Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012614
(1001 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_855206.1| PREDICTED: similar to serine (or cysteine) prot... 481 e-136
Alignment gi|XP_537544.2| PREDICTED: similar to serine (or cysteine) prot... 238 9e-63
Alignment gi|XP_538128.1| PREDICTED: similar to Thyroxine-binding globuli... 234 7e-62
Alignment gi|XP_537546.2| PREDICTED: similar to Alpha-1-antichymotrypsin ... 234 1e-61
Alignment gi|XP_547962.2| PREDICTED: similar to serine (or cysteine) prot... 228 9e-60
Alignment gi|NP_001073578.1| serpin peptidase inhibitor, clade A (alpha-1... 221 8e-58
Alignment gi|XP_547960.2| PREDICTED: similar to Corticosteroid-binding gl... 207 2e-53
Alignment gi|XP_855210.1| PREDICTED: similar to serine (or cysteine) prot... 202 3e-52
Alignment gi|XP_537545.1| PREDICTED: similar to serine (or cysteine) prot... 194 1e-49
Alignment gi|XP_855208.1| PREDICTED: similar to Corticosteroid-binding gl... 144 2e-34
>ref|XP_855206.1| PREDICTED: similar to serine (or cysteine) proteinase inhibitor,
clade A (alpha-1 antiproteinase, antitrypsin), member 11
[Canis familiaris].
Length = 422
Score = 481 bits (1239), Expect = e-136
Identities = 240/287 (83%), Positives = 254/287 (88%)
Frame = +3
Query: 141 MGPARLWLLGAGILASVHCQPFPAHGSKSLGGPEAPGRQLSGARPAYHKITPTLTDFALR 320
MGP LWLLGAGIL SVHCQPF AHG KSLG P AP LS PAYHKITPT+T+FAL
Sbjct: 1 MGPVWLWLLGAGILPSVHCQPFSAHGDKSLGVPHAPRDHLSSPDPAYHKITPTITNFALH 60
Query: 321 LYKQLAAETPGNIFFSPVSISSTLALLSLGAQADTPTQILEGLGFNLTEIPEADIHRGFQ 500
LYKQLAAET GNIFFSPVSIS++LALLSLGAQ +T TQILEGLGFNLTE PEADIHRGFQ
Sbjct: 61 LYKQLAAETSGNIFFSPVSISTSLALLSLGAQVNTSTQILEGLGFNLTETPEADIHRGFQ 120
Query: 501 SLIRTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGALAFSANFTDSGTTRRQI 680
SLI TL LPSSKLE+KVGNSLFLDKQLKPQQHFLD IRE+YGA AFSANFTDS TTRRQI
Sbjct: 121 SLIHTLDLPSSKLELKVGNSLFLDKQLKPQQHFLDTIRELYGAFAFSANFTDSATTRRQI 180
Query: 681 NDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNPYQTQKQESFFVDERTSL 860
N+Y+RKQTYGQV D L+EF QDTLMVLLNYIFFKAKWKHPF+ YQTQKQESF V+ERTSL
Sbjct: 181 NEYVRKQTYGQVADGLQEFTQDTLMVLLNYIFFKAKWKHPFSRYQTQKQESFSVNERTSL 240
Query: 861 RVPMMRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGKMAQV 1001
+PMM QKEMHRFLYD E+ACTVLQIEYSGNA ALLILPDPGKM QV
Sbjct: 241 HIPMMHQKEMHRFLYDQEMACTVLQIEYSGNAMALLILPDPGKMEQV 287
>ref|XP_537544.2| PREDICTED: similar to serine (or cysteine) proteinase inhibitor,
clade A (alpha-1 antiproteinase, antitrypsin), member 9
[Canis familiaris].
Length = 418
Score = 238 bits (606), Expect = 9e-63
Identities = 124/284 (43%), Positives = 189/284 (66%), Gaps = 1/284 (0%)
Frame = +3
Query: 153 RLWLLGAGILASVHCQPFPAHGSKSLGGPEAPGRQLSGARPAYHKITPTLTDFALRLYKQ 332
RL+L+ I A ++C P P SK G P + + A +++ + TDFA RLY++
Sbjct: 7 RLFLI-VSISAPIYCVPPPRAPSK--GSPCMSSTRSTAAS----QLSSSNTDFAFRLYQR 59
Query: 333 LAAETPG-NIFFSPVSISSTLALLSLGAQADTPTQILEGLGFNLTEIPEADIHRGFQSLI 509
L +TP N+FFSP+S+S+ LA+LSLGA++ T TQIL+GLGFNLT +PE+ IH+ FQ L+
Sbjct: 60 LILKTPDQNVFFSPLSVSACLAMLSLGARSATKTQILQGLGFNLTHLPESSIHQAFQHLL 119
Query: 510 RTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGALAFSANFTDSGTTRRQINDY 689
+L +P L++++G+ LF+ K+L Q +FLD+++ +Y + FS +F+ S T R +IN Y
Sbjct: 120 HSLRVPGKDLDLRMGSVLFIKKELWLQTNFLDDVKRLYESKVFSTDFSSSSTAREKINSY 179
Query: 690 LRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNPYQTQKQESFFVDERTSLRVP 869
+ K+T G+VV+ ++ T+MVL+N+IFFK KW+ PFNP T K F V +RT+++VP
Sbjct: 180 VEKETKGKVVNLIQSLEPLTVMVLVNHIFFKGKWEKPFNPGYTSKSSPFLVGKRTTVKVP 239
Query: 870 MMRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGKMAQV 1001
MM Q E F D E+ C+VL+++Y + A +LP GKM Q+
Sbjct: 240 MMHQVEEFAFGVDAELKCSVLRMDYDEDTAAFFVLPGQGKMRQL 283
>ref|XP_538128.1| PREDICTED: similar to Thyroxine-binding globulin precursor
(T4-binding globulin) [Canis familiaris].
Length = 414
Score = 234 bits (598), Expect = 7e-62
Identities = 116/242 (47%), Positives = 170/242 (70%), Gaps = 1/242 (0%)
Frame = +3
Query: 279 YHKITPTLTDFALRLYKQLAAETPG-NIFFSPVSISSTLALLSLGAQADTPTQILEGLGF 455
++K++ DFA LY++ ETP NIFFSPVSIS+ LA+LS GA T QILE LGF
Sbjct: 38 FYKMSSINADFAFNLYRRFTVETPDRNIFFSPVSISAALAMLSFGACYSTQIQILESLGF 97
Query: 456 NLTEIPEADIHRGFQSLIRTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGALA 635
NLT+ P A+I +GFQ LI +L +P +LE+++GN+LF+ KQLKP FLD+++ +Y
Sbjct: 98 NLTDTPMAEIQQGFQHLICSLNIPKKELELQMGNTLFIGKQLKPLAQFLDDVKSLYATEV 157
Query: 636 FSANFTDSGTTRRQINDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNPYQ 815
FS +F++ ++ IN ++ KQT G+VV +++ +T+MVL+NYI FKA+W +PF+P +
Sbjct: 158 FSTDFSNVSAAQQLINSHVEKQTKGEVVGLIQDLKPNTIMVLVNYIHFKAQWANPFDPSK 217
Query: 816 TQKQESFFVDERTSLRVPMMRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGKMA 995
T++ SF VD+ T+++VPMM Q E + L D E+ CTVLQ++YS NA AL +LP G++
Sbjct: 218 TEEGFSFSVDKTTTVKVPMMHQMEQYYHLVDTELNCTVLQMDYSKNALALFVLPKEGQIE 277
Query: 996 QV 1001
V
Sbjct: 278 WV 279
>ref|XP_537546.2| PREDICTED: similar to Alpha-1-antichymotrypsin precursor (ACT) [Canis
familiaris].
Length = 421
Score = 234 bits (597), Expect = 1e-61
Identities = 124/284 (43%), Positives = 187/284 (65%), Gaps = 2/284 (0%)
Frame = +3
Query: 156 LWLLGAGILASVHCQPFPAHGSKSLGGPEAPGRQLSGARPAYHKITPTLTDFALRLYKQL 335
L LL AG+ +VHC P +++ + P + ++ + TDF L LYK+L
Sbjct: 7 LGLLVAGLCPTVHCLPEGMRDPENVTQEDLPNETSENSL----RLASSNTDFTLSLYKEL 62
Query: 336 AAETPG-NIFFSPVSISSTLALLSLGAQADTPTQILEGLGFNLTEIPEADIHRGFQSLIR 512
A+++P N+ FSP+SIS LA LSLGAQ T T+ILEGL FNLTEIP+ +IHRGFQ L+R
Sbjct: 63 ASKSPDKNVIFSPMSISIALAFLSLGAQGTTQTEILEGLKFNLTEIPDREIHRGFQHLLR 122
Query: 513 TLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGALAFSANFTDSGTTRRQINDYL 692
L PSS+L++ VGN++F+ +QLK + F+++ R +Y + AFS NF +S + INDY+
Sbjct: 123 ALHQPSSELQLSVGNAMFVGEQLKLLETFVEDARALYASEAFSTNFQNSAAAEKLINDYV 182
Query: 693 RKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNPYQTQKQESFFVDERTSLRVPM 872
+ +T G++VD +++ T +VL+NYIF KAKWK PF+P T K + F V + S++VPM
Sbjct: 183 KNRTQGKIVDLVKDLDLHTAVVLVNYIFLKAKWKTPFDPRDTFKSK-FQVSKSRSVKVPM 241
Query: 873 MRQKEMH-RFLYDHEVACTVLQIEYSGNAQALLILPDPGKMAQV 1001
M +++ + D ++CTV++++Y+ N AL +LPD G+M V
Sbjct: 242 MNLEDVWVPYFRDDALSCTVVELQYTSNDSALFVLPDEGRMEAV 285
>ref|XP_547962.2| PREDICTED: similar to serine (or cysteine) proteinase inhibitor,
clade A (alpha-1 antiproteinase, antitrypsin), member 4
[Canis familiaris].
Length = 417
Score = 228 bits (580), Expect = 9e-60
Identities = 131/284 (46%), Positives = 178/284 (62%), Gaps = 2/284 (0%)
Frame = +3
Query: 156 LWLLGAGILASVHCQPFPAHGSKSLGGPEAPGRQLSGARPAYHKITPTLTDFALRLYKQL 335
L LL AG+L H Q P S P +G KI P T FAL Y +
Sbjct: 7 LLLLLAGLLFLPHGQLHPERYSLHQEPPS------TGEGSPSLKIAPGNTAFALHFYHLM 60
Query: 336 AAETPG-NIFFSPVSISSTLALLSLGAQADTPTQILEGLGFNLTEIPEADIHRGFQSLIR 512
A+++PG NIFFSP+SIS++ A+LSLGA++ + TQILEGLGFNLTE+ E+DIHRGFQ L+
Sbjct: 61 ASQSPGSNIFFSPLSISASYAMLSLGARSHSKTQILEGLGFNLTEVSESDIHRGFQHLLH 120
Query: 513 TLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGALAFSANFTDSGTTRRQINDYL 692
TL LP +LEM +G++LFL + L FL++ Y + F NF D T + IND++
Sbjct: 121 TLHLPDDRLEMHMGSTLFLSQDLLILPEFLNDSVAFYDSKLFLTNFHDPVGTTQLINDHI 180
Query: 693 RKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNPYQTQKQESFFVDERTSLRVPM 872
+++T G++VD + + D MVL+NYI+FKA W+ PF P T Q+ F VDE T ++VPM
Sbjct: 181 KEETQGKIVDLVSKLNTDIAMVLVNYIYFKALWEKPFQPSMTTTQD-FHVDENTVVQVPM 239
Query: 873 MRQKEMHR-FLYDHEVACTVLQIEYSGNAQALLILPDPGKMAQV 1001
M Q H +L D + C+VL+++Y GN A ILP+ GKM QV
Sbjct: 240 MLQDTAHHWYLNDRYLPCSVLRMDYKGNMTAFFILPNRGKMKQV 283
>ref|NP_001073578.1| serpin peptidase inhibitor, clade A (alpha-1 antiproteinase,
antitrypsin), member 1 [Canis lupus familiaris].
