sbjct: 192 FFGVKVSIIEPGNYKTSILGQEALESRMKKLWDRLPQETRDSYGEEYFQTYTKKLVNLMR 251
Query: 806 SCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTFLVDLMIYYGAPRPAK 985
S +S VT+ MEHA+ S PR RY+PG D + YL ++ LPT + D ++ PRPA
Sbjct: 252 SAEPRISDVTNSMEHAIVSRSPRIRYNPGLDVKFLYLTLAKLPTPVTDFILSRYLPRPAD 311
Query: 986 AL 991
++
Sbjct: 312 SV 313
>ref|NP_598767.1| retinol dehydrogenase 5 [Mus musculus].
Length = 318
Score = 323 bits (827), Expect = 2e-88
Identities = 157/300 (52%), Positives = 217/300 (72%), Gaps = 1/300 (0%)
Frame = +2
Query: 95 RERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSDRLE 274
R+RQ + D ++FITGCDSGFG LLA QLD +G +VLA CLT GA+ L++ S RL
Sbjct: 19 RDRQSLP-ASDAFIFITGCDSGFGRLLALQLDQKGFQVLAGCLTPSGAEDLQQMASSRLH 77
Query: 275 TVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILDVNL 454
T LLD+T ++V +WVK RVG+ GL+GLVNNAG++ I P WLT+ DF ++L VN
Sbjct: 78 TTLLDITDPQNVQQVAKWVKTRVGETGLFGLVNNAGVAGIIGPTPWLTQDDFQRVLSVNT 137
Query: 455 LGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELSYFG 634
LG + VTL LLPL+++ RGRVVN++SV+GR++ GGGYC+SK+G+EAFSDSLRR+++ FG
Sbjct: 138 LGPIGVTLALLPLLQQARGRVVNITSVLGRIAANGGGYCVSKFGLEAFSDSLRRDMAPFG 197
Query: 635 VKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCS-METSC 811
V+V+++EPGFF+T VT E++ K W + P I+ YG+ FL + M C
Sbjct: 198 VQVSIVEPGFFRTPVTNLESLESTLKACWARLPPAIQAHYGEAFLDTYLRVQRRIMNLIC 257
Query: 812 NQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTFLVDLMIYYGAPRPAKAL 991
+ +L+ VT C+EHALT+ HPRTRYSPGWDA+L +LP SYLP +VD ++ + PRPA+++
Sbjct: 258 DPELTKVTSCLEHALTARHPRTRYSPGWDAKLLWLPASYLPARVVDAVLTWILPRPAQSV 317
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,719,703
Number of extensions: 945602
Number of successful extensions: 4267
Number of sequences better than 1.0e-05: 49
Number of HSP's gapped: 4183
Number of HSP's successfully gapped: 49
Length of query: 338
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 236
Effective length of database: 12,553,887
Effective search space: 2962717332
Effective search space used: 2962717332
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012374
(1014 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003699.3| retinol dehydrogenase 16 [Homo sapiens]. 472 e-133
Alignment gi|NP_003716.2| 17-beta-hydroxysteroid dehydrogenase type 6 pre... 396 e-110
Alignment gi|NP_683695.1| short-chain dehydrogenase/reductase family 9C m... 333 1e-91
Alignment gi|NP_001186700.1| 11-cis retinol dehydrogenase [Homo sapiens]. 318 5e-87
Alignment gi|NP_002896.2| 11-cis retinol dehydrogenase [Homo sapiens]. 318 5e-87
Alignment gi|NP_001135743.1| dehydrogenase/reductase SDR family member 9 ... 311 6e-85
Alignment gi|NP_954674.1| dehydrogenase/reductase SDR family member 9 pre... 311 6e-85
Alignment gi|NP_001135742.1| dehydrogenase/reductase SDR family member 9 ... 311 6e-85
Alignment gi|NP_005762.2| dehydrogenase/reductase SDR family member 9 pre... 311 6e-85
Alignment gi|NP_976060.1| D-beta-hydroxybutyrate dehydrogenase, mitochond... 185 5e-47
>ref|NP_003699.3| retinol dehydrogenase 16 [Homo sapiens].
Length = 317
Score = 472 bits (1214), Expect = e-133
Identities = 233/317 (73%), Positives = 264/317 (83%)
Frame = +2
Query: 41 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
MW W RERQV+SHLRDKYVFITGCDSGFG LLARQLD RGLRVLAAC
Sbjct: 1 MWLYLAVFVGLYYLLHWYRERQVLSHLRDKYVFITGCDSGFGKLLARQLDARGLRVLAAC 60
Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
LTE+GA+QLR QTSDRLETV LDVTKTESVAAA +WVKE V D+GLWGLVNNAGIS+ +A
Sbjct: 61 LTEKGAEQLRGQTSDRLETVTLDVTKTESVAAAAQWVKECVRDKGLWGLVNNAGISLPTA 120
Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 580
PNE LTKQDFV ILDVNLLG++DVTL LLPLVR+ RGRVVNVSSVMGRVSLFGGGYC+SK
Sbjct: 121 PNELLTKQDFVTILDVNLLGVIDVTLSLLPLVRRARGRVVNVSSVMGRVSLFGGGYCISK 180
Query: 581 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 760
YGVEAFSDSLRRELSYFGVKVAMIEPG+FKT VT E + + W+++SPE+K+ YG+
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAMIEPGYFKTAVTSKERFLKSFLEIWDRSSPEVKEAYGE 240
Query: 761 TFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTF 940
F+A +K+ ME C QDLSLVT+CMEHAL +CHPRTRYS GWDA+L YLPMSY+PTF
Sbjct: 241 KFVADYKKSAEQMEQKCTQDLSLVTNCMEHALIACHPRTRYSAGWDAKLLYLPMSYMPTF 300
Query: 941 LVDLMIYYGAPRPAKAL 991
LVD ++Y+ +P PAKAL
Sbjct: 301 LVDAIMYWVSPSPAKAL 317
>ref|NP_003716.2| 17-beta-hydroxysteroid dehydrogenase type 6 precursor [Homo
sapiens].
