Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012560
(1541 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070371.1| phosphoglucomutase-1 [Bos taurus]. 665 0.0
Alignment gi|NP_001095805.1| phosphoglucomutase-like protein 5 [Bos tauru... 486 e-137
Alignment gi|XP_002705027.1| PREDICTED: phosphoglucomutase 5-like [Bos ta... 457 e-128
>ref|NP_001070371.1| phosphoglucomutase-1 [Bos taurus].
Length = 562
Score = 665 bits (1717), Expect(2) = 0.0
Identities = 337/363 (92%), Positives = 338/363 (93%)
Frame = +2
Query: 155 MVKIVTVKTKAYQDQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPAHRQEATLVVG 334
MVKIVTVKTKAYQDQKPGTSGLRKRVKVFQSS+NYAENFIQSIISTVEPA RQEATLVVG
Sbjct: 1 MVKIVTVKTKAYQDQKPGTSGLRKRVKVFQSSSNYAENFIQSIISTVEPAQRQEATLVVG 60
Query: 335 GDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCXXXXXXXXXXXXLTASHNP 514
GDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSC LTASHNP
Sbjct: 61 GDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNP 120
Query: 515 GGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENK 694
GGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDL VDLGVLGKQQFDLENK
Sbjct: 121 GGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLHVDLGVLGKQQFDLENK 180
Query: 695 FKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEE 874
FKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEE
Sbjct: 181 FKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEE 240
Query: 875 LGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHXXXXXXXXXXXRNMILGKH 1054
LGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEH RNMILGKH
Sbjct: 241 LGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHDFGAAFDGDGDRNMILGKH 300
Query: 1055 GFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWK 1234
GFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWK
Sbjct: 301 GFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWK 360
Query: 1235 FFG 1243
FFG
Sbjct: 361 FFG 363
Score = 176 bits (447), Expect(2) = 0.0
Identities = 87/107 (81%), Positives = 92/107 (85%)
Frame = +1
Query: 1219 PNWLEVFWNLMDASKLSLCGEESFGNGSDHIREKDGLWAVLAWLSILATRKQSVEGHLKD 1398
P + F NLMDASKLSLCGEESFG GSDHIREKDGLWAVLAWLSILATRKQSVE LKD
Sbjct: 356 PTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKD 415
Query: 1399 HWQKYGPEFLPQYEYXEVEAEGAHKMMKELEALISDRSLWGEQFPVG 1539
HWQKYG F +Y+Y EVEAEGA+KMMKELEALISDRS G+QFPVG
Sbjct: 416 HWQKYGRNFFTRYDYEEVEAEGANKMMKELEALISDRSFVGKQFPVG 462
>ref|NP_001095805.1| phosphoglucomutase-like protein 5 [Bos taurus].
Length = 567
Score = 486 bits (1251), Expect = e-137
Identities = 230/381 (60%), Positives = 290/381 (76%), Gaps = 1/381 (0%)
Frame = +2
Query: 158 VKIVTVKTKAYQDQKP-GTSGLRKRVKVFQSSANYAENFIQSIISTVEPAHRQEATLVVG 334
+ ++TV T Y+DQ+P G GLR+ +F+ NY NFIQS++S+++ RQ T+VVG
Sbjct: 6 IPVLTVPTAPYEDQRPAGGGGLRRPTGLFEGQRNYLPNFIQSVLSSIDLRDRQGCTMVVG 65
Query: 335 GDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCXXXXXXXXXXXXLTASHNP 514
DGR++ + A +++V++AAANGIGRL+IGQNGILSTPAVSC LTASH P
Sbjct: 66 SDGRYFSRTATEIVVQMAAANGIGRLIIGQNGILSTPAVSCIIRKIKAAGGIILTASHCP 125
Query: 515 GGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENK 694
GGP G+FG+KFN++NGGPAP+ ++DKI+QISKTIEEY ICPDL++DL LG+Q+FDLENK
Sbjct: 126 GGPGGEFGVKFNVANGGPAPDVVSDKIYQISKTIEEYTICPDLRIDLSRLGRQEFDLENK 185
Query: 695 FKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEE 874
FKPF VEIVD V+ Y +LR IFDFNA+K LL+GP +LKIR+DAMHGV+GPYV+K+LC+E
Sbjct: 186 FKPFRVEIVDPVDIYLNLLRTIFDFNAIKSLLTGPGQLKIRVDAMHGVMGPYVRKVLCDE 245
Query: 875 LGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHXXXXXXXXXXXRNMILGKH 1054
LGAPANSA+NCVPLEDFGG HPDPNLTYA L+E MK GE+ R MILG++
Sbjct: 246 LGAPANSAINCVPLEDFGGQHPDPNLTYATTLLEAMKGGEYGFGAAFDADGDRYMILGQN 305
Query: 1055 GFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWK 1234
GFFV+PSDS+A+IAAN+ IPYF+Q GVRGF RSMPTS ALDRVA + K+ +YETP GW+
Sbjct: 306 GFFVSPSDSLAIIAANLSCIPYFRQMGVRGFGRSMPTSTALDRVAKSMKVPVYETPAGWR 365
Query: 1235 FFGI*WMQANCPFVGRRASET 1297
FF C G + T
Sbjct: 366 FFSNLMDSGRCSLCGEESFGT 386
Score = 130 bits (326), Expect = 4e-30
Identities = 58/101 (57%), Positives = 79/101 (78%)
Frame = +1
Query: 1237 FWNLMDASKLSLCGEESFGNGSDHIREKDGLWAVLAWLSILATRKQSVEGHLKDHWQKYG 1416
F NLMD+ + SLCGEESFG GSDH+REKDGLWAVL WLSI+A RKQSVE ++DHW K+G
Sbjct: 367 FSNLMDSGRCSLCGEESFGTGSDHLREKDGLWAVLVWLSIIAARKQSVEEIVRDHWAKFG 426
Query: 1417 PEFLPQYEYXEVEAEGAHKMMKELEALISDRSLWGEQFPVG 1539
+ +++Y +E + + +M++LEAL++D+S G+QF VG
Sbjct: 427 RHYYCRFDYEGLEPKTTYYIMRDLEALLTDKSFIGQQFAVG 467
>ref|XP_002705027.1| PREDICTED: phosphoglucomutase 5-like [Bos taurus].
Length = 348
Score = 457 bits (1176), Expect = e-128
Identities = 216/343 (62%), Positives = 271/343 (79%), Gaps = 1/343 (0%)
Frame = +2
Query: 158 VKIVTVKTKAYQDQKP-GTSGLRKRVKVFQSSANYAENFIQSIISTVEPAHRQEATLVVG 334
+ ++TV T Y+DQ+P G GLR+ +F+ NY NFIQS++S+++ RQ T+VVG
Sbjct: 6 IPVLTVPTAPYEDQRPAGGGGLRRPTGLFEGQRNYLPNFIQSVLSSIDLRDRQGCTMVVG 65
Query: 335 GDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCXXXXXXXXXXXXLTASHNP 514
DGR++ + A +++V++AAANGIGRL+IGQNGILSTPAVSC LTASH P
Sbjct: 66 SDGRYFSRTATEIVVQMAAANGIGRLIIGQNGILSTPAVSCIIRKIKAAGGIILTASHCP 125
Query: 515 GGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENK 694
GGP G+FG+KFN++NGGPAP+ ++DKI+QISKTIEEY ICPDL++DL LG+Q+FDLENK
Sbjct: 126 GGPGGEFGVKFNVANGGPAPDVVSDKIYQISKTIEEYTICPDLRIDLSRLGRQEFDLENK 185
Query: 695 FKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEE 874
FKPF VEIVD V+ Y +LR IFDFNA+K LL+GP +LKIR+DAMHGV+GPYV+K+LC+E
Sbjct: 186 FKPFRVEIVDPVDIYLNLLRTIFDFNAIKSLLTGPGQLKIRVDAMHGVMGPYVRKVLCDE 245
Query: 875 LGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHXXXXXXXXXXXRNMILGKH 1054
LGAPANSA+NCVPLEDFGG HPDPNLTYA L+E MK GE+ R MILG++
Sbjct: 246 LGAPANSAINCVPLEDFGGQHPDPNLTYATTLLEAMKGGEYGFGAAFDADGDRYMILGQN 305
Query: 1055 GFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDR 1183
GFFV+PSDS+A+IAAN+ IPYF+Q GVRGF RSMPTS ALDR
Sbjct: 306 GFFVSPSDSLAIIAANLSCIPYFRQMGVRGFGRSMPTSTALDR 348
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 58,289,165
Number of extensions: 1628554
Number of successful extensions: 4823
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4815
Number of HSP's successfully gapped: 5
Length of query: 513
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 406
Effective length of database: 14,140,958
Effective search space: 5741228948
Effective search space used: 5741228948
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012560
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012560
(1541 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_865342.1| PREDICTED: similar to Phosphoglucomutase 1 (Glu... 665 0.0
Alignment gi|XP_865359.1| PREDICTED: similar to phosphoglucomutase 1 isof... 599 0.0
Alignment gi|XP_536684.2| PREDICTED: similar to phosphoglucomutase 1 isof... 599 0.0
Alignment gi|XP_865309.1| PREDICTED: similar to Phosphoglucomutase 1 (Glu... 543 0.0
Alignment gi|XP_533534.2| PREDICTED: similar to phosphoglucomutase 5 [Can... 411 e-114
Alignment gi|XP_865293.1| PREDICTED: similar to phosphoglucomutase 1 isof... 153 5e-37
>ref|XP_865342.1| PREDICTED: similar to Phosphoglucomutase 1 (Glucose phosphomutase 1)
(PGM 1) isoform 4 [Canis familiaris].