Length = 415
Score = 221 bits (563), Expect = 8e-58
Identities = 111/242 (45%), Positives = 162/242 (66%), Gaps = 1/242 (0%)
Frame = +3
Query: 270 RPAYHKITPTLTDFALRLYKQLAAET-PGNIFFSPVSISSTLALLSLGAQADTPTQILEG 446
+PA HKI P L DFA LY+Q+A E+ NIFFSPVSI++ A+LSLG + DT TQI++G
Sbjct: 41 QPACHKIAPNLADFAFSLYRQVAQESNTTNIFFSPVSIATAFAMLSLGTKGDTHTQIMQG 100
Query: 447 LGFNLTEIPEADIHRGFQSLIRTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYG 626
LGFNLTE E ++H+GF L+ L P ++L++ G+ LF++ +K FL+++R +Y
Sbjct: 101 LGFNLTERAEREVHQGFHQLLSILNQPDNQLQLTTGSGLFINDTIKLLNKFLEDVRNLYH 160
Query: 627 ALAFSANFTDSGTTRRQINDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFN 806
+ AF+ NF + ++QIN+Y+ K T G++VD +++ +DT+ L+NYIFFK KW+ PF
Sbjct: 161 SEAFTINFRHTEEAKKQINNYVEKGTQGKIVDLVKDLDEDTVFALVNYIFFKGKWEKPFE 220
Query: 807 PYQTQKQESFFVDERTSLRVPMMRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPG 986
T +E F VDE T+++VPMM + M + ++ VL +EY GNA A ILPD G
Sbjct: 221 VEHT-TEEDFHVDEHTTVKVPMMSRLGMFDIQHCATLSSWVLLMEYVGNATAFFILPDEG 279
Query: 987 KM 992
KM
Sbjct: 280 KM 281
>ref|XP_547960.2| PREDICTED: similar to Corticosteroid-binding globulin precursor (CBG)
(Transcortin) [Canis familiaris].
Length = 404
Score = 207 bits (526), Expect = 2e-53
Identities = 105/243 (43%), Positives = 154/243 (63%), Gaps = 1/243 (0%)
Frame = +3
Query: 276 AYHKITPTLTDFALRLYKQLAAETPG-NIFFSPVSISSTLALLSLGAQADTPTQILEGLG 452
++ + P DFA LY+ L A +P N+F SPVSIS LA+LSLGA T Q+L+GLG
Sbjct: 34 SHRDLAPKNVDFAFNLYRHLVASSPDKNVFISPVSISMALAMLSLGACGYTRVQLLQGLG 93
Query: 453 FNLTEIPEADIHRGFQSLIRTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGAL 632
FNLT++ EA+IH+GF+ L L + LEM +GN+LFLD+ L+ + F + + Y
Sbjct: 94 FNLTKMSEAEIHQGFRHLRHLLEKSDTMLEMTMGNALFLDRSLELLEPFSADTKHYYDLE 153
Query: 633 AFSANFTDSGTTRRQINDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNPY 812
A++ +F D RQIN+Y++ +T G++VD L + +++L+NYIFFK W+HPF+P
Sbjct: 154 AWATDFQDGTGASRQINEYIKNKTQGKIVDLLSKLDSSAMVILVNYIFFKGTWEHPFDPE 213
Query: 813 QTQKQESFFVDERTSLRVPMMRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGKM 992
T ++E F+V+E T +RVP M Q + L D + C ++Q+EY GN ILP+ GKM
Sbjct: 214 ST-REEDFYVNETTVVRVPTMFQSSTIKHLNDQVLPCQLVQLEYMGNGTVFFILPEEGKM 272
Query: 993 AQV 1001
V
Sbjct: 273 DTV 275
>ref|XP_855210.1| PREDICTED: similar to serine (or cysteine) proteinase inhibitor,
clade A (alpha-1 antiproteinase, antitrypsin), member 12
[Canis familiaris].
Length = 414
Score = 202 bits (515), Expect = 3e-52
Identities = 107/257 (41%), Positives = 164/257 (63%), Gaps = 1/257 (0%)
Frame = +3
Query: 234 GPEAPGRQLSGARPAYHKITPTLTDFALRLYKQLAAETPG-NIFFSPVSISSTLALLSLG 410
GP++ + G + A I TDF +LY++LA+ +P NIFFSP+SIS+ ++LSLG
Sbjct: 31 GPKSQIQSWKGMKAAEGLIKRN-TDFGCKLYRKLASNSPRKNIFFSPLSISAAFSMLSLG 89
Query: 411 AQADTPTQILEGLGFNLTEIPEADIHRGFQSLIRTLGLPSSKLEMKVGNSLFLDKQLKPQ 590
AQ T +I +G FN +PE DIH GF LI + S LE+ + N+LF+D++L+P+
Sbjct: 90 AQDSTLDEIKQG--FNFRNMPERDIHEGFHYLIYRMNQGSQDLELHLRNTLFIDQKLQPE 147
Query: 591 QHFLDNIREVYGALAFSANFTDSGTTRRQINDYLRKQTYGQVVDCLEEFAQDTLMVLLNY 770
+ FL N++ +Y A NF + G TR+QINDY+ ++T G++ + ++ T+M+L N
Sbjct: 148 KKFLTNVKNLYSADTVPTNFQNLGDTRKQINDYVSQKTQGKINNLIKNIDPGTVMLLTNC 207
Query: 771 IFFKAKWKHPFNPYQTQKQESFFVDERTSLRVPMMRQKEMHRFLYDHEVACTVLQIEYSG 950
IFF+A+W+H F+P T K+E FF+D ++VPMM + M+ YD +++CT+L++ Y G
Sbjct: 208 IFFRARWQHEFDPKIT-KEEDFFLDGNQRVKVPMMFRGGMYETGYDEQLSCTILEMPYQG 266
Query: 951 NAQALLILPDPGKMAQV 1001
A ILPD GKM V
Sbjct: 267 TISATFILPDEGKMKTV 283
>ref|XP_537545.1| PREDICTED: similar to serine (or cysteine) proteinase inhibitor,
clade A (alpha-1 antiproteinase, antitrypsin), member 5
[Canis familiaris].
Length = 407
Score = 194 bits (493), Expect = 1e-49
Identities = 102/244 (41%), Positives = 148/244 (60%), Gaps = 1/244 (0%)
Frame = +3
Query: 273 PAYHKITPTLTDFALRLYKQLAAETPG-NIFFSPVSISSTLALLSLGAQADTPTQILEGL 449
P + P DFA LY+ LA P NIFFSP+SIS+TLA+LSLGA + T QILEGL
Sbjct: 35 PVASTVAPASRDFAFDLYRALATAAPDQNIFFSPLSISTTLAMLSLGAGSSTKVQILEGL 94
Query: 450 GFNLTEIPEADIHRGFQSLIRTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGA 629
G + E E +HR L+ P +++ +GN+LF+ ++ Q FL ++ +Y A
Sbjct: 95 GLHPQEGLEEALHRRIHQLLWDFAQPREDIQLSLGNALFISPTVRLQDTFLQAVKMLYLA 154
Query: 630 LAFSANFTDSGTTRRQINDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNP 809
F NF D ++QINDY+ KQT G++VD ++ MV++NYIFFKAKW+ FN
Sbjct: 155 DTFPTNFGDPAGAQKQINDYVAKQTKGKIVDLAKDLDSTEAMVMVNYIFFKAKWETGFNH 214
Query: 810 YQTQKQESFFVDERTSLRVPMMRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGK 989
T+KQ+ F V ++VPMM+Q++ + + D ++C V+ + Y GNA AL +LP G+
Sbjct: 215 KSTRKQD-FHVTSEMVVQVPMMKQEDHYYYYVDRNLSCRVVGVPYRGNATALFVLPGEGQ 273
Query: 990 MAQV 1001
M Q+
Sbjct: 274 MGQL 277
>ref|XP_855208.1| PREDICTED: similar to Corticosteroid-binding globulin precursor
(CBG) (Transcortin) [Canis familiaris].
Length = 471
Score = 144 bits (362), Expect = 2e-34
Identities = 84/240 (35%), Positives = 136/240 (56%), Gaps = 1/240 (0%)
Frame = +3
Query: 273 PAYHKITPTLTDFALRLYKQLAAETPG-NIFFSPVSISSTLALLSLGAQADTPTQILEGL 449
P +HKI FA +L+K L E P NI FSP+SIS++ A+LSLG ++ T T +LEGL
Sbjct: 93 PVHHKIEAGNKAFAHKLFKTLLMEHPRKNIIFSPLSISASFAMLSLGTRSTTLTNLLEGL 152
Query: 450 GFNLTEIPEADIHRGFQSLIRTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGA 629
GF+L I D+H GFQS+I+ L + + + LF+D K FL + + +Y
Sbjct: 153 GFDLKVIKVWDVHHGFQSVIQMLKQLNRAGHLMHRDMLFIDSNRKINSPFLWDTQAMYDV 212
Query: 630 LAFSANFTDSGTTRRQINDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNP 809
A +F D T++QIN ++ ++T+ + + + T + L++Y+FFK W+ F+
Sbjct: 213 RARMIDFRDVVKTKKQINHFVAEKTHKRTKELITSLNPHTFLFLVDYVFFKGTWEMAFHS 272
Query: 810 YQTQKQESFFVDERTSLRVPMMRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGK 989
K E FFVD+ T++ V M+ + + E+ T+++I + GN +L+LPD G+
Sbjct: 273 NLMHK-EDFFVDKHTTVPVDMIWKTGQMIYSRSEELFATMVKIPFVGNMSIVLVLPDVGQ 331
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,095,031
Number of extensions: 1347268
Number of successful extensions: 6034
Number of sequences better than 1.0e-05: 45
Number of HSP's gapped: 5921
Number of HSP's successfully gapped: 47
Length of query: 333
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 230
Effective length of database: 15,440,896
Effective search space: 3551406080
Effective search space used: 3551406080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-012614
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012614
(1001 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092553.1| serpin A11 [Bos taurus]. 488 e-138
Alignment gi|NP_777093.1| thyroxine-binding globulin precursor [Bos tauru... 235 4e-62
Alignment gi|NP_001075181.1| SERPINA3-8 [Bos taurus]. 223 2e-58
Alignment gi|NP_001139774.1| serpin A3-6 [Bos taurus]. 218 7e-57
Alignment gi|NP_776307.1| alpha-1-antiproteinase precursor [Bos taurus]. 217 1e-56
Alignment gi|XP_002696874.1| PREDICTED: endopin 2C-like [Bos taurus]. 216 3e-56
Alignment gi|XP_001787316.2| PREDICTED: endopin 2C-like [Bos taurus]. 216 3e-56
Alignment gi|XP_001252670.1| PREDICTED: endopin 1b-like isoform 1 [Bos ta... 214 1e-55
Alignment gi|XP_001252712.1| PREDICTED: endopin 1b-like isoform 3 [Bos ta... 214 1e-55
Alignment gi|XP_001252647.3| PREDICTED: endopin 2B-like [Bos taurus]. 214 1e-55
>ref|NP_001092553.1| serpin A11 [Bos taurus].