Length = 317
Score = 396 bits (1017), Expect = e-110
Identities = 191/317 (60%), Positives = 237/317 (74%)
Frame = +2
Query: 41 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
MW W RERQVVSHL+DKYVFITGCDSGFGNLLARQLD RGLRVLAAC
Sbjct: 1 MWLYLAAFVGLYYLLHWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDARGLRVLAAC 60
Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
LTE+GA+QLR QTSDRLETV LDVTK ES+AAA +WVKE VGDRGLWGLVNNAGI
Sbjct: 61 LTEKGAEQLRGQTSDRLETVTLDVTKMESIAAATQWVKEHVGDRGLWGLVNNAGILTPIT 120
Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 580
EWL +D + +L VNL+G++ VTL +LPLVR+ RGR+VNVSS++GRV+ F GGYC+SK
Sbjct: 121 LCEWLNTEDSMNMLKVNLIGVIQVTLSMLPLVRRARGRIVNVSSILGRVAFFVGGYCVSK 180
Query: 581 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 760
YGVEAFSD LRRE+ +FGVK++++EPG+F+T +T + K +W +A IK+ YG
Sbjct: 181 YGVEAFSDILRREIQHFGVKISIVEPGYFRTGMTNMTQSLERMKQSWKEAPKHIKETYGQ 240
Query: 761 TFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTF 940
+ + +C+ +L+LVTDCMEHALTS HPRTRYS GWDA+ F++P+SYLPT
Sbjct: 241 QYFDALYNIMKEGLLNCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAKFFFIPLSYLPTS 300
Query: 941 LVDLMIYYGAPRPAKAL 991
L D ++ P+PA+A+
Sbjct: 301 LADYILTRSWPKPAQAV 317
>ref|NP_683695.1| short-chain dehydrogenase/reductase family 9C member 7 [Homo
sapiens].
Length = 313
Score = 333 bits (854), Expect = 1e-91
Identities = 157/302 (51%), Positives = 224/302 (74%)
Frame = +2
Query: 86 RWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSD 265
RW + +V +L +KYVFITGCDSGFGNLLA+QL RG++VLAAC TE+G+Q+L++ TS
Sbjct: 12 RWFKNCNLVGNLSEKYVFITGCDSGFGNLLAKQLVDRGMQVLAACFTEEGSQKLQRDTSY 71
Query: 266 RLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILD 445
RL+T LLDVTK+ES+ AA +WV+++VG++GLW LVNNAG+ + S PNEWLTK DFVK+++
Sbjct: 72 RLQTTLLDVTKSESIKAAAQWVRDKVGEQGLWALVNNAGVGLPSGPNEWLTKDDFVKVIN 131
Query: 446 VNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELS 625
VNL+G+++VTL +LP+V++ RGRVVN+SS GRV++ GGGYC+SK+GVEAFSDS+RREL
Sbjct: 132 VNLVGLIEVTLHMLPMVKRARGRVVNMSSSGGRVAVIGGGYCVSKFGVEAFSDSIRRELY 191
Query: 626 YFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCSMET 805
YFGVKV +IEPG ++T + E + + W + E +D YG+ + + + ++
Sbjct: 192 YFGVKVCIIEPGNYRTAILGKENLESRMRKLWERLPQETRDSYGEDYFRIYTDKLKNIMQ 251
Query: 806 SCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTFLVDLMIYYGAPRPAK 985
+ V + MEHA+ S PR RY+PG DA+L Y+P++ LPT + D ++ PRPA
Sbjct: 252 VAEPRVRDVINSMEHAIVSRSPRIRYNPGLDAKLLYIPLAKLPTPVTDFILSRYLPRPAD 311
Query: 986 AL 991
++
Sbjct: 312 SV 313
>ref|NP_001186700.1| 11-cis retinol dehydrogenase [Homo sapiens].
Length = 318
Score = 318 bits (815), Expect = 5e-87
Identities = 155/300 (51%), Positives = 218/300 (72%), Gaps = 1/300 (0%)
Frame = +2
Query: 95 RERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSDRLE 274
R+RQ + + +VFITGCDSGFG LLA QLD RG RVLA+CLT GA+ L++ S RL
Sbjct: 19 RDRQSLP-ASNAFVFITGCDSGFGRLLALQLDQRGFRVLASCLTPSGAEDLQRVASSRLH 77
Query: 275 TVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILDVNL 454
T LLD+T +SV A +WV+ V + GL+GLVNNAG++ I P WLT+ DF ++L+VN
Sbjct: 78 TTLLDITDPQSVQQAAKWVEMHVKEAGLFGLVNNAGVAGIIGPTPWLTRDDFQRVLNVNT 137
Query: 455 LGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELSYFG 634
+G + VTL LLPL+++ RGRV+N++SV+GR++ GGGYC+SK+G+EAFSDSLRR++++FG
Sbjct: 138 MGPIGVTLALLPLLQQARGRVINITSVLGRLAANGGGYCVSKFGLEAFSDSLRRDVAHFG 197
Query: 635 VKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCS-METSC 811
++V+++EPGFF+T VT E++ + + W + P + YG FL K M C
Sbjct: 198 IRVSIVEPGFFRTPVTNLESLEKTLQACWARLPPATQAHYGGAFLTKYLKMQQRIMNLIC 257
Query: 812 NQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTFLVDLMIYYGAPRPAKAL 991
+ DL+ V+ C+EHALT+ HPRTRYSPGWDA+L +LP SYLP LVD ++ + P+PA+A+
Sbjct: 258 DPDLTKVSRCLEHALTARHPRTRYSPGWDAKLLWLPASYLPASLVDAVLTWVLPKPAQAV 317
>ref|NP_002896.2| 11-cis retinol dehydrogenase [Homo sapiens].
Length = 318
Score = 318 bits (815), Expect = 5e-87
Identities = 155/300 (51%), Positives = 218/300 (72%), Gaps = 1/300 (0%)
Frame = +2
Query: 95 RERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSDRLE 274
R+RQ + + +VFITGCDSGFG LLA QLD RG RVLA+CLT GA+ L++ S RL
Sbjct: 19 RDRQSLP-ASNAFVFITGCDSGFGRLLALQLDQRGFRVLASCLTPSGAEDLQRVASSRLH 77
Query: 275 TVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILDVNL 454
T LLD+T +SV A +WV+ V + GL+GLVNNAG++ I P WLT+ DF ++L+VN
Sbjct: 78 TTLLDITDPQSVQQAAKWVEMHVKEAGLFGLVNNAGVAGIIGPTPWLTRDDFQRVLNVNT 137
Query: 455 LGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELSYFG 634
+G + VTL LLPL+++ RGRV+N++SV+GR++ GGGYC+SK+G+EAFSDSLRR++++FG
Sbjct: 138 MGPIGVTLALLPLLQQARGRVINITSVLGRLAANGGGYCVSKFGLEAFSDSLRRDVAHFG 197
Query: 635 VKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCS-METSC 811
++V+++EPGFF+T VT E++ + + W + P + YG FL K M C
Sbjct: 198 IRVSIVEPGFFRTPVTNLESLEKTLQACWARLPPATQAHYGGAFLTKYLKMQQRIMNLIC 257
Query: 812 NQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTFLVDLMIYYGAPRPAKAL 991
+ DL+ V+ C+EHALT+ HPRTRYSPGWDA+L +LP SYLP LVD ++ + P+PA+A+
Sbjct: 258 DPDLTKVSRCLEHALTARHPRTRYSPGWDAKLLWLPASYLPASLVDAVLTWVLPKPAQAV 317
>ref|NP_001135743.1| dehydrogenase/reductase SDR family member 9 precursor [Homo
sapiens].
Length = 319
Score = 311 bits (797), Expect = 6e-85
Identities = 145/291 (49%), Positives = 207/291 (71%), Gaps = 1/291 (0%)
Frame = +2
Query: 89 WQRERQV-VSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSD 265
W R+ ++ + + DKY+FITGCDSGFGNL AR D +G V+AACLTE G+ L+ +TS+
Sbjct: 16 WTRKGKLKIEDITDKYIFITGCDSGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSE 75
Query: 266 RLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILD 445
RL TVLLDVT E+V +WVK +VG++GLWGL+NNAG+ + AP +WLT +D+ + ++
Sbjct: 76 RLRTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGVPGVLAPTDWLTLEDYREPIE 135
Query: 446 VNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELS 625
VNL G++ VTL +LPLV+K +GRV+NVSSV GR+++ GGGY SKY VE F+DSLRR++
Sbjct: 136 VNLFGLISVTLNMLPLVKKAQGRVINVSSVGGRLAIVGGGYTPSKYAVEGFNDSLRRDMK 195
Query: 626 YFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCSMET 805
FGV V+ IEPG FKTN+ P + + W Q SP+IK YG+ ++ + ++
Sbjct: 196 AFGVHVSCIEPGLFKTNLADPVKVIEKKLAIWEQLSPDIKQQYGEGYIEKSLDKLKGNKS 255
Query: 806 SCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTFLVDLMI 958
N DLS V +CM+HALTS P+T Y+ G DA++F++P+S++P L D ++
Sbjct: 256 YVNMDLSPVVECMDHALTSLFPKTHYAAGKDAKIFWIPLSHMPAALQDFLL 306
>ref|NP_954674.1| dehydrogenase/reductase SDR family member 9 precursor [Homo
sapiens].
Length = 319
Score = 311 bits (797), Expect = 6e-85
Identities = 145/291 (49%), Positives = 207/291 (71%), Gaps = 1/291 (0%)
Frame = +2
Query: 89 WQRERQV-VSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSD 265
W R+ ++ + + DKY+FITGCDSGFGNL AR D +G V+AACLTE G+ L+ +TS+
Sbjct: 16 WTRKGKLKIEDITDKYIFITGCDSGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSE 75
Query: 266 RLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILD 445
RL TVLLDVT E+V +WVK +VG++GLWGL+NNAG+ + AP +WLT +D+ + ++
Sbjct: 76 RLRTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGVPGVLAPTDWLTLEDYREPIE 135
Query: 446 VNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELS 625
VNL G++ VTL +LPLV+K +GRV+NVSSV GR+++ GGGY SKY VE F+DSLRR++
Sbjct: 136 VNLFGLISVTLNMLPLVKKAQGRVINVSSVGGRLAIVGGGYTPSKYAVEGFNDSLRRDMK 195
Query: 626 YFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCSMET 805
FGV V+ IEPG FKTN+ P + + W Q SP+IK YG+ ++ + ++
Sbjct: 196 AFGVHVSCIEPGLFKTNLADPVKVIEKKLAIWEQLSPDIKQQYGEGYIEKSLDKLKGNKS 255
Query: 806 SCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTFLVDLMI 958
N DLS V +CM+HALTS P+T Y+ G DA++F++P+S++P L D ++
Sbjct: 256 YVNMDLSPVVECMDHALTSLFPKTHYAAGKDAKIFWIPLSHMPAALQDFLL 306
>ref|NP_001135742.1| dehydrogenase/reductase SDR family member 9 precursor [Homo
sapiens].
Length = 319
Score = 311 bits (797), Expect = 6e-85
Identities = 145/291 (49%), Positives = 207/291 (71%), Gaps = 1/291 (0%)
Frame = +2
Query: 89 WQRERQV-VSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSD 265
W R+ ++ + + DKY+FITGCDSGFGNL AR D +G V+AACLTE G+ L+ +TS+
Sbjct: 16 WTRKGKLKIEDITDKYIFITGCDSGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSE 75
Query: 266 RLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILD 445
RL TVLLDVT E+V +WVK +VG++GLWGL+NNAG+ + AP +WLT +D+ + ++
Sbjct: 76 RLRTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGVPGVLAPTDWLTLEDYREPIE 135
Query: 446 VNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELS 625
VNL G++ VTL +LPLV+K +GRV+NVSSV GR+++ GGGY SKY VE F+DSLRR++
Sbjct: 136 VNLFGLISVTLNMLPLVKKAQGRVINVSSVGGRLAIVGGGYTPSKYAVEGFNDSLRRDMK 195
Query: 626 YFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCSMET 805
FGV V+ IEPG FKTN+ P + + W Q SP+IK YG+ ++ + ++
Sbjct: 196 AFGVHVSCIEPGLFKTNLADPVKVIEKKLAIWEQLSPDIKQQYGEGYIEKSLDKLKGNKS 255
Query: 806 SCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTFLVDLMI 958
N DLS V +CM+HALTS P+T Y+ G DA++F++P+S++P L D ++
Sbjct: 256 YVNMDLSPVVECMDHALTSLFPKTHYAAGKDAKIFWIPLSHMPAALQDFLL 306
>ref|NP_005762.2| dehydrogenase/reductase SDR family member 9 precursor [Homo
sapiens].
Length = 319
Score = 311 bits (797), Expect = 6e-85
Identities = 145/291 (49%), Positives = 207/291 (71%), Gaps = 1/291 (0%)
Frame = +2
Query: 89 WQRERQV-VSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSD 265
W R+ ++ + + DKY+FITGCDSGFGNL AR D +G V+AACLTE G+ L+ +TS+
Sbjct: 16 WTRKGKLKIEDITDKYIFITGCDSGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSE 75
Query: 266 RLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILD 445
RL TVLLDVT E+V +WVK +VG++GLWGL+NNAG+ + AP +WLT +D+ + ++
Sbjct: 76 RLRTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGVPGVLAPTDWLTLEDYREPIE 135
Query: 446 VNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELS 625
VNL G++ VTL +LPLV+K +GRV+NVSSV GR+++ GGGY SKY VE F+DSLRR++
Sbjct: 136 VNLFGLISVTLNMLPLVKKAQGRVINVSSVGGRLAIVGGGYTPSKYAVEGFNDSLRRDMK 195
Query: 626 YFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCSMET 805
FGV V+ IEPG FKTN+ P + + W Q SP+IK YG+ ++ + ++
Sbjct: 196 AFGVHVSCIEPGLFKTNLADPVKVIEKKLAIWEQLSPDIKQQYGEGYIEKSLDKLKGNKS 255
Query: 806 SCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTFLVDLMI 958
N DLS V +CM+HALTS P+T Y+ G DA++F++P+S++P L D ++
Sbjct: 256 YVNMDLSPVVECMDHALTSLFPKTHYAAGKDAKIFWIPLSHMPAALQDFLL 306
>ref|NP_976060.1| D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Homo
sapiens].
Length = 343
Score = 185 bits (470), Expect = 5e-47
Identities = 118/291 (40%), Positives = 170/291 (58%), Gaps = 13/291 (4%)
Frame = +2
Query: 128 KYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQ----GAQQLRKQTSDRLETVLLDVT 295
K V +TGCDSGFG LA+ L +G V A CL + G ++L SDRL TV L+V
Sbjct: 56 KAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQLNVC 115
Query: 296 KTESVAAAKEWVKERVGD--RGLWGLVNNAGISVISAPNEWLTKQDFVKILDVNLLGMVD 469
+E V E V+ + D +G+WGLVNNAGIS E+ + + + ++ +VNL G V
Sbjct: 116 SSEEVEKVVEIVRSSLKDPEKGMWGLVNNAGISTFGEV-EFTSLETYKQVAEVNLWGTVR 174
Query: 470 VTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGG-YCLSKYGVEAFSDSLRRELSYFGVKVA 646
+T LPL+R+ +GRVVN+SS++GR++ YC++K+GVEAFSD LR E+ GVKV+
Sbjct: 175 MTKSFLPLIRRAKGRVVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPLGVKVS 234
Query: 647 MIEPGFF--KTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCSMETSCNQ- 817
++EPG F T++ PE+I K W + ++ YG + ++ + MET C+
Sbjct: 235 VVEPGNFIAATSLYSPESIQAIAKKMWEELPEVVRKDYGKKYF---DEKIAKMETYCSSG 291
Query: 818 --DLSLVTDCMEHALTSCHPRTRYSP-GWDAQLFYLPMSYLPTFLVDLMIY 961
D S V D + HALT+ P TRY P + L M++LP + D MIY
Sbjct: 292 STDTSPVIDAVTHALTATTPYTRYHPMDYYWWLRMQIMTHLPGAISD-MIY 341
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,854,889
Number of extensions: 1134429
Number of successful extensions: 5236
Number of sequences better than 1.0e-05: 53
Number of HSP's gapped: 5140
Number of HSP's successfully gapped: 53
Length of query: 338
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 235
Effective length of database: 14,901,872
Effective search space: 3501939920
Effective search space used: 3501939920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012374
(1014 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 702 0.0
Sscrofa_Chr02 117 1e-23
>Sscrofa_Chr05
|| Length = 111506441
Score = 702 bits (354), Expect = 0.0
Identities = 354/354 (100%)
Strand = Plus / Minus
Query: 1 gtctgaccccagcctgtctgtttctgtcccccgcaaagccatgtgggtgtacctggcggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24139043 gtctgaccccagcctgtctgtttctgtcccccgcaaagccatgtgggtgtacctggcggt 24138984
Query: 61 cctcgtgggcctgtactacctcctgcgctggcagcgggagaggcaggtggtgagccacct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24138983 cctcgtgggcctgtactacctcctgcgctggcagcgggagaggcaggtggtgagccacct 24138924
Query: 121 gagggacaagtatgtcttcatcacgggctgtgactcgggcttcgggaacctgctggccag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24138923 gagggacaagtatgtcttcatcacgggctgtgactcgggcttcgggaacctgctggccag 24138864
Query: 181 gcagctggacctgcggggcttgagggtcctggctgcatgtctgacggagcagggggccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24138863 gcagctggacctgcggggcttgagggtcctggctgcatgtctgacggagcagggggccca 24138804
Query: 241 gcagctgaggaagcagacgtcagacaggctggagacggtgctcctggacgtgaccaagac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24138803 gcagctgaggaagcagacgtcagacaggctggagacggtgctcctggacgtgaccaagac 24138744
Query: 301 agagagcgtcgctgcggccaaggagtgggtgaaggagcgtgtgggggacagagg 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24138743 agagagcgtcgctgcggccaaggagtgggtgaaggagcgtgtgggggacagagg 24138690
Score = 686 bits (346), Expect = 0.0
Identities = 352/354 (99%)
Strand = Plus / Plus
Query: 1 gtctgaccccagcctgtctgtttctgtcccccgcaaagccatgtgggtgtacctggcggt 60
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 24089403 gtctgaccccagcctgtctgtttctgtcccccgcaaagccatgtggctgtacctggtggt 24089462
Query: 61 cctcgtgggcctgtactacctcctgcgctggcagcgggagaggcaggtggtgagccacct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24089463 cctcgtgggcctgtactacctcctgcgctggcagcgggagaggcaggtggtgagccacct 24089522
Query: 121 gagggacaagtatgtcttcatcacgggctgtgactcgggcttcgggaacctgctggccag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24089523 gagggacaagtatgtcttcatcacgggctgtgactcgggcttcgggaacctgctggccag 24089582
Query: 181 gcagctggacctgcggggcttgagggtcctggctgcatgtctgacggagcagggggccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24089583 gcagctggacctgcggggcttgagggtcctggctgcatgtctgacggagcagggggccca 24089642
Query: 241 gcagctgaggaagcagacgtcagacaggctggagacggtgctcctggacgtgaccaagac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24089643 gcagctgaggaagcagacgtcagacaggctggagacggtgctcctggacgtgaccaagac 24089702
Query: 301 agagagcgtcgctgcggccaaggagtgggtgaaggagcgtgtgggggacagagg 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24089703 agagagcgtcgctgcggccaaggagtgggtgaaggagcgtgtgggggacagagg 24089756
Score = 670 bits (338), Expect = 0.0
Identities = 350/354 (98%)
Strand = Plus / Plus
Query: 1 gtctgaccccagcctgtctgtttctgtcccccgcaaagccatgtgggtgtacctggcggt 60
|||| |||||||||||||||||||||||||| |||||||||||||| ||||||||| |||
Sbjct: 24100703 gtcttaccccagcctgtctgtttctgtcccctgcaaagccatgtggctgtacctggtggt 24100762
Query: 61 cctcgtgggcctgtactacctcctgcgctggcagcgggagaggcaggtggtgagccacct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24100763 cctcgtgggcctgtactacctcctgcgctggcagcgggagaggcaggtggtgagccacct 24100822
Query: 121 gagggacaagtatgtcttcatcacgggctgtgactcgggcttcgggaacctgctggccag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24100823 gagggacaagtatgtcttcatcacgggctgtgactcgggcttcgggaacctgctggccag 24100882
Query: 181 gcagctggacctgcggggcttgagggtcctggctgcatgtctgacggagcagggggccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24100883 gcagctggacctgcggggcttgagggtcctggctgcatgtctgacggagcagggggccca 24100942
Query: 241 gcagctgaggaagcagacgtcagacaggctggagacggtgctcctggacgtgaccaagac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24100943 gcagctgaggaagcagacgtcagacaggctggagacggtgctcctggacgtgaccaagac 24101002
Query: 301 agagagcgtcgctgcggccaaggagtgggtgaaggagcgtgtgggggacagagg 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24101003 agagagcgtcgctgcggccaaggagtgggtgaaggagcgtgtgggggacagagg 24101056
Score = 577 bits (291), Expect = e-162
Identities = 303/307 (98%)
Strand = Plus / Minus
Query: 48 tgtacctggcggtcctcgtgggcctgtactacctcctgcgctggcagcgggagaggcagg 107
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24131799 tgtacctggcagtcctcgtgggcctgtactacctcctgcgctggcagcgggagaggcagg 24131740
Query: 108 tggtgagccacctgagggacaagtatgtcttcatcacgggctgtgactcgggcttcggga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24131739 tggtgagccacctgagggacaagtatgtcttcatcacgggctgtgactcgggcttcggga 24131680
Query: 168 acctgctggccaggcagctggacctgcggggcttgagggtcctggctgcatgtctgacgg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24131679 acctgctggccaggcagctggacctgcggggcttgagggtcctggctgcatgtctgacgg 24131620
Query: 228 agcagggggcccagcagctgaggaagcagacgtcagacaggctggagacggtgctcctgg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24131619 agcagggggcccagcagctgaggaagcagacgtcagacaggctggagacggtgctcctgg 24131560
Query: 288 acgtgaccaagacagagagcgtcgctgcggccaaggagtgggtgaaggagcgtgtggggg 347
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 24131559 acgtgaccaagacagagagcgtcgctgcagccaaggagtgggtgaaggagtatgtggggg 24131500
Query: 348 acagagg 354
|||||||
Sbjct: 24131499 acagagg 24131493
Score = 519 bits (262), Expect = e-145
Identities = 262/262 (100%)
Strand = Plus / Minus
Query: 352 aggactctggggcctggtgaacaatgctggcatctccgtaatctctgctcccaatgagtg 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24136267 aggactctggggcctggtgaacaatgctggcatctccgtaatctctgctcccaatgagtg 24136208
Query: 412 gctgaccaaacaggacttcgtgaagatattggatgtgaacctgttggggatggtcgacgt 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24136207 gctgaccaaacaggacttcgtgaagatattggatgtgaacctgttggggatggtcgacgt 24136148
Query: 472 gaccctgcagctgctgcccctcgtgaggaagaccaggggccgtgtggtcaacgtctccag 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24136147 gaccctgcagctgctgcccctcgtgaggaagaccaggggccgtgtggtcaacgtctccag 24136088
Query: 532 tgtcatgggccgggtgtccctctttggcggcggctactgcctgtccaagtacggtgttga 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24136087 tgtcatgggccgggtgtccctctttggcggcggctactgcctgtccaagtacggtgttga 24136028
Query: 592 ggccttctcagactccctcagg 613
||||||||||||||||||||||
Sbjct: 24136027 ggccttctcagactccctcagg 24136006
Score = 464 bits (234), Expect = e-128
Identities = 237/238 (99%)
Strand = Plus / Minus
Query: 777 gtgagaaagcagtttgctcaatggagacaagttgcaatcaggatctctccttggtgactg 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24133880 gtgagaaagcagtttgctcaatggagacaagttgcaatcaggatctctccttggtgactg 24133821
Query: 837 actgcatggagcacgccctgacctcctgccacccccgcacgcgatactcacctggctggg 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24133820 actgcatggagcacgccctgacctcctgccacccccgcacgcgatactcacctggctggg 24133761
Query: 897 acgcccagctcttctacctccccatgagctacttgcccaccttcctcgtggatctcatga 956
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24133760 acgccaagctcttctacctccccatgagctacttgcccaccttcctcgtggatctcatga 24133701
Query: 957 tatactatggtgcccctaggcctgctaaggccctgtaacccaaactggggtacatggt 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24133700 tatactatggtgcccctaggcctgctaaggccctgtaacccaaactggggtacatggt 24133643
Score = 452 bits (228), Expect = e-124
Identities = 294/316 (93%)
Strand = Plus / Minus
Query: 39 ccatgtgggtgtacctggcggtcctcgtgggcctgtactacctcctgcgctggcagcggg 98
|||||||| |||||||||| |||||||||||||||||||||||||| |||||| | ||||
Sbjct: 23785636 ccatgtggctgtacctggctgtcctcgtgggcctgtactacctccttcgctggtaccggg 23785577
Query: 99 agaggcaggtggtgagccacctgagggacaagtatgtcttcatcacgggctgtgactcgg 158
| |||||| |||| |||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 23785576 aaaggcagatggttagccaccttggggataagtatgtcttcatcacgggctgtgactcgg 23785517
Query: 159 gcttcgggaacctgctggccaggcagctggacctgcggggcttgagggtcctggctgcat 218
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 23785516 gcttcgggaacctgctggccaggcagctggatgtgaggggcttgagggtcctggctgcat 23785457
Query: 219 gtctgacggagcagggggcccagcagctgaggaagcagacgtcagacaggctggagacgg 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23785456 gtctgacggagcagggggcccagcagctgaggaagcagacgtcagacaggctggagacgg 23785397
Query: 279 tgctcctggacgtgaccaagacagagagcgtcgctgcggccaaggagtgggtgaaggagc 338
||||| ||||||||||||||||||||||| | ||||| |||| |||||||||||||||
Sbjct: 23785396 tgctcttggacgtgaccaagacagagagcattgctgcagccacccagtgggtgaaggagc 23785337
Query: 339 gtgtgggggacagagg 354
|||| |||||||||||
Sbjct: 23785336 gtgtcggggacagagg 23785321
Score = 385 bits (194), Expect = e-104
Identities = 245/262 (93%)
Strand = Plus / Plus
Query: 352 aggactctggggcctggtgaacaatgctggcatctccgtaatctctgctcccaatgagtg 411
||||||||||||||||||||||||||||||||| | | | | ||||||||||||||
Sbjct: 24103183 aggactctggggcctggtgaacaatgctggcatttgcatgcccctggctcccaatgagtg 24103242
Query: 412 gctgaccaaacaggacttcgtgaagatattggatgtgaacctgttggggatggtcgacgt 471
||||||||| ||||||||| || ||| |||||||||||||||||||||||||||||||
Sbjct: 24103243 gctgaccaagcaggacttcatggtgatgctggatgtgaacctgttggggatggtcgacgt 24103302
Query: 472 gaccctgcagctgctgcccctcgtgaggaagaccaggggccgtgtggtcaacgtctccag 531
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 24103303 gaccctgcagctgctgcccctcgtgaggaagaccaagggccgtgtggtcaacgtctccag 24103362
Query: 532 tgtcatgggccgggtgtccctctttggcggcggctactgcctgtccaagtacggtgttga 591
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 24103363 tgtcatgggccgggtgtccctctttggcggcggctactgcctgtccaagtacggcgttga 24103422
Query: 592 ggccttctcagactccctcagg 613
||||||||||||||||||||||
Sbjct: 24103423 ggccttctcagactccctcagg 24103444
Score = 361 bits (182), Expect = 5e-97
Identities = 242/262 (92%)
Strand = Plus / Plus
Query: 352 aggactctggggcctggtgaacaatgctggcatctccgtaatctctgctcccaatgagtg 411
|||||||||||||||||||||||| |||||||| | | | ||||||| ||||||
Sbjct: 24091895 aggactctggggcctggtgaacaacgctggcatttgcacgcccctggctcccagtgagtg 24091954
Query: 412 gctgaccaaacaggacttcgtgaagatattggatgtgaacctgttggggatggtcgacgt 471
||||||||| ||||||||| || ||| |||||||||||||||||||||||||||||||
Sbjct: 24091955 gctgaccaagcaggacttcatggtgatgctggatgtgaacctgttggggatggtcgacgt 24092014
Query: 472 gaccctgcagctgctgcccctcgtgaggaagaccaggggccgtgtggtcaacgtctccag 531
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 24092015 gaccctgcagctgctgcccctcgtgaggaagaccaagggccgtgtggtcaacgtctccag 24092074
Query: 532 tgtcatgggccgggtgtccctctttggcggcggctactgcctgtccaagtacggtgttga 591
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 24092075 tgtcatgggccgggtgtccctctttggcggcggctactgcctgtccaagtacggcgttga 24092134
Query: 592 ggccttctcagactccctcagg 613
||||||||||||||||||||||
Sbjct: 24092135 ggccttctcagactccctcagg 24092156
Score = 345 bits (174), Expect = 3e-92
Identities = 192/198 (96%)
Strand = Plus / Plus
Query: 1 gtctgaccccagcctgtctgtttctgtcccccgcaaagccatgtgggtgtacctggcggt 60
|||| |||||||||||||||||||||||||| |||||||||||||| ||||||||| |||
Sbjct: 24097610 gtcttaccccagcctgtctgtttctgtcccctgcaaagccatgtggctgtacctggtggt 24097669
Query: 61 cctcgtgggcctgtactacctcctgcgctggcagcgggagaggcaggtggtgagccacct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24097670 cctcgtgggcctgtactacctcctgcgctggcagcgggagaggcaggtggtgagccacct 24097729
Query: 121 gagggacaagtatgtcttcatcacgggctgtgactcgggcttcgggaacctgctggccag 180
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 24097730 gagggacaagtatgtcctcatcacgggctgtgactcggccttcgggaacctgctggccag 24097789
Query: 181 gcagctggacctgcgggg 198
||||||||||||||||||
Sbjct: 24097790 gcagctggacctgcgggg 24097807
Score = 341 bits (172), Expect = 5e-91
Identities = 172/172 (100%)
Strand = Plus / Minus
Query: 610 caggagggagctctcctactttggggtgaaggtggctatgattgagcccggtttcttcaa 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24134577 caggagggagctctcctactttggggtgaaggtggctatgattgagcccggtttcttcaa 24134518
Query: 670 gaccaatgtaaccaaacctgaggcaatttctcagggctacaagacagcatggaatcaggc 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24134517 gaccaatgtaaccaaacctgaggcaatttctcagggctacaagacagcatggaatcaggc 24134458
Query: 730 cagcccagagatcaaggatctctatggggacacattcctggccttatgtgag 781
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24134457 cagcccagagatcaaggatctctatggggacacattcctggccttatgtgag 24134406
Score = 323 bits (163), Expect = 1e-85
Identities = 214/231 (92%)
Strand = Plus / Minus
Query: 124 ggacaagtatgtcttcatcacgggctgtgactcgggcttcgggaacctgctggccaggca 183
|||||| ||||||||||||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 23894206 ggacaaatatgtcttcatcacgggctgtgacttaggctttgggaatctgctggccaggca 23894147
Query: 184 gctggacctgcggggcttgagggtcctggctgcatgtctgacggagcagggggcccagca 243
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 23894146 gctggacctgcggggcttgaaggtcctggctgcatgtctgacagagcagggggcccagca 23894087
Query: 244 gctgaggaagcagacgtcagacaggctggagacggtgctcctggacgtgaccaagacaga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23894086 gctgaggaagcagacgtcagacaggctggagacggtgctcctggacgtgaccaagacaga 23894027
Query: 304 gagcgtcgctgcggccaaggagtgggtgaaggagcgtgtgggggacagagg 354
|||||| | ||| |||| |||||| ||||||| |||||| ||||||||
Sbjct: 23894026 gagcgttgttgcagccactcagtgggaaaaggagcatgtgggagacagagg 23893976
Score = 295 bits (149), Expect = 2e-77
Identities = 167/173 (96%)
Strand = Plus / Plus
Query: 827 ttggtgactgactgcatggagcacgccctgacctcctgccacccccgcacgcgatactca 886
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24105186 ttggtgaccaactgcatggagcacgccctgacctcctgccacccccgcacgcgatactca 24105245
Query: 887 cctggctgggacgcccagctcttctacctccccatgagctacttgcccaccttcctcgtg 946
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 24105246 cctggctgggacgccaagttcttctacctccccatgagctacttgcccaccttcctcgtg 24105305
Query: 947 gatctcatgatatactatggtgcccctaggcctgctaaggccctgtaacccaa 999
||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 24105306 gatctcatgatgtactatggtgcccctaggcctgctaaggtcctgtaacccaa 24105358
Score = 272 bits (137), Expect = 3e-70
Identities = 164/173 (94%)
Strand = Plus / Plus
Query: 827 ttggtgactgactgcatggagcacgccctgacctcctgccacccccgcacgcgatactca 886
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24093901 ttggtgaccaactgcatggagcacgccctgacctcctgccacccccgcacgcgatactca 24093960
Query: 887 cctggctgggacgcccagctcttctacctccccatgagctacttgcccaccttcctcgtg 946
||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 24093961 cctggctgggacgccaagttcttctacctccccatgagctacttgcccaccttcctcatg 24094020
Query: 947 gatctcatgatatactatggtgcccctaggcctgctaaggccctgtaacccaa 999
||||||||||| | ||||||||||||||||||||||||| ||||||||||||
Sbjct: 24094021 gatctcatgatgtgttatggtgcccctaggcctgctaaggtcctgtaacccaa 24094073
Score = 256 bits (129), Expect = 2e-65
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 226 ggagcagggggcccagcagctgaggaagcagacgtcagacaggctggagacggtgctcct 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24097806 ggagcagggggcccagcagctgaggaagcagacgtcagacaggctggagacggtgctcct 24097865
Query: 286 ggacgtgaccaagacagagagcgtcgctgcggccaaggagtgggtgaaggagcgtgtggg 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24097866 ggacgtgaccaagacagagagcgtcgctgcggccaaggagtgggtgaaggagcgtgtggg 24097925
Query: 346 ggacagagg 354
|||||||||
Sbjct: 24097926 ggacagagg 24097934
Score = 101 bits (51), Expect = 7e-19
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 610 caggagggagctctcctactttggggtgaaggtggctatgattgagcccggtttcttcaa 669
|||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct: 24104407 caggagggagctctcctactttggggtgaaggtggctatgatcgagcctggcttcttcat 24104466
Query: 670 gaccaat 676
|||||||
Sbjct: 24104467 gaccaat 24104473
Score = 97.6 bits (49), Expect = 1e-17
Identities = 61/65 (93%)
Strand = Plus / Minus
Query: 124 ggacaagtatgtcttcatcacgggctgtgactcgggcttcgggaacctgctggccaggca 183
||||||||||||||| ||||||||||||||||||||||| || ||||| |||||||||||
Sbjct: 24125271 ggacaagtatgtctttatcacgggctgtgactcgggctttggaaacctcctggccaggca 24125212
Query: 184 gctgg 188
|||||
Sbjct: 24125211 gctgg 24125207
Score = 93.7 bits (47), Expect = 2e-16
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 610 caggagggagctctcctactttggggtgaaggtggctatgattgagcccggtttcttcaa 669
||||||||||||||||||||||||||||||||||||| |||| ||||| || |||||||
Sbjct: 24093119 caggagggagctctcctactttggggtgaaggtggctgtgatcgagcctggcttcttcat 24093178
Query: 670 gaccaat 676
|||||||
Sbjct: 24093179 gaccaat 24093185
>Sscrofa_Chr02
|| Length = 162569375
Score = 117 bits (59), Expect = 1e-23
Identities = 119/139 (85%)
Strand = Plus / Plus
Query: 861 cctgccacccccgcacgcgatactcacctggctgggacgcccagctcttctacctcccca 920
||||||||||| | || ||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 59223391 cctgccacccctgtacctgatactcacctggctgggatgccgggctcttctacctcccca 59223450
Query: 921 tgagctacttgcccaccttcctcgtggatctcatgatatactatggtgcccctaggcctg 980
||| ||| ||| ||||||||| |||||||||||||| | ||||||||| || |||
Sbjct: 59223451 tgaactatctgctcaccttcctggtggatctcatgatggtccgtggtgccccaagacctt 59223510
Query: 981 ctaaggccctgtaacccaa 999
|||||||||||||||||||
Sbjct: 59223511 ctaaggccctgtaacccaa 59223529
Score = 97.6 bits (49), Expect = 1e-17
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 612 ggagggagctctcctactttggggtgaaggtggctatgattgagcccggtttcttcaaga 671
||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||| ||
Sbjct: 59223142 ggagggagctctcctacttcggggtgaaggtggctatgagtgagcctggtttcttcatga 59223201
Query: 672 ccaat 676
|||||
Sbjct: 59223202 ccaat 59223206
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,857,772
Number of extensions: 164
Number of successful extensions: 164
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 25
Length of query: 1014
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 993
Effective length of database: 2,808,413,156
Effective search space: 2788754263908
Effective search space used: 2788754263908
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)