Length = 562
Score = 665 bits (1716), Expect(2) = 0.0
Identities = 336/363 (92%), Positives = 338/363 (93%)
Frame = +2
Query: 155 MVKIVTVKTKAYQDQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPAHRQEATLVVG 334
MVKIVTVKT+AY DQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPA RQEATLVVG
Sbjct: 1 MVKIVTVKTRAYPDQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPAQRQEATLVVG 60
Query: 335 GDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCXXXXXXXXXXXXLTASHNP 514
GDGRFYMKEAIQLIVR+AAANGIGRLVIGQNGILSTPAVSC LTASHNP
Sbjct: 61 GDGRFYMKEAIQLIVRVAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNP 120
Query: 515 GGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENK 694
GGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENK
Sbjct: 121 GGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENK 180
Query: 695 FKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEE 874
FKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEE
Sbjct: 181 FKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEE 240
Query: 875 LGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHXXXXXXXXXXXRNMILGKH 1054
LGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEH RNMILGKH
Sbjct: 241 LGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHDFGAAFDGDGDRNMILGKH 300
Query: 1055 GFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWK 1234
GFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWK
Sbjct: 301 GFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWK 360
Query: 1235 FFG 1243
FFG
Sbjct: 361 FFG 363
Score = 170 bits (431), Expect(2) = 0.0
Identities = 84/107 (78%), Positives = 90/107 (84%)
Frame = +1
Query: 1219 PNWLEVFWNLMDASKLSLCGEESFGNGSDHIREKDGLWAVLAWLSILATRKQSVEGHLKD 1398
P + F NLMDASKLSLCGEESFG GSDHIREKDGLWAVLAWLSILA RKQSVE LKD
Sbjct: 356 PTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILAARKQSVEDILKD 415
Query: 1399 HWQKYGPEFLPQYEYXEVEAEGAHKMMKELEALISDRSLWGEQFPVG 1539
HWQKYG F +Y+Y EVEAEGA+KMMK+LEALISDRS G+QF VG
Sbjct: 416 HWQKYGRNFFTRYDYEEVEAEGANKMMKDLEALISDRSFVGKQFSVG 462
>ref|XP_865359.1| PREDICTED: similar to phosphoglucomutase 1 isoform 5 [Canis
familiaris].
Length = 580
Score = 599 bits (1545), Expect(2) = 0.0
Identities = 299/360 (83%), Positives = 316/360 (87%)
Frame = +2
Query: 164 IVTVKTKAYQDQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPAHRQEATLVVGGDG 343
++T T Y DQKPGTSGLRK+ F++ Y ENFIQS+ +++ RQ +++VVGGDG
Sbjct: 22 LLTFATAPYYDQKPGTSGLRKKTYCFEAKPCYLENFIQSLFFSIDLKDRQGSSMVVGGDG 81
Query: 344 RFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCXXXXXXXXXXXXLTASHNPGGP 523
R++ K AI+ IV++AAANGIGRLVIGQNGILSTPAVSC LTASHNPGGP
Sbjct: 82 RYFNKSAIETIVQMAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNPGGP 141
Query: 524 NGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKP 703
NGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKP
Sbjct: 142 NGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKP 201
Query: 704 FTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGA 883
FTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGA
Sbjct: 202 FTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGA 261
Query: 884 PANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHXXXXXXXXXXXRNMILGKHGFF 1063
PANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEH RNMILGKHGFF
Sbjct: 262 PANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHDFGAAFDGDGDRNMILGKHGFF 321
Query: 1064 VNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFG 1243
VNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFG
Sbjct: 322 VNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFG 381
Score = 170 bits (431), Expect(2) = 0.0
Identities = 84/107 (78%), Positives = 90/107 (84%)
Frame = +1
Query: 1219 PNWLEVFWNLMDASKLSLCGEESFGNGSDHIREKDGLWAVLAWLSILATRKQSVEGHLKD 1398
P + F NLMDASKLSLCGEESFG GSDHIREKDGLWAVLAWLSILA RKQSVE LKD
Sbjct: 374 PTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILAARKQSVEDILKD 433
Query: 1399 HWQKYGPEFLPQYEYXEVEAEGAHKMMKELEALISDRSLWGEQFPVG 1539
HWQKYG F +Y+Y EVEAEGA+KMMK+LEALISDRS G+QF VG
Sbjct: 434 HWQKYGRNFFTRYDYEEVEAEGANKMMKDLEALISDRSFVGKQFSVG 480
>ref|XP_536684.2| PREDICTED: similar to phosphoglucomutase 1 isoform 1 [Canis
familiaris].
Length = 580
Score = 599 bits (1545), Expect(2) = 0.0
Identities = 299/360 (83%), Positives = 316/360 (87%)
Frame = +2
Query: 164 IVTVKTKAYQDQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPAHRQEATLVVGGDG 343
++T T Y DQKPGTSGLRK+ F++ Y ENFIQS+ +++ RQ +++VVGGDG
Sbjct: 22 LLTFATAPYYDQKPGTSGLRKKTYCFEAKPCYLENFIQSLFFSIDLKDRQGSSMVVGGDG 81
Query: 344 RFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCXXXXXXXXXXXXLTASHNPGGP 523
R++ K AI+ IV++AAANGIGRLVIGQNGILSTPAVSC LTASHNPGGP
Sbjct: 82 RYFNKSAIETIVQMAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNPGGP 141
Query: 524 NGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKP 703
NGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKP
Sbjct: 142 NGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKP 201
Query: 704 FTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGA 883
FTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGA
Sbjct: 202 FTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGA 261
Query: 884 PANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHXXXXXXXXXXXRNMILGKHGFF 1063
PANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEH RNMILGKHGFF
Sbjct: 262 PANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHDFGAAFDGDGDRNMILGKHGFF 321
Query: 1064 VNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFG 1243
VNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFG
Sbjct: 322 VNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFG 381
Score = 170 bits (431), Expect(2) = 0.0
Identities = 84/107 (78%), Positives = 90/107 (84%)
Frame = +1
Query: 1219 PNWLEVFWNLMDASKLSLCGEESFGNGSDHIREKDGLWAVLAWLSILATRKQSVEGHLKD 1398
P + F NLMDASKLSLCGEESFG GSDHIREKDGLWAVLAWLSILA RKQSVE LKD
Sbjct: 374 PTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILAARKQSVEDILKD 433
Query: 1399 HWQKYGPEFLPQYEYXEVEAEGAHKMMKELEALISDRSLWGEQFPVG 1539
HWQKYG F +Y+Y EVEAEGA+KMMK+LEALISDRS G+QF VG
Sbjct: 434 HWQKYGRNFFTRYDYEEVEAEGANKMMKDLEALISDRSFVGKQFSVG 480
>ref|XP_865309.1| PREDICTED: similar to Phosphoglucomutase 1 (Glucose phosphomutase 1)
(PGM 1) isoform 3 [Canis familiaris].