Length = 422
Score = 488 bits (1255), Expect = e-138
Identities = 243/287 (84%), Positives = 256/287 (89%)
Frame = +3
Query: 141 MGPARLWLLGAGILASVHCQPFPAHGSKSLGGPEAPGRQLSGARPAYHKITPTLTDFALR 320
MGPA LWLLGAGILASVHCQP PAHG KSL PEAP QLS + PAY KITPTLT FALR
Sbjct: 1 MGPAWLWLLGAGILASVHCQPLPAHGDKSLRVPEAPRGQLSESLPAYQKITPTLTSFALR 60
Query: 321 LYKQLAAETPGNIFFSPVSISSTLALLSLGAQADTPTQILEGLGFNLTEIPEADIHRGFQ 500
LYKQLAAETPGNIFFSPVS+SSTLALLSLG QA+T TQILEGLGFNLTE PEADIHRGFQ
Sbjct: 61 LYKQLAAETPGNIFFSPVSLSSTLALLSLGVQANTRTQILEGLGFNLTETPEADIHRGFQ 120
Query: 501 SLIRTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGALAFSANFTDSGTTRRQI 680
SLI TL LPS KLE+K+GNSLFLD QLKPQQH LDNIRE+YG AFSANFT+S TR+QI
Sbjct: 121 SLIHTLDLPSPKLELKLGNSLFLDTQLKPQQHILDNIRELYGVFAFSANFTNSDATRKQI 180
Query: 681 NDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNPYQTQKQESFFVDERTSL 860
N Y+ +QTYGQVVDCLEEF DTLMVLLNY+FFKAKWKHPFN YQTQKQESFFVD RTSL
Sbjct: 181 NGYVSRQTYGQVVDCLEEFTPDTLMVLLNYMFFKAKWKHPFNRYQTQKQESFFVDGRTSL 240
Query: 861 RVPMMRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGKMAQV 1001
R+PMM QKEMHRFLYD EVACTVLQ+EYSGNAQALLILPDPGKMAQV
Sbjct: 241 RIPMMHQKEMHRFLYDQEVACTVLQLEYSGNAQALLILPDPGKMAQV 287
>ref|NP_777093.1| thyroxine-binding globulin precursor [Bos taurus].
Length = 411
Score = 235 bits (600), Expect = 4e-62
Identities = 115/241 (47%), Positives = 171/241 (70%), Gaps = 1/241 (0%)
Frame = +3
Query: 282 HKITPTLTDFALRLYKQLAAETPG-NIFFSPVSISSTLALLSLGAQADTPTQILEGLGFN 458
+K++ DFA LY++ E P NIFFSPVSI + LA+LSLGA + T TQILEGLGFN
Sbjct: 38 YKMSSINADFAFNLYRRFTVEIPDQNIFFSPVSIPAGLAMLSLGACSSTQTQILEGLGFN 97
Query: 459 LTEIPEADIHRGFQSLIRTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGALAF 638
LT+ P A+I +GFQ LI +L P +LE+++GN+LF+ KQLKP + FLD+++ +Y F
Sbjct: 98 LTDTPVAEIQQGFQHLICSLNFPKKELELQMGNALFIGKQLKPLEKFLDDVKNLYETEVF 157
Query: 639 SANFTDSGTTRRQINDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNPYQT 818
S +F++ +++IN ++ KQT G++V +++ +T+ VL+NY+ FKA+W +PF+P +T
Sbjct: 158 STDFSNVSAAQQEINSHVEKQTKGKIVGLIQDLKPNTITVLVNYLCFKAQWANPFDPSKT 217
Query: 819 QKQESFFVDERTSLRVPMMRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGKMAQ 998
++ SF VD+ T+++VPMM Q E + L D E+ CTVLQ++YS NA AL +LP G+M
Sbjct: 218 EEGSSFLVDKTTTVQVPMMHQMEQYYHLVDTELNCTVLQMDYSKNALALFVLPKEGQMEW 277
Query: 999 V 1001
V
Sbjct: 278 V 278
>ref|NP_001075181.1| SERPINA3-8 [Bos taurus].
Length = 418
Score = 223 bits (569), Expect = 2e-58
Identities = 124/288 (43%), Positives = 179/288 (62%), Gaps = 3/288 (1%)
Frame = +3
Query: 138 RMGPA-RLWLLGAGILASVHCQPFPAHGSKSLGGPEAPGRQLSGARPAYHKITPTLTDFA 314
RM P L LL +G+ + VHC P AP + G H + + TDFA
Sbjct: 5 RMSPLLALGLLVSGLCSRVHCLPENV----------APEERHKGTSVDGHSLASSNTDFA 54
Query: 315 LRLYKQLAAETPG-NIFFSPVSISSTLALLSLGAQADTPTQILEGLGFNLTEIPEADIHR 491
LYKQLA + P N+ FSP+SIS LA LSLGA+ T T+ILEGL FNLTE PE +IH+
Sbjct: 55 FSLYKQLALKNPNKNVIFSPLSISIALAFLSLGARGPTVTEILEGLKFNLTETPEREIHQ 114
Query: 492 GFQSLIRTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGALAFSANFTDSGTTR 671
GFQ L++ L PS++L++ VGN++F+ +QLK F ++ +Y + AFS NF D T +
Sbjct: 115 GFQHLLQMLSRPSNELQLSVGNTMFVQEQLKLLDKFREDALALYTSEAFSTNFKDPETAK 174
Query: 672 RQINDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNPYQTQKQESFFVDER 851
INDY++ +T G++VD ++ T ++L+NYI+FKA+W+ PF+P QT K + F V +
Sbjct: 175 SLINDYVKNKTRGKIVDLFKDLDPLTKVILVNYIYFKAQWRTPFDPKQTYKSQ-FHVSKN 233
Query: 852 TSLRVPMMRQKEM-HRFLYDHEVACTVLQIEYSGNAQALLILPDPGKM 992
++ VPMM ++ + D E+ CT++++ Y+ N AL ILPD GKM
Sbjct: 234 KTVEVPMMSIGDLVTPYFRDEELDCTLVELTYTSNDSALFILPDEGKM 281
>ref|NP_001139774.1| serpin A3-6 [Bos taurus].
Length = 414
Score = 218 bits (555), Expect = 7e-57
Identities = 115/280 (41%), Positives = 170/280 (60%), Gaps = 1/280 (0%)
Frame = +3
Query: 156 LWLLGAGILASVHCQPFPAHGSKSLGGPEAPGRQLSGARPAYHKITPTLTDFALRLYKQL 335
L +L AG+ + VHC P P Q H + + TDFA LYKQL
Sbjct: 12 LGILVAGLCSRVHCLPENV----------TPEEQHKVTSVDGHSLASSNTDFAFSLYKQL 61
Query: 336 AAETPG-NIFFSPVSISSTLALLSLGAQADTPTQILEGLGFNLTEIPEADIHRGFQSLIR 512
A + P N+ FSP+S+S LA LSLGA T T+ILEGL FNLTE PE +IH+GFQ L++
Sbjct: 62 ALKDPNKNVIFSPLSVSIALAFLSLGAHGPTVTEILEGLKFNLTETPETEIHQGFQHLLQ 121
Query: 513 TLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGALAFSANFTDSGTTRRQINDYL 692
T PS++L++ VGN++F+ ++LK F+++ R +Y + AF NF D + INDY+
Sbjct: 122 TFNQPSNQLQLSVGNAIFVQEELKLLDKFIEDARVLYSSEAFPTNFRDPEAAKSLINDYV 181
Query: 693 RKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNPYQTQKQESFFVDERTSLRVPM 872
+ +T G++ + ++ + T +VL+NY++FKA+WK F+P T+K E F V + ++ VPM
Sbjct: 182 KNKTQGKIEELFKDLSPRTELVLVNYVYFKAQWKTRFDPKHTEKTE-FHVSDNKTVEVPM 240
Query: 873 MRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGKM 992
M + D E+ CT++++ Y+ N AL ILPD GKM
Sbjct: 241 MTLDLETPYFRDEELGCTLVELTYTSNDSALFILPDKGKM 280
>ref|NP_776307.1| alpha-1-antiproteinase precursor [Bos taurus].
Length = 416
Score = 217 bits (552), Expect = 1e-56
Identities = 109/243 (44%), Positives = 166/243 (68%), Gaps = 1/243 (0%)
Frame = +3
Query: 276 AYHKITPTLTDFALRLYKQLAAET-PGNIFFSPVSISSTLALLSLGAQADTPTQILEGLG 452
A HKI P L +FA +Y LA ++ NIFFSPVSI+S A+LSLGA+ +T T+IL+GLG
Sbjct: 44 ACHKIAPNLANFAFSIYHHLAHQSNTSNIFFSPVSIASAFAMLSLGAKGNTHTEILKGLG 103
Query: 453 FNLTEIPEADIHRGFQSLIRTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGAL 632
FNLTE+ EA+IH+GFQ L+ TL P+ +L++ GN LF+++ K FL++++ +Y +
Sbjct: 104 FNLTELAEAEIHKGFQHLLHTLNQPNHQLQLTTGNGLFINESAKLVDTFLEDVKNLYHSE 163
Query: 633 AFSANFTDSGTTRRQINDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNPY 812
AFS NF D+ +++INDY+ K ++G++V+ ++ +T+ L+NYI FK KW+ PF
Sbjct: 164 AFSINFRDAEEAKKKINDYVEKGSHGKIVELVKVLDPNTVFALVNYISFKGKWEKPFEMK 223
Query: 813 QTQKQESFFVDERTSLRVPMMRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGKM 992
T +++ F VDE+T+++VPMM + M Y ++A VL ++Y GN A ILPD GK+
Sbjct: 224 HTTERD-FHVDEQTTVKVPMMNRLGMFDLHYCDKLASWVLLLDYVGNVTACFILPDLGKL 282
Query: 993 AQV 1001
Q+
Sbjct: 283 QQL 285
>ref|XP_002696874.1| PREDICTED: endopin 2C-like [Bos taurus].
Length = 417
Score = 216 bits (550), Expect = 3e-56
Identities = 121/287 (42%), Positives = 169/287 (58%), Gaps = 2/287 (0%)
Frame = +3
Query: 138 RMGPA-RLWLLGAGILASVHCQPFPAHGSKSLGGPEAPGRQLSGARPAYHKITPTLTDFA 314
RM P L LL +G+ + VHC P P Q H + + TDFA
Sbjct: 5 RMSPLLALGLLVSGLCSRVHCLPENV----------TPEEQHKVTSVDGHSLASSNTDFA 54
Query: 315 LRLYKQLAAETPG-NIFFSPVSISSTLALLSLGAQADTPTQILEGLGFNLTEIPEADIHR 491
LYKQLA + P N+ FSP+SIS LA LSLGA T T+ILEGL FNLTE PE +IH+
Sbjct: 55 FSLYKQLALKDPNKNVIFSPLSISIALAFLSLGAHGPTVTEILEGLKFNLTETPETEIHQ 114
Query: 492 GFQSLIRTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGALAFSANFTDSGTTR 671
GFQ L++T PS++L++ VGN++F+ ++LK F + Y + S NF DS
Sbjct: 115 GFQHLLQTFNQPSNQLQLSVGNAIFVPEELKLLDKFRKDAEAFYASEVLSINFKDSEAAV 174
Query: 672 RQINDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNPYQTQKQESFFVDER 851
+ IN+Y++ +T+G++ L + T ++LLNYIFFKA+WK PFNP T + E F V +
Sbjct: 175 KLINEYVKNKTHGKIEKLLNDLDVLTNLILLNYIFFKAQWKTPFNPNHTYESE-FHVSKN 233
Query: 852 TSLRVPMMRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGKM 992
++VPMM + + D E+ CT++++ Y+ N AL ILPD GKM
Sbjct: 234 ERVKVPMMTLRLETPYFRDEELGCTLVELTYTSNDSALFILPDEGKM 280
>ref|XP_001787316.2| PREDICTED: endopin 2C-like [Bos taurus].
Length = 411
Score = 216 bits (550), Expect = 3e-56
Identities = 121/287 (42%), Positives = 169/287 (58%), Gaps = 2/287 (0%)
Frame = +3
Query: 138 RMGPA-RLWLLGAGILASVHCQPFPAHGSKSLGGPEAPGRQLSGARPAYHKITPTLTDFA 314
RM P L LL +G+ + VHC P P Q H + + TDFA
Sbjct: 5 RMSPLLALGLLVSGLCSRVHCLPENV----------TPEEQHKVTSVDGHSLASSNTDFA 54
Query: 315 LRLYKQLAAETPG-NIFFSPVSISSTLALLSLGAQADTPTQILEGLGFNLTEIPEADIHR 491
LYKQLA + P N+ FSP+SIS LA LSLGA T T+ILEGL FNLTE PE +IH+
Sbjct: 55 FSLYKQLALKDPNKNVIFSPLSISIALAFLSLGAHGPTVTEILEGLKFNLTETPETEIHQ 114
Query: 492 GFQSLIRTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGALAFSANFTDSGTTR 671
GFQ L++T PS++L++ VGN++F+ ++LK F + Y + S NF DS
Sbjct: 115 GFQHLLQTFNQPSNQLQLSVGNAIFVPEELKLLDKFRKDAEAFYASEVLSINFKDSEAAV 174
Query: 672 RQINDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNPYQTQKQESFFVDER 851
+ IN+Y++ +T+G++ L + T ++LLNYIFFKA+WK PFNP T + E F V +
Sbjct: 175 KLINEYVKNKTHGKIEKLLNDLDVLTNLILLNYIFFKAQWKTPFNPNHTYESE-FHVSKN 233
Query: 852 TSLRVPMMRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGKM 992
++VPMM + + D E+ CT++++ Y+ N AL ILPD GKM
Sbjct: 234 ERVKVPMMTLRLETPYFRDEELGCTLVELTYTSNDSALFILPDEGKM 280
>ref|XP_001252670.1| PREDICTED: endopin 1b-like isoform 1 [Bos taurus].
Length = 299
Score = 214 bits (545), Expect = 1e-55
Identities = 119/280 (42%), Positives = 174/280 (62%), Gaps = 1/280 (0%)
Frame = +3
Query: 156 LWLLGAGILASVHCQPFPAHGSKSLGGPEAPGRQLSGARPAYHKITPTLTDFALRLYKQL 335
L LL AGI SVHC P R++ G H + + TDFA LYKQL
Sbjct: 12 LGLLVAGI-RSVHCLPENVVVKDR-------HRRVDG-----HTLASSNTDFAFSLYKQL 58
Query: 336 AAETPG-NIFFSPVSISSTLALLSLGAQADTPTQILEGLGFNLTEIPEADIHRGFQSLIR 512
A + P N+ FSP+S+S LA LSLGA+ T T+ILEGL FNLTEI E IH+GFQ L++
Sbjct: 59 ALKNPNKNVMFSPLSVSMALAFLSLGARGPTLTEILEGLKFNLTEIQETQIHQGFQHLLQ 118
Query: 513 TLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGALAFSANFTDSGTTRRQINDYL 692
L PS++L++ VGN++F+ ++LK F+++ R +Y + AF NF D + INDY+
Sbjct: 119 ALNRPSNQLQLSVGNAMFVQEELKLLDKFIEDARVLYSSEAFPTNFGDPEAAKSLINDYV 178
Query: 693 RKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNPYQTQKQESFFVDERTSLRVPM 872
+K+T G++ + ++ + T++VL+NYI+FKA+WK F+P T++ E F V + ++ VPM
Sbjct: 179 KKKTQGKIEELFKDLSPRTVLVLVNYIYFKAQWKTRFDPKHTEQAE-FHVSDNKTVEVPM 237
Query: 873 MRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGKM 992
M + D E+ CT++++ Y+ N AL ILPD GKM
Sbjct: 238 MTLDLETPYFRDEELGCTLVELTYTSNDSALFILPDKGKM 277
>ref|XP_001252712.1| PREDICTED: endopin 1b-like isoform 3 [Bos taurus].
Length = 299
Score = 214 bits (545), Expect = 1e-55
Identities = 119/280 (42%), Positives = 174/280 (62%), Gaps = 1/280 (0%)
Frame = +3
Query: 156 LWLLGAGILASVHCQPFPAHGSKSLGGPEAPGRQLSGARPAYHKITPTLTDFALRLYKQL 335
L LL AGI SVHC P R++ G H + + TDFA LYKQL
Sbjct: 12 LGLLVAGI-RSVHCLPENVVVKDR-------HRRVDG-----HTLASSNTDFAFSLYKQL 58
Query: 336 AAETPG-NIFFSPVSISSTLALLSLGAQADTPTQILEGLGFNLTEIPEADIHRGFQSLIR 512
A + P N+ FSP+S+S LA LSLGA+ T T+ILEGL FNLTEI E IH+GFQ L++
Sbjct: 59 ALKNPNKNVMFSPLSVSMALAFLSLGARGPTLTEILEGLKFNLTEIQETQIHQGFQHLLQ 118
Query: 513 TLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGALAFSANFTDSGTTRRQINDYL 692
L PS++L++ VGN++F+ ++LK F+++ R +Y + AF NF D + INDY+
Sbjct: 119 ALNRPSNQLQLSVGNAMFVQEELKLLDKFIEDARVLYSSEAFPTNFGDPEAAKSLINDYV 178
Query: 693 RKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNPYQTQKQESFFVDERTSLRVPM 872
+K+T G++ + ++ + T++VL+NYI+FKA+WK F+P T++ E F V + ++ VPM
Sbjct: 179 KKKTQGKIEELFKDLSPRTVLVLVNYIYFKAQWKTRFDPKHTEQAE-FHVSDNKTVEVPM 237
Query: 873 MRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGKM 992
M + D E+ CT++++ Y+ N AL ILPD GKM
Sbjct: 238 MTLDLETPYFRDEELGCTLVELTYTSNDSALFILPDKGKM 277
>ref|XP_001252647.3| PREDICTED: endopin 2B-like [Bos taurus].
Length = 417
Score = 214 bits (545), Expect = 1e-55
Identities = 121/287 (42%), Positives = 166/287 (57%), Gaps = 2/287 (0%)
Frame = +3
Query: 138 RMGPA-RLWLLGAGILASVHCQPFPAHGSKSLGGPEAPGRQLSGARPAYHKITPTLTDFA 314
RM P L LL +G + VHC P P Q G H + + TDFA
Sbjct: 5 RMSPLLALGLLVSGFCSRVHCLPENV----------TPEEQHKGTSVDGHSLASSNTDFA 54
Query: 315 LRLYKQLAAETPG-NIFFSPVSISSTLALLSLGAQADTPTQILEGLGFNLTEIPEADIHR 491
LYKQLA + P N+ FSP+SIS LA LSLGA T T+ILEGL FNLTE PE +IH+
Sbjct: 55 FSLYKQLALKDPNKNVIFSPLSISIALAFLSLGAHDHTVTEILEGLKFNLTETPETEIHQ 114
Query: 492 GFQSLIRTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGALAFSANFTDSGTTR 671
GFQ L++T PS++L++ VGN++F+ ++LK F + Y + S NF DS
Sbjct: 115 GFQHLLQTFNQPSNQLQLSVGNAMFVSEELKLLDKFRKDAEAFYASEVLSTNFKDSEAAV 174
Query: 672 RQINDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNPYQTQKQESFFVDER 851
+ IN+Y++ +T+G++ + T ++LLNYIFFKA+WK PFNP T + E F V +
Sbjct: 175 KLINEYVKNKTHGKIEKLFNDLDVLTNLILLNYIFFKAQWKTPFNPNHTYESE-FHVSQN 233
Query: 852 TSLRVPMMRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGKM 992
+ VPMM + D E+ CT++++ Y+ N AL ILPD GKM
Sbjct: 234 ERVIVPMMTLYLETPYFRDEELGCTLVELTYTSNDSALFILPDEGKM 280
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,247,060
Number of extensions: 1298587
Number of successful extensions: 5812
Number of sequences better than 1.0e-05: 85
Number of HSP's gapped: 5631
Number of HSP's successfully gapped: 85
Length of query: 333
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 230
Effective length of database: 14,273,310
Effective search space: 3282861300
Effective search space used: 3282861300
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012614
(1001 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003356835.1| PREDICTED: serpin A11 [Sus scrofa]. 574 e-164
Alignment gi|XP_001928507.1| PREDICTED: serpin A11 [Sus scrofa]. 565 e-161
Alignment gi|XP_003361568.1| PREDICTED: thyroxine-binding globulin-like [... 241 5e-64
Alignment gi|NP_999223.1| thyroxine-binding globulin precursor [Sus scrof... 241 5e-64
Alignment gi|XP_003356840.1| PREDICTED: LOW QUALITY PROTEIN: kallistatin-... 228 5e-60
Alignment gi|NP_998952.1| alpha-1-antichymotrypsin 2 [Sus scrofa]. 224 6e-59
Alignment gi|XP_001928857.3| PREDICTED: serpin A3-8 [Sus scrofa]. 222 2e-58
Alignment gi|XP_001928879.1| PREDICTED: serpin A3-6 [Sus scrofa]. 220 1e-57
Alignment gi|XP_001928637.3| PREDICTED: serpin A3-5 [Sus scrofa]. 216 2e-56
Alignment gi|NP_999560.1| alpha-1-antitrypsin precursor [Sus scrofa]. 214 8e-56
>ref|XP_003356835.1| PREDICTED: serpin A11 [Sus scrofa].
Length = 422
Score = 574 bits (1480), Expect = e-164
Identities = 286/287 (99%), Positives = 286/287 (99%)
Frame = +3
Query: 141 MGPARLWLLGAGILASVHCQPFPAHGSKSLGGPEAPGRQLSGARPAYHKITPTLTDFALR 320
MGPARLWLLGAGILASVH QPFPAHGSKSLGGPEAPGRQLSGARPAYHKITPTLTDFALR
Sbjct: 1 MGPARLWLLGAGILASVHRQPFPAHGSKSLGGPEAPGRQLSGARPAYHKITPTLTDFALR 60
Query: 321 LYKQLAAETPGNIFFSPVSISSTLALLSLGAQADTPTQILEGLGFNLTEIPEADIHRGFQ 500
LYKQLAAETPGNIFFSPVSISSTLALLSLGAQADTPTQILEGLGFNLTEIPEADIHRGFQ
Sbjct: 61 LYKQLAAETPGNIFFSPVSISSTLALLSLGAQADTPTQILEGLGFNLTEIPEADIHRGFQ 120
Query: 501 SLIRTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGALAFSANFTDSGTTRRQI 680
SLIRTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGALAFSANFTDSGTTRRQI
Sbjct: 121 SLIRTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGALAFSANFTDSGTTRRQI 180
Query: 681 NDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNPYQTQKQESFFVDERTSL 860
NDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNPYQTQKQESFFVDERTSL
Sbjct: 181 NDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNPYQTQKQESFFVDERTSL 240
Query: 861 RVPMMRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGKMAQV 1001
RVPMMRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGKMAQV
Sbjct: 241 RVPMMRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGKMAQV 287
>ref|XP_001928507.1| PREDICTED: serpin A11 [Sus scrofa].
Length = 421
Score = 565 bits (1455), Expect = e-161
Identities = 284/287 (98%), Positives = 284/287 (98%)
Frame = +3
Query: 141 MGPARLWLLGAGILASVHCQPFPAHGSKSLGGPEAPGRQLSGARPAYHKITPTLTDFALR 320
MGPARLWLLGAGILASVH QPFPAHGSKSLG PEAPGRQLSGARPAYHKITPTLTDFALR
Sbjct: 1 MGPARLWLLGAGILASVH-QPFPAHGSKSLGVPEAPGRQLSGARPAYHKITPTLTDFALR 59
Query: 321 LYKQLAAETPGNIFFSPVSISSTLALLSLGAQADTPTQILEGLGFNLTEIPEADIHRGFQ 500
LYKQLAAETPGNIFFSPVSISSTLALLSLGAQADTPTQILEGLGFNLTEIPEADIHRGFQ
Sbjct: 60 LYKQLAAETPGNIFFSPVSISSTLALLSLGAQADTPTQILEGLGFNLTEIPEADIHRGFQ 119
Query: 501 SLIRTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGALAFSANFTDSGTTRRQI 680
SLIRTL LPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGALAFSANFTDSGTTRRQI
Sbjct: 120 SLIRTLDLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGALAFSANFTDSGTTRRQI 179
Query: 681 NDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNPYQTQKQESFFVDERTSL 860
NDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNPYQTQKQESFFVDERTSL
Sbjct: 180 NDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNPYQTQKQESFFVDERTSL 239
Query: 861 RVPMMRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGKMAQV 1001
RVPMMRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGKMAQV
Sbjct: 240 RVPMMRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGKMAQV 286
>ref|XP_003361568.1| PREDICTED: thyroxine-binding globulin-like [Sus scrofa].
Length = 420
Score = 241 bits (615), Expect = 5e-64
Identities = 117/241 (48%), Positives = 174/241 (72%), Gaps = 1/241 (0%)
Frame = +3
Query: 282 HKITPTLTDFALRLYKQLAAETPG-NIFFSPVSISSTLALLSLGAQADTPTQILEGLGFN 458
HK++ DFA LY++ A ETP NIFFSPVSIS+ LA+LS GA + T TQILE LG+N
Sbjct: 47 HKMSSINADFAFNLYRRFAVETPDQNIFFSPVSISAALAMLSFGACSSTQTQILESLGYN 106
Query: 459 LTEIPEADIHRGFQSLIRTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGALAF 638
LTE+P A+I +GFQ LI +L P +LE+++GN+LF++KQLKP FLD+++ +Y F
Sbjct: 107 LTEMPMAEIQQGFQHLICSLNFPKKELELQMGNALFIEKQLKPLAKFLDDVKNLYETEVF 166
Query: 639 SANFTDSGTTRRQINDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNPYQT 818
S +F++ ++++N ++ +QT G++V + + +T+MVL+NYI FKA+W +PF+P +T
Sbjct: 167 STDFSNVSAAQQELNSHVERQTKGKIVGLIPDLKPNTIMVLVNYICFKAQWANPFDPSKT 226
Query: 819 QKQESFFVDERTSLRVPMMRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGKMAQ 998
++ SF VD+ T+++VPMM Q E + L D E+ CTVLQ++YS NA AL +LP+ G+M
Sbjct: 227 EEGSSFLVDKTTTVQVPMMHQMEQYYNLVDTELNCTVLQMDYSKNALALFVLPNEGQMEW 286
Query: 999 V 1001
V
Sbjct: 287 V 287
>ref|NP_999223.1| thyroxine-binding globulin precursor [Sus scrofa].
Length = 412
Score = 241 bits (615), Expect = 5e-64
Identities = 117/241 (48%), Positives = 174/241 (72%), Gaps = 1/241 (0%)
Frame = +3
Query: 282 HKITPTLTDFALRLYKQLAAETPG-NIFFSPVSISSTLALLSLGAQADTPTQILEGLGFN 458
HK++ DFA LY++ A ETP NIFFSPVSIS+ LA+LS GA + T TQILE LG+N
Sbjct: 39 HKMSSINADFAFNLYRRFAVETPDQNIFFSPVSISAALAMLSFGACSSTQTQILESLGYN 98
Query: 459 LTEIPEADIHRGFQSLIRTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGALAF 638
LTE+P A+I +GFQ LI +L P +LE+++GN+LF++KQLKP FLD+++ +Y F
Sbjct: 99 LTEMPMAEIQQGFQHLICSLNFPKKELELQMGNALFIEKQLKPLAKFLDDVKNLYETEVF 158
Query: 639 SANFTDSGTTRRQINDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNPYQT 818
S +F++ ++++N ++ +QT G++V + + +T+MVL+NYI FKA+W +PF+P +T
Sbjct: 159 STDFSNVSAAQQELNSHVERQTKGKIVGLIPDLKPNTIMVLVNYICFKAQWANPFDPSKT 218
Query: 819 QKQESFFVDERTSLRVPMMRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGKMAQ 998
++ SF VD+ T+++VPMM Q E + L D E+ CTVLQ++YS NA AL +LP+ G+M
Sbjct: 219 EEGSSFLVDKTTTVQVPMMHQMEQYYNLVDTELNCTVLQMDYSKNALALFVLPNEGQMEW 278
Query: 999 V 1001
V
Sbjct: 279 V 279
>ref|XP_003356840.1| PREDICTED: LOW QUALITY PROTEIN: kallistatin-like [Sus scrofa].
Length = 424
Score = 228 bits (580), Expect = 5e-60
Identities = 130/285 (45%), Positives = 183/285 (64%), Gaps = 3/285 (1%)
Frame = +3
Query: 156 LWLLGAGILASVHCQPFPAH-GSKSLGGPEAPGRQLSGARPAYHKITPTLTDFALRLYKQ 332
L LL AG+LA Q H G EAPG +G +I+P T FAL Y
Sbjct: 7 LLLLLAGLLALSQGQLHSEHQGHSHHPHQEAPG---TGKGSLSLRISPGNTVFALHFYHL 63
Query: 333 LAAETPG-NIFFSPVSISSTLALLSLGAQADTPTQILEGLGFNLTEIPEADIHRGFQSLI 509
+ ++TPG NIFFSP+SIS+ A+LSLGA + + TQILEGLGFNLTE+ + D H+GFQ+L+
Sbjct: 64 MVSQTPGSNIFFSPLSISAAYAMLSLGAGSLSRTQILEGLGFNLTEVSQPDTHQGFQNLL 123
Query: 510 RTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGALAFSANFTDSGTTRRQINDY 689
TL LP +LE+ +GN+LFL ++ FL++ Y + ANF T + IN++
Sbjct: 124 HTLHLPDDRLEIHMGNALFLSPEVLLLPXFLNDSERFYESKLLHANFXKPAGTAQLINNH 183
Query: 690 LRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNPYQTQKQESFFVDERTSLRVP 869
++++T G++VD + + DT MVL+NYI+FKA W+ PFNP T Q+ F+VDE T+++VP
Sbjct: 184 VKEETQGKIVDLVSGLSPDTTMVLVNYIYFKALWEKPFNPSMTIPQD-FYVDEVTTVKVP 242
Query: 870 MMRQKEMHR-FLYDHEVACTVLQIEYSGNAQALLILPDPGKMAQV 1001
MM Q H +L+D CTVL+++Y G+A AL ILP+ GKM +V
Sbjct: 243 MMMQGPQHHWYLHDRHFPCTVLRMDYKGDATALFILPNXGKMDEV 287
>ref|NP_998952.1| alpha-1-antichymotrypsin 2 [Sus scrofa].
Length = 415
Score = 224 bits (571), Expect = 6e-59
Identities = 126/285 (44%), Positives = 183/285 (64%), Gaps = 3/285 (1%)
Frame = +3
Query: 156 LWLLGAGILASVHCQPFPAHGSKSLGGPEAPGRQLSGARPAYHK-ITPTLTDFALRLYKQ 332
L LL AG+ + VHC P SK + + + PA++ + + TDFA LYKQ
Sbjct: 7 LGLLVAGLCSRVHCVPADDPASKIVTLKDQIKKL-----PAHNTAVVSSNTDFAFSLYKQ 61
Query: 333 LAAETPG-NIFFSPVSISSTLALLSLGAQADTPTQILEGLGFNLTEIPEADIHRGFQSLI 509
LA P N+ FSP+S+S LA LSLGA+ T T++LEGL FNLT+ PEA+IH+GFQ L+
Sbjct: 62 LALTNPHENVIFSPLSVSMALAFLSLGARGPTLTELLEGLKFNLTKTPEAEIHQGFQHLL 121
Query: 510 RTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGALAFSANFTDSGTTRRQINDY 689
TL S+ L++++GN++F+D+QL+ F+ + E+Y + AF NF D RR INDY
Sbjct: 122 STLDRSSNLLQLRLGNAMFIDEQLELLDKFVQDAHELYHSEAFPTNFQDLEAARRLINDY 181
Query: 690 LRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNPYQTQKQESFFVDERTSLRVP 869
++ +T G++VD ++ T +VL+NYI+FKAKWK PFNP T + + F V + ++RVP
Sbjct: 182 VKNKTEGKIVDLFKKLDPLTKVVLVNYIYFKAKWKTPFNPNLTTEAD-FHVSKNRTVRVP 240
Query: 870 MMRQKEMH-RFLYDHEVACTVLQIEYSGNAQALLILPDPGKMAQV 1001
MM + + + D E+ACTV+++ Y+ N AL ILPD G+MA V
Sbjct: 241 MMGIRALTVPYFRDEELACTVVELPYTSNDSALFILPDDGRMAAV 285
>ref|XP_001928857.3| PREDICTED: serpin A3-8 [Sus scrofa].
Length = 423
Score = 222 bits (566), Expect = 2e-58
Identities = 126/288 (43%), Positives = 184/288 (63%), Gaps = 6/288 (2%)
Frame = +3
Query: 156 LWLLGAGILASVHCQPFPAHGSKSLGGPEAPGRQLSGA---RPAYHK-ITPTLTDFALRL 323
L LL AG+ + VHC P SK++ L G PA++ + + TDFA L
Sbjct: 12 LGLLVAGLCSRVHCVPADDLASKTV--------TLKGQITKLPAHNTAVVSSNTDFAFSL 63
Query: 324 YKQLAAETPG-NIFFSPVSISSTLALLSLGAQADTPTQILEGLGFNLTEIPEADIHRGFQ 500
YKQL + P N+ FSP+S+S LA LSLGA+ T T++LEGL FNLT+ PEA+IH+GFQ
Sbjct: 64 YKQLVSLDPNKNVIFSPLSVSIALAFLSLGARGSTLTELLEGLKFNLTKTPEAEIHQGFQ 123
Query: 501 SLIRTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGALAFSANFTDSGTTRRQI 680
L+R L PS+ L++ VGN++F+D++LK F+ + RE+Y + FS +F DS I
Sbjct: 124 HLLRALSQPSNLLQLNVGNAMFVDERLKLLDKFVQDARELYFSEVFSISFKDSDAAVEFI 183
Query: 681 NDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNPYQTQKQESFFVDERTSL 860
N+Y++ +T G++VD ++ + DT++VL+N I+FKAKWK PF+P T + + F V + ++
Sbjct: 184 NNYVKNKTKGKIVDLFKQLSPDTVLVLVNCIYFKAKWKTPFDPSFTTEAD-FHVSKNRTV 242
Query: 861 RVPMMR-QKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGKMAQV 1001
RVPMM + D E+ACTV+++ Y+ N AL ILPD G+MA V
Sbjct: 243 RVPMMGISGRTLPYFRDEELACTVVELPYTSNDSALFILPDDGRMAAV 290
>ref|XP_001928879.1| PREDICTED: serpin A3-6 [Sus scrofa].
Length = 423
Score = 220 bits (560), Expect = 1e-57
Identities = 123/286 (43%), Positives = 181/286 (63%), Gaps = 4/286 (1%)
Frame = +3
Query: 156 LWLLGAGILASVHCQPFPAHGSK--SLGGPEAPGRQLSGARPAYHKITPTLTDFALRLYK 329
L LL AG+ + VHC P SK +L G Q++ + + TDFA LYK
Sbjct: 12 LGLLVAGLCSRVHCVPADDLASKIVTLKG------QITKLPAHNTAVVSSNTDFAFSLYK 65
Query: 330 QLAAETPG-NIFFSPVSISSTLALLSLGAQADTPTQILEGLGFNLTEIPEADIHRGFQSL 506
QL + P N+ FSP+S+S LA LSLGAQ T T++LEGL FNLT+ PEA+IH+GFQ L
Sbjct: 66 QLVSLDPSKNVIFSPLSVSIALAFLSLGAQGSTLTELLEGLKFNLTKTPEAEIHQGFQHL 125
Query: 507 IRTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGALAFSANFTDSGTTRRQIND 686
++ L PS+ L++ VGN++F+D+ LK F+ + RE+Y + AF NF D RR IND
Sbjct: 126 LQALSQPSNLLQLNVGNAMFVDEHLKLLDKFVQDARELYHSEAFPTNFQDLEAARRLIND 185
Query: 687 YLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNPYQTQKQESFFVDERTSLRV 866
Y++ +T G++V+ +++ T+ VL+NYI+FKA+W F+P T + + F+V + +++V
Sbjct: 186 YVKNKTEGKIVELIKKLFPRTVAVLVNYIYFKAQWMTHFDPNLTTEAD-FYVSKNKTVKV 244
Query: 867 PMMRQKEMH-RFLYDHEVACTVLQIEYSGNAQALLILPDPGKMAQV 1001
PMM K + + D E+ACTV+++ Y+ N L ILPD G+MA V
Sbjct: 245 PMMGIKNLTVPYFRDEELACTVVELPYTSNDSTLFILPDDGRMAAV 290
>ref|XP_001928637.3| PREDICTED: serpin A3-5 [Sus scrofa].
Length = 393
Score = 216 bits (550), Expect = 2e-56
Identities = 113/246 (45%), Positives = 167/246 (67%), Gaps = 3/246 (1%)
Frame = +3
Query: 273 PAYHK-ITPTLTDFALRLYKQLAAETPG-NIFFSPVSISSTLALLSLGAQADTPTQILEG 446
PA++ + + TDFA LYKQLA P N+ FSP+S+S LA LSLGA+ T T++LEG
Sbjct: 77 PAHNTAVVSSNTDFAFSLYKQLALTNPHENVIFSPLSVSMALAFLSLGARGPTLTELLEG 136
Query: 447 LGFNLTEIPEADIHRGFQSLIRTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYG 626
L FNLT+ PEA+IH+GFQ L+ TL S+ L++++GN++F+D+QL+ F+ + E+Y
Sbjct: 137 LKFNLTKTPEAEIHQGFQHLLSTLDRSSNLLQLRLGNAMFIDEQLELLDKFVQDAHELYH 196
Query: 627 ALAFSANFTDSGTTRRQINDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFN 806
+ AF NF D RR INDY++ +T G++VD ++ T +VL+NYI+FKAKWK PF+
Sbjct: 197 SEAFPTNFQDLEAARRLINDYVKNKTEGKIVDLFKKLDPLTKVVLVNYIYFKAKWKTPFD 256
Query: 807 PYQTQKQESFFVDERTSLRVPMMRQKEMHR-FLYDHEVACTVLQIEYSGNAQALLILPDP 983
P T + +F V + +++VPMM + + + D E+ACTV+++ Y+ N AL ILPD
Sbjct: 257 PEHT-IESTFHVSKNRTVKVPMMSLRGLETPYFRDEELACTVVELPYTSNDSALFILPDD 315
Query: 984 GKMAQV 1001
G+MA V
Sbjct: 316 GRMAAV 321
>ref|NP_999560.1| alpha-1-antitrypsin precursor [Sus scrofa].
Length = 421
Score = 214 bits (544), Expect = 8e-56
Identities = 109/243 (44%), Positives = 160/243 (65%), Gaps = 1/243 (0%)
Frame = +3
Query: 276 AYHKITPTLTDFALRLYKQLAAET-PGNIFFSPVSISSTLALLSLGAQADTPTQILEGLG 452
A H+I P L DFA LY+Q+A ++ NIF SPV+I+ A+LSLG + T +ILEGL
Sbjct: 49 ACHRIAPNLADFAFSLYRQVARQSNTSNIFLSPVTIARAFAMLSLGTKGATHAEILEGLQ 108
Query: 453 FNLTEIPEADIHRGFQSLIRTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGAL 632
FNLTE EA+IH GFQ L+ TL P ++L++ GN LF+D++ K FL++++ +Y +
Sbjct: 109 FNLTEKAEAEIHEGFQHLLHTLNQPDNQLQLTTGNGLFIDEKAKLVPKFLEDVKNLYHSE 168
Query: 633 AFSANFTDSGTTRRQINDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNPY 812
AFS NF D+ ++ INDY+ K + G++VD ++E +DT+ L+NYIFFK KW+ PF
Sbjct: 169 AFSINFRDTEEAKKCINDYVEKGSQGKIVDLVDELDKDTVFALVNYIFFKGKWEKPFEVE 228
Query: 813 QTQKQESFFVDERTSLRVPMMRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGKM 992
QT +E F VDE T+++VPMM + M + +++ VL ++Y A A ILPD GK+
Sbjct: 229 QT-TEEDFHVDEETTVKVPMMNRLGMFDLHHCDKLSSWVLLMDYVATATAFFILPDQGKL 287
Query: 993 AQV 1001
Q+
Sbjct: 288 HQL 290
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,714,232
Number of extensions: 847341
Number of successful extensions: 3918
Number of sequences better than 1.0e-05: 37
Number of HSP's gapped: 3829
Number of HSP's successfully gapped: 38
Length of query: 333
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 234
Effective length of database: 8,879,129
Effective search space: 2077716186
Effective search space used: 2077716186
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012614
(1001 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001159822.1| serpin A11 isoform 2 precursor [Mus musculus]. 417 e-117
Alignment gi|NP_955018.2| serpin A11 isoform 1 precursor [Mus musculus]. 417 e-117
Alignment gi|NP_033273.1| alpha-1-antitrypsin 1-5 precursor [Mus musculus]. 223 1e-58
Alignment gi|NP_808588.3| thyroxine-binding globulin precursor [Mus muscu... 223 1e-58
Alignment gi|NP_033272.1| alpha-1-antitrypsin 1-4 precursor [Mus musculus]. 223 2e-58
Alignment gi|XP_003086957.1| PREDICTED: serine protease inhibitor A3K-lik... 222 4e-58
Alignment gi|NP_082273.1| serpin A9 precursor [Mus musculus]. 221 9e-58
Alignment gi|NP_033269.1| alpha-1-antitrypsin 1-1 precursor [Mus musculus]. 221 9e-58
Alignment gi|NP_033271.1| alpha-1-antitrypsin 1-3 [Mus musculus]. 220 2e-57
Alignment gi|NP_033270.3| alpha-1-antitrypsin 1-2 precursor [Mus musculus]. 219 2e-57
>ref|NP_001159822.1| serpin A11 isoform 2 precursor [Mus musculus].
Length = 425
Score = 417 bits (1072), Expect = e-117
Identities = 208/289 (71%), Positives = 236/289 (81%), Gaps = 2/289 (0%)
Frame = +3
Query: 141 MGPARLWL--LGAGILASVHCQPFPAHGSKSLGGPEAPGRQLSGARPAYHKITPTLTDFA 314
MGP LWL L A +L VHCQPF AHG KSLG + Q PAYHK+TPT+T+FA
Sbjct: 2 MGPVWLWLWLLVAEVLLPVHCQPFSAHGDKSLGASQPASHQSLEPAPAYHKVTPTITNFA 61
Query: 315 LRLYKQLAAETPGNIFFSPVSISSTLALLSLGAQADTPTQILEGLGFNLTEIPEADIHRG 494
LRLYKQLA E GNI FSPVS+SS+LALLSLGA ADT TQILE LGFNLTE P AD+HRG
Sbjct: 62 LRLYKQLAEEVAGNILFSPVSLSSSLALLSLGAHADTQTQILESLGFNLTETPAADVHRG 121
Query: 495 FQSLIRTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGALAFSANFTDSGTTRR 674
FQSL+ TL LPS KLE+K+G+ LFLD+QLKPQQ FLD+ +E+YGALAFSANFT++ T +
Sbjct: 122 FQSLLHTLDLPSPKLELKLGHFLFLDRQLKPQQRFLDSAKELYGALAFSANFTEAAATGQ 181
Query: 675 QINDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNPYQTQKQESFFVDERT 854
QIND +RKQTYGQVV CL EF+ DTLMVLLNYIFFKAK KHPF+ YQT+KQESF +D+RT
Sbjct: 182 QINDLVRKQTYGQVVGCLPEFSHDTLMVLLNYIFFKAKCKHPFDRYQTRKQESFSLDQRT 241
Query: 855 SLRVPMMRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGKMAQV 1001
LR+PMMRQKEMHRFLYD E +CTVLQIEYSG A LL+LPDPGKM QV
Sbjct: 242 PLRIPMMRQKEMHRFLYDQEASCTVLQIEYSGTALLLLVLPDPGKMQQV 290
>ref|NP_955018.2| serpin A11 isoform 1 precursor [Mus musculus].
Length = 427
Score = 417 bits (1072), Expect = e-117
Identities = 208/289 (71%), Positives = 236/289 (81%), Gaps = 2/289 (0%)
Frame = +3
Query: 141 MGPARLWL--LGAGILASVHCQPFPAHGSKSLGGPEAPGRQLSGARPAYHKITPTLTDFA 314
MGP LWL L A +L VHCQPF AHG KSLG + Q PAYHK+TPT+T+FA
Sbjct: 4 MGPVWLWLWLLVAEVLLPVHCQPFSAHGDKSLGASQPASHQSLEPAPAYHKVTPTITNFA 63
Query: 315 LRLYKQLAAETPGNIFFSPVSISSTLALLSLGAQADTPTQILEGLGFNLTEIPEADIHRG 494
LRLYKQLA E GNI FSPVS+SS+LALLSLGA ADT TQILE LGFNLTE P AD+HRG
Sbjct: 64 LRLYKQLAEEVAGNILFSPVSLSSSLALLSLGAHADTQTQILESLGFNLTETPAADVHRG 123
Query: 495 FQSLIRTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGALAFSANFTDSGTTRR 674
FQSL+ TL LPS KLE+K+G+ LFLD+QLKPQQ FLD+ +E+YGALAFSANFT++ T +
Sbjct: 124 FQSLLHTLDLPSPKLELKLGHFLFLDRQLKPQQRFLDSAKELYGALAFSANFTEAAATGQ 183
Query: 675 QINDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNPYQTQKQESFFVDERT 854
QIND +RKQTYGQVV CL EF+ DTLMVLLNYIFFKAK KHPF+ YQT+KQESF +D+RT
Sbjct: 184 QINDLVRKQTYGQVVGCLPEFSHDTLMVLLNYIFFKAKCKHPFDRYQTRKQESFSLDQRT 243
Query: 855 SLRVPMMRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGKMAQV 1001
LR+PMMRQKEMHRFLYD E +CTVLQIEYSG A LL+LPDPGKM QV
Sbjct: 244 PLRIPMMRQKEMHRFLYDQEASCTVLQIEYSGTALLLLVLPDPGKMQQV 292
>ref|NP_033273.1| alpha-1-antitrypsin 1-5 precursor [Mus musculus].
Length = 413
Score = 223 bits (569), Expect = 1e-58
Identities = 115/241 (47%), Positives = 161/241 (66%), Gaps = 1/241 (0%)
Frame = +3
Query: 273 PAYHKITPTLTDFALRLYKQLAAET-PGNIFFSPVSISSTLALLSLGAQADTPTQILEGL 449
PA H+I L DFA+ LY++L ++ NIFFSPVSI++ A+LSLG++ DT TQILEGL
Sbjct: 39 PASHEIATNLGDFAISLYRELVHQSNTSNIFFSPVSIATAFAMLSLGSKGDTHTQILEGL 98
Query: 450 GFNLTEIPEADIHRGFQSLIRTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGA 629
FNLT+ EADIH FQ L++TL P S+L++ GN LF++ LK + FL+ + Y A
Sbjct: 99 QFNLTQTSEADIHNSFQHLLQTLNRPDSELQLSTGNGLFVNNDLKLVEKFLEEAKNHYQA 158
Query: 630 LAFSANFTDSGTTRRQINDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNP 809
FS NF +S ++ IND++ K T G++V+ +++ QDT+ VL NYI FK KWK PF+P
Sbjct: 159 EVFSVNFAESEEAKKVINDFVEKGTQGKIVEAVKKLEQDTVFVLANYILFKGKWKKPFDP 218
Query: 810 YQTQKQESFFVDERTSLRVPMMRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGK 989
T KQ F VDE T+++VPMM M + ++ VL ++Y+GNA A+ +LPD GK
Sbjct: 219 ENT-KQAEFHVDESTTVKVPMMTLSGMLDVHHCSTLSSWVLLMDYAGNATAVFLLPDDGK 277
Query: 990 M 992
M
Sbjct: 278 M 278
>ref|NP_808588.3| thyroxine-binding globulin precursor [Mus musculus].
Length = 426
Score = 223 bits (569), Expect = 1e-58
Identities = 116/283 (40%), Positives = 178/283 (62%), Gaps = 1/283 (0%)
Frame = +3
Query: 156 LWLLGAGILASVHCQPFPAHGSKSLGGPEAPGRQLSGARPAYHKITPTLTDFALRLYKQL 335
L++L G+ A++HC P + K L +K+ DFA LY++L
Sbjct: 15 LFVLVFGLQATIHCAPHNSSEGK------VTTCHLPQQNATLYKMPSINADFAFSLYRRL 68
Query: 336 AAETPG-NIFFSPVSISSTLALLSLGAQADTPTQILEGLGFNLTEIPEADIHRGFQSLIR 512
+ E P NIFFSPVSIS LA+LS G+ + T TQILE LGFNLT+ P ++ +GFQ LI
Sbjct: 69 SVENPDLNIFFSPVSISVALAMLSFGSGSSTQTQILEVLGFNLTDTPVTELQQGFQHLIC 128
Query: 513 TLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGALAFSANFTDSGTTRRQINDYL 692
+L P ++LE+++GN++F+ +QLKP FLD+++ +Y FS +F++ + +IN Y+
Sbjct: 129 SLNFPKNELELQMGNAVFIGQQLKPLAKFLDDVKTLYETEVFSTDFSNVSAAQHKINSYV 188
Query: 693 RKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNPYQTQKQESFFVDERTSLRVPM 872
KQT G++V ++ + +M+L+NYI F+A+W +PF +T++ +F VD+ T+++VPM
Sbjct: 189 EKQTKGKIVGLIQGLKLNIIMILVNYIHFRAQWANPFRVSKTEESSNFSVDKSTTVQVPM 248
Query: 873 MRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGKMAQV 1001
M Q E + D E+ CTVLQ++YS NA AL +LP G M V
Sbjct: 249 MHQLEQYYHYVDMELNCTVLQMDYSENALALFVLPKEGHMEWV 291
>ref|NP_033272.1| alpha-1-antitrypsin 1-4 precursor [Mus musculus].
Length = 413
Score = 223 bits (568), Expect = 2e-58
Identities = 114/241 (47%), Positives = 162/241 (67%), Gaps = 1/241 (0%)
Frame = +3
Query: 273 PAYHKITPTLTDFALRLYKQLAAET-PGNIFFSPVSISSTLALLSLGAQADTPTQILEGL 449
PA H+I L DFALRLY++L ++ NIFFSPVSI++ A+LSLG++ DT TQILEGL
Sbjct: 39 PASHEIATNLGDFALRLYRELVHQSNTSNIFFSPVSIATAFAMLSLGSKGDTHTQILEGL 98
Query: 450 GFNLTEIPEADIHRGFQSLIRTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGA 629
FNLT+ EADIH+ FQ L++TL P S+L++ GN LF++ LK + FL+ + Y A
Sbjct: 99 QFNLTQTSEADIHKSFQHLLQTLNRPDSELQLSTGNGLFVNNDLKLVEKFLEEAKNHYQA 158
Query: 630 LAFSANFTDSGTTRRQINDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNP 809
FS NF +S ++ IND++ K T G++V+ +++ QDT+ L NYI FK KWK PF+P
Sbjct: 159 EVFSVNFAESEEAKKVINDFVEKGTQGKIVEAVKKLDQDTVFALANYILFKGKWKQPFDP 218
Query: 810 YQTQKQESFFVDERTSLRVPMMRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGK 989
T++ E F VDE T+++VPMM M + ++ VL ++Y+GN A+ +LPD GK
Sbjct: 219 ENTEEAE-FHVDESTTVKVPMMTLSGMLDVHHCSMLSSWVLLMDYAGNTTAVFLLPDDGK 277
Query: 990 M 992
M
Sbjct: 278 M 278
>ref|XP_003086957.1| PREDICTED: serine protease inhibitor A3K-like [Mus musculus].
Length = 382
Score = 222 bits (565), Expect = 4e-58
Identities = 114/235 (48%), Positives = 164/235 (69%), Gaps = 2/235 (0%)
Frame = +3
Query: 303 TDFALRLYKQLAAETPG-NIFFSPVSISSTLALLSLGAQADTPTQILEGLGFNLTEIPEA 479
TDFA LYK+LA + P NI FSP+SIS+ LAL+SLGA+ T +ILEGL FNLTE PEA
Sbjct: 25 TDFAFSLYKKLALKNPDTNIVFSPLSISAALALVSLGAKGKTMEEILEGLKFNLTETPEA 84
Query: 480 DIHRGFQSLIRTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGALAFSANFTDS 659
DIH+GF +L+++L P + ++ +GN++F++K L+ F + R +Y AF+A+F
Sbjct: 85 DIHQGFGNLLQSLSQPEDQDQINIGNAMFIEKDLQILAEFHEKTRALYQTEAFTADFQQP 144
Query: 660 GTTRRQINDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNPYQTQKQESFF 839
+ INDY+ QT G + + + E + TLMVL+NYI+FK KWK F+P T + E F+
Sbjct: 145 TEAKNLINDYVSNQTQGMIKELISELDERTLMVLVNYIYFKGKWKISFDPQDTFESE-FY 203
Query: 840 VDERTSLRVPMMRQKEM-HRFLYDHEVACTVLQIEYSGNAQALLILPDPGKMAQV 1001
+DE+ S++VPMM+ K + R D E++C+VL+++Y+GNA ALLILPD G+M QV
Sbjct: 204 LDEKRSVKVPMMKMKLLTTRHFRDEELSCSVLELKYTGNASALLILPDQGRMQQV 258
>ref|NP_082273.1| serpin A9 precursor [Mus musculus].
Length = 418
Score = 221 bits (562), Expect = 9e-58
Identities = 110/240 (45%), Positives = 163/240 (67%), Gaps = 1/240 (0%)
Frame = +3
Query: 285 KITPTLTDFALRLYKQLAAETPG-NIFFSPVSISSTLALLSLGAQADTPTQILEGLGFNL 461
+++P+ T F+ LY++LA E PG NI FSPVSIS++LA+LSLGA++ T TQIL LGFN
Sbjct: 45 QVSPSNTRFSFLLYQRLAQENPGQNILFSPVSISTSLAMLSLGARSATKTQILRTLGFNF 104
Query: 462 TEIPEADIHRGFQSLIRTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGALAFS 641
T + E IH GF+ L+R+L E+++G+ LF+ K+L+ Q FLD ++++YGA FS
Sbjct: 105 TWVSEPTIHMGFEYLVRSLNKCHQGRELRMGSVLFIRKELQLQATFLDRVKKLYGAKVFS 164
Query: 642 ANFTDSGTTRRQINDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNPYQTQ 821
+F+++ T + QIN Y+ K+T G+VVD +++ T MVL+N+IFFKA W PF+ T
Sbjct: 165 EDFSNAATAQAQINSYVEKETKGKVVDVIQDLDSQTAMVLVNHIFFKANWTQPFSTANTN 224
Query: 822 KQESFFVDERTSLRVPMMRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGKMAQV 1001
K F + + T++ VPMM Q E F D E+ C++LQ++Y G+A A +LP GKM Q+
Sbjct: 225 KSFPFLLSKGTTVHVPMMHQTESFAFGVDKELGCSILQMDYRGDAVAFFVLPGKGKMRQL 284
>ref|NP_033269.1| alpha-1-antitrypsin 1-1 precursor [Mus musculus].
Length = 413
Score = 221 bits (562), Expect = 9e-58
Identities = 112/241 (46%), Positives = 161/241 (66%), Gaps = 1/241 (0%)
Frame = +3
Query: 273 PAYHKITPTLTDFALRLYKQLAAET-PGNIFFSPVSISSTLALLSLGAQADTPTQILEGL 449
PA H+I L DFA+ LY++L ++ NIFFSPVSI++ A+LSLG++ DT TQILEGL
Sbjct: 39 PASHEIATNLGDFAISLYRELVHQSNTSNIFFSPVSIATAFAMLSLGSKGDTHTQILEGL 98
Query: 450 GFNLTEIPEADIHRGFQSLIRTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGA 629
FNLT+ EADIH+ FQ L++TL P S+L++ GN LF++ LK + FL+ + Y A
Sbjct: 99 QFNLTQTSEADIHKSFQHLLQTLNRPDSELQLSTGNGLFVNNDLKLVEKFLEEAKNHYQA 158
Query: 630 LAFSANFTDSGTTRRQINDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNP 809
FS NF +S ++ IND++ K T G++ + +++ QDT+ L NYI FK KWK PF+P
Sbjct: 159 EVFSVNFAESEEAKKVINDFVEKGTQGKIAEAVKKLDQDTVFALANYILFKGKWKKPFDP 218
Query: 810 YQTQKQESFFVDERTSLRVPMMRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGK 989
T++ E F VDE T+++VPMM M + ++ VL ++Y+GNA A+ +LPD GK
Sbjct: 219 ENTEEAE-FHVDESTTVKVPMMTLSGMLHVHHCSTLSSWVLLMDYAGNATAVFLLPDDGK 277
Query: 990 M 992
M
Sbjct: 278 M 278
>ref|NP_033271.1| alpha-1-antitrypsin 1-3 [Mus musculus].
Length = 413
Score = 220 bits (560), Expect = 2e-57
Identities = 112/241 (46%), Positives = 161/241 (66%), Gaps = 1/241 (0%)
Frame = +3
Query: 273 PAYHKITPTLTDFALRLYKQLAAET-PGNIFFSPVSISSTLALLSLGAQADTPTQILEGL 449
PA H+I L DFA+ LY++L ++ NIFFSPVSI++ A+LSLG++ DT TQILEGL
Sbjct: 39 PASHEIATNLGDFAISLYRELVHQSNTSNIFFSPVSIATAFAMLSLGSKGDTHTQILEGL 98
Query: 450 GFNLTEIPEADIHRGFQSLIRTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGA 629
FNLT+ EADIH+ FQ L++TL P S+L++ GN LF++ LK + FL+ + Y A
Sbjct: 99 QFNLTQTSEADIHKSFQHLLQTLNRPDSELQLSTGNGLFVNNDLKLVEKFLEEAKNHYQA 158
Query: 630 LAFSANFTDSGTTRRQINDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNP 809
FS NF +S ++ IND++ K T G++ + +++ QDT+ L NYI FK KWK PF+P
Sbjct: 159 EVFSVNFAESEEAKKVINDFVEKGTQGKIAEAVKKLDQDTVFALANYILFKGKWKKPFDP 218
Query: 810 YQTQKQESFFVDERTSLRVPMMRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGK 989
T++ E F VDE T+++VPMM M + ++ VL ++Y+GNA A+ +LPD GK
Sbjct: 219 ENTEEAE-FHVDESTTVKVPMMTLSGMLDVHHCSTLSSWVLLMDYAGNATAVFLLPDDGK 277
Query: 990 M 992
M
Sbjct: 278 M 278
>ref|NP_033270.3| alpha-1-antitrypsin 1-2 precursor [Mus musculus].
Length = 413
Score = 219 bits (559), Expect = 2e-57
Identities = 112/241 (46%), Positives = 162/241 (67%), Gaps = 1/241 (0%)
Frame = +3
Query: 273 PAYHKITPTLTDFALRLYKQLAAET-PGNIFFSPVSISSTLALLSLGAQADTPTQILEGL 449
PA H+I L DFA+ LY++L ++ NIFFSPVSI++ A+LSLG++ DT TQILEGL
Sbjct: 39 PASHEIATNLGDFAISLYRELVHQSNTSNIFFSPVSIATAFAMLSLGSKGDTHTQILEGL 98
Query: 450 GFNLTEIPEADIHRGFQSLIRTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGA 629
FNLT+ EADIH+ FQ L++TL P S+L++ GN LF++ LK + FL+ + Y A
Sbjct: 99 QFNLTQTSEADIHKSFQHLLQTLNRPDSELQLSTGNGLFVNNDLKLVEKFLEEAKNHYQA 158
Query: 630 LAFSANFTDSGTTRRQINDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNP 809
FS NF +S ++ IND++ K T G++V+ ++E QDT+ L NYI FK KWK PF+P
Sbjct: 159 EVFSVNFAESEEAKKVINDFVEKGTQGKIVEAVKELDQDTVFALANYILFKGKWKKPFDP 218
Query: 810 YQTQKQESFFVDERTSLRVPMMRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGK 989
T++ E F VD+ T+++VPMM M + ++ VL ++Y+GNA A+ +LP+ GK
Sbjct: 219 ENTEEAE-FHVDKSTTVKVPMMMLSGMLDVHHCSILSSWVLLMDYAGNASAVFLLPEDGK 277
Query: 990 M 992
M
Sbjct: 278 M 278
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,210,632
Number of extensions: 1058432
Number of successful extensions: 4322
Number of sequences better than 1.0e-05: 81
Number of HSP's gapped: 4159
Number of HSP's successfully gapped: 81
Length of query: 333
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 231
Effective length of database: 12,553,887
Effective search space: 2899947897
Effective search space used: 2899947897
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012614
(1001 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073920.1| serpin A11 precursor [Homo sapiens]. 471 e-133
Alignment gi|NP_783866.2| serpin A9 isoform A [Homo sapiens]. 240 1e-63
Alignment gi|NP_006206.2| kallistatin precursor [Homo sapiens]. 240 2e-63
Alignment gi|NP_001002236.1| alpha-1-antitrypsin precursor [Homo sapiens]. 238 6e-63
Alignment gi|NP_001002235.1| alpha-1-antitrypsin precursor [Homo sapiens]. 238 6e-63
Alignment gi|NP_000286.3| alpha-1-antitrypsin precursor [Homo sapiens]. 238 6e-63
Alignment gi|NP_001121179.1| alpha-1-antitrypsin precursor [Homo sapiens]. 238 6e-63
Alignment gi|NP_001121178.1| alpha-1-antitrypsin precursor [Homo sapiens]. 238 6e-63
Alignment gi|NP_001121177.1| alpha-1-antitrypsin precursor [Homo sapiens]. 238 6e-63
Alignment gi|NP_001121176.1| alpha-1-antitrypsin precursor [Homo sapiens]. 238 6e-63
>ref|NP_001073920.1| serpin A11 precursor [Homo sapiens].
Length = 422
Score = 471 bits (1211), Expect = e-133
Identities = 230/287 (80%), Positives = 255/287 (88%)
Frame = +3
Query: 141 MGPARLWLLGAGILASVHCQPFPAHGSKSLGGPEAPGRQLSGARPAYHKITPTLTDFALR 320
MGPA LWLLG GILASVHCQP AHG KSL GP+ P QLS PAYH+ITPT+T+FALR
Sbjct: 1 MGPAWLWLLGTGILASVHCQPLLAHGDKSLQGPQPPRHQLSEPAPAYHRITPTITNFALR 60
Query: 321 LYKQLAAETPGNIFFSPVSISSTLALLSLGAQADTPTQILEGLGFNLTEIPEADIHRGFQ 500
LYK+LAA+ PGNIFFSPVSIS+TLALLSLGAQA+T ILEGLGFNLTE PEADIH+GF+
Sbjct: 61 LYKELAADAPGNIFFSPVSISTTLALLSLGAQANTSALILEGLGFNLTETPEADIHQGFR 120
Query: 501 SLIRTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGALAFSANFTDSGTTRRQI 680
SL+ TL LPS KLE+KVGNSLFLDK+LKP+QH+LD+I+E+YGA AFSANFTDS TT RQI
Sbjct: 121 SLLHTLALPSPKLELKVGNSLFLDKRLKPRQHYLDSIKELYGAFAFSANFTDSVTTGRQI 180
Query: 681 NDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNPYQTQKQESFFVDERTSL 860
NDYLR+QTYGQVVDCL EF+QDT MVL NYIFFKAKWKHPF+ YQTQKQESFFVDERTSL
Sbjct: 181 NDYLRRQTYGQVVDCLPEFSQDTFMVLANYIFFKAKWKHPFSRYQTQKQESFFVDERTSL 240
Query: 861 RVPMMRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGKMAQV 1001
+VPMM QKEMHRFLYD ++ACTVLQIEY GNA ALL+LPDPGKM QV
Sbjct: 241 QVPMMHQKEMHRFLYDQDLACTVLQIEYRGNALALLVLPDPGKMKQV 287
>ref|NP_783866.2| serpin A9 isoform A [Homo sapiens].
Length = 435
Score = 240 bits (613), Expect = 1e-63
Identities = 128/281 (45%), Positives = 184/281 (65%), Gaps = 1/281 (0%)
Frame = +3
Query: 162 LLGAGILASVHCQPFPAHGSKSLGGPEAPGRQLSGARPAYHKITPTLTDFALRLYKQLAA 341
L G+ A ++C PA+ P A R S ++ TDFA RLY++L
Sbjct: 27 LFAVGLCAPIYCVS-PANA------PSAYPRPSSTKSTPASQVYSLNTDFAFRLYRRLVL 79
Query: 342 ETPG-NIFFSPVSISSTLALLSLGAQADTPTQILEGLGFNLTEIPEADIHRGFQSLIRTL 518
ETP NIFFSPVS+S++LA+LSLGA + T TQIL+GLGFNLT PE+ IH+GFQ L+ +L
Sbjct: 80 ETPSQNIFFSPVSVSTSLAMLSLGAHSVTKTQILQGLGFNLTHTPESAIHQGFQHLVHSL 139
Query: 519 GLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGALAFSANFTDSGTTRRQINDYLRK 698
+PS L +K+G++LF+ K+L+ Q +FL N++ +Y A FS +F++ + +IN +++K
Sbjct: 140 TVPSKDLTLKMGSALFVKKELQLQANFLGNVKRLYEAEVFSTDFSNPSIAQARINSHVKK 199
Query: 699 QTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNPYQTQKQESFFVDERTSLRVPMMR 878
+T G+VVD ++ T MVL+N+IFFKAKW+ PF+P T+K F V E+ ++ VPMM
Sbjct: 200 KTQGKVVDIIQGLDLLTAMVLVNHIFFKAKWEKPFHPEYTRKNFPFLVGEQVTVHVPMMH 259
Query: 879 QKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGKMAQV 1001
QKE F D E+ C VLQ++Y G+A A +LP GKM Q+
Sbjct: 260 QKEQFAFGVDTELNCFVLQMDYKGDAVAFFVLPSKGKMRQL 300
>ref|NP_006206.2| kallistatin precursor [Homo sapiens].
Length = 427
Score = 240 bits (612), Expect = 2e-63
Identities = 133/284 (46%), Positives = 184/284 (64%), Gaps = 2/284 (0%)
Frame = +3
Query: 156 LWLLGAGILASVHCQPFPAHGSKSLGGPEAPGRQLSGARPAYHKITPTLTDFALRLYKQL 335
L LL G+LA H Q H +S +G KI P DFA R Y +
Sbjct: 7 LLLLLVGLLALSHGQLHVEHDGESCSNSSHQQILETGEGSPSLKIAPANADFAFRFYYLI 66
Query: 336 AAETPG-NIFFSPVSISSTLALLSLGAQADTPTQILEGLGFNLTEIPEADIHRGFQSLIR 512
A+ETPG NIFFSP+SIS+ A+LSLGA + + +QILEGLGFNLTE+ E+D+HRGFQ L+
Sbjct: 67 ASETPