Animal-Genome cDNA 20110601C-012374


Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012374
         (1014 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_531641.2| PREDICTED: similar to microsomal NAD+-dependent...   487   e-138
Alignment   gi|XP_858182.1| PREDICTED: similar to microsomal NAD+-dependent...   474   e-134
Alignment   gi|XP_538239.2| PREDICTED: similar to 3-hydroxysteroid epimeras...   401   e-112
Alignment   gi|XP_858059.1| PREDICTED: similar to 3-hydroxysteroid epimeras...   397   e-111
Alignment   gi|XP_538240.2| PREDICTED: similar to orphan short-chain dehydr...   350   9e-97
Alignment   gi|XP_538220.2| PREDICTED: similar to 11-cis retinol dehydrogen...   325   6e-89
Alignment   gi|XP_545513.2| PREDICTED: similar to NADP-dependent retinol de...   309   2e-84
Alignment   gi|XP_545160.2| PREDICTED: similar to 3-hydroxybutyrate dehydro...   181   8e-46
Alignment   gi|XP_546810.2| PREDICTED: similar to hydroxysteroid (17-beta) ...   170   2e-42
Alignment   gi|XP_853935.1| PREDICTED: similar to Corticosteroid 11-beta-de...   139   3e-33

>ref|XP_531641.2| PREDICTED: similar to microsomal NAD+-dependent retinol
           dehydrogenase 4 isoform 1 [Canis familiaris].
          Length = 317

 Score =  487 bits (1253), Expect = e-138
 Identities = 233/317 (73%), Positives = 271/317 (85%)
 Frame = +2

Query: 41  MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
           MW             RW RERQVVSHL+DKYVFITGCDSGFGNLLARQLDLRGLRVLAAC
Sbjct: 1   MWWSLAVLVGLYYLLRWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60

Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
           LTE+GAQQLR QTSDRL+TV+LDVTKTES+ AA +WV+E VGDRGLWGLVNNAGIS  +A
Sbjct: 61  LTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEEHVGDRGLWGLVNNAGISWPTA 120

Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 580
           PNEWLTK DF+KILDVNLLG+V+VTL LL LVRK RGRVVNVSS+MGR+SL GGGYC+SK
Sbjct: 121 PNEWLTKDDFMKILDVNLLGLVEVTLSLLSLVRKARGRVVNVSSIMGRLSLCGGGYCISK 180

Query: 581 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 760
           YGVEAFSDSLRREL+YFGVKVA+IEPG+F TNVT PE IS+G++  W++ SPE+++ YG+
Sbjct: 181 YGVEAFSDSLRRELTYFGVKVAVIEPGYFSTNVTNPEKISRGFQETWDRLSPEVREAYGE 240

Query: 761 TFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTF 940
            FLA   K +  +++ C+ +L LVT+CMEHALT+CHPRTRYSPGWDA+L YLPMSYLPT 
Sbjct: 241 EFLASARKPIEKLKSMCDTNLYLVTNCMEHALTACHPRTRYSPGWDAKLLYLPMSYLPTL 300

Query: 941 LVDLMIYYGAPRPAKAL 991
           LVD MIY+ +PRPAKA+
Sbjct: 301 LVDTMIYWNSPRPAKAV 317


>ref|XP_858182.1| PREDICTED: similar to microsomal NAD+-dependent retinol
           dehydrogenase 4 isoform 2 [Canis familiaris].
          Length = 319

 Score =  474 bits (1219), Expect = e-134
 Identities = 230/319 (72%), Positives = 267/319 (83%), Gaps = 2/319 (0%)
 Frame = +2

Query: 41  MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
           MW             RW RERQVVSHL+DKYVFITGCDSGFGNLLARQLDLRGLRVLAAC
Sbjct: 1   MWWSLAVLVGLYYLLRWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60

Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
           LTE+GAQQLR QTSDRL+TV+LDVTKTES+ AA +WV+E VGDRGLWGLVNNAGIS  +A
Sbjct: 61  LTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEEHVGDRGLWGLVNNAGISWPTA 120

Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 580
           PNEWLTK DF+KILDVNLLG+V+VTL LL LVRK RGRVVNVSS+MGR+SL GGGYC+SK
Sbjct: 121 PNEWLTKDDFMKILDVNLLGLVEVTLSLLSLVRKARGRVVNVSSIMGRLSLCGGGYCISK 180

Query: 581 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 760
           YGVEAFSDSLRREL+YFGVKVA+IEPG+F TNVT PE IS+G++  W++ SPE+++ YG+
Sbjct: 181 YGVEAFSDSLRRELTYFGVKVAVIEPGYFSTNVTNPEKISRGFQETWDRLSPEVREAYGE 240

Query: 761 TFLALCEKAVCS--METSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLP 934
                  K      +++ C+ +L LVT+CMEHALT+CHPRTRYSPGWDA+L YLPMSYLP
Sbjct: 241 EHARTPGKLAVKELLKSMCDTNLYLVTNCMEHALTACHPRTRYSPGWDAKLLYLPMSYLP 300

Query: 935 TFLVDLMIYYGAPRPAKAL 991
           T LVD MIY+ +PRPAKA+
Sbjct: 301 TLLVDTMIYWNSPRPAKAV 319


>ref|XP_538239.2| PREDICTED: similar to 3-hydroxysteroid epimerase isoform 3 [Canis
           familiaris].
          Length = 317

 Score =  401 bits (1031), Expect = e-112
 Identities = 193/317 (60%), Positives = 238/317 (75%)
 Frame = +2

Query: 41  MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
           MW             RW RERQVVSHL DKYVFITGCDSGFGNLLARQLDLRGLRVLAAC
Sbjct: 1   MWWSLAVLVGLYCLLRWYRERQVVSHLHDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60

Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
           LTE+GAQQLR QTSDRL+TV+LDVTKTES+ AA +WV+ERVGDRGLWGLVNNAGI     
Sbjct: 61  LTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEERVGDRGLWGLVNNAGIFHPHC 120

Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 580
            +EWL  + +V +  VNL G+++VTL +LPL+R+ RGR+VNVSS++GR++ FGG YC SK
Sbjct: 121 YSEWLKIEAYVDVFKVNLTGLIEVTLSMLPLLRRARGRIVNVSSILGRLAFFGGAYCSSK 180

Query: 581 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 760
           YGVEAFSD+LRREL +FGVK++++EPG+F+T +T      +  K AW +    IK+ YG 
Sbjct: 181 YGVEAFSDTLRRELRHFGVKISIVEPGYFRTGMTHVAWCLERLKQAWEEVPTHIKEAYGQ 240

Query: 761 TFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTF 940
            F       V      C+ +L+LVTDCMEHALTS HPRTRYS GWD+Q F++P+SYLPT 
Sbjct: 241 KFFDAHHNGVKQGLLKCSTNLNLVTDCMEHALTSVHPRTRYSAGWDSQFFFIPLSYLPTS 300

Query: 941 LVDLMIYYGAPRPAKAL 991
           L D ++    P+PA+A+
Sbjct: 301 LADYILTRSWPKPAQAV 317


>ref|XP_858059.1| PREDICTED: similar to 3-hydroxysteroid epimerase isoform 4 [Canis
           familiaris].
          Length = 323

 Score =  397 bits (1020), Expect = e-111
 Identities = 194/323 (60%), Positives = 239/323 (73%), Gaps = 6/323 (1%)
 Frame = +2

Query: 41  MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
           MW             RW RERQVVSHL DKYVFITGCDSGFGNLLARQLDLRGLRVLAAC
Sbjct: 1   MWWSLAVLVGLYCLLRWYRERQVVSHLHDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60

Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
           LTE+GAQQLR QTSDRL+TV+LDVTKTES+ AA +WV+ERVGDRGLWGLVNNAGI     
Sbjct: 61  LTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEERVGDRGLWGLVNNAGIFHPHC 120

Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 580
            +EWL  + +V +  VNL G+++VTL +LPL+R+ RGR+VNVSS++GR++ FGG YC SK
Sbjct: 121 YSEWLKIEAYVDVFKVNLTGLIEVTLSMLPLLRRARGRIVNVSSILGRLAFFGGAYCSSK 180

Query: 581 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 760
           YGVEAFSD+LRREL +FGVK++++EPG+F+T +T      +  K AW +    IK+ YG 
Sbjct: 181 YGVEAFSDTLRRELRHFGVKISIVEPGYFRTGMTHVAWCLERLKQAWEEVPTHIKEAYGQ 240

Query: 761 TFLA------LCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPM 922
            F A           V      C+ +L+LVTDCMEHALTS HPRTRYS GWD+Q F++P+
Sbjct: 241 KFFASFLFLYTDHNGVKQGLLKCSTNLNLVTDCMEHALTSVHPRTRYSAGWDSQFFFIPL 300

Query: 923 SYLPTFLVDLMIYYGAPRPAKAL 991
           SYLPT L D ++    P+PA+A+
Sbjct: 301 SYLPTSLADYILTRSWPKPAQAV 323


>ref|XP_538240.2| PREDICTED: similar to orphan short-chain dehydrogenase / reductase
           [Canis familiaris].
          Length = 313

 Score =  350 bits (899), Expect = 9e-97
 Identities = 169/302 (55%), Positives = 228/302 (75%)
 Frame = +2

Query: 86  RWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSD 265
           RW +   +V +L DKYVFITGCDSGFGNLLARQL  RG+RVLAAC TE+GAQ+L++ TS 
Sbjct: 12  RWLKNCNLVRNLSDKYVFITGCDSGFGNLLARQLVNRGMRVLAACFTEEGAQKLQRDTSY 71

Query: 266 RLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILD 445
           RL+T LLDVT+TES+ AA +WV+++VG++GLW LVNNAGI + S PNEWLTK+DFVK+++
Sbjct: 72  RLQTTLLDVTRTESIQAATQWVRDQVGEQGLWALVNNAGIGLPSGPNEWLTKEDFVKVIN 131

Query: 446 VNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELS 625
           VNL+G+++VTL +LP+V+K RGRVVN+SS  GRV+L GGGYC+SK+GVEAFSDS+RREL 
Sbjct: 132 VNLVGLIEVTLHMLPMVKKARGRVVNMSSSGGRVALIGGGYCVSKFGVEAFSDSIRRELH 191

Query: 626 YFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCSMET 805
           YFGVKV++IEPG ++T++   E +    +  W +   E KD YG+ +       + +M  
Sbjct: 192 YFGVKVSIIEPGNYRTSILGKEDMVSRMRKLWERLPQETKDSYGEEYFRNYTDKLKNMMQ 251

Query: 806 SCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTFLVDLMIYYGAPRPAK 985
           S    +  VT+ MEHA+ S  PR RY+PG DA+L YLP++ LPT + D ++    PRPA 
Sbjct: 252 SAEPRIREVTNSMEHAIVSRSPRVRYNPGLDAKLLYLPLAKLPTPVTDFILSRYLPRPAD 311

Query: 986 AL 991
           ++
Sbjct: 312 SV 313


>ref|XP_538220.2| PREDICTED: similar to 11-cis retinol dehydrogenase (11-cis RDH)
           [Canis familiaris].
          Length = 339

 Score =  325 bits (832), Expect = 6e-89
 Identities = 162/319 (50%), Positives = 224/319 (70%), Gaps = 1/319 (0%)
 Frame = +2

Query: 38  AMWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAA 217
           AMW              W R++Q +    D +VFITGCDSGFG LLA +LD RG RVLA+
Sbjct: 21  AMWLPLLLGVLLWAVLWWLRDQQSLP-ASDAFVFITGCDSGFGRLLALRLDQRGFRVLAS 79

Query: 218 CLTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVIS 397
           CLT  GA+ L++  S RL T LLDVT+ +SV  A +WV+  VG+ GL+GLVNNAG++ I 
Sbjct: 80  CLTPAGAEDLQRVASSRLHTTLLDVTEPQSVQRAAKWVETHVGEAGLFGLVNNAGVAGII 139

Query: 398 APNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLS 577
            P  WLT+ DF ++L+VN LG + VTL LLPL++++RGRVVN+SSV+GR++  GGGYC+S
Sbjct: 140 GPTPWLTQDDFHRVLNVNTLGPIRVTLALLPLLQQSRGRVVNISSVLGRLAANGGGYCVS 199

Query: 578 KYGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYG 757
           K+G+EAFSDSLRR++++FGV+V+++EPGFF+T VT  E +    +  W +  P  +  YG
Sbjct: 200 KFGLEAFSDSLRRDVAHFGVRVSIVEPGFFRTPVTNLEHLENTLQECWARLPPSTQAHYG 259

Query: 758 DTFL-ALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLP 934
           + FL    +     M   C+ DL+ V+ C+EHALT+ +PRTRYSPGWDA+L +LP SYLP
Sbjct: 260 EAFLPKYLQVQQHIMSLICDPDLTKVSRCLEHALTARYPRTRYSPGWDAKLLWLPASYLP 319

Query: 935 TFLVDLMIYYGAPRPAKAL 991
             LVD ++ +  P+PA+A+
Sbjct: 320 ASLVDAVLTWVLPKPAQAV 338


>ref|XP_545513.2| PREDICTED: similar to NADP-dependent retinol dehydrogenase/reductase
            [Canis familiaris].
          Length = 753

 Score =  309 bits (792), Expect = 2e-84
 Identities = 144/291 (49%), Positives = 207/291 (71%), Gaps = 1/291 (0%)
 Frame = +2

Query: 89   WQRERQV-VSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSD 265
            W  +RQ+ ++ + DKY+FITGCD+GFGNL AR  D +G  V+AACLTE  +  L+ +TS+
Sbjct: 450  WNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESESTALKAETSE 509

Query: 266  RLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILD 445
            RL TVLLDVT  E+V    +WVK +VG++GLWGL+NNAG+  + AP +WLT +D+ + ++
Sbjct: 510  RLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGVLGVLAPTDWLTVEDYREPIE 569

Query: 446  VNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELS 625
            VNL G++ VTL LLPLV+K RGR++NVSS+ GR+++ GGGY  SKY VE F+DSLRR++ 
Sbjct: 570  VNLFGLISVTLNLLPLVKKARGRIINVSSIGGRLAISGGGYTPSKYAVEGFNDSLRRDMK 629

Query: 626  YFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCSMET 805
             FGV V+ IEPG FKT ++ P   ++     W   SP+IK  YG++++      +    +
Sbjct: 630  AFGVHVSCIEPGLFKTGLSDPIKATEKKLAIWKHLSPDIKQQYGESYIEKSLDKLKDTTS 689

Query: 806  SCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTFLVDLMI 958
              N DLSLV +CM+HALTS  P+TRY+ G DA+ F++P+S++P  L D ++
Sbjct: 690  FVNVDLSLVVECMDHALTSLFPKTRYAAGRDAKTFWIPLSHMPAVLQDFLL 740


>ref|XP_545160.2| PREDICTED: similar to 3-hydroxybutyrate dehydrogenase precursor
           [Canis familiaris].
          Length = 299

 Score =  181 bits (460), Expect = 8e-46
 Identities = 108/273 (39%), Positives = 159/273 (58%), Gaps = 12/273 (4%)
 Frame = +2

Query: 107 VVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQ----GAQQLRKQTSDRLE 274
           ++  +  K V +TGCDSGFG  LA+ L  +G  V A CL +     G ++L    SDRL 
Sbjct: 5   LLKQVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDQGGDGVKELDGLKSDRLR 64

Query: 275 TVLLDVTKTESVAAAKEWVKERVGD--RGLWGLVNNAGISVISAPNEWLTKQDFVKILDV 448
           T+ L+V K E V    E V+  + D  +G+WGLVNNAGIS      E+ + + + ++ +V
Sbjct: 65  TIQLNVCKGEEVERVVEVVRSSLEDPEKGMWGLVNNAGISTFGEV-EFTSMETYKEVAEV 123

Query: 449 NLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRV-SLFGGGYCLSKYGVEAFSDSLRRELS 625
           NL G V +T   LPL+R+ RGR+VN+SS++GR+ +     YC++K+GVEAFSD LR E+ 
Sbjct: 124 NLWGTVQMTKAFLPLIRRARGRIVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMY 183

Query: 626 YFGVKVAMIEPGFF--KTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCSM 799
             GVKV+++EPG F   T++  PE I       W++    ++  YG  +    ++ +  M
Sbjct: 184 PLGVKVSVVEPGNFIAATSLYNPERIQAIADKMWDELPEVVRKDYGRKYF---DEKIARM 240

Query: 800 ETSCNQ---DLSLVTDCMEHALTSCHPRTRYSP 889
           +  CN    D+S V   + HALTS  P TRY P
Sbjct: 241 QAYCNSGSTDISPVVSAVTHALTSRSPYTRYHP 273


>ref|XP_546810.2| PREDICTED: similar to hydroxysteroid (17-beta) dehydrogenase 2
           [Canis familiaris].
          Length = 382

 Score =  170 bits (431), Expect = 2e-42
 Identities = 103/278 (37%), Positives = 158/278 (56%), Gaps = 4/278 (1%)
 Frame = +2

Query: 128 KYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQG--AQQLRKQTSDRLETVLLDVTKT 301
           K V ITG DSGFG+ L++ LD  G  V    L E+G  A++LR+  S RL  + +D+T  
Sbjct: 84  KAVLITGGDSGFGHALSKYLDELGFTVFVGVLDEKGSGAEELRRTCSKRLSVLQMDITDQ 143

Query: 302 ESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILDVNLLGMVDVTLQ 481
           + +  A   V E++ DRGLW +VNNAGI  + A  E +   D+ K + VN  G V+VT  
Sbjct: 144 QQIKDAHSKVVEKLQDRGLWAVVNNAGIICLPADGELIPMTDYKKCMAVNFFGAVEVTKA 203

Query: 482 LLPLVRKTRGRVVNVSSVMGRVSLFG-GGYCLSKYGVEAFSDSLRRELSYFGVKVAMIEP 658
            LPL+RK++GR+VN+SS+   V +     Y  SK  +  FS  +R+ELS +GVKV++I+P
Sbjct: 204 FLPLLRKSKGRLVNISSMAAGVPMEKLAAYSSSKAALTMFSAVMRQELSKWGVKVSVIQP 263

Query: 659 GFFKTNVT-KPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCSMETSCNQDLSLVT 835
           G F+TN+    E  S+  K   +  S ++++ YG  ++      + S+    N D+S V 
Sbjct: 264 GGFRTNIAGTSEMWSKLEKNILDHLSSDVEEDYGKDYILQQRNYLKSINIKTNTDISPVL 323

Query: 836 DCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTFLVD 949
             + HA+++  P   Y+PG  A      +S+ PT + D
Sbjct: 324 QDIRHAVSAKSPFAFYAPGALAYCLLFFVSFSPTGIFD 361


>ref|XP_853935.1| PREDICTED: similar to Corticosteroid 11-beta-dehydrogenase, isozyme
           2 (11-DH2) (11-beta-hydroxysteroid dehydrogenase type 2)
           (11-beta-HSD2) (NAD-dependent 11-beta-hydroxysteroid
           dehydrogenase) [Canis familiaris].
          Length = 323

 Score =  139 bits (351), Expect = 3e-33
 Identities = 100/285 (35%), Positives = 137/285 (48%), Gaps = 9/285 (3%)
 Frame = +2

Query: 149 CDSGFGNLLARQLDLRGLRVLAACLTEQG--AQQLRKQTSDRLETVLLDVTKTESVAAAK 322
           CDSGFG   A++LD  G  VLA  L   G  A +LR   S RL  + +D+TK   ++ A 
Sbjct: 8   CDSGFGKETAKKLDAMGFTVLATVLELDGPGALELRACCSPRLRLLQMDLTKPADISRAL 67

Query: 323 EWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRK 502
           E+ K      GLWGLVNNAG + + A  E      F   ++VN  G +++T  LLPL+R+
Sbjct: 68  EFTKAHTSSTGLWGLVNNAGHNDVVADVELSPVATFRSCMEVNFFGALELTKGLLPLLRR 127

Query: 503 TRGRVVNVSSVMGRVSL-FGGGYCLSKYGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNV 679
           +RGR+V V S  G +       Y  SK  +    D+   EL  +GVKV++I+PG FKT  
Sbjct: 128 SRGRIVTVGSPAGDMPYPCLAAYGTSKAAMALLMDTFSCELLPWGVKVSVIQPGCFKTES 187

Query: 680 TKPEAISQGYKTAWNQASP-EIKDLYGDTFLALCEKAVCSMETSCNQDLSLVTDCMEHAL 856
            +     +  K     + P E+   YG+ ++                DLS V D +  AL
Sbjct: 188 VRNVGHWEQRKQLLLASLPRELLQAYGEDYIEHLHGQFLHSLRLALPDLSPVVDAITDAL 247

Query: 857 TSCHPRTRYSPGWDAQLFYLPMSYLP-----TFLVDLMIYYGAPR 976
            +  PR RY PG    L Y    YLP      FL    I +  PR
Sbjct: 248 LAAQPRRRYYPGRGLGLMYFIHYYLPEGLRRRFLQTFFINHCLPR 292


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,663,064
Number of extensions: 1164548
Number of successful extensions: 5550
Number of sequences better than 1.0e-05: 51
Number of HSP's gapped: 5476
Number of HSP's successfully gapped: 51
Length of query: 338
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 235
Effective length of database: 15,440,896
Effective search space: 3628610560
Effective search space used: 3628610560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012374
         (1014 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001069264.1| retinol dehydrogenase 16 [Bos taurus].            512   e-145
Alignment   gi|NP_001030472.1| 17-beta-hydroxysteroid dehydrogenase type 6 ...   391   e-109
Alignment   gi|NP_001077206.1| short-chain dehydrogenase/reductase family 9...   347   7e-96
Alignment   gi|NP_777158.1| dehydrogenase/reductase SDR family member 9 pre...   322   3e-88
Alignment   gi|NP_776591.2| 11-cis retinol dehydrogenase [Bos taurus].           318   4e-87
Alignment   gi|NP_001029772.1| D-beta-hydroxybutyrate dehydrogenase, mitoch...   178   6e-45
Alignment   gi|NP_001069194.1| estradiol 17-beta-dehydrogenase 2 [Bos tauru...   177   2e-44
Alignment   gi|NP_777067.1| corticosteroid 11-beta-dehydrogenase isozyme 2 ...   145   4e-35
Alignment   gi|XP_002702202.1| PREDICTED: dehydrogenase/reductase SDR famil...    91   1e-18
Alignment   gi|NP_001030420.1| dehydrogenase/reductase SDR family member 7B...    91   2e-18

>ref|NP_001069264.1| retinol dehydrogenase 16 [Bos taurus].
          Length = 317

 Score =  512 bits (1319), Expect = e-145
 Identities = 248/317 (78%), Positives = 280/317 (88%)
 Frame = +2

Query: 41  MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
           MW             RW RERQVVSHLRDK+VFITGCDSGFGNLLARQLDLRGLRVLAAC
Sbjct: 1   MWLYLVVLVGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAAC 60

Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
           LTE+GA+QLR QTSDRL+TV+LDVTKT+SVAAA EWVKERVGDRGLWGLVNNAGIS  +A
Sbjct: 61  LTEKGAEQLRNQTSDRLQTVILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTA 120

Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 580
           PNEWLTKQDF+KILDVNLLG++DVTL +LPLVRK RGRVVNVSS+MGRV+L GGGYC+SK
Sbjct: 121 PNEWLTKQDFMKILDVNLLGVIDVTLSVLPLVRKARGRVVNVSSIMGRVALLGGGYCMSK 180

Query: 581 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 760
           YGVEAFSDSLRRELSYFGVKV MIEPG+FKT VT P+A+SQG++ +WNQASPEIK+LYG+
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVVMIEPGYFKTAVTSPKALSQGFQASWNQASPEIKELYGE 240

Query: 761 TFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTF 940
            F+A   K+V  +ET+  QDLSLVT+CMEHALT+CHPRTRYSPGWDA+  YLPMSYLP+F
Sbjct: 241 KFMANLMKSVDLLETTSCQDLSLVTNCMEHALTACHPRTRYSPGWDAKFIYLPMSYLPSF 300

Query: 941 LVDLMIYYGAPRPAKAL 991
           LVDLM+Y+  PRPAKAL
Sbjct: 301 LVDLMVYWRNPRPAKAL 317


>ref|NP_001030472.1| 17-beta-hydroxysteroid dehydrogenase type 6 precursor [Bos taurus].
          Length = 317

 Score =  391 bits (1004), Expect = e-109
 Identities = 193/317 (60%), Positives = 235/317 (74%)
 Frame = +2

Query: 41  MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
           MW             RW RERQVVSHL+DK+VFITGCDSGFGN LARQLDLRGLRVLA C
Sbjct: 1   MWLYLAVLLGLYYLLRWFRERQVVSHLQDKFVFITGCDSGFGNQLARQLDLRGLRVLAGC 60

Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
           LTEQGA+QLR QTSDRL+TV+LDVTKTES+AAA EWVKE VGDRGLWGLVNNAGI     
Sbjct: 61  LTEQGAEQLRNQTSDRLQTVILDVTKTESIAAATEWVKECVGDRGLWGLVNNAGIFHSHG 120

Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 580
             EW+  + +   L VNL+G+++VTL +LPLVRK +GR+VNVSS++GR++ FG  Y  SK
Sbjct: 121 YAEWIKIETYRDTLRVNLIGVIEVTLSMLPLVRKAQGRIVNVSSILGRIAFFGAVYSCSK 180

Query: 581 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 760
           YGVEAFSD LRREL +FGVKV+M+EPG+F+T +T  +  S+  K  W +    IK+ YG 
Sbjct: 181 YGVEAFSDILRRELQHFGVKVSMVEPGYFRTAMTDWQKFSEIMKQIWKETPAHIKETYGQ 240

Query: 761 TFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTF 940
            F       +     SC+ +L+LVTDCMEHALTS HPRTRYS GWDAQ F++P+SYLPT 
Sbjct: 241 KFFDAYHDLMKQGLLSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFVPLSYLPTS 300

Query: 941 LVDLMIYYGAPRPAKAL 991
           L D ++    P+PA+A+
Sbjct: 301 LADYILTRSWPKPAQAV 317


>ref|NP_001077206.1| short-chain dehydrogenase/reductase family 9C member 7 [Bos
           taurus].
          Length = 313

 Score =  347 bits (891), Expect = 7e-96
 Identities = 164/302 (54%), Positives = 230/302 (76%)
 Frame = +2

Query: 86  RWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSD 265
           RW +   +V +L DKYVFITGCDSGFGNLLARQL  RG+RVLAAC T++GAQ+L++ TS 
Sbjct: 12  RWFKNCNLVRNLSDKYVFITGCDSGFGNLLARQLVDRGMRVLAACFTKEGAQKLQQDTSY 71

Query: 266 RLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILD 445
           +L+T+LLDVTKTES+ AA +WV+++VG++GLW LVNNAG+ + S PNEWLTK+DFVK+++
Sbjct: 72  QLQTILLDVTKTESIKAATQWVRDQVGEQGLWALVNNAGVGLPSGPNEWLTKEDFVKVIN 131

Query: 446 VNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELS 625
           VNL+G+++VTL +LP+V+K RGRVVN+SS  GRV++ GGGYC+SK+GVEAFSDS+RREL 
Sbjct: 132 VNLVGLIEVTLHMLPMVKKARGRVVNMSSSGGRVAVIGGGYCISKFGVEAFSDSIRRELH 191

Query: 626 YFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCSMET 805
           YFGVKV++IEPG F+T +   + + +  +  W +  PE ++ YG+ +  +    + S   
Sbjct: 192 YFGVKVSIIEPGNFRTAILGKDGLEKHMRKLWERLPPETRESYGEEYFRIYTDNLKSTMQ 251

Query: 806 SCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTFLVDLMIYYGAPRPAK 985
             +  +S VT+ MEHA+ S  PR RY+PG DA+L YLP++  PT + D ++    PRPA 
Sbjct: 252 LADPRISEVTNSMEHAIVSRSPRIRYNPGLDAKLLYLPLAKFPTPVTDFILSRYLPRPAD 311

Query: 986 AL 991
           ++
Sbjct: 312 SV 313


>ref|NP_777158.1| dehydrogenase/reductase SDR family member 9 precursor [Bos taurus].
          Length = 319

 Score =  322 bits (826), Expect = 3e-88
 Identities = 150/291 (51%), Positives = 213/291 (73%), Gaps = 1/291 (0%)
 Frame = +2

Query: 89  WQRERQV-VSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSD 265
           W  +RQ+ ++++ DKY+FITGCD+GFGNL AR  D +G  V+AACLTE G+  L+ +TS+
Sbjct: 16  WNYKRQLKIANITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSE 75

Query: 266 RLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILD 445
           RL TVLLDVT  E+V  A +WVK +VG++GLWGL+NNAGI  + APN+WLT +D+ + ++
Sbjct: 76  RLHTVLLDVTDPENVKRAAQWVKNQVGEKGLWGLINNAGILGVLAPNDWLTVEDYREPVE 135

Query: 446 VNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELS 625
           VNL G++ VTL +LPLV+K RGR++NVSS+ GR++  GGGY  SKY VE F+DSLRR++ 
Sbjct: 136 VNLFGLISVTLNMLPLVKKARGRIINVSSIGGRLAFGGGGYSPSKYAVEGFNDSLRRDMK 195

Query: 626 YFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCSMET 805
            FGV VA IEPG FKTN++ PE  ++     W   SP+IK  YG++++    + +    +
Sbjct: 196 AFGVHVACIEPGLFKTNLSDPEKTAEKKLAIWKHLSPDIKQQYGESYIEKSLEQLKGTAS 255

Query: 806 SCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTFLVDLMI 958
             N DLSLV +CM+HALTS  P+TRY+ G DA+ F++P+S++P  L D ++
Sbjct: 256 FVNVDLSLVVECMDHALTSLFPKTRYAAGKDAKTFWIPLSHMPAVLQDFLL 306


>ref|NP_776591.2| 11-cis retinol dehydrogenase [Bos taurus].
          Length = 318

 Score =  318 bits (816), Expect = 4e-87
 Identities = 155/300 (51%), Positives = 216/300 (72%), Gaps = 1/300 (0%)
 Frame = +2

Query: 95  RERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSDRLE 274
           R+RQ +    D ++FITGCDSGFG LLA +LD RG RVLA+CLT  GA+ L++  S RL 
Sbjct: 19  RDRQCLP-ASDAFIFITGCDSGFGRLLALRLDQRGFRVLASCLTPSGAEDLQRVASSRLH 77

Query: 275 TVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILDVNL 454
           T LLDVT  +S+  A +WV+  VG+ GL+GLVNNAG++ I  P  W T++DF ++L+VN 
Sbjct: 78  TTLLDVTDPQSIRQAVKWVETHVGEAGLFGLVNNAGVAGIIGPTPWQTREDFQRVLNVNT 137

Query: 455 LGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELSYFG 634
           LG + VTL LLPL+ + RGRV+N++SV+GR++  GGGYC+SK+G+EAFSDSLRR+++ FG
Sbjct: 138 LGPIGVTLALLPLLLQARGRVINITSVLGRLAANGGGYCVSKFGLEAFSDSLRRDVAPFG 197

Query: 635 VKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCS-METSC 811
           V+V+++EPGFF+T VT  E +    +  W +  P  + LYG+ FL    +     M   C
Sbjct: 198 VRVSIVEPGFFRTPVTNLETLEDTLQACWARLPPATQALYGEAFLTKYLRVQQRIMNMIC 257

Query: 812 NQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTFLVDLMIYYGAPRPAKAL 991
           + DL+ V+ C+EHALT+ HPRTRYSPGWDA+L +LP SYLP  LVD ++ +  P+PA+ +
Sbjct: 258 DPDLAKVSRCLEHALTARHPRTRYSPGWDAKLLWLPASYLPARLVDAVLAWVLPKPAQTV 317


>ref|NP_001029772.1| D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Bos
           taurus].
          Length = 344

 Score =  178 bits (452), Expect = 6e-45
 Identities = 112/273 (41%), Positives = 156/273 (57%), Gaps = 13/273 (4%)
 Frame = +2

Query: 110 VSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQ----GAQQLRKQTSDRLET 277
           V  +  K V ITGCDSGFG  LA+ L   G  V A CL +     G ++L    SDRL T
Sbjct: 50  VDPVGSKAVLITGCDSGFGFSLAKHLHSEGFLVFAGCLMKDKGSDGVKELDSMKSDRLRT 109

Query: 278 VLLDVTKTESVAAAKEWVKERVGD--RGLWGLVNNAGISVISAPNEWLTKQDFVKILDVN 451
           V L+V K+E V  A E ++  + D  +GLWGLVNNAGIS      E+ + + + ++ +VN
Sbjct: 110 VQLNVCKSEEVDKAAEVIRSSLEDPEKGLWGLVNNAGISTFGDV-EFTSMETYKEVAEVN 168

Query: 452 LLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRV-SLFGGGYCLSKYGVEAFSDSLRRELSY 628
           L G V VT   LPL+R+ +GRVVN+SS+MGR+ ++    YC++K+GVEAFSD LR E+  
Sbjct: 169 LWGTVRVTKAFLPLIRRAKGRVVNISSMMGRMANVARSPYCITKFGVEAFSDCLRYEMHP 228

Query: 629 FGVKVAMIEPGFFKTNVT---KPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCSM 799
            GVKV+++EPG F    +     E I       W +    ++  YG  +    ++ V  M
Sbjct: 229 LGVKVSVVEPGNFIAATSLYGGTERIQAIANKMWEELPEVVRQDYGRKYF---DEKVARM 285

Query: 800 ETSC---NQDLSLVTDCMEHALTSCHPRTRYSP 889
           E+ C   + D S V   + HALT+  P TRY P
Sbjct: 286 ESYCTSGSTDTSPVIKAVTHALTATTPYTRYHP 318


>ref|NP_001069194.1| estradiol 17-beta-dehydrogenase 2 [Bos taurus].
          Length = 388

 Score =  177 bits (448), Expect = 2e-44
 Identities = 105/280 (37%), Positives = 166/280 (59%), Gaps = 4/280 (1%)
 Frame = +2

Query: 128 KYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQG--AQQLRKQTSDRLETVLLDVTKT 301
           K V ITGCDSGFG+ LA+ LD  G  V A  L EQG  A++LR+  S  L  + L++T T
Sbjct: 84  KAVLITGCDSGFGHGLAKYLDELGFTVFAGVLDEQGSGAEELRRTCSKNLSVLQLNITNT 143

Query: 302 ESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILDVNLLGMVDVTLQ 481
           + + AA   VKE++ ++GLW ++NNAG+  +    E +   ++ + + VN  G V+VT  
Sbjct: 144 QEIKAAYSKVKEKLQNKGLWAVINNAGVLGLPTDGELIPMTEYKRCMAVNFFGAVEVTKV 203

Query: 482 LLPLVRKTRGRVVNVSSVMGRVSLFG-GGYCLSKYGVEAFSDSLRRELSYFGVKVAMIEP 658
            LPL+RK++GR+VN+SS+ G V +     Y  SK  +  FS  LR+ELS +GVKV++I+P
Sbjct: 204 FLPLLRKSKGRLVNISSMAGGVPMQKMAAYGSSKAALIMFSSILRQELSKWGVKVSVIQP 263

Query: 659 GFFKTNVTKPEAISQGY-KTAWNQASPEIKDLYGDTFLALCEKAVCSMETSCNQDLSLVT 835
           G FKTN++    + +   +T  +  SPE+++ YG  ++      +  M+TS + D+S V 
Sbjct: 264 GGFKTNISGTSQMWEKLERTVLDNLSPEVQEDYGQDYILSERSFLNLMKTSTDPDISPVL 323

Query: 836 DCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTFLVDLM 955
             + HA+++  P   Y+PG  +  +    S  PT + D +
Sbjct: 324 LDVRHAISAQSPFAFYAPGKLSYPWLCFASISPTGIFDYL 363


>ref|NP_777067.1| corticosteroid 11-beta-dehydrogenase isozyme 2 [Bos taurus].
          Length = 404

 Score =  145 bits (367), Expect = 4e-35
 Identities = 107/303 (35%), Positives = 145/303 (47%), Gaps = 13/303 (4%)
 Frame = +2

Query: 134  VFITGCDSGFGNLLARQLDLRGLRVLAACL--TEQGAQQLRKQTSDRLETVLLDVTKTES 307
            V ITGCDSGFGN  A++LD  G  VLA  L     GA +LR   S RL+ + +D+TK   
Sbjct: 85   VLITGCDSGFGNATAKKLDTMGFTVLATVLDLNSPGALELRACCSSRLKLLQMDLTKPGD 144

Query: 308  VAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILDVNLLGMVDVTLQLL 487
            ++   E+ K      GLWGLVNNAG ++  A  E      F   ++VN  G +++T  LL
Sbjct: 145  ISRVLEFTKVHTPSTGLWGLVNNAGQNIFVADAELCPVATFRTCMEVNFFGALEMTKGLL 204

Query: 488  PLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRR-----ELSYFGVKVAMI 652
            PL+R++ GR+V VSS  G +       CL+ YG    + +L       EL  +GVKV++I
Sbjct: 205  PLLRRSSGRIVTVSSPAGDMPF----PCLAAYGTSKAALALLMGNFSCELLPWGVKVSII 260

Query: 653  EPGFFKTNVTKPEAISQGYKTAWNQASP-EIKDLYGDTFLALCEKAVCSMETSCNQDLSL 829
            +P  FKT   K     +  K       P E+   YG+ ++           +    DLS 
Sbjct: 261  QPACFKTESVKDVHQWEERKQQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQALPDLSP 320

Query: 830  VTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLP-----TFLVDLMIYYGAPRPAKAL* 994
            V D +  AL +  P  RY PG    L Y    YLP      FL    I    PR  +A  
Sbjct: 321  VVDAITDALLAAQPLRRYYPGHGLGLIYFIHYYLPEGLRQRFLQSFFISPYVPRALQAGQ 380

Query: 995  PKL 1003
            P L
Sbjct: 381  PGL 383


>ref|XP_002702202.1| PREDICTED: dehydrogenase/reductase SDR family member 7B-like [Bos
           taurus].
          Length = 325

 Score = 91.3 bits (225), Expect = 1e-18
 Identities = 68/220 (30%), Positives = 112/220 (50%), Gaps = 11/220 (5%)
 Frame = +2

Query: 86  RWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLA----ACLTEQGAQQLRK 253
           +W R R   +++R+  V ITG  SG G   AR     G R++     A   E+ +Q+L  
Sbjct: 42  QWLRMR---AYVRNAVVVITGATSGLGRECARVFHAAGARLVLCGRNAEALEELSQELAA 98

Query: 254 QTSDRLET-----VLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLT 418
             +  ++T     V  D+    ++A A   + +  G   +  L+NNAGIS   A  +   
Sbjct: 99  SRAPEVQTHKPCTVTFDLADPGAIAGAASEILQCFGHVDV--LINNAGISYRGAIVDTSP 156

Query: 419 KQDFVKILDVNLLGMVDVTLQLLP-LVRKTRGRVVNVSSVMGRVSL-FGGGYCLSKYGVE 592
             D  ++++ N  G V +T  LLP ++R+ +G VV +SS+ G++SL F   Y  SK+  +
Sbjct: 157 DVD-KRVMETNYFGPVALTKALLPAMIRRRQGHVVAISSIQGKISLPFRSAYAASKHATQ 215

Query: 593 AFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYK 712
           AF D LR E+    ++V +I PG+  TN++     + G K
Sbjct: 216 AFFDCLRAEVEQHDIEVTVISPGYIHTNLSLNAVTADGSK 255


>ref|NP_001030420.1| dehydrogenase/reductase SDR family member 7B [Bos taurus].
          Length = 325

 Score = 90.5 bits (223), Expect = 2e-18
 Identities = 68/220 (30%), Positives = 112/220 (50%), Gaps = 11/220 (5%)
 Frame = +2

Query: 86  RWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLA----ACLTEQGAQQLRK 253
           +W R R   +++R+  V ITG  SG G   AR     G R++     A   E+ +Q+L  
Sbjct: 42  QWLRMR---AYVRNAVVVITGATSGLGRECARVFHAAGARLVLCGRNAEALEELSQELAA 98

Query: 254 QTSDRLET-----VLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLT 418
             +  ++T     V  D+    ++A A   + +  G   +  L+NNAGIS   A  +   
Sbjct: 99  SRAPGVQTHKPCTVTFDLADPGAIAGAASEILQCFGHVDV--LINNAGISYRGAIVDTSP 156

Query: 419 KQDFVKILDVNLLGMVDVTLQLLP-LVRKTRGRVVNVSSVMGRVSL-FGGGYCLSKYGVE 592
             D  ++++ N  G V +T  LLP ++R+ +G VV +SS+ G++SL F   Y  SK+  +
Sbjct: 157 DVD-KRVMETNYFGPVALTKALLPAMIRRRQGHVVAISSIQGKISLPFRSAYAASKHATQ 215

Query: 593 AFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYK 712
           AF D LR E+    ++V +I PG+  TN++     + G K
Sbjct: 216 AFFDCLRAEVEQHDIEVTVISPGYIHTNLSLNAVTADGSK 255


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,076,322
Number of extensions: 1130298
Number of successful extensions: 5392
Number of sequences better than 1.0e-05: 51
Number of HSP's gapped: 5319
Number of HSP's successfully gapped: 51
Length of query: 338
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 235
Effective length of database: 14,273,310
Effective search space: 3354227850
Effective search space used: 3354227850
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012374
         (1014 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001230795.1| retinol dehydrogenase 16 (all-trans) [Sus sc...   610   e-175
Alignment   gi|XP_003355528.1| PREDICTED: retinol dehydrogenase 16-like iso...   521   e-148
Alignment   gi|XP_003355527.1| PREDICTED: retinol dehydrogenase 16-like iso...   521   e-148
Alignment   gi|XP_003355529.1| PREDICTED: retinol dehydrogenase 16-like [Su...   513   e-146
Alignment   gi|XP_003355508.1| PREDICTED: 17-beta-hydroxysteroid dehydrogen...   397   e-111
Alignment   gi|XP_003355507.1| PREDICTED: 17-beta-hydroxysteroid dehydrogen...   397   e-111
Alignment   gi|XP_003355526.1| PREDICTED: short-chain dehydrogenase/reducta...   346   1e-95
Alignment   gi|XP_003126302.1| PREDICTED: 11-cis retinol dehydrogenase-like...   325   3e-89
Alignment   gi|XP_003133511.1| PREDICTED: dehydrogenase/reductase SDR famil...   318   3e-87
Alignment   gi|XP_003133510.1| PREDICTED: dehydrogenase/reductase SDR famil...   261   6e-70

>ref|NP_001230795.1| retinol dehydrogenase 16 (all-trans) [Sus scrofa].
          Length = 317

 Score =  610 bits (1572), Expect = e-175
 Identities = 303/317 (95%), Positives = 304/317 (95%)
 Frame = +2

Query: 41  MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
           MW             RWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC
Sbjct: 1   MWVYLAVLVGLYYLLRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60

Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
           LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA
Sbjct: 61  LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 120

Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 580
           PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK
Sbjct: 121 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 180

Query: 581 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 760
           YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 240

Query: 761 TFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTF 940
           TFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDA+LFYLPMSYLPTF
Sbjct: 241 TFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAKLFYLPMSYLPTF 300

Query: 941 LVDLMIYYGAPRPAKAL 991
           LVDLMIYYGAPRPAKAL
Sbjct: 301 LVDLMIYYGAPRPAKAL 317


>ref|XP_003355528.1| PREDICTED: retinol dehydrogenase 16-like isoform 2 [Sus scrofa].
          Length = 317

 Score =  521 bits (1341), Expect = e-148
 Identities = 260/317 (82%), Positives = 275/317 (86%)
 Frame = +2

Query: 41  MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
           MW             RWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC
Sbjct: 1   MWLYLVVLVGLYYLLRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60

Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
           LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGI +  A
Sbjct: 61  LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLA 120

Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 580
           PNEWLTKQDF+ +LDVNLLGMVDVTLQLLPLVRKT+GRVVNVSSVMGRVSLFGGGYCLSK
Sbjct: 121 PNEWLTKQDFMVMLDVNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSK 180

Query: 581 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 760
           YGVEAFSDSLRRELSYFGVKVAMIEPGFF TN+T  E      + AW QASPE+KDLYGD
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAMIEPGFFMTNMTAAEVFHGNLQAAWQQASPEVKDLYGD 240

Query: 761 TFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTF 940
            F+A   K    ++   + +LSLVT+CMEHALTSCHPRTRYSPGWDA+ FYLPMSYLPTF
Sbjct: 241 AFVANFMKTYDLLKPQWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTF 300

Query: 941 LVDLMIYYGAPRPAKAL 991
           LVDLM+YYGAPRPAK L
Sbjct: 301 LVDLMMYYGAPRPAKVL 317


>ref|XP_003355527.1| PREDICTED: retinol dehydrogenase 16-like isoform 1 [Sus scrofa].
          Length = 317

 Score =  521 bits (1341), Expect = e-148
 Identities = 260/317 (82%), Positives = 275/317 (86%)
 Frame = +2

Query: 41  MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
           MW             RWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC
Sbjct: 1   MWLYLVVLVGLYYLLRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60

Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
           LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGI +  A
Sbjct: 61  LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLA 120

Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 580
           PNEWLTKQDF+ +LDVNLLGMVDVTLQLLPLVRKT+GRVVNVSSVMGRVSLFGGGYCLSK
Sbjct: 121 PNEWLTKQDFMVMLDVNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSK 180

Query: 581 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 760
           YGVEAFSDSLRRELSYFGVKVAMIEPGFF TN+T  E      + AW QASPE+KDLYGD
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAMIEPGFFMTNMTAAEVFHGNLQAAWQQASPEVKDLYGD 240

Query: 761 TFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTF 940
            F+A   K    ++   + +LSLVT+CMEHALTSCHPRTRYSPGWDA+ FYLPMSYLPTF
Sbjct: 241 AFVANFMKTYDLLKPQWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTF 300

Query: 941 LVDLMIYYGAPRPAKAL 991
           LVDLM+YYGAPRPAK L
Sbjct: 301 LVDLMMYYGAPRPAKVL 317


>ref|XP_003355529.1| PREDICTED: retinol dehydrogenase 16-like [Sus scrofa].
          Length = 317

 Score =  513 bits (1321), Expect = e-146
 Identities = 256/317 (80%), Positives = 274/317 (86%)
 Frame = +2

Query: 41  MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
           MW             RWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC
Sbjct: 1   MWLYLVVLVGLYYLLRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60

Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
           LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGI    A
Sbjct: 61  LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICTPLA 120

Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 580
           P+EWLTKQDF+ +LDVNLLGMVDVTLQLLPLVRKT+GRVVNVSSVMGRVSLFGGGYCLSK
Sbjct: 121 PSEWLTKQDFMVMLDVNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSK 180

Query: 581 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 760
           YGVEAFSDSLRRELSYFGVKVA+IEPGFF TN+T  E  +   + AW QASPE+KDLYGD
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGD 240

Query: 761 TFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTF 940
            F+A   K    ++   + +LSLVT+CMEHALTSCHPRTRYSPGWDA+ FYLPMSYLPTF
Sbjct: 241 AFVANFMKTYDLLKPQWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTF 300

Query: 941 LVDLMIYYGAPRPAKAL 991
           L+DLM+ YGAPRPAK L
Sbjct: 301 LMDLMMCYGAPRPAKVL 317


>ref|XP_003355508.1| PREDICTED: 17-beta-hydroxysteroid dehydrogenase type 6-like isoform
           2 [Sus scrofa].
          Length = 337

 Score =  397 bits (1021), Expect = e-111
 Identities = 195/317 (61%), Positives = 236/317 (74%)
 Frame = +2

Query: 41  MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
           MW             RW RERQ+VSHL DKYVFITGCDSGFGNLLARQLD+RGLRVLAAC
Sbjct: 21  MWLYLAVLVGLYYLLRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 80

Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
           LTEQGAQQLRKQTSDRLETVLLDVTKTES+AAA +WVKERVGDRGLWGLVNNAG      
Sbjct: 81  LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 140

Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 580
             EWL  + ++  L VNL+G+ +VTL +LPLV+K +GR+VNVSS++GRV+ FG  Y  SK
Sbjct: 141 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 200

Query: 581 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 760
           +GVEAFSD LR EL +FGVKV+++EPG+F+T +T  +  S+  K  W +    IKD YG 
Sbjct: 201 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 260

Query: 761 TFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTF 940
            F       +    +SC+ +L+LVTDCMEHALTS HPRTRYS GWDAQ F++P+SYLPT 
Sbjct: 261 KFFDAYHDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYLPTS 320

Query: 941 LVDLMIYYGAPRPAKAL 991
           L D ++    P+P +A+
Sbjct: 321 LADYILTRSWPKPVQAV 337


>ref|XP_003355507.1| PREDICTED: 17-beta-hydroxysteroid dehydrogenase type 6-like isoform
           1 [Sus scrofa].
          Length = 317

 Score =  397 bits (1021), Expect = e-111
 Identities = 195/317 (61%), Positives = 236/317 (74%)
 Frame = +2

Query: 41  MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
           MW             RW RERQ+VSHL DKYVFITGCDSGFGNLLARQLD+RGLRVLAAC
Sbjct: 1   MWLYLAVLVGLYYLLRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 60

Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
           LTEQGAQQLRKQTSDRLETVLLDVTKTES+AAA +WVKERVGDRGLWGLVNNAG      
Sbjct: 61  LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 120

Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 580
             EWL  + ++  L VNL+G+ +VTL +LPLV+K +GR+VNVSS++GRV+ FG  Y  SK
Sbjct: 121 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 180

Query: 581 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 760
           +GVEAFSD LR EL +FGVKV+++EPG+F+T +T  +  S+  K  W +    IKD YG 
Sbjct: 181 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 240

Query: 761 TFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTF 940
            F       +    +SC+ +L+LVTDCMEHALTS HPRTRYS GWDAQ F++P+SYLPT 
Sbjct: 241 KFFDAYHDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYLPTS 300

Query: 941 LVDLMIYYGAPRPAKAL 991
           L D ++    P+P +A+
Sbjct: 301 LADYILTRSWPKPVQAV 317


>ref|XP_003355526.1| PREDICTED: short-chain dehydrogenase/reductase family 9C member
           7-like [Sus scrofa].
          Length = 313

 Score =  346 bits (887), Expect = 1e-95
 Identities = 165/302 (54%), Positives = 228/302 (75%)
 Frame = +2

Query: 86  RWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSD 265
           RW +   VV +L DKYVFITGCDSGFGNLLARQL  RG+RVLAAC TE+GAQ+L++ TS 
Sbjct: 12  RWFKNCNVVRNLSDKYVFITGCDSGFGNLLARQLVDRGMRVLAACFTEEGAQKLQQDTSY 71

Query: 266 RLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILD 445
           RL+T LLDVTKTES+ AA +WV+++V ++GLW LVNNAG+ + S PNEWLTK+DFVK+++
Sbjct: 72  RLQTTLLDVTKTESIKAAAQWVRDQVSEQGLWALVNNAGVGLPSGPNEWLTKEDFVKVIN 131

Query: 446 VNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELS 625
           VNL+G+++VTL +LP+V+K RGRVVN+SS  GRV++ GGGYC+SK+GVEAFSDS+RREL 
Sbjct: 132 VNLVGLIEVTLHMLPMVKKARGRVVNMSSSGGRVAVIGGGYCVSKFGVEAFSDSIRRELH 191

Query: 626 YFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCSMET 805
           YFGVKV++IEPG ++T++   E++    +  W +   E +D YG+ +  +    + +M  
Sbjct: 192 YFGVKVSIIEPGNYRTSILGKESLEMRMRKMWARLPQETRDSYGEEYFHIYTDKLKNMMQ 251

Query: 806 SCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTFLVDLMIYYGAPRPAK 985
                +  VT+ MEHA+ S  PR RY+PG DA+L Y+P++ LPT + D ++    PRPA 
Sbjct: 252 LAEPRIRDVTNSMEHAIVSRSPRIRYNPGLDAKLLYIPLAKLPTPVTDFILSRYLPRPAD 311

Query: 986 AL 991
           ++
Sbjct: 312 SV 313


>ref|XP_003126302.1| PREDICTED: 11-cis retinol dehydrogenase-like [Sus scrofa].
          Length = 318

 Score =  325 bits (832), Expect = 3e-89
 Identities = 161/300 (53%), Positives = 219/300 (73%), Gaps = 1/300 (0%)
 Frame = +2

Query: 95  RERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSDRLE 274
           R+RQ +    D +VFITGCDSGFG LLA +LD RG RVLA+CLT  GA+ L++  S RL 
Sbjct: 19  RDRQSLP-TSDAFVFITGCDSGFGRLLALRLDQRGFRVLASCLTPSGAEDLQRVASSRLH 77

Query: 275 TVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILDVNL 454
           T LLDVT  +S+  A +WV+  VG+ GL+GLVNNAG++ I  P  W T++DF ++L+VN 
Sbjct: 78  TTLLDVTDPQSIQRAAKWVETHVGEAGLFGLVNNAGVAGIIGPTPWQTREDFQQVLNVNT 137

Query: 455 LGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELSYFG 634
           LG + VTL LLPL+R+ RGRVVNVSSV+GR++  GGGYC+SK+GVEAFSDSLRR+++ FG
Sbjct: 138 LGPIGVTLALLPLLRQARGRVVNVSSVLGRLAANGGGYCVSKFGVEAFSDSLRRDVAPFG 197

Query: 635 VKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCS-METSC 811
           ++V+++EPGFF+T +T PE++    KT W +  P  + LYG+ +L    +     M    
Sbjct: 198 IRVSIVEPGFFQTPITNPESLDNIIKTRWARLPPATQALYGEAYLTKYLRLQHHFMNLLS 257

Query: 812 NQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTFLVDLMIYYGAPRPAKAL 991
           + DL+ V+ C+EHALT+ HPRTRYSPGWDA+L +LP SYLP  LVD +  +  P+PA+A+
Sbjct: 258 DLDLTKVSRCLEHALTARHPRTRYSPGWDAKLLWLPASYLPASLVDAVFTWILPKPAQAV 317


>ref|XP_003133511.1| PREDICTED: dehydrogenase/reductase SDR family member 9-like isoform
           1 [Sus scrofa].
          Length = 319

 Score =  318 bits (815), Expect = 3e-87
 Identities = 148/291 (50%), Positives = 209/291 (71%), Gaps = 1/291 (0%)
 Frame = +2

Query: 89  WQRERQV-VSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSD 265
           W  +RQ+ ++ + DKY+FITGCD+GFGNL AR  D +G  V+AACLTE G+  L+ +TS+
Sbjct: 16  WNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSE 75

Query: 266 RLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILD 445
           RL TVLLDVT  E+V    +WVK +VG++GLWGL+NNAGI  + AP +WLT +D+ + ++
Sbjct: 76  RLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLAPTDWLTVEDYREPIE 135

Query: 446 VNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELS 625
           VNL G+++VTL +LPLV+K RGRV+NVSS+ GR++  GGGY  SKY VE F+DSLRR++ 
Sbjct: 136 VNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFGGGGYAPSKYAVEGFNDSLRRDMK 195

Query: 626 YFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCSMET 805
            FGV VA IEPG FKT +  P   ++     WN  SP+I+  YG+ ++  C   +   ++
Sbjct: 196 AFGVHVACIEPGLFKTGLADPVKTAEKKLAIWNHLSPDIRQQYGEGYIEKCLSKLKGSKS 255

Query: 806 SCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTFLVDLMI 958
             N DLSLV +CM+HALTS  P+TRY+ G DA+ F++P+S++P  L D ++
Sbjct: 256 FMNVDLSLVVECMDHALTSLFPKTRYAAGKDAKTFWIPLSHMPAVLQDFLL 306


>ref|XP_003133510.1| PREDICTED: dehydrogenase/reductase SDR family member 9-like,
           partial [Sus scrofa].
          Length = 245

 Score =  261 bits (666), Expect = 6e-70
 Identities = 121/228 (53%), Positives = 167/228 (73%), Gaps = 1/228 (0%)
 Frame = +2

Query: 89  WQRERQV-VSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSD 265
           W  +RQ+ ++ + DKY+FITGCD+GFGNL AR  D +G  V+AACLTE G+  L+ +TS+
Sbjct: 16  WNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSE 75

Query: 266 RLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILD 445
           RL TVLLDVT  E+V    +WVK +VG++GLWGL+NNAGI  + AP +WLT +D+ + ++
Sbjct: 76  RLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLAPTDWLTVEDYREPIE 135

Query: 446 VNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELS 625
           VNL G+++VTL +LPLV+K RGRV+NVSS+ GR++  GGGY  SKY VE F+DSLRR++ 
Sbjct: 136 VNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFGGGGYAPSKYAVEGFNDSLRRDMK 195

Query: 626 YFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFL 769
            FGV VA IEPG FKT +  P   ++     WN  SP+I+  YG+ ++
Sbjct: 196 AFGVHVACIEPGLFKTGLADPVKTAEKKLAIWNHLSPDIRQQYGEGYI 243


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,226,810
Number of extensions: 729169
Number of successful extensions: 3573
Number of sequences better than 1.0e-05: 43
Number of HSP's gapped: 3510
Number of HSP's successfully gapped: 44
Length of query: 338
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 238
Effective length of database: 8,854,232
Effective search space: 2107307216
Effective search space used: 2107307216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012374
         (1014 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_536684.2| retinol dehydrogenase 1 (all trans) [Mus muscul...   461   e-130
Alignment   gi|NP_033066.1| retinol dehydrogenase 16 [Mus musculus].             454   e-128
Alignment   gi|NP_059501.1| retinol dehydrogenase 7 [Mus musculus].              454   e-128
Alignment   gi|NP_001144221.1| retinol dehydrogenase 7 [Mus musculus].           454   e-128
Alignment   gi|NP_694773.1| retinol dehydrogenase 9 [Mus musculus].              452   e-127
Alignment   gi|NP_671755.2| retinol dehydrogenase similar protein 2 [Mus mu...   446   e-125
Alignment   gi|NP_663399.2| cis-retinol/3alpha hydroxysterol short-chain de...   440   e-124
Alignment   gi|NP_038814.1| 17-beta-hydroxysteroid dehydrogenase type 6 [Mu...   382   e-106
Alignment   gi|NP_081577.1| short-chain dehydrogenase/reductase family 9C m...   342   4e-94
Alignment   gi|NP_598767.1| retinol dehydrogenase 5 [Mus musculus].              323   2e-88

>ref|NP_536684.2| retinol dehydrogenase 1 (all trans) [Mus musculus].
          Length = 317

 Score =  461 bits (1187), Expect = e-130
 Identities = 221/317 (69%), Positives = 263/317 (82%)
 Frame = +2

Query: 41  MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
           MW             R+ RERQVVSHL+DKYVFITGCDSGFGNLLARQLD RG+RVLAAC
Sbjct: 1   MWLYLVALVGLWTLLRFFRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60

Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
           LTE+GA++LR +TSDRLETV+LDVTKTES+ AA +WVKERVG+RGLWGLVNNAGIS  S 
Sbjct: 61  LTEKGAEELRNKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGISTPSG 120

Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 580
           PNEW+ KQDF ++LDVNLLGM++VTL +LPLVRK RGRVVNVSSVMGR+S FGGGYC+SK
Sbjct: 121 PNEWMKKQDFARVLDVNLLGMIEVTLSMLPLVRKARGRVVNVSSVMGRMSFFGGGYCISK 180

Query: 581 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 760
           YGVEAFSDSLRRELSYFGVKVA+IEPG FKT VT  + +S   K  W++AS E+K++YG+
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAIIEPGGFKTCVTSSDRLSSNTKMIWDKASSEVKEIYGE 240

Query: 761 TFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTF 940
            FL    K +  ++  CN+DLS+VTDCMEHALT+CHPRTRYS GWDA+  +LP+SYLPTF
Sbjct: 241 KFLLFYLKNLNELDKRCNKDLSVVTDCMEHALTACHPRTRYSAGWDAKFLFLPLSYLPTF 300

Query: 941 LVDLMIYYGAPRPAKAL 991
           LVD ++Y+ + +P KAL
Sbjct: 301 LVDALLYWTSMKPEKAL 317


>ref|NP_033066.1| retinol dehydrogenase 16 [Mus musculus].
          Length = 317

 Score =  454 bits (1169), Expect = e-128
 Identities = 220/317 (69%), Positives = 258/317 (81%)
 Frame = +2

Query: 41  MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
           MW             R+ R RQVVSHL+DKYVFITGCDSGFG LLARQLD RG+RVLAAC
Sbjct: 1   MWLYLVALVGLWTLLRFFRVRQVVSHLQDKYVFITGCDSGFGTLLARQLDRRGMRVLAAC 60

Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
           LTE+GA++LR +TSDRLETV+LDVTKTES+  A +WVKE VG+RGLWGLVNNAGIS  S 
Sbjct: 61  LTEKGAEELRNKTSDRLETVILDVTKTESIVTATQWVKEHVGNRGLWGLVNNAGISTPSG 120

Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 580
           PNEW+ KQDF  +LDVNLLGM++VTL +LPLVRK RGRVVNVSSVMGRVSLFGGGYC+SK
Sbjct: 121 PNEWMKKQDFAHVLDVNLLGMIEVTLSMLPLVRKARGRVVNVSSVMGRVSLFGGGYCISK 180

Query: 581 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 760
           YGVEAFSDSLRRELSYFGVKVA+IEPGFF T VT    +    +  W+Q S EI+++YG+
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAIIEPGFFLTGVTSSARLCSNTQMLWDQTSSEIREIYGE 240

Query: 761 TFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTF 940
            +LA   K +  ++  CN+DLS VTDCMEHALT+CHPRTRYS GWDA+LFYLP+SYLPTF
Sbjct: 241 KYLASYLKRLNKLDKRCNKDLSGVTDCMEHALTACHPRTRYSAGWDAKLFYLPLSYLPTF 300

Query: 941 LVDLMIYYGAPRPAKAL 991
           LVD ++Y+ + +P KAL
Sbjct: 301 LVDALLYWTSLKPEKAL 317


>ref|NP_059501.1| retinol dehydrogenase 7 [Mus musculus].
          Length = 316

 Score =  454 bits (1168), Expect = e-128
 Identities = 222/317 (70%), Positives = 262/317 (82%)
 Frame = +2

Query: 41  MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
           MW             R+ RERQVVSHL+DKYVFITGCDSGFGNLLARQLD RG+RVLAAC
Sbjct: 1   MWLYLVALVGLWTLLRFFRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60

Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
           LTE+GA+QLR +TSDRLETV+LDVTKTES+ AA +WVKERVG+RGLWGLVNNAGI V  A
Sbjct: 61  LTEKGAEQLRNKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGICVF-A 119

Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 580
            NEWL K+DF  ILDVNLLGM++VTL +LPLVRK RGRVVN+SS MGRVSL GGGYC+SK
Sbjct: 120 INEWLKKEDFANILDVNLLGMIEVTLSMLPLVRKARGRVVNISSSMGRVSLCGGGYCISK 179

Query: 581 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 760
           YGVEAFSDSLRRE+SYFGVKVA+IEPG F+TNV+  E +S   +  W+Q S E+K++Y  
Sbjct: 180 YGVEAFSDSLRREISYFGVKVAIIEPGGFRTNVSNYERLSHSIEKLWDQTSSEVKEVYDK 239

Query: 761 TFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTF 940
            FL    KA+ S+  +C+ DLS+VTDCMEHALT+CHPRTRYS GWDA+LFYLP+SY+PTF
Sbjct: 240 NFLDSYIKAIQSLTDTCSDDLSVVTDCMEHALTACHPRTRYSAGWDAKLFYLPLSYMPTF 299

Query: 941 LVDLMIYYGAPRPAKAL 991
           LVD M+Y+ + +PA+AL
Sbjct: 300 LVDAMLYWSSVKPAQAL 316


>ref|NP_001144221.1| retinol dehydrogenase 7 [Mus musculus].
          Length = 316

 Score =  454 bits (1168), Expect = e-128
 Identities = 222/317 (70%), Positives = 262/317 (82%)
 Frame = +2

Query: 41  MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
           MW             R+ RERQVVSHL+DKYVFITGCDSGFGNLLARQLD RG+RVLAAC
Sbjct: 1   MWLYLVALVGLWTLLRFFRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60

Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
           LTE+GA+QLR +TSDRLETV+LDVTKTES+ AA +WVKERVG+RGLWGLVNNAGI V  A
Sbjct: 61  LTEKGAEQLRNKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGICVF-A 119

Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 580
            NEWL K+DF  ILDVNLLGM++VTL +LPLVRK RGRVVN+SS MGRVSL GGGYC+SK
Sbjct: 120 INEWLKKEDFANILDVNLLGMIEVTLSMLPLVRKARGRVVNISSSMGRVSLCGGGYCISK 179

Query: 581 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 760
           YGVEAFSDSLRRE+SYFGVKVA+IEPG F+TNV+  E +S   +  W+Q S E+K++Y  
Sbjct: 180 YGVEAFSDSLRREISYFGVKVAIIEPGGFRTNVSNYERLSHSIEKLWDQTSSEVKEVYDK 239

Query: 761 TFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTF 940
            FL    KA+ S+  +C+ DLS+VTDCMEHALT+CHPRTRYS GWDA+LFYLP+SY+PTF
Sbjct: 240 NFLDSYIKAIQSLTDTCSDDLSVVTDCMEHALTACHPRTRYSAGWDAKLFYLPLSYMPTF 299

Query: 941 LVDLMIYYGAPRPAKAL 991
           LVD M+Y+ + +PA+AL
Sbjct: 300 LVDAMLYWSSVKPAQAL 316


>ref|NP_694773.1| retinol dehydrogenase 9 [Mus musculus].
          Length = 317

 Score =  452 bits (1162), Expect = e-127
 Identities = 214/299 (71%), Positives = 257/299 (85%)
 Frame = +2

Query: 95  RERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSDRLE 274
           RERQVVS+L+DKYVFITGCDSGFGNLLARQLD RG+RVLAACLTE+GA++LR +TSDRLE
Sbjct: 19  RERQVVSYLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAACLTEKGAEELRNKTSDRLE 78

Query: 275 TVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILDVNL 454
           TV+LDVTKTES+  A +WVKERVG+RGLWGLVNNAGIS+ S PNEW+ KQDF  +LDVNL
Sbjct: 79  TVILDVTKTESIVTATQWVKERVGNRGLWGLVNNAGISIPSGPNEWMKKQDFAHVLDVNL 138

Query: 455 LGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELSYFG 634
           LG+++VTL +LPLVRK RGRV+NV+SV+GRVSL GG YC+SKYGVEAFSDSLRRELSYFG
Sbjct: 139 LGLIEVTLSMLPLVRKARGRVINVASVLGRVSLCGGAYCISKYGVEAFSDSLRRELSYFG 198

Query: 635 VKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCSMETSCN 814
           VKVA+IEPGFF T VT    +    +  W+Q S EI+++YG+ +LA   K +  ++  CN
Sbjct: 199 VKVAIIEPGFFLTGVTSSARLCSNTQMLWDQTSSEIREIYGEKYLASYLKRLNELDKRCN 258

Query: 815 QDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTFLVDLMIYYGAPRPAKAL 991
           +DLSLVTDCMEHALT+CHPRTRYS GWDA+LFYLP+SYLPTFLVD ++Y+ + +P KAL
Sbjct: 259 KDLSLVTDCMEHALTACHPRTRYSAGWDAKLFYLPLSYLPTFLVDALLYWTSLKPEKAL 317


>ref|NP_671755.2| retinol dehydrogenase similar protein 2 [Mus musculus].
          Length = 318

 Score =  446 bits (1148), Expect = e-125
 Identities = 216/318 (67%), Positives = 261/318 (82%), Gaps = 1/318 (0%)
 Frame = +2

Query: 41  MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
           MW             R+ RERQVVSHL+DKYVFITGCDSGFGNLLARQLD RG+RVLAAC
Sbjct: 1   MWLYLVSLVGLWTLLRFFRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60

Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
           LTE+GA++LR +TSDRLETV+LDVTKTES+ AA +WVKERVG+RGLWGLVNNAGISV   
Sbjct: 61  LTEKGAEELRNKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGISVPLG 120

Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFG-GGYCLS 577
            ++W+ KQ+F  +LDVNLLGM++VTL +LPLVRK RGRVVNVSS+MGRVSL G GGYC+S
Sbjct: 121 LSQWMNKQNFASVLDVNLLGMIEVTLTMLPLVRKARGRVVNVSSIMGRVSLHGNGGYCIS 180

Query: 578 KYGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYG 757
           KYGVEAFSDSLRRELSYFGVKVA+IEPGFF T +     +S   +  W+Q S EI+++YG
Sbjct: 181 KYGVEAFSDSLRRELSYFGVKVAIIEPGFFLTGMASSARLSSNTQMLWDQTSSEIREIYG 240

Query: 758 DTFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPT 937
           + +LA   K++  ++  CN+DLSLVTDCMEHALT+CHPRTRYS GWDA+LF++P+SYLPT
Sbjct: 241 EKYLAFYLKSLNELDKRCNKDLSLVTDCMEHALTACHPRTRYSAGWDAKLFFIPLSYLPT 300

Query: 938 FLVDLMIYYGAPRPAKAL 991
           FLVD + Y+ + +P KAL
Sbjct: 301 FLVDAVFYWTSMKPEKAL 318


>ref|NP_663399.2| cis-retinol/3alpha hydroxysterol short-chain dehydrogenase-like
           [Mus musculus].
          Length = 318

 Score =  440 bits (1132), Expect = e-124
 Identities = 210/318 (66%), Positives = 258/318 (81%), Gaps = 1/318 (0%)
 Frame = +2

Query: 41  MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
           MW             R+ RERQVV HL+DKYVFITGC SGFGNLLARQLD RG+RVLAAC
Sbjct: 1   MWLYMVALLGLWMLLRFFRERQVVDHLQDKYVFITGCGSGFGNLLARQLDRRGMRVLAAC 60

Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
             E+GA++LR++TS+RLETV+LDVTKTE++ AA +WVKERVG+RGLWGLVNNAGISV S 
Sbjct: 61  RKEEGAEELRRKTSERLETVILDVTKTENIVAATQWVKERVGNRGLWGLVNNAGISVPSG 120

Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFG-GGYCLS 577
           PNEW+ KQDF  +LDVNLLG+++VTL +LPLVRK RGRVVNVSS++GRVSL G GGYC+S
Sbjct: 121 PNEWMKKQDFASVLDVNLLGLIEVTLSMLPLVRKARGRVVNVSSILGRVSLGGSGGYCIS 180

Query: 578 KYGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYG 757
           KYG+EAFSDSLRREL YFGVKVA+IEPGFF T +     +    +  W+Q S EI+++YG
Sbjct: 181 KYGIEAFSDSLRRELRYFGVKVAIIEPGFFLTGMASSARLCSNIQMLWDQTSSEIREIYG 240

Query: 758 DTFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPT 937
           + +LA   K +  ++  CN+DLS+VTDCMEHALT+CHPRTRYS GWDA+LF+ P+SYLPT
Sbjct: 241 EKYLASYLKNLNELDQRCNKDLSVVTDCMEHALTACHPRTRYSAGWDAKLFFTPLSYLPT 300

Query: 938 FLVDLMIYYGAPRPAKAL 991
           FLVD ++Y+ +P+P KAL
Sbjct: 301 FLVDALLYWTSPKPDKAL 318


>ref|NP_038814.1| 17-beta-hydroxysteroid dehydrogenase type 6 [Mus musculus].
          Length = 317

 Score =  382 bits (981), Expect = e-106
 Identities = 191/316 (60%), Positives = 229/316 (72%)
 Frame = +2

Query: 41  MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
           MW             RW RERQVVSHL+DKYVFITGCDSGFGNLLARQLD RG+RVLAAC
Sbjct: 1   MWFYLVTLVGLYHLLRWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60

Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
           LTE+GA++LR +TSDRLETV+LDVTKTES+ AA +WVKERVGDRGLWGLVNNAG+    A
Sbjct: 61  LTEKGAEELRNKTSDRLETVILDVTKTESIVAATQWVKERVGDRGLWGLVNNAGVLQPFA 120

Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 580
             EW   +D++ I  VNL+G+  VT+ +L LV+K RGR+VNVSS +GRV+LFGG Y  SK
Sbjct: 121 YIEWYRPEDYMPIFQVNLIGLTQVTISMLFLVKKARGRIVNVSSALGRVALFGGFYSCSK 180

Query: 581 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 760
           YGVEAFSD LR E+  FGVKV++IEPG FKT +T  E   +  K  W  A   IK+ YG 
Sbjct: 181 YGVEAFSDVLRHEVQDFGVKVSIIEPGSFKTEMTDAELTIERTKKVWEAAPEHIKESYGQ 240

Query: 761 TFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTF 940
            F              C+++LSLVTDCMEHALTS HPRTRYS GWDA+ F++P+SYLP  
Sbjct: 241 QFFDDFCSTTKRELMKCSRNLSLVTDCMEHALTSTHPRTRYSAGWDAKFFFIPLSYLPAS 300

Query: 941 LVDLMIYYGAPRPAKA 988
           LVD ++     +PA+A
Sbjct: 301 LVDYLLAISRGKPAQA 316


>ref|NP_081577.1| short-chain dehydrogenase/reductase family 9C member 7 [Mus
           musculus].
          Length = 313

 Score =  342 bits (876), Expect = 4e-94
 Identities = 161/302 (53%), Positives = 228/302 (75%)
 Frame = +2

Query: 86  RWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSD 265
           RW +   +V +L +KYVFITGCDSGFGNLLA+QL  RG++VLAACLTE+GAQ+L + TS 
Sbjct: 12  RWFKNCNLVKNLSEKYVFITGCDSGFGNLLAKQLVDRGMKVLAACLTEEGAQKLLQDTSH 71

Query: 266 RLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILD 445
           +L+T LLDVTK+E+V  A +WV+++VG++GLW LVNNAG+ + S PNEWLT +DFVK+++
Sbjct: 72  QLQTFLLDVTKSENVKEAAQWVRDQVGEQGLWALVNNAGVGLPSGPNEWLTIKDFVKVIN 131

Query: 446 VNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELS 625
           +NL+G++DVTL +LP+++K RGRVVN+SS  GRV++FGGGYC+SK+GVEAFSDS+RREL 
Sbjct: 132 INLVGLIDVTLNMLPMIKKARGRVVNMSSSGGRVAIFGGGYCVSKFGVEAFSDSIRRELH 191

Query: 626 YFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCSMET 805
           +FGVKV++IEPG +KT++   EA+    K  W++   E +D YG+ +     K + ++  
Sbjct: 192 FFGVKVSIIEPGNYKTSILGQEALESRMKKLWDRLPQETRDSYGEEYFQTYTKKLVNLMR 251

Query: 806 SCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTFLVDLMIYYGAPRPAK 985
           S    +S VT+ MEHA+ S  PR RY+PG D +  YL ++ LPT + D ++    PRPA 
Sbjct: 252 SAEPRISDVTNSMEHAIVSRSPRIRYNPGLDVKFLYLTLAKLPTPVTDFILSRYLPRPAD 311

Query: 986 AL 991
           ++
Sbjct: 312 SV 313


>ref|NP_598767.1| retinol dehydrogenase 5 [Mus musculus].
          Length = 318

 Score =  323 bits (827), Expect = 2e-88
 Identities = 157/300 (52%), Positives = 217/300 (72%), Gaps = 1/300 (0%)
 Frame = +2

Query: 95  RERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSDRLE 274
           R+RQ +    D ++FITGCDSGFG LLA QLD +G +VLA CLT  GA+ L++  S RL 
Sbjct: 19  RDRQSLP-ASDAFIFITGCDSGFGRLLALQLDQKGFQVLAGCLTPSGAEDLQQMASSRLH 77

Query: 275 TVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILDVNL 454
           T LLD+T  ++V    +WVK RVG+ GL+GLVNNAG++ I  P  WLT+ DF ++L VN 
Sbjct: 78  TTLLDITDPQNVQQVAKWVKTRVGETGLFGLVNNAGVAGIIGPTPWLTQDDFQRVLSVNT 137

Query: 455 LGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELSYFG 634
           LG + VTL LLPL+++ RGRVVN++SV+GR++  GGGYC+SK+G+EAFSDSLRR+++ FG
Sbjct: 138 LGPIGVTLALLPLLQQARGRVVNITSVLGRIAANGGGYCVSKFGLEAFSDSLRRDMAPFG 197

Query: 635 VKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCS-METSC 811
           V+V+++EPGFF+T VT  E++    K  W +  P I+  YG+ FL    +     M   C
Sbjct: 198 VQVSIVEPGFFRTPVTNLESLESTLKACWARLPPAIQAHYGEAFLDTYLRVQRRIMNLIC 257

Query: 812 NQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTFLVDLMIYYGAPRPAKAL 991
           + +L+ VT C+EHALT+ HPRTRYSPGWDA+L +LP SYLP  +VD ++ +  PRPA+++
Sbjct: 258 DPELTKVTSCLEHALTARHPRTRYSPGWDAKLLWLPASYLPARVVDAVLTWILPRPAQSV 317


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,719,703
Number of extensions: 945602
Number of successful extensions: 4267
Number of sequences better than 1.0e-05: 49
Number of HSP's gapped: 4183
Number of HSP's successfully gapped: 49
Length of query: 338
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 236
Effective length of database: 12,553,887
Effective search space: 2962717332
Effective search space used: 2962717332
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012374
         (1014 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_003699.3| retinol dehydrogenase 16 [Homo sapiens].             472   e-133
Alignment   gi|NP_003716.2| 17-beta-hydroxysteroid dehydrogenase type 6 pre...   396   e-110
Alignment   gi|NP_683695.1| short-chain dehydrogenase/reductase family 9C m...   333   1e-91
Alignment   gi|NP_001186700.1| 11-cis retinol dehydrogenase [Homo sapiens].      318   5e-87
Alignment   gi|NP_002896.2| 11-cis retinol dehydrogenase [Homo sapiens].         318   5e-87
Alignment   gi|NP_001135743.1| dehydrogenase/reductase SDR family member 9 ...   311   6e-85
Alignment   gi|NP_954674.1| dehydrogenase/reductase SDR family member 9 pre...   311   6e-85
Alignment   gi|NP_001135742.1| dehydrogenase/reductase SDR family member 9 ...   311   6e-85
Alignment   gi|NP_005762.2| dehydrogenase/reductase SDR family member 9 pre...   311   6e-85
Alignment   gi|NP_976060.1| D-beta-hydroxybutyrate dehydrogenase, mitochond...   185   5e-47

>ref|NP_003699.3| retinol dehydrogenase 16 [Homo sapiens].
          Length = 317

 Score =  472 bits (1214), Expect = e-133
 Identities = 233/317 (73%), Positives = 264/317 (83%)
 Frame = +2

Query: 41  MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
           MW              W RERQV+SHLRDKYVFITGCDSGFG LLARQLD RGLRVLAAC
Sbjct: 1   MWLYLAVFVGLYYLLHWYRERQVLSHLRDKYVFITGCDSGFGKLLARQLDARGLRVLAAC 60

Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
           LTE+GA+QLR QTSDRLETV LDVTKTESVAAA +WVKE V D+GLWGLVNNAGIS+ +A
Sbjct: 61  LTEKGAEQLRGQTSDRLETVTLDVTKTESVAAAAQWVKECVRDKGLWGLVNNAGISLPTA 120

Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 580
           PNE LTKQDFV ILDVNLLG++DVTL LLPLVR+ RGRVVNVSSVMGRVSLFGGGYC+SK
Sbjct: 121 PNELLTKQDFVTILDVNLLGVIDVTLSLLPLVRRARGRVVNVSSVMGRVSLFGGGYCISK 180

Query: 581 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 760
           YGVEAFSDSLRRELSYFGVKVAMIEPG+FKT VT  E   + +   W+++SPE+K+ YG+
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAMIEPGYFKTAVTSKERFLKSFLEIWDRSSPEVKEAYGE 240

Query: 761 TFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTF 940
            F+A  +K+   ME  C QDLSLVT+CMEHAL +CHPRTRYS GWDA+L YLPMSY+PTF
Sbjct: 241 KFVADYKKSAEQMEQKCTQDLSLVTNCMEHALIACHPRTRYSAGWDAKLLYLPMSYMPTF 300

Query: 941 LVDLMIYYGAPRPAKAL 991
           LVD ++Y+ +P PAKAL
Sbjct: 301 LVDAIMYWVSPSPAKAL 317


>ref|NP_003716.2| 17-beta-hydroxysteroid dehydrogenase type 6 precursor [Homo
           sapiens].
          Length = 317

 Score =  396 bits (1017), Expect = e-110
 Identities = 191/317 (60%), Positives = 237/317 (74%)
 Frame = +2

Query: 41  MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 220
           MW              W RERQVVSHL+DKYVFITGCDSGFGNLLARQLD RGLRVLAAC
Sbjct: 1   MWLYLAAFVGLYYLLHWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDARGLRVLAAC 60

Query: 221 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 400
           LTE+GA+QLR QTSDRLETV LDVTK ES+AAA +WVKE VGDRGLWGLVNNAGI     
Sbjct: 61  LTEKGAEQLRGQTSDRLETVTLDVTKMESIAAATQWVKEHVGDRGLWGLVNNAGILTPIT 120

Query: 401 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 580
             EWL  +D + +L VNL+G++ VTL +LPLVR+ RGR+VNVSS++GRV+ F GGYC+SK
Sbjct: 121 LCEWLNTEDSMNMLKVNLIGVIQVTLSMLPLVRRARGRIVNVSSILGRVAFFVGGYCVSK 180

Query: 581 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 760
           YGVEAFSD LRRE+ +FGVK++++EPG+F+T +T      +  K +W +A   IK+ YG 
Sbjct: 181 YGVEAFSDILRREIQHFGVKISIVEPGYFRTGMTNMTQSLERMKQSWKEAPKHIKETYGQ 240

Query: 761 TFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTF 940
            +       +     +C+ +L+LVTDCMEHALTS HPRTRYS GWDA+ F++P+SYLPT 
Sbjct: 241 QYFDALYNIMKEGLLNCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAKFFFIPLSYLPTS 300

Query: 941 LVDLMIYYGAPRPAKAL 991
           L D ++    P+PA+A+
Sbjct: 301 LADYILTRSWPKPAQAV 317


>ref|NP_683695.1| short-chain dehydrogenase/reductase family 9C member 7 [Homo
           sapiens].
          Length = 313

 Score =  333 bits (854), Expect = 1e-91
 Identities = 157/302 (51%), Positives = 224/302 (74%)
 Frame = +2

Query: 86  RWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSD 265
           RW +   +V +L +KYVFITGCDSGFGNLLA+QL  RG++VLAAC TE+G+Q+L++ TS 
Sbjct: 12  RWFKNCNLVGNLSEKYVFITGCDSGFGNLLAKQLVDRGMQVLAACFTEEGSQKLQRDTSY 71

Query: 266 RLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILD 445
           RL+T LLDVTK+ES+ AA +WV+++VG++GLW LVNNAG+ + S PNEWLTK DFVK+++
Sbjct: 72  RLQTTLLDVTKSESIKAAAQWVRDKVGEQGLWALVNNAGVGLPSGPNEWLTKDDFVKVIN 131

Query: 446 VNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELS 625
           VNL+G+++VTL +LP+V++ RGRVVN+SS  GRV++ GGGYC+SK+GVEAFSDS+RREL 
Sbjct: 132 VNLVGLIEVTLHMLPMVKRARGRVVNMSSSGGRVAVIGGGYCVSKFGVEAFSDSIRRELY 191

Query: 626 YFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCSMET 805
           YFGVKV +IEPG ++T +   E +    +  W +   E +D YG+ +  +    + ++  
Sbjct: 192 YFGVKVCIIEPGNYRTAILGKENLESRMRKLWERLPQETRDSYGEDYFRIYTDKLKNIMQ 251

Query: 806 SCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTFLVDLMIYYGAPRPAK 985
                +  V + MEHA+ S  PR RY+PG DA+L Y+P++ LPT + D ++    PRPA 
Sbjct: 252 VAEPRVRDVINSMEHAIVSRSPRIRYNPGLDAKLLYIPLAKLPTPVTDFILSRYLPRPAD 311

Query: 986 AL 991
           ++
Sbjct: 312 SV 313


>ref|NP_001186700.1| 11-cis retinol dehydrogenase [Homo sapiens].
          Length = 318

 Score =  318 bits (815), Expect = 5e-87
 Identities = 155/300 (51%), Positives = 218/300 (72%), Gaps = 1/300 (0%)
 Frame = +2

Query: 95  RERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSDRLE 274
           R+RQ +    + +VFITGCDSGFG LLA QLD RG RVLA+CLT  GA+ L++  S RL 
Sbjct: 19  RDRQSLP-ASNAFVFITGCDSGFGRLLALQLDQRGFRVLASCLTPSGAEDLQRVASSRLH 77

Query: 275 TVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILDVNL 454
           T LLD+T  +SV  A +WV+  V + GL+GLVNNAG++ I  P  WLT+ DF ++L+VN 
Sbjct: 78  TTLLDITDPQSVQQAAKWVEMHVKEAGLFGLVNNAGVAGIIGPTPWLTRDDFQRVLNVNT 137

Query: 455 LGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELSYFG 634
           +G + VTL LLPL+++ RGRV+N++SV+GR++  GGGYC+SK+G+EAFSDSLRR++++FG
Sbjct: 138 MGPIGVTLALLPLLQQARGRVINITSVLGRLAANGGGYCVSKFGLEAFSDSLRRDVAHFG 197

Query: 635 VKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCS-METSC 811
           ++V+++EPGFF+T VT  E++ +  +  W +  P  +  YG  FL    K     M   C
Sbjct: 198 IRVSIVEPGFFRTPVTNLESLEKTLQACWARLPPATQAHYGGAFLTKYLKMQQRIMNLIC 257

Query: 812 NQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTFLVDLMIYYGAPRPAKAL 991
           + DL+ V+ C+EHALT+ HPRTRYSPGWDA+L +LP SYLP  LVD ++ +  P+PA+A+
Sbjct: 258 DPDLTKVSRCLEHALTARHPRTRYSPGWDAKLLWLPASYLPASLVDAVLTWVLPKPAQAV 317


>ref|NP_002896.2| 11-cis retinol dehydrogenase [Homo sapiens].
          Length = 318

 Score =  318 bits (815), Expect = 5e-87
 Identities = 155/300 (51%), Positives = 218/300 (72%), Gaps = 1/300 (0%)
 Frame = +2

Query: 95  RERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSDRLE 274
           R+RQ +    + +VFITGCDSGFG LLA QLD RG RVLA+CLT  GA+ L++  S RL 
Sbjct: 19  RDRQSLP-ASNAFVFITGCDSGFGRLLALQLDQRGFRVLASCLTPSGAEDLQRVASSRLH 77

Query: 275 TVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILDVNL 454
           T LLD+T  +SV  A +WV+  V + GL+GLVNNAG++ I  P  WLT+ DF ++L+VN 
Sbjct: 78  TTLLDITDPQSVQQAAKWVEMHVKEAGLFGLVNNAGVAGIIGPTPWLTRDDFQRVLNVNT 137

Query: 455 LGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELSYFG 634
           +G + VTL LLPL+++ RGRV+N++SV+GR++  GGGYC+SK+G+EAFSDSLRR++++FG
Sbjct: 138 MGPIGVTLALLPLLQQARGRVINITSVLGRLAANGGGYCVSKFGLEAFSDSLRRDVAHFG 197

Query: 635 VKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCS-METSC 811
           ++V+++EPGFF+T VT  E++ +  +  W +  P  +  YG  FL    K     M   C
Sbjct: 198 IRVSIVEPGFFRTPVTNLESLEKTLQACWARLPPATQAHYGGAFLTKYLKMQQRIMNLIC 257

Query: 812 NQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTFLVDLMIYYGAPRPAKAL 991
           + DL+ V+ C+EHALT+ HPRTRYSPGWDA+L +LP SYLP  LVD ++ +  P+PA+A+
Sbjct: 258 DPDLTKVSRCLEHALTARHPRTRYSPGWDAKLLWLPASYLPASLVDAVLTWVLPKPAQAV 317


>ref|NP_001135743.1| dehydrogenase/reductase SDR family member 9 precursor [Homo
           sapiens].
          Length = 319

 Score =  311 bits (797), Expect = 6e-85
 Identities = 145/291 (49%), Positives = 207/291 (71%), Gaps = 1/291 (0%)
 Frame = +2

Query: 89  WQRERQV-VSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSD 265
           W R+ ++ +  + DKY+FITGCDSGFGNL AR  D +G  V+AACLTE G+  L+ +TS+
Sbjct: 16  WTRKGKLKIEDITDKYIFITGCDSGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSE 75

Query: 266 RLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILD 445
           RL TVLLDVT  E+V    +WVK +VG++GLWGL+NNAG+  + AP +WLT +D+ + ++
Sbjct: 76  RLRTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGVPGVLAPTDWLTLEDYREPIE 135

Query: 446 VNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELS 625
           VNL G++ VTL +LPLV+K +GRV+NVSSV GR+++ GGGY  SKY VE F+DSLRR++ 
Sbjct: 136 VNLFGLISVTLNMLPLVKKAQGRVINVSSVGGRLAIVGGGYTPSKYAVEGFNDSLRRDMK 195

Query: 626 YFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCSMET 805
            FGV V+ IEPG FKTN+  P  + +     W Q SP+IK  YG+ ++      +   ++
Sbjct: 196 AFGVHVSCIEPGLFKTNLADPVKVIEKKLAIWEQLSPDIKQQYGEGYIEKSLDKLKGNKS 255

Query: 806 SCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTFLVDLMI 958
             N DLS V +CM+HALTS  P+T Y+ G DA++F++P+S++P  L D ++
Sbjct: 256 YVNMDLSPVVECMDHALTSLFPKTHYAAGKDAKIFWIPLSHMPAALQDFLL 306


>ref|NP_954674.1| dehydrogenase/reductase SDR family member 9 precursor [Homo
           sapiens].
          Length = 319

 Score =  311 bits (797), Expect = 6e-85
 Identities = 145/291 (49%), Positives = 207/291 (71%), Gaps = 1/291 (0%)
 Frame = +2

Query: 89  WQRERQV-VSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSD 265
           W R+ ++ +  + DKY+FITGCDSGFGNL AR  D +G  V+AACLTE G+  L+ +TS+
Sbjct: 16  WTRKGKLKIEDITDKYIFITGCDSGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSE 75

Query: 266 RLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILD 445
           RL TVLLDVT  E+V    +WVK +VG++GLWGL+NNAG+  + AP +WLT +D+ + ++
Sbjct: 76  RLRTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGVPGVLAPTDWLTLEDYREPIE 135

Query: 446 VNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELS 625
           VNL G++ VTL +LPLV+K +GRV+NVSSV GR+++ GGGY  SKY VE F+DSLRR++ 
Sbjct: 136 VNLFGLISVTLNMLPLVKKAQGRVINVSSVGGRLAIVGGGYTPSKYAVEGFNDSLRRDMK 195

Query: 626 YFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCSMET 805
            FGV V+ IEPG FKTN+  P  + +     W Q SP+IK  YG+ ++      +   ++
Sbjct: 196 AFGVHVSCIEPGLFKTNLADPVKVIEKKLAIWEQLSPDIKQQYGEGYIEKSLDKLKGNKS 255

Query: 806 SCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTFLVDLMI 958
             N DLS V +CM+HALTS  P+T Y+ G DA++F++P+S++P  L D ++
Sbjct: 256 YVNMDLSPVVECMDHALTSLFPKTHYAAGKDAKIFWIPLSHMPAALQDFLL 306


>ref|NP_001135742.1| dehydrogenase/reductase SDR family member 9 precursor [Homo
           sapiens].
          Length = 319

 Score =  311 bits (797), Expect = 6e-85
 Identities = 145/291 (49%), Positives = 207/291 (71%), Gaps = 1/291 (0%)
 Frame = +2

Query: 89  WQRERQV-VSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSD 265
           W R+ ++ +  + DKY+FITGCDSGFGNL AR  D +G  V+AACLTE G+  L+ +TS+
Sbjct: 16  WTRKGKLKIEDITDKYIFITGCDSGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSE 75

Query: 266 RLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILD 445
           RL TVLLDVT  E+V    +WVK +VG++GLWGL+NNAG+  + AP +WLT +D+ + ++
Sbjct: 76  RLRTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGVPGVLAPTDWLTLEDYREPIE 135

Query: 446 VNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELS 625
           VNL G++ VTL +LPLV+K +GRV+NVSSV GR+++ GGGY  SKY VE F+DSLRR++ 
Sbjct: 136 VNLFGLISVTLNMLPLVKKAQGRVINVSSVGGRLAIVGGGYTPSKYAVEGFNDSLRRDMK 195

Query: 626 YFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCSMET 805
            FGV V+ IEPG FKTN+  P  + +     W Q SP+IK  YG+ ++      +   ++
Sbjct: 196 AFGVHVSCIEPGLFKTNLADPVKVIEKKLAIWEQLSPDIKQQYGEGYIEKSLDKLKGNKS 255

Query: 806 SCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTFLVDLMI 958
             N DLS V +CM+HALTS  P+T Y+ G DA++F++P+S++P  L D ++
Sbjct: 256 YVNMDLSPVVECMDHALTSLFPKTHYAAGKDAKIFWIPLSHMPAALQDFLL 306


>ref|NP_005762.2| dehydrogenase/reductase SDR family member 9 precursor [Homo
           sapiens].
          Length = 319

 Score =  311 bits (797), Expect = 6e-85
 Identities = 145/291 (49%), Positives = 207/291 (71%), Gaps = 1/291 (0%)
 Frame = +2

Query: 89  WQRERQV-VSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSD 265
           W R+ ++ +  + DKY+FITGCDSGFGNL AR  D +G  V+AACLTE G+  L+ +TS+
Sbjct: 16  WTRKGKLKIEDITDKYIFITGCDSGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSE 75

Query: 266 RLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILD 445
           RL TVLLDVT  E+V    +WVK +VG++GLWGL+NNAG+  + AP +WLT +D+ + ++
Sbjct: 76  RLRTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGVPGVLAPTDWLTLEDYREPIE 135

Query: 446 VNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELS 625
           VNL G++ VTL +LPLV+K +GRV+NVSSV GR+++ GGGY  SKY VE F+DSLRR++ 
Sbjct: 136 VNLFGLISVTLNMLPLVKKAQGRVINVSSVGGRLAIVGGGYTPSKYAVEGFNDSLRRDMK 195

Query: 626 YFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCSMET 805
            FGV V+ IEPG FKTN+  P  + +     W Q SP+IK  YG+ ++      +   ++
Sbjct: 196 AFGVHVSCIEPGLFKTNLADPVKVIEKKLAIWEQLSPDIKQQYGEGYIEKSLDKLKGNKS 255

Query: 806 SCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAQLFYLPMSYLPTFLVDLMI 958
             N DLS V +CM+HALTS  P+T Y+ G DA++F++P+S++P  L D ++
Sbjct: 256 YVNMDLSPVVECMDHALTSLFPKTHYAAGKDAKIFWIPLSHMPAALQDFLL 306


>ref|NP_976060.1| D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Homo
           sapiens].
          Length = 343

 Score =  185 bits (470), Expect = 5e-47
 Identities = 118/291 (40%), Positives = 170/291 (58%), Gaps = 13/291 (4%)
 Frame = +2

Query: 128 KYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQ----GAQQLRKQTSDRLETVLLDVT 295
           K V +TGCDSGFG  LA+ L  +G  V A CL +     G ++L    SDRL TV L+V 
Sbjct: 56  KAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQLNVC 115

Query: 296 KTESVAAAKEWVKERVGD--RGLWGLVNNAGISVISAPNEWLTKQDFVKILDVNLLGMVD 469
            +E V    E V+  + D  +G+WGLVNNAGIS      E+ + + + ++ +VNL G V 
Sbjct: 116 SSEEVEKVVEIVRSSLKDPEKGMWGLVNNAGISTFGEV-EFTSLETYKQVAEVNLWGTVR 174

Query: 470 VTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGG-YCLSKYGVEAFSDSLRRELSYFGVKVA 646
           +T   LPL+R+ +GRVVN+SS++GR++      YC++K+GVEAFSD LR E+   GVKV+
Sbjct: 175 MTKSFLPLIRRAKGRVVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPLGVKVS 234

Query: 647 MIEPGFF--KTNVTKPEAISQGYKTAWNQASPEIKDLYGDTFLALCEKAVCSMETSCNQ- 817
           ++EPG F   T++  PE+I    K  W +    ++  YG  +    ++ +  MET C+  
Sbjct: 235 VVEPGNFIAATSLYSPESIQAIAKKMWEELPEVVRKDYGKKYF---DEKIAKMETYCSSG 291

Query: 818 --DLSLVTDCMEHALTSCHPRTRYSP-GWDAQLFYLPMSYLPTFLVDLMIY 961
             D S V D + HALT+  P TRY P  +   L    M++LP  + D MIY
Sbjct: 292 STDTSPVIDAVTHALTATTPYTRYHPMDYYWWLRMQIMTHLPGAISD-MIY 341


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,854,889
Number of extensions: 1134429
Number of successful extensions: 5236
Number of sequences better than 1.0e-05: 53
Number of HSP's gapped: 5140
Number of HSP's successfully gapped: 53
Length of query: 338
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 235
Effective length of database: 14,901,872
Effective search space: 3501939920
Effective search space used: 3501939920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012374
         (1014 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr05                                                         702   0.0  
Sscrofa_Chr02                                                         117   1e-23

>Sscrofa_Chr05 
||          Length = 111506441

 Score =  702 bits (354), Expect = 0.0
 Identities = 354/354 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1        gtctgaccccagcctgtctgtttctgtcccccgcaaagccatgtgggtgtacctggcggt 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24139043 gtctgaccccagcctgtctgtttctgtcccccgcaaagccatgtgggtgtacctggcggt 24138984

                                                                            
Query: 61       cctcgtgggcctgtactacctcctgcgctggcagcgggagaggcaggtggtgagccacct 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24138983 cctcgtgggcctgtactacctcctgcgctggcagcgggagaggcaggtggtgagccacct 24138924

                                                                            
Query: 121      gagggacaagtatgtcttcatcacgggctgtgactcgggcttcgggaacctgctggccag 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24138923 gagggacaagtatgtcttcatcacgggctgtgactcgggcttcgggaacctgctggccag 24138864

                                                                            
Query: 181      gcagctggacctgcggggcttgagggtcctggctgcatgtctgacggagcagggggccca 240
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24138863 gcagctggacctgcggggcttgagggtcctggctgcatgtctgacggagcagggggccca 24138804

                                                                            
Query: 241      gcagctgaggaagcagacgtcagacaggctggagacggtgctcctggacgtgaccaagac 300
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24138803 gcagctgaggaagcagacgtcagacaggctggagacggtgctcctggacgtgaccaagac 24138744

                                                                      
Query: 301      agagagcgtcgctgcggccaaggagtgggtgaaggagcgtgtgggggacagagg 354
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24138743 agagagcgtcgctgcggccaaggagtgggtgaaggagcgtgtgggggacagagg 24138690



 Score =  686 bits (346), Expect = 0.0
 Identities = 352/354 (99%)
 Strand = Plus / Plus

                                                                            
Query: 1        gtctgaccccagcctgtctgtttctgtcccccgcaaagccatgtgggtgtacctggcggt 60
                |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 24089403 gtctgaccccagcctgtctgtttctgtcccccgcaaagccatgtggctgtacctggtggt 24089462

                                                                            
Query: 61       cctcgtgggcctgtactacctcctgcgctggcagcgggagaggcaggtggtgagccacct 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24089463 cctcgtgggcctgtactacctcctgcgctggcagcgggagaggcaggtggtgagccacct 24089522

                                                                            
Query: 121      gagggacaagtatgtcttcatcacgggctgtgactcgggcttcgggaacctgctggccag 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24089523 gagggacaagtatgtcttcatcacgggctgtgactcgggcttcgggaacctgctggccag 24089582

                                                                            
Query: 181      gcagctggacctgcggggcttgagggtcctggctgcatgtctgacggagcagggggccca 240
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24089583 gcagctggacctgcggggcttgagggtcctggctgcatgtctgacggagcagggggccca 24089642

                                                                            
Query: 241      gcagctgaggaagcagacgtcagacaggctggagacggtgctcctggacgtgaccaagac 300
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24089643 gcagctgaggaagcagacgtcagacaggctggagacggtgctcctggacgtgaccaagac 24089702

                                                                      
Query: 301      agagagcgtcgctgcggccaaggagtgggtgaaggagcgtgtgggggacagagg 354
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24089703 agagagcgtcgctgcggccaaggagtgggtgaaggagcgtgtgggggacagagg 24089756



 Score =  670 bits (338), Expect = 0.0
 Identities = 350/354 (98%)
 Strand = Plus / Plus

                                                                            
Query: 1        gtctgaccccagcctgtctgtttctgtcccccgcaaagccatgtgggtgtacctggcggt 60
                |||| |||||||||||||||||||||||||| |||||||||||||| ||||||||| |||
Sbjct: 24100703 gtcttaccccagcctgtctgtttctgtcccctgcaaagccatgtggctgtacctggtggt 24100762

                                                                            
Query: 61       cctcgtgggcctgtactacctcctgcgctggcagcgggagaggcaggtggtgagccacct 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24100763 cctcgtgggcctgtactacctcctgcgctggcagcgggagaggcaggtggtgagccacct 24100822

                                                                            
Query: 121      gagggacaagtatgtcttcatcacgggctgtgactcgggcttcgggaacctgctggccag 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24100823 gagggacaagtatgtcttcatcacgggctgtgactcgggcttcgggaacctgctggccag 24100882

                                                                            
Query: 181      gcagctggacctgcggggcttgagggtcctggctgcatgtctgacggagcagggggccca 240
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24100883 gcagctggacctgcggggcttgagggtcctggctgcatgtctgacggagcagggggccca 24100942

                                                                            
Query: 241      gcagctgaggaagcagacgtcagacaggctggagacggtgctcctggacgtgaccaagac 300
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24100943 gcagctgaggaagcagacgtcagacaggctggagacggtgctcctggacgtgaccaagac 24101002

                                                                      
Query: 301      agagagcgtcgctgcggccaaggagtgggtgaaggagcgtgtgggggacagagg 354
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24101003 agagagcgtcgctgcggccaaggagtgggtgaaggagcgtgtgggggacagagg 24101056



 Score =  577 bits (291), Expect = e-162
 Identities = 303/307 (98%)
 Strand = Plus / Minus

                                                                            
Query: 48       tgtacctggcggtcctcgtgggcctgtactacctcctgcgctggcagcgggagaggcagg 107
                |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24131799 tgtacctggcagtcctcgtgggcctgtactacctcctgcgctggcagcgggagaggcagg 24131740

                                                                            
Query: 108      tggtgagccacctgagggacaagtatgtcttcatcacgggctgtgactcgggcttcggga 167
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24131739 tggtgagccacctgagggacaagtatgtcttcatcacgggctgtgactcgggcttcggga 24131680

                                                                            
Query: 168      acctgctggccaggcagctggacctgcggggcttgagggtcctggctgcatgtctgacgg 227
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24131679 acctgctggccaggcagctggacctgcggggcttgagggtcctggctgcatgtctgacgg 24131620

                                                                            
Query: 228      agcagggggcccagcagctgaggaagcagacgtcagacaggctggagacggtgctcctgg 287
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24131619 agcagggggcccagcagctgaggaagcagacgtcagacaggctggagacggtgctcctgg 24131560

                                                                            
Query: 288      acgtgaccaagacagagagcgtcgctgcggccaaggagtgggtgaaggagcgtgtggggg 347
                |||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||
Sbjct: 24131559 acgtgaccaagacagagagcgtcgctgcagccaaggagtgggtgaaggagtatgtggggg 24131500

                       
Query: 348      acagagg 354
                |||||||
Sbjct: 24131499 acagagg 24131493



 Score =  519 bits (262), Expect = e-145
 Identities = 262/262 (100%)
 Strand = Plus / Minus

                                                                            
Query: 352      aggactctggggcctggtgaacaatgctggcatctccgtaatctctgctcccaatgagtg 411
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24136267 aggactctggggcctggtgaacaatgctggcatctccgtaatctctgctcccaatgagtg 24136208

                                                                            
Query: 412      gctgaccaaacaggacttcgtgaagatattggatgtgaacctgttggggatggtcgacgt 471
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24136207 gctgaccaaacaggacttcgtgaagatattggatgtgaacctgttggggatggtcgacgt 24136148

                                                                            
Query: 472      gaccctgcagctgctgcccctcgtgaggaagaccaggggccgtgtggtcaacgtctccag 531
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24136147 gaccctgcagctgctgcccctcgtgaggaagaccaggggccgtgtggtcaacgtctccag 24136088

                                                                            
Query: 532      tgtcatgggccgggtgtccctctttggcggcggctactgcctgtccaagtacggtgttga 591
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24136087 tgtcatgggccgggtgtccctctttggcggcggctactgcctgtccaagtacggtgttga 24136028

                                      
Query: 592      ggccttctcagactccctcagg 613
                ||||||||||||||||||||||
Sbjct: 24136027 ggccttctcagactccctcagg 24136006



 Score =  464 bits (234), Expect = e-128
 Identities = 237/238 (99%)
 Strand = Plus / Minus

                                                                            
Query: 777      gtgagaaagcagtttgctcaatggagacaagttgcaatcaggatctctccttggtgactg 836
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24133880 gtgagaaagcagtttgctcaatggagacaagttgcaatcaggatctctccttggtgactg 24133821

                                                                            
Query: 837      actgcatggagcacgccctgacctcctgccacccccgcacgcgatactcacctggctggg 896
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24133820 actgcatggagcacgccctgacctcctgccacccccgcacgcgatactcacctggctggg 24133761

                                                                            
Query: 897      acgcccagctcttctacctccccatgagctacttgcccaccttcctcgtggatctcatga 956
                ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24133760 acgccaagctcttctacctccccatgagctacttgcccaccttcctcgtggatctcatga 24133701

                                                                          
Query: 957      tatactatggtgcccctaggcctgctaaggccctgtaacccaaactggggtacatggt 1014
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24133700 tatactatggtgcccctaggcctgctaaggccctgtaacccaaactggggtacatggt 24133643



 Score =  452 bits (228), Expect = e-124
 Identities = 294/316 (93%)
 Strand = Plus / Minus

                                                                            
Query: 39       ccatgtgggtgtacctggcggtcctcgtgggcctgtactacctcctgcgctggcagcggg 98
                |||||||| |||||||||| |||||||||||||||||||||||||| |||||| | ||||
Sbjct: 23785636 ccatgtggctgtacctggctgtcctcgtgggcctgtactacctccttcgctggtaccggg 23785577

                                                                            
Query: 99       agaggcaggtggtgagccacctgagggacaagtatgtcttcatcacgggctgtgactcgg 158
                | |||||| |||| ||||||||  |||| |||||||||||||||||||||||||||||||
Sbjct: 23785576 aaaggcagatggttagccaccttggggataagtatgtcttcatcacgggctgtgactcgg 23785517

                                                                            
Query: 159      gcttcgggaacctgctggccaggcagctggacctgcggggcttgagggtcctggctgcat 218
                |||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||
Sbjct: 23785516 gcttcgggaacctgctggccaggcagctggatgtgaggggcttgagggtcctggctgcat 23785457

                                                                            
Query: 219      gtctgacggagcagggggcccagcagctgaggaagcagacgtcagacaggctggagacgg 278
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23785456 gtctgacggagcagggggcccagcagctgaggaagcagacgtcagacaggctggagacgg 23785397

                                                                            
Query: 279      tgctcctggacgtgaccaagacagagagcgtcgctgcggccaaggagtgggtgaaggagc 338
                ||||| ||||||||||||||||||||||| | ||||| ||||   |||||||||||||||
Sbjct: 23785396 tgctcttggacgtgaccaagacagagagcattgctgcagccacccagtgggtgaaggagc 23785337

                                
Query: 339      gtgtgggggacagagg 354
                |||| |||||||||||
Sbjct: 23785336 gtgtcggggacagagg 23785321



 Score =  385 bits (194), Expect = e-104
 Identities = 245/262 (93%)
 Strand = Plus / Plus

                                                                            
Query: 352      aggactctggggcctggtgaacaatgctggcatctccgtaatctctgctcccaatgagtg 411
                ||||||||||||||||||||||||||||||||| | | |   |   ||||||||||||||
Sbjct: 24103183 aggactctggggcctggtgaacaatgctggcatttgcatgcccctggctcccaatgagtg 24103242

                                                                            
Query: 412      gctgaccaaacaggacttcgtgaagatattggatgtgaacctgttggggatggtcgacgt 471
                ||||||||| ||||||||| ||  |||  |||||||||||||||||||||||||||||||
Sbjct: 24103243 gctgaccaagcaggacttcatggtgatgctggatgtgaacctgttggggatggtcgacgt 24103302

                                                                            
Query: 472      gaccctgcagctgctgcccctcgtgaggaagaccaggggccgtgtggtcaacgtctccag 531
                ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 24103303 gaccctgcagctgctgcccctcgtgaggaagaccaagggccgtgtggtcaacgtctccag 24103362

                                                                            
Query: 532      tgtcatgggccgggtgtccctctttggcggcggctactgcctgtccaagtacggtgttga 591
                |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 24103363 tgtcatgggccgggtgtccctctttggcggcggctactgcctgtccaagtacggcgttga 24103422

                                      
Query: 592      ggccttctcagactccctcagg 613
                ||||||||||||||||||||||
Sbjct: 24103423 ggccttctcagactccctcagg 24103444



 Score =  361 bits (182), Expect = 5e-97
 Identities = 242/262 (92%)
 Strand = Plus / Plus

                                                                            
Query: 352      aggactctggggcctggtgaacaatgctggcatctccgtaatctctgctcccaatgagtg 411
                |||||||||||||||||||||||| |||||||| | |     |   ||||||| ||||||
Sbjct: 24091895 aggactctggggcctggtgaacaacgctggcatttgcacgcccctggctcccagtgagtg 24091954

                                                                            
Query: 412      gctgaccaaacaggacttcgtgaagatattggatgtgaacctgttggggatggtcgacgt 471
                ||||||||| ||||||||| ||  |||  |||||||||||||||||||||||||||||||
Sbjct: 24091955 gctgaccaagcaggacttcatggtgatgctggatgtgaacctgttggggatggtcgacgt 24092014

                                                                            
Query: 472      gaccctgcagctgctgcccctcgtgaggaagaccaggggccgtgtggtcaacgtctccag 531
                ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 24092015 gaccctgcagctgctgcccctcgtgaggaagaccaagggccgtgtggtcaacgtctccag 24092074

                                                                            
Query: 532      tgtcatgggccgggtgtccctctttggcggcggctactgcctgtccaagtacggtgttga 591
                |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 24092075 tgtcatgggccgggtgtccctctttggcggcggctactgcctgtccaagtacggcgttga 24092134

                                      
Query: 592      ggccttctcagactccctcagg 613
                ||||||||||||||||||||||
Sbjct: 24092135 ggccttctcagactccctcagg 24092156



 Score =  345 bits (174), Expect = 3e-92
 Identities = 192/198 (96%)
 Strand = Plus / Plus

                                                                            
Query: 1        gtctgaccccagcctgtctgtttctgtcccccgcaaagccatgtgggtgtacctggcggt 60
                |||| |||||||||||||||||||||||||| |||||||||||||| ||||||||| |||
Sbjct: 24097610 gtcttaccccagcctgtctgtttctgtcccctgcaaagccatgtggctgtacctggtggt 24097669

                                                                            
Query: 61       cctcgtgggcctgtactacctcctgcgctggcagcgggagaggcaggtggtgagccacct 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24097670 cctcgtgggcctgtactacctcctgcgctggcagcgggagaggcaggtggtgagccacct 24097729

                                                                            
Query: 121      gagggacaagtatgtcttcatcacgggctgtgactcgggcttcgggaacctgctggccag 180
                |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 24097730 gagggacaagtatgtcctcatcacgggctgtgactcggccttcgggaacctgctggccag 24097789

                                  
Query: 181      gcagctggacctgcgggg 198
                ||||||||||||||||||
Sbjct: 24097790 gcagctggacctgcgggg 24097807



 Score =  341 bits (172), Expect = 5e-91
 Identities = 172/172 (100%)
 Strand = Plus / Minus

                                                                            
Query: 610      caggagggagctctcctactttggggtgaaggtggctatgattgagcccggtttcttcaa 669
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24134577 caggagggagctctcctactttggggtgaaggtggctatgattgagcccggtttcttcaa 24134518

                                                                            
Query: 670      gaccaatgtaaccaaacctgaggcaatttctcagggctacaagacagcatggaatcaggc 729
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24134517 gaccaatgtaaccaaacctgaggcaatttctcagggctacaagacagcatggaatcaggc 24134458

                                                                    
Query: 730      cagcccagagatcaaggatctctatggggacacattcctggccttatgtgag 781
                ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24134457 cagcccagagatcaaggatctctatggggacacattcctggccttatgtgag 24134406



 Score =  323 bits (163), Expect = 1e-85
 Identities = 214/231 (92%)
 Strand = Plus / Minus

                                                                            
Query: 124      ggacaagtatgtcttcatcacgggctgtgactcgggcttcgggaacctgctggccaggca 183
                |||||| |||||||||||||||||||||||||  ||||| ||||| ||||||||||||||
Sbjct: 23894206 ggacaaatatgtcttcatcacgggctgtgacttaggctttgggaatctgctggccaggca 23894147

                                                                            
Query: 184      gctggacctgcggggcttgagggtcctggctgcatgtctgacggagcagggggcccagca 243
                |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 23894146 gctggacctgcggggcttgaaggtcctggctgcatgtctgacagagcagggggcccagca 23894087

                                                                            
Query: 244      gctgaggaagcagacgtcagacaggctggagacggtgctcctggacgtgaccaagacaga 303
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23894086 gctgaggaagcagacgtcagacaggctggagacggtgctcctggacgtgaccaagacaga 23894027

                                                                   
Query: 304      gagcgtcgctgcggccaaggagtgggtgaaggagcgtgtgggggacagagg 354
                |||||| | ||| ||||   ||||||  ||||||| |||||| ||||||||
Sbjct: 23894026 gagcgttgttgcagccactcagtgggaaaaggagcatgtgggagacagagg 23893976



 Score =  295 bits (149), Expect = 2e-77
 Identities = 167/173 (96%)
 Strand = Plus / Plus

                                                                            
Query: 827      ttggtgactgactgcatggagcacgccctgacctcctgccacccccgcacgcgatactca 886
                ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24105186 ttggtgaccaactgcatggagcacgccctgacctcctgccacccccgcacgcgatactca 24105245

                                                                            
Query: 887      cctggctgggacgcccagctcttctacctccccatgagctacttgcccaccttcctcgtg 946
                ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 24105246 cctggctgggacgccaagttcttctacctccccatgagctacttgcccaccttcctcgtg 24105305

                                                                     
Query: 947      gatctcatgatatactatggtgcccctaggcctgctaaggccctgtaacccaa 999
                ||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 24105306 gatctcatgatgtactatggtgcccctaggcctgctaaggtcctgtaacccaa 24105358



 Score =  272 bits (137), Expect = 3e-70
 Identities = 164/173 (94%)
 Strand = Plus / Plus

                                                                            
Query: 827      ttggtgactgactgcatggagcacgccctgacctcctgccacccccgcacgcgatactca 886
                ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24093901 ttggtgaccaactgcatggagcacgccctgacctcctgccacccccgcacgcgatactca 24093960

                                                                            
Query: 887      cctggctgggacgcccagctcttctacctccccatgagctacttgcccaccttcctcgtg 946
                ||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 24093961 cctggctgggacgccaagttcttctacctccccatgagctacttgcccaccttcctcatg 24094020

                                                                     
Query: 947      gatctcatgatatactatggtgcccctaggcctgctaaggccctgtaacccaa 999
                ||||||||||| |  ||||||||||||||||||||||||| ||||||||||||
Sbjct: 24094021 gatctcatgatgtgttatggtgcccctaggcctgctaaggtcctgtaacccaa 24094073



 Score =  256 bits (129), Expect = 2e-65
 Identities = 129/129 (100%)
 Strand = Plus / Plus

                                                                            
Query: 226      ggagcagggggcccagcagctgaggaagcagacgtcagacaggctggagacggtgctcct 285
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24097806 ggagcagggggcccagcagctgaggaagcagacgtcagacaggctggagacggtgctcct 24097865

                                                                            
Query: 286      ggacgtgaccaagacagagagcgtcgctgcggccaaggagtgggtgaaggagcgtgtggg 345
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24097866 ggacgtgaccaagacagagagcgtcgctgcggccaaggagtgggtgaaggagcgtgtggg 24097925

                         
Query: 346      ggacagagg 354
                |||||||||
Sbjct: 24097926 ggacagagg 24097934



 Score =  101 bits (51), Expect = 7e-19
 Identities = 63/67 (94%)
 Strand = Plus / Plus

                                                                            
Query: 610      caggagggagctctcctactttggggtgaaggtggctatgattgagcccggtttcttcaa 669
                |||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||| 
Sbjct: 24104407 caggagggagctctcctactttggggtgaaggtggctatgatcgagcctggcttcttcat 24104466

                       
Query: 670      gaccaat 676
                |||||||
Sbjct: 24104467 gaccaat 24104473



 Score = 97.6 bits (49), Expect = 1e-17
 Identities = 61/65 (93%)
 Strand = Plus / Minus

                                                                            
Query: 124      ggacaagtatgtcttcatcacgggctgtgactcgggcttcgggaacctgctggccaggca 183
                ||||||||||||||| ||||||||||||||||||||||| || ||||| |||||||||||
Sbjct: 24125271 ggacaagtatgtctttatcacgggctgtgactcgggctttggaaacctcctggccaggca 24125212

                     
Query: 184      gctgg 188
                |||||
Sbjct: 24125211 gctgg 24125207



 Score = 93.7 bits (47), Expect = 2e-16
 Identities = 62/67 (92%)
 Strand = Plus / Plus

                                                                            
Query: 610      caggagggagctctcctactttggggtgaaggtggctatgattgagcccggtttcttcaa 669
                ||||||||||||||||||||||||||||||||||||| |||| ||||| || ||||||| 
Sbjct: 24093119 caggagggagctctcctactttggggtgaaggtggctgtgatcgagcctggcttcttcat 24093178

                       
Query: 670      gaccaat 676
                |||||||
Sbjct: 24093179 gaccaat 24093185


>Sscrofa_Chr02 
||          Length = 162569375

 Score =  117 bits (59), Expect = 1e-23
 Identities = 119/139 (85%)
 Strand = Plus / Plus

                                                                            
Query: 861      cctgccacccccgcacgcgatactcacctggctgggacgcccagctcttctacctcccca 920
                ||||||||||| | ||  ||||||||||||||||||| |||  |||||||||||||||||
Sbjct: 59223391 cctgccacccctgtacctgatactcacctggctgggatgccgggctcttctacctcccca 59223450

                                                                            
Query: 921      tgagctacttgcccaccttcctcgtggatctcatgatatactatggtgcccctaggcctg 980
                ||| |||  ||| ||||||||| ||||||||||||||   |  ||||||||| || ||| 
Sbjct: 59223451 tgaactatctgctcaccttcctggtggatctcatgatggtccgtggtgccccaagacctt 59223510

                                   
Query: 981      ctaaggccctgtaacccaa 999
                |||||||||||||||||||
Sbjct: 59223511 ctaaggccctgtaacccaa 59223529



 Score = 97.6 bits (49), Expect = 1e-17
 Identities = 61/65 (93%)
 Strand = Plus / Plus

                                                                            
Query: 612      ggagggagctctcctactttggggtgaaggtggctatgattgagcccggtttcttcaaga 671
                ||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||| ||
Sbjct: 59223142 ggagggagctctcctacttcggggtgaaggtggctatgagtgagcctggtttcttcatga 59223201

                     
Query: 672      ccaat 676
                |||||
Sbjct: 59223202 ccaat 59223206


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,857,772
Number of extensions: 164
Number of successful extensions: 164
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 25
Length of query: 1014
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 993
Effective length of database: 2,808,413,156
Effective search space: 2788754263908
Effective search space used: 2788754263908
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)