Length = 513
Score = 543 bits (1400), Expect(2) = 0.0
Identities = 287/363 (79%), Positives = 289/363 (79%)
Frame = +2
Query: 155 MVKIVTVKTKAYQDQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPAHRQEATLVVG 334
MVKIVTVKT+AY DQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPA RQEATLVVG
Sbjct: 1 MVKIVTVKTRAYPDQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPAQRQEATLVVG 60
Query: 335 GDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCXXXXXXXXXXXXLTASHNP 514
GDGRFYMKEAIQLIVR+AAANGIGRLVIGQNGILSTPAVSC LTASHNP
Sbjct: 61 GDGRFYMKEAIQLIVRVAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNP 120
Query: 515 GGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENK 694
GGPNGDFGIKFNISNG
Sbjct: 121 GGPNGDFGIKFNISNG-------------------------------------------- 136
Query: 695 FKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEE 874
VEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEE
Sbjct: 137 -----VEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEE 191
Query: 875 LGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHXXXXXXXXXXXRNMILGKH 1054
LGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEH RNMILGKH
Sbjct: 192 LGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHDFGAAFDGDGDRNMILGKH 251
Query: 1055 GFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWK 1234
GFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWK
Sbjct: 252 GFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWK 311
Query: 1235 FFG 1243
FFG
Sbjct: 312 FFG 314
Score = 170 bits (431), Expect(2) = 0.0
Identities = 84/107 (78%), Positives = 90/107 (84%)
Frame = +1
Query: 1219 PNWLEVFWNLMDASKLSLCGEESFGNGSDHIREKDGLWAVLAWLSILATRKQSVEGHLKD 1398
P + F NLMDASKLSLCGEESFG GSDHIREKDGLWAVLAWLSILA RKQSVE LKD
Sbjct: 307 PTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILAARKQSVEDILKD 366
Query: 1399 HWQKYGPEFLPQYEYXEVEAEGAHKMMKELEALISDRSLWGEQFPVG 1539
HWQKYG F +Y+Y EVEAEGA+KMMK+LEALISDRS G+QF VG
Sbjct: 367 HWQKYGRNFFTRYDYEEVEAEGANKMMKDLEALISDRSFVGKQFSVG 413
>ref|XP_533534.2| PREDICTED: similar to phosphoglucomutase 5 [Canis familiaris].
Length = 494
Score = 411 bits (1056), Expect = e-114
Identities = 195/299 (65%), Positives = 233/299 (77%)
Frame = +2
Query: 401 IGRLVIGQNGILSTPAVSCXXXXXXXXXXXXLTASHNPGGPNGDFGIKFNISNGGPAPEA 580
IGRL+IGQNGILSTPAVSC LTASH PGGP G+FG+KFN++NGGPAP+
Sbjct: 15 IGRLIIGQNGILSTPAVSCIIRKIKAAGGIILTASHCPGGPGGEFGVKFNVANGGPAPDV 74
Query: 581 ITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKPFTVEIVDSVEAYATMLRNI 760
++DKI+QISKTIEEYAICPDL++DL LG+Q+FDLENKFKPF VEIVD V+ Y +LR I
Sbjct: 75 VSDKIYQISKTIEEYAICPDLRIDLSRLGRQEFDLENKFKPFRVEIVDPVDIYLNLLRTI 134
Query: 761 FDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGAPANSAVNCVPLEDFGGHHP 940
FDFNA+K LL+GP +LKIR+DAMHGV+GPYV+K+LC+ELGAPANSA+NCVPLEDFGG HP
Sbjct: 135 FDFNAIKSLLTGPGQLKIRVDAMHGVMGPYVRKVLCDELGAPANSAINCVPLEDFGGQHP 194
Query: 941 DPNLTYAADLVETMKTGEHXXXXXXXXXXXRNMILGKHGFFVNPSDSVAVIAANIFSIPY 1120
DPNLTYA L+E MK GE+ R MILG++GFFV+PSDS+A+IAAN+ IPY
Sbjct: 195 DPNLTYATTLLEAMKGGEYGFGAAFDADGDRYMILGRNGFFVSPSDSLAIIAANLPCIPY 254
Query: 1121 FQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFGI*WMQANCPFVGRRASET 1297
F+Q GVRGF RSMPTS ALDRVA + K+ +YETP GW+FF C G + T
Sbjct: 255 FRQMGVRGFGRSMPTSMALDRVAKSMKVPVYETPAGWRFFSNLMDSGRCSLCGEESFGT 313
Score = 131 bits (329), Expect = 2e-30
Identities = 59/101 (58%), Positives = 79/101 (78%)
Frame = +1
Query: 1237 FWNLMDASKLSLCGEESFGNGSDHIREKDGLWAVLAWLSILATRKQSVEGHLKDHWQKYG 1416
F NLMD+ + SLCGEESFG GSDH+REKDGLWAVL WLSILA RKQSVE ++DHW K+G
Sbjct: 294 FSNLMDSGRCSLCGEESFGTGSDHLREKDGLWAVLVWLSILAARKQSVEEIVRDHWAKFG 353
Query: 1417 PEFLPQYEYXEVEAEGAHKMMKELEALISDRSLWGEQFPVG 1539
+ +++Y +E + + +M++LEAL++D+S G+QF VG
Sbjct: 354 RHYYCRFDYEGLEPKTTYYIMRDLEALVTDKSFIGQQFAVG 394
>ref|XP_865293.1| PREDICTED: similar to phosphoglucomutase 1 isoform 2 [Canis
familiaris].
Length = 90
Score = 153 bits (386), Expect = 5e-37
Identities = 78/82 (95%), Positives = 80/82 (97%)
Frame = +2
Query: 155 MVKIVTVKTKAYQDQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPAHRQEATLVVG 334
MVKIVTVKT+AY DQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPA RQEATLVVG
Sbjct: 1 MVKIVTVKTRAYPDQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPAQRQEATLVVG 60
Query: 335 GDGRFYMKEAIQLIVRIAAANG 400
GDGRFYMKEAIQLIVR+AAANG
Sbjct: 61 GDGRFYMKEAIQLIVRVAAANG 82
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 61,086,764
Number of extensions: 1687623
Number of successful extensions: 5001
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4998
Number of HSP's successfully gapped: 12
Length of query: 513
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 406
Effective length of database: 15,307,552
Effective search space: 6214866112
Effective search space used: 6214866112
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012560
(1541 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127993.1| PREDICTED: phosphoglucomutase-1 isoform 1 [S... 681 0.0
Alignment gi|XP_003127994.1| PREDICTED: phosphoglucomutase-1 isoform 2 [S... 601 0.0
Alignment gi|XP_003121981.2| PREDICTED: phosphoglucomutase-like protein 5... 414 e-116
Alignment gi|XP_003361355.1| PREDICTED: phosphoglucomutase-like protein 5... 218 9e-57
Alignment gi|XP_003121980.2| PREDICTED: phosphoglucomutase-like protein 5... 158 9e-39
Alignment gi|XP_003121984.2| PREDICTED: phosphoglucomutase-like protein 5... 130 2e-30
>ref|XP_003127993.1| PREDICTED: phosphoglucomutase-1 isoform 1 [Sus scrofa].
Length = 590
Score = 681 bits (1758), Expect(2) = 0.0
Identities = 345/368 (93%), Positives = 345/368 (93%)
Frame = +2
Query: 140 KQTATMVKIVTVKTKAYQDQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPAHRQEA 319
KQTATMVKIVTVKTKAYQDQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPAHRQEA
Sbjct: 24 KQTATMVKIVTVKTKAYQDQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPAHRQEA 83
Query: 320 TLVVGGDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCXXXXXXXXXXXXLT 499
TLVVGGDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSC LT
Sbjct: 84 TLVVGGDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILT 143
Query: 500 ASHNPGGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQF 679
ASHNPGGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQF
Sbjct: 144 ASHNPGGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQF 203
Query: 680 DLENKFKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKK 859
DLENKFKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKK
Sbjct: 204 DLENKFKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKK 263
Query: 860 ILCEELGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHXXXXXXXXXXXRNM 1039
ILCEELGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEH RNM
Sbjct: 264 ILCEELGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHDFGAAFDGDGDRNM 323
Query: 1040 ILGKHGFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYET 1219
ILGKHGFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYET
Sbjct: 324 ILGKHGFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYET 383
Query: 1220 PTGWKFFG 1243
PTGWKFFG
Sbjct: 384 PTGWKFFG 391
Score = 176 bits (447), Expect(2) = 0.0
Identities = 87/107 (81%), Positives = 92/107 (85%)
Frame = +1
Query: 1219 PNWLEVFWNLMDASKLSLCGEESFGNGSDHIREKDGLWAVLAWLSILATRKQSVEGHLKD 1398
P + F NLMDASKLSLCGEESFG GSDHIREKDGLWAVLAWLSILATRKQSVE LKD
Sbjct: 384 PTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKD 443
Query: 1399 HWQKYGPEFLPQYEYXEVEAEGAHKMMKELEALISDRSLWGEQFPVG 1539
HWQKYG F +Y+Y EVEAEGA+KMMKELEALISDRS G+QFPVG
Sbjct: 444 HWQKYGRNFFTRYDYEEVEAEGANKMMKELEALISDRSFVGKQFPVG 490
>ref|XP_003127994.1| PREDICTED: phosphoglucomutase-1 isoform 2 [Sus scrofa].
Length = 580
Score = 601 bits (1549), Expect(2) = 0.0
Identities = 301/360 (83%), Positives = 316/360 (87%)
Frame = +2
Query: 164 IVTVKTKAYQDQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPAHRQEATLVVGGDG 343
++T T Y DQKPGTSGLRK+ F++ Y ENFIQSI +++ RQ ++LVVGGDG
Sbjct: 22 LLTFTTAPYYDQKPGTSGLRKKTYFFEAKPCYLENFIQSIFFSIDLKDRQGSSLVVGGDG 81
Query: 344 RFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCXXXXXXXXXXXXLTASHNPGGP 523
R++ K AI+ IV++AAANGIGRLVIGQNGILSTPAVSC LTASHNPGGP
Sbjct: 82 RYFNKSAIETIVQMAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNPGGP 141
Query: 524 NGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKP 703
NGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKP
Sbjct: 142 NGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKP 201
Query: 704 FTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGA 883
FTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGA
Sbjct: 202 FTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGA 261
Query: 884 PANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHXXXXXXXXXXXRNMILGKHGFF 1063
PANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEH RNMILGKHGFF
Sbjct: 262 PANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHDFGAAFDGDGDRNMILGKHGFF 321
Query: 1064 VNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFG 1243
VNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFG
Sbjct: 322 VNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFG 381
Score = 176 bits (447), Expect(2) = 0.0
Identities = 87/107 (81%), Positives = 92/107 (85%)
Frame = +1
Query: 1219 PNWLEVFWNLMDASKLSLCGEESFGNGSDHIREKDGLWAVLAWLSILATRKQSVEGHLKD 1398
P + F NLMDASKLSLCGEESFG GSDHIREKDGLWAVLAWLSILATRKQSVE LKD
Sbjct: 374 PTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKD 433
Query: 1399 HWQKYGPEFLPQYEYXEVEAEGAHKMMKELEALISDRSLWGEQFPVG 1539
HWQKYG F +Y+Y EVEAEGA+KMMKELEALISDRS G+QFPVG
Sbjct: 434 HWQKYGRNFFTRYDYEEVEAEGANKMMKELEALISDRSFVGKQFPVG 480
>ref|XP_003121981.2| PREDICTED: phosphoglucomutase-like protein 5-like [Sus scrofa].
Length = 539
Score = 414 bits (1064), Expect = e-116
Identities = 196/300 (65%), Positives = 234/300 (78%)
Frame = +2
Query: 398 GIGRLVIGQNGILSTPAVSCXXXXXXXXXXXXLTASHNPGGPNGDFGIKFNISNGGPAPE 577
GIGRL+IGQNGILSTPAVSC LTASH PGGP G+FG+KFN++NGGPAP+
Sbjct: 59 GIGRLIIGQNGILSTPAVSCIIRKIKAAGGIILTASHCPGGPGGEFGVKFNVANGGPAPD 118
Query: 578 AITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKPFTVEIVDSVEAYATMLRN 757
++DKI+QISKTIEEYAICPDL++DL LG+Q+FDLENKFKPF VEIVD V+ Y +LR
Sbjct: 119 VVSDKIYQISKTIEEYAICPDLRIDLSRLGRQEFDLENKFKPFRVEIVDPVDIYLNLLRT 178
Query: 758 IFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGAPANSAVNCVPLEDFGGHH 937
IFDFNA+K LL+GP +LKIR+DAMHGV+GPYV+K+LC+ELGAPANSA+NCVPLEDFGG H
Sbjct: 179 IFDFNAIKSLLTGPGQLKIRVDAMHGVMGPYVRKVLCDELGAPANSAINCVPLEDFGGQH 238
Query: 938 PDPNLTYAADLVETMKTGEHXXXXXXXXXXXRNMILGKHGFFVNPSDSVAVIAANIFSIP 1117
PDPNLTYA L+E MK GE+ R MILG++GFFV+PSDS+A+IAAN+ IP
Sbjct: 239 PDPNLTYATTLLEAMKGGEYGFGAAFDADGDRYMILGQNGFFVSPSDSLAIIAANLSCIP 298
Query: 1118 YFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFGI*WMQANCPFVGRRASET 1297
YF+Q GVRGF RSMPTS ALDRVA + K+ +YETP GW+FF C G + T
Sbjct: 299 YFRQMGVRGFGRSMPTSTALDRVAKSMKVPVYETPAGWRFFSNLMDSGRCSLCGEESFGT 358
Score = 130 bits (327), Expect = 2e-30
Identities = 58/101 (57%), Positives = 79/101 (78%)
Frame = +1
Query: 1237 FWNLMDASKLSLCGEESFGNGSDHIREKDGLWAVLAWLSILATRKQSVEGHLKDHWQKYG 1416
F NLMD+ + SLCGEESFG GSDH+REKDGLWAVL WLSI+A RKQSVE ++DHW K+G
Sbjct: 339 FSNLMDSGRCSLCGEESFGTGSDHLREKDGLWAVLVWLSIIAARKQSVEEIVRDHWAKFG 398
Query: 1417 PEFLPQYEYXEVEAEGAHKMMKELEALISDRSLWGEQFPVG 1539
+ +++Y +E + + +M++LEAL++D+S G+QF VG
Sbjct: 399 RHYYCRFDYEGLEPKTTYYIMRDLEALVTDKSFIGQQFAVG 439
>ref|XP_003361355.1| PREDICTED: phosphoglucomutase-like protein 5-like, partial [Sus
scrofa].
Length = 148
Score = 218 bits (554), Expect = 9e-57
Identities = 101/145 (69%), Positives = 120/145 (82%)
Frame = +2
Query: 401 IGRLVIGQNGILSTPAVSCXXXXXXXXXXXXLTASHNPGGPNGDFGIKFNISNGGPAPEA 580
IGRL+IGQNGILSTPAVSC LTASH PGGP G+FG+KFN++NGGPAP+
Sbjct: 4 IGRLIIGQNGILSTPAVSCIIRKIKAAGGIILTASHCPGGPGGEFGVKFNVANGGPAPDV 63
Query: 581 ITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKPFTVEIVDSVEAYATMLRNI 760
++DKI+QISKTIEEYAICPDL++DL LG+Q+FDLENKFKPF VEIVD V+ Y +LR I
Sbjct: 64 VSDKIYQISKTIEEYAICPDLRIDLSRLGRQEFDLENKFKPFRVEIVDPVDIYLNLLRTI 123
Query: 761 FDFNALKELLSGPNRLKIRIDAMHG 835
FDFNA+K LL+GP +LKIR+DAMHG
Sbjct: 124 FDFNAIKSLLTGPGQLKIRVDAMHG 148
>ref|XP_003121980.2| PREDICTED: phosphoglucomutase-like protein 5-like [Sus scrofa].
Length = 213
Score = 158 bits (399), Expect = 9e-39
Identities = 72/102 (70%), Positives = 85/102 (83%)
Frame = +2
Query: 401 IGRLVIGQNGILSTPAVSCXXXXXXXXXXXXLTASHNPGGPNGDFGIKFNISNGGPAPEA 580
IGRL+IGQNGILSTPAVSC LTASH PGGP G+FG+KFN++NGGPAP+
Sbjct: 16 IGRLIIGQNGILSTPAVSCIIRKIKAAGGIILTASHCPGGPGGEFGVKFNVANGGPAPDV 75
Query: 581 ITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKPF 706
++DKI+QISKTIEEYAICPDL++DL LG+Q+FDLENKFKPF
Sbjct: 76 VSDKIYQISKTIEEYAICPDLRIDLSRLGRQEFDLENKFKPF 117
>ref|XP_003121984.2| PREDICTED: phosphoglucomutase-like protein 5-like [Sus scrofa].
Length = 312
Score = 130 bits (327), Expect = 2e-30
Identities = 58/101 (57%), Positives = 79/101 (78%)
Frame = +1
Query: 1237 FWNLMDASKLSLCGEESFGNGSDHIREKDGLWAVLAWLSILATRKQSVEGHLKDHWQKYG 1416
F NLMD+ + SLCGEESFG GSDH+REKDGLWAVL WLSI+A RKQSVE ++DHW K+G
Sbjct: 32 FSNLMDSGRCSLCGEESFGTGSDHLREKDGLWAVLVWLSIIAARKQSVEEIVRDHWAKFG 91
Query: 1417 PEFLPQYEYXEVEAEGAHKMMKELEALISDRSLWGEQFPVG 1539
+ +++Y +E + + +M++LEAL++D+S G+QF VG
Sbjct: 92 RHYYCRFDYEGLEPKTTYYIMRDLEALVTDKSFIGQQFAVG 132
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 37,630,825
Number of extensions: 1052495
Number of successful extensions: 3225
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3225
Number of HSP's successfully gapped: 9
Length of query: 513
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 410
Effective length of database: 8,779,541
Effective search space: 3599611810
Effective search space used: 3599611810
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012560
(1541 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082408.3| phosphoglucomutase-1 [Mus musculus]. 659 0.0
Alignment gi|NP_778178.3| phosphoglucomutase-like protein 5 [Mus musculus]. 490 e-138
>ref|NP_082408.3| phosphoglucomutase-1 [Mus musculus].
Length = 562
Score = 659 bits (1699), Expect(2) = 0.0
Identities = 333/363 (91%), Positives = 337/363 (92%)
Frame = +2
Query: 155 MVKIVTVKTKAYQDQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPAHRQEATLVVG 334
MVKIVTVKT+AY DQKPGTSGLRKRVKVFQS+ANYAENFIQSI+STVEPA RQEATLVVG
Sbjct: 1 MVKIVTVKTQAYPDQKPGTSGLRKRVKVFQSNANYAENFIQSIVSTVEPALRQEATLVVG 60
Query: 335 GDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCXXXXXXXXXXXXLTASHNP 514
GDGRFYM EAIQLIVRIAAANGIGRLVIGQNGILSTPAVSC LTASHNP
Sbjct: 61 GDGRFYMTEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNP 120
Query: 515 GGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENK 694
GGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENK
Sbjct: 121 GGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENK 180
Query: 695 FKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEE 874
FKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEE
Sbjct: 181 FKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEE 240
Query: 875 LGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHXXXXXXXXXXXRNMILGKH 1054
LGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMK+GEH RNMILGKH
Sbjct: 241 LGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKSGEHDFGAAFDGDGDRNMILGKH 300
Query: 1055 GFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWK 1234
GFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWK
Sbjct: 301 GFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWK 360
Query: 1235 FFG 1243
FFG
Sbjct: 361 FFG 363
Score = 164 bits (414), Expect(2) = 0.0
Identities = 80/104 (76%), Positives = 88/104 (84%)
Frame = +1
Query: 1219 PNWLEVFWNLMDASKLSLCGEESFGNGSDHIREKDGLWAVLAWLSILATRKQSVEGHLKD 1398
P + F NLMDASKLSLCGEESFG GSDHIREKDGLWAVLAWLSILATRKQSVE LKD
Sbjct: 356 PTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKD 415
Query: 1399 HWQKYGPEFLPQYEYXEVEAEGAHKMMKELEALISDRSLWGEQF 1530
HWQK+G F +Y+Y EVEAEGA+KMMK+LEAL+ DRS G+QF
Sbjct: 416 HWQKFGRNFFTRYDYEEVEAEGANKMMKDLEALMLDRSFVGKQF 459
>ref|NP_778178.3| phosphoglucomutase-like protein 5 [Mus musculus].
Length = 567
Score = 490 bits (1262), Expect = e-138
Identities = 232/381 (60%), Positives = 293/381 (76%), Gaps = 1/381 (0%)
Frame = +2
Query: 158 VKIVTVKTKAYQDQKP-GTSGLRKRVKVFQSSANYAENFIQSIISTVEPAHRQEATLVVG 334
+ ++TV T Y+DQ+P G GLR+ +F+ NY NFIQS++S+++ RQ T+VVG
Sbjct: 6 IPVLTVPTAPYEDQRPTGGGGLRRPTGLFEGQRNYLPNFIQSVLSSIDLRDRQGCTMVVG 65
Query: 335 GDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCXXXXXXXXXXXXLTASHNP 514
DGR++ + A +++V++AAANGIGRL+IGQNGILSTPAVSC LTASH P
Sbjct: 66 SDGRYFSRTATEIVVQMAAANGIGRLIIGQNGILSTPAVSCIIRKIKAAGGIILTASHCP 125
Query: 515 GGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENK 694
GGP G+FG+KFN++NGGPAP+ ++DKI+QISKTIEEYAICPDL++DL LG+Q+FDLENK
Sbjct: 126 GGPGGEFGVKFNVANGGPAPDVVSDKIYQISKTIEEYAICPDLRIDLSRLGRQEFDLENK 185
Query: 695 FKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEE 874
FKPF VEIVD V+ Y +LRNIFDFNA+K LL+GP++LKIR+DAMHGV+GPYV+K+LC+E
Sbjct: 186 FKPFRVEIVDPVDIYLNLLRNIFDFNAIKSLLTGPSQLKIRVDAMHGVMGPYVRKVLCDE 245
Query: 875 LGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHXXXXXXXXXXXRNMILGKH 1054
LGAPANSA+NCVPLEDFGG HPDPNLTYA L+E MK GE+ R MILG++
Sbjct: 246 LGAPANSAINCVPLEDFGGQHPDPNLTYATTLLEAMKGGEYGFGAAFDADGDRYMILGQN 305
Query: 1055 GFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWK 1234
GFFV+PSDS+A+IAAN+ IPYF+Q GVRGF RSMPTS ALDRVA + K+ +YETP GW+
Sbjct: 306 GFFVSPSDSLAIIAANLSCIPYFRQMGVRGFGRSMPTSTALDRVAKSMKVPVYETPAGWR 365
Query: 1235 FFGI*WMQANCPFVGRRASET 1297
FF C G + T
Sbjct: 366 FFSNLMDSGRCSLCGEESFGT 386
Score = 132 bits (333), Expect = 6e-31
Identities = 59/101 (58%), Positives = 79/101 (78%)
Frame = +1
Query: 1237 FWNLMDASKLSLCGEESFGNGSDHIREKDGLWAVLAWLSILATRKQSVEGHLKDHWQKYG 1416
F NLMD+ + SLCGEESFG GSDH+REKDGLWAVL WLSI+A RKQSVE ++DHW KYG
Sbjct: 367 FSNLMDSGRCSLCGEESFGTGSDHLREKDGLWAVLVWLSIIAARKQSVEEIVRDHWAKYG 426
Query: 1417 PEFLPQYEYXEVEAEGAHKMMKELEALISDRSLWGEQFPVG 1539
+ +++Y +E + + +M++LEAL++D+S G+QF VG
Sbjct: 427 RHYYCRFDYEGLEPKATYYIMRDLEALVTDKSFIGQQFAVG 467
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 50,581,793
Number of extensions: 1384593
Number of successful extensions: 4160
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4158
Number of HSP's successfully gapped: 4
Length of query: 513
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 407
Effective length of database: 12,433,743
Effective search space: 5060533401
Effective search space used: 5060533401
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012560
(1541 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002624.2| phosphoglucomutase-1 isoform 1 [Homo sapiens]. 658 0.0
Alignment gi|NP_001166289.1| phosphoglucomutase-1 isoform 2 [Homo sapiens]. 593 0.0
Alignment gi|NP_068800.2| phosphoglucomutase-like protein 5 [Homo sapiens]. 487 e-137
Alignment gi|NP_001166290.1| phosphoglucomutase-1 isoform 3 [Homo sapiens]. 308 e-126
>ref|NP_002624.2| phosphoglucomutase-1 isoform 1 [Homo sapiens].
Length = 562
Score = 658 bits (1698), Expect(2) = 0.0
Identities = 332/363 (91%), Positives = 338/363 (93%)
Frame = +2
Query: 155 MVKIVTVKTKAYQDQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPAHRQEATLVVG 334
MVKIVTVKT+AYQDQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPA RQEATLVVG
Sbjct: 1 MVKIVTVKTQAYQDQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPAQRQEATLVVG 60
Query: 335 GDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCXXXXXXXXXXXXLTASHNP 514
GDGRFYMKEAIQLI RIAAANGIGRLVIGQNGILSTPAVSC LTASHNP
Sbjct: 61 GDGRFYMKEAIQLIARIAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNP 120
Query: 515 GGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENK 694
GGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYA+CPDLKVDLGVLGKQQFDLENK
Sbjct: 121 GGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAVCPDLKVDLGVLGKQQFDLENK 180
Query: 695 FKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEE 874
FKPFTVEIVDSVEAYATMLR+IFDF+ALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEE
Sbjct: 181 FKPFTVEIVDSVEAYATMLRSIFDFSALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEE 240
Query: 875 LGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHXXXXXXXXXXXRNMILGKH 1054
LGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMK+GEH RNMILGKH
Sbjct: 241 LGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKSGEHDFGAAFDGDGDRNMILGKH 300
Query: 1055 GFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWK 1234
GFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVA+ATKIALYETPTGWK
Sbjct: 301 GFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVASATKIALYETPTGWK 360
Query: 1235 FFG 1243
FFG
Sbjct: 361 FFG 363
Score = 165 bits (418), Expect(2) = 0.0
Identities = 81/104 (77%), Positives = 88/104 (84%)
Frame = +1
Query: 1219 PNWLEVFWNLMDASKLSLCGEESFGNGSDHIREKDGLWAVLAWLSILATRKQSVEGHLKD 1398
P + F NLMDASKLSLCGEESFG GSDHIREKDGLWAVLAWLSILATRKQSVE LKD
Sbjct: 356 PTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKD 415
Query: 1399 HWQKYGPEFLPQYEYXEVEAEGAHKMMKELEALISDRSLWGEQF 1530
HWQKYG F +Y+Y EVEAEGA+KMMK+LEAL+ DRS G+QF
Sbjct: 416 HWQKYGRNFFTRYDYEEVEAEGANKMMKDLEALMFDRSFVGKQF 459
>ref|NP_001166289.1| phosphoglucomutase-1 isoform 2 [Homo sapiens].
Length = 580
Score = 593 bits (1529), Expect(2) = 0.0
Identities = 296/360 (82%), Positives = 315/360 (87%)
Frame = +2
Query: 164 IVTVKTKAYQDQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPAHRQEATLVVGGDG 343
++T T Y DQKPGTSGLRK+ F+ Y ENFIQSI +++ RQ ++LVVGGDG
Sbjct: 22 LLTFATAPYHDQKPGTSGLRKKTYYFEEKPCYLENFIQSIFFSIDLKDRQGSSLVVGGDG 81
Query: 344 RFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCXXXXXXXXXXXXLTASHNPGGP 523
R++ K AI+ IV++AAANGIGRLVIGQNGILSTPAVSC LTASHNPGGP
Sbjct: 82 RYFNKSAIETIVQMAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNPGGP 141
Query: 524 NGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKP 703
NGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYA+CPDLKVDLGVLGKQQFDLENKFKP
Sbjct: 142 NGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAVCPDLKVDLGVLGKQQFDLENKFKP 201
Query: 704 FTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGA 883
FTVEIVDSVEAYATMLR+IFDF+ALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGA
Sbjct: 202 FTVEIVDSVEAYATMLRSIFDFSALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGA 261
Query: 884 PANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHXXXXXXXXXXXRNMILGKHGFF 1063
PANSAVNCVPLEDFGGHHPDPNLTYAADLVETMK+GEH RNMILGKHGFF
Sbjct: 262 PANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKSGEHDFGAAFDGDGDRNMILGKHGFF 321
Query: 1064 VNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFG 1243
VNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVA+ATKIALYETPTGWKFFG
Sbjct: 322 VNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVASATKIALYETPTGWKFFG 381
Score = 165 bits (418), Expect(2) = 0.0
Identities = 81/104 (77%), Positives = 88/104 (84%)
Frame = +1
Query: 1219 PNWLEVFWNLMDASKLSLCGEESFGNGSDHIREKDGLWAVLAWLSILATRKQSVEGHLKD 1398
P + F NLMDASKLSLCGEESFG GSDHIREKDGLWAVLAWLSILATRKQSVE LKD
Sbjct: 374 PTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKD 433
Query: 1399 HWQKYGPEFLPQYEYXEVEAEGAHKMMKELEALISDRSLWGEQF 1530
HWQKYG F +Y+Y EVEAEGA+KMMK+LEAL+ DRS G+QF
Sbjct: 434 HWQKYGRNFFTRYDYEEVEAEGANKMMKDLEALMFDRSFVGKQF 477
>ref|NP_068800.2| phosphoglucomutase-like protein 5 [Homo sapiens].
Length = 567
Score = 487 bits (1253), Expect = e-137
Identities = 232/381 (60%), Positives = 293/381 (76%), Gaps = 1/381 (0%)
Frame = +2
Query: 158 VKIVTVKTKAYQDQKP-GTSGLRKRVKVFQSSANYAENFIQSIISTVEPAHRQEATLVVG 334
+ ++TV T Y+DQ+P G GLR+ +F+ NY NFIQS++S+++ RQ T+VVG
Sbjct: 6 IPVLTVPTAPYEDQRPAGGGGLRRPTGLFEGQRNYLPNFIQSVLSSIDLRDRQGCTMVVG 65
Query: 335 GDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCXXXXXXXXXXXXLTASHNP 514
DGR++ + AI+++V++AAANGIGRL+IGQNGILSTPAVSC LTASH P
Sbjct: 66 SDGRYFSRTAIEIVVQMAAANGIGRLIIGQNGILSTPAVSCIIRKIKAAGGIILTASHCP 125
Query: 515 GGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENK 694
GGP G+FG+KFN++NGGPAP+ ++DKI+QISKTIEEYAICPDL++DL LG+Q+FDLENK
Sbjct: 126 GGPGGEFGVKFNVANGGPAPDVVSDKIYQISKTIEEYAICPDLRIDLSRLGRQEFDLENK 185
Query: 695 FKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEE 874
FKPF VEIVD V+ Y +LR IFDF+A+K LL+GP++LKIRIDAMHGV+GPYV+K+LC+E
Sbjct: 186 FKPFRVEIVDPVDIYLNLLRTIFDFHAIKGLLTGPSQLKIRIDAMHGVMGPYVRKVLCDE 245
Query: 875 LGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHXXXXXXXXXXXRNMILGKH 1054
LGAPANSA+NCVPLEDFGG HPDPNLTYA L+E MK GE+ R MILG++
Sbjct: 246 LGAPANSAINCVPLEDFGGQHPDPNLTYATTLLEAMKGGEYGFGAAFDADGDRYMILGQN 305
Query: 1055 GFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWK 1234
GFFV+PSDS+A+IAAN+ IPYF+Q GVRGF RSMPTS ALDRVA + K+ +YETP GW+
Sbjct: 306 GFFVSPSDSLAIIAANLSCIPYFRQMGVRGFGRSMPTSMALDRVAKSMKVPVYETPAGWR 365
Query: 1235 FFGI*WMQANCPFVGRRASET 1297
FF C G + T
Sbjct: 366 FFSNLMDSGRCNLCGEESFGT 386
Score = 128 bits (321), Expect = 2e-29
Identities = 56/101 (55%), Positives = 79/101 (78%)
Frame = +1
Query: 1237 FWNLMDASKLSLCGEESFGNGSDHIREKDGLWAVLAWLSILATRKQSVEGHLKDHWQKYG 1416
F NLMD+ + +LCGEESFG GSDH+REKDGLWAVL WLSI+A RKQSVE ++DHW K+G
Sbjct: 367 FSNLMDSGRCNLCGEESFGTGSDHLREKDGLWAVLVWLSIIAARKQSVEEIVRDHWAKFG 426
Query: 1417 PEFLPQYEYXEVEAEGAHKMMKELEALISDRSLWGEQFPVG 1539
+ +++Y ++ + + +M++LEAL++D+S G+QF VG
Sbjct: 427 RHYYCRFDYEGLDPKTTYYIMRDLEALVTDKSFIGQQFAVG 467
>ref|NP_001166290.1| phosphoglucomutase-1 isoform 3 [Homo sapiens].
Length = 365
Score = 308 bits (788), Expect(2) = e-126
Identities = 151/166 (90%), Positives = 155/166 (93%)
Frame = +2
Query: 746 MLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGAPANSAVNCVPLEDF 925
MLR+IFDF+ALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGAPANSAVNCVPLEDF
Sbjct: 1 MLRSIFDFSALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGAPANSAVNCVPLEDF 60
Query: 926 GGHHPDPNLTYAADLVETMKTGEHXXXXXXXXXXXRNMILGKHGFFVNPSDSVAVIAANI 1105
GGHHPDPNLTYAADLVETMK+GEH RNMILGKHGFFVNPSDSVAVIAANI
Sbjct: 61 GGHHPDPNLTYAADLVETMKSGEHDFGAAFDGDGDRNMILGKHGFFVNPSDSVAVIAANI 120
Query: 1106 FSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFG 1243
FSIPYFQQTGVRGFARSMPTSGALDRVA+ATKIALYETPTGWKFFG
Sbjct: 121 FSIPYFQQTGVRGFARSMPTSGALDRVASATKIALYETPTGWKFFG 166
Score = 165 bits (418), Expect(2) = e-126
Identities = 81/104 (77%), Positives = 88/104 (84%)
Frame = +1
Query: 1219 PNWLEVFWNLMDASKLSLCGEESFGNGSDHIREKDGLWAVLAWLSILATRKQSVEGHLKD 1398
P + F NLMDASKLSLCGEESFG GSDHIREKDGLWAVLAWLSILATRKQSVE LKD
Sbjct: 159 PTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKD 218
Query: 1399 HWQKYGPEFLPQYEYXEVEAEGAHKMMKELEALISDRSLWGEQF 1530
HWQKYG F +Y+Y EVEAEGA+KMMK+LEAL+ DRS G+QF
Sbjct: 219 HWQKYGRNFFTRYDYEEVEAEGANKMMKDLEALMFDRSFVGKQF 262
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 59,871,172
Number of extensions: 1660914
Number of successful extensions: 5077
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5067
Number of HSP's successfully gapped: 8
Length of query: 513
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 406
Effective length of database: 14,770,016
Effective search space: 5996626496
Effective search space used: 5996626496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012560
(1541 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 791 0.0
Sscrofa_Chr16 321 6e-85
Sscrofa_Chr01 78 2e-11
>Sscrofa_Chr06
|| Length = 157765593
Score = 791 bits (399), Expect = 0.0
Identities = 399/399 (100%)
Strand = Plus / Minus
Query: 2 ctgtccctttaaggaggagggacgagcaaggccgagggagctgccgctgccccgacccgg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137233553 ctgtccctttaaggaggagggacgagcaaggccgagggagctgccgctgccccgacccgg 137233494
Query: 62 tccgcgccctcaccccagagcagccgcagccacagtcccggccgtcccccggttggcaga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137233493 tccgcgccctcaccccagagcagccgcagccacagtcccggccgtcccccggttggcaga 137233434
Query: 122 gtccgctccggccccagaaagcaaaccgccaccatggtgaagatcgtgaccgttaagacc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137233433 gtccgctccggccccagaaagcaaaccgccaccatggtgaagatcgtgaccgttaagacc 137233374
Query: 182 aaggcgtatcaagaccagaagccgggcacgagcgggctgcggaagcgggtgaaggtgttt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137233373 aaggcgtatcaagaccagaagccgggcacgagcgggctgcggaagcgggtgaaggtgttt 137233314
Query: 242 cagagcagcgccaactacgcggagaatttcatccagagtatcatctccaccgtggagccg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137233313 cagagcagcgccaactacgcggagaatttcatccagagtatcatctccaccgtggagccg 137233254
Query: 302 gcgcatcggcaggaggccaccctggtggtgggcggggacggcaggttttacatgaaggag 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137233253 gcgcatcggcaggaggccaccctggtggtgggcggggacggcaggttttacatgaaggag 137233194
Query: 362 gccatccagctcatcgtccgcatcgccgccgccaacggg 400
|||||||||||||||||||||||||||||||||||||||
Sbjct: 137233193 gccatccagctcatcgtccgcatcgccgccgccaacggg 137233155
Score = 385 bits (194), Expect = e-104
Identities = 194/194 (100%)
Strand = Plus / Minus
Query: 835 agtcgtggggccgtacgtgaagaagatcctgtgtgaggagctgggagcccccgcaaactc 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137195231 agtcgtggggccgtacgtgaagaagatcctgtgtgaggagctgggagcccccgcaaactc 137195172
Query: 895 ggcggtgaactgcgttcctctggaggactttgggggccaccaccctgaccccaacctcac 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137195171 ggcggtgaactgcgttcctctggaggactttgggggccaccaccctgaccccaacctcac 137195112
Query: 955 ctatgctgccgacctggtggagacgatgaagacaggagagcatgattttggggctgcctt 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137195111 ctatgctgccgacctggtggagacgatgaagacaggagagcatgattttggggctgcctt 137195052
Query: 1015 tgatggagatgggg 1028
||||||||||||||
Sbjct: 137195051 tgatggagatgggg 137195038
Score = 329 bits (166), Expect = 3e-87
Identities = 166/166 (100%)
Strand = Plus / Minus
Query: 400 gattggtcgcttggttattggacagaatggaatcctctccacccctgctgtatcctgcat 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137200575 gattggtcgcttggttattggacagaatggaatcctctccacccctgctgtatcctgcat 137200516
Query: 460 cattagaaagatcaaagccattggtgggatcatcctgacagccagccacaacccaggagg 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137200515 cattagaaagatcaaagccattggtgggatcatcctgacagccagccacaacccaggagg 137200456
Query: 520 acccaatggagattttggaatcaaattcaatatttccaacggaggt 565
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137200455 acccaatggagattttggaatcaaattcaatatttccaacggaggt 137200410
Score = 311 bits (157), Expect = 6e-82
Identities = 157/157 (100%)
Strand = Plus / Minus
Query: 1027 ggatcgaaacatgattctgggcaagcatgggttctttgtgaacccttcagactccgtggc 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137193526 ggatcgaaacatgattctgggcaagcatgggttctttgtgaacccttcagactccgtggc 137193467
Query: 1087 tgtcatcgctgccaacatcttcagcattccgtatttccagcaaactggggtccgcggctt 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137193466 tgtcatcgctgccaacatcttcagcattccgtatttccagcaaactggggtccgcggctt 137193407
Query: 1147 tgcacgcagcatgcccaccagtggtgccctggaccgg 1183
|||||||||||||||||||||||||||||||||||||
Sbjct: 137193406 tgcacgcagcatgcccaccagtggtgccctggaccgg 137193370
Score = 295 bits (149), Expect = 4e-77
Identities = 149/149 (100%)
Strand = Plus / Minus
Query: 562 aggtcctgccccggaagcaataacggataagattttccaaatcagcaagacaattgaaga 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137200097 aggtcctgccccggaagcaataacggataagattttccaaatcagcaagacaattgaaga 137200038
Query: 622 atacgcgatttgccctgacctgaaagtagaccttggggttctgggaaagcagcagtttga 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137200037 atacgcgatttgccctgacctgaaagtagaccttggggttctgggaaagcagcagtttga 137199978
Query: 682 cctggaaaacaagttcaaacccttcacag 710
|||||||||||||||||||||||||||||
Sbjct: 137199977 cctggaaaacaagttcaaacccttcacag 137199949
Score = 262 bits (132), Expect = 5e-67
Identities = 132/132 (100%)
Strand = Plus / Minus
Query: 705 tcacagtggaaattgtggactcggtggaagcctatgctaccatgctgagaaacatctttg 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137198264 tcacagtggaaattgtggactcggtggaagcctatgctaccatgctgagaaacatctttg 137198205
Query: 765 acttcaatgcactgaaagaactgctttctggtccaaaccgactgaagatccgtatagacg 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137198204 acttcaatgcactgaaagaactgctttctggtccaaaccgactgaagatccgtatagacg 137198145
Query: 825 ccatgcacggag 836
||||||||||||
Sbjct: 137198144 ccatgcacggag 137198133
Score = 210 bits (106), Expect = 2e-51
Identities = 113/114 (99%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 1182 gggtggctaatgctacaaagattgctttgtacgagaccccaactggttggaagtttttt- 1240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137190516 gggtggctaatgctacaaagattgctttgtacgagaccccaactggttggaagttttttg 137190457
Query: 1241 ggaatctgatggatgcaagcaaactgtccctttgtggggaggagagcttcggaa 1294
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137190456 ggaatctgatggatgcaagcaaactgtccctttgtggggaggagagcttcggaa 137190403
Score = 204 bits (103), Expect = 1e-49
Identities = 133/139 (95%), Gaps = 3/139 (2%)
Strand = Plus / Minus
Query: 1297 ggttctgaccacatccgtgagaaggacggactctgggctgtccttgcctggctctccatc 1356
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 137181305 ggttctgaccacatccgtgagaaggacggactctgggctgtccttgcttggctctccatc 137181246
Query: 1357 ctcgctacccgcaagcagagtgtggagggaca-tctcaaagatcactggcaaaagtatgg 1415
||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 137181245 ctcgccacccgcaagcagagtgtgga-ggacattctcaaagatcactggcaaaagtatgg 137181187
Query: 1416 cccggaatttcttccccag 1434
||||||||||||| ||||
Sbjct: 137181186 -ccggaatttcttcaccag 137181169
Score = 153 bits (77), Expect = 3e-34
Identities = 100/108 (92%)
Strand = Plus / Minus
Query: 1434 gtacgaatacnaagaggtggaagctgagggtgcccacaaaatgatgaaagaattggaggc 1493
|||||| ||| ||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 137177764 gtacgattacgaagaggtggaagctgagggtgccaacaaaatgatgaaggaattggaggc 137177705
Query: 1494 tctgatctctgaccgctccctctggggggaacagttcccagtgggtga 1541
||||||||||||||||||| || |||| |||||||||||||||||||
Sbjct: 137177704 tctgatctctgaccgctccttcgtggggaaacagttcccagtgggtga 137177657
>Sscrofa_Chr16
|| Length = 86898991
Score = 321 bits (162), Expect = 6e-85
Identities = 316/366 (86%), Gaps = 1/366 (0%)
Strand = Plus / Minus
Query: 1037 atgattctgggcaagcatgggttctttgtgaacccttcagactccgtggctgtcatcgct 1096
||||||||||||| || ||||||| || ||||||||||||||||| |||||||||| |||
Sbjct: 18919411 atgattctgggcatgcctgggttccttatgaacccttcagactccatggctgtcattgct 18919352
Query: 1097 gccaacatcttcagcattccgtatttccagcaaactggggtccgcggctttgcacgcagc 1156
|||||||||||||||||||| |||| |||||||| || ||||| |||||||||| |||
Sbjct: 18919351 gccaacatcttcagcattccatattaccagcaaaatgaggtccatggctttgcacacagt 18919292
Query: 1157 atgcccaccagtggtgccctggaccgggtggctaatgctacaaagattgctttgtacgag 1216
| | ||||||||||| ||||||| |||||||||||| ||||||| ||||| |||
Sbjct: 18919291 gttctcaccagtggtgtgctggaccaggtggctaatgccacaaagaccattttgtgtgag 18919232
Query: 1217 accccaactggttggaagtttttt-ggaatctgatggatgcaagcaaactgtccctttgt 1275
||||||||||| | |||||||||| |||||||||||||||||||||||| |||||| |||
Sbjct: 18919231 accccaactggctagaagtttttttggaatctgatggatgcaagcaaacggtccctctgt 18919172
Query: 1276 ggggaggagagcttcggaaacggttctgaccacatccgtgagaaggacggactctgggct 1335
||||||||||||||| ||| | |||||||||||| | ||||||| ||||||| |||||||
Sbjct: 18919171 ggggaggagagcttcagaaccagttctgaccacagctgtgagaatgacggaccctgggct 18919112
Query: 1336 gtccttgcctggctctccatcctcgctacccgcaagcagagtgtggagggacatctcaaa 1395
|||||||| ||| |||||||||| || ||| |||| ||||| ||||||| |||||||
Sbjct: 18919111 gtccttgcttggttctccatcctagccacctgcaaacagagcgtggaggatattctcaaa 18919052
Query: 1396 gatcac 1401
||||||
Sbjct: 18919051 gatcac 18919046
>Sscrofa_Chr01
|| Length = 315321322
Score = 77.8 bits (39), Expect = 2e-11
Identities = 102/123 (82%)
Strand = Plus / Plus
Query: 400 gattggtcgcttggttattggacagaatggaatcctctccacccctgctgtatcctgcat 459
||||||||| || |||||||||||||||| ||| | || || |||||||| ||||||||
Sbjct: 247961313 gattggtcgactgattattggacagaatggcatcttgtcgacacctgctgtttcctgcat 247961372
Query: 460 cattagaaagatcaaagccattggtgggatcatcctgacagccagccacaacccaggagg 519
|| ||||||||||| || |||||| |||||| | |||||||||||| ||| |||||
Sbjct: 247961373 tatcagaaagatcaaggcagctggtggaatcatcttaacagccagccactgccctggagg 247961432
Query: 520 acc 522
|||
Sbjct: 247961433 acc 247961435
Score = 71.9 bits (36), Expect = 1e-09
Identities = 84/100 (84%)
Strand = Plus / Plus
Query: 861 tcctgtgtgaggagctgggagcccccgcaaactcggcggtgaactgcgttcctctggagg 920
|||||||||| |||||||||||||| || || || || | ||||| ||||| ||||| |
Sbjct: 247980585 tcctgtgtgatgagctgggagccccagccaattctgcaatcaactgtgttcccctggaag 247980644
Query: 921 actttgggggccaccaccctgaccccaacctcacctatgc 960
| ||||||||||| || |||||||||||||| || |||||
Sbjct: 247980645 attttgggggccagcatcctgaccccaacctgacatatgc 247980684
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,115,498
Number of extensions: 196
Number of successful extensions: 196
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 12
Length of query: 1541
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1520
Effective length of database: 2,808,413,156
Effective search space: 4268787997120
Effective search space used: 4268787997120
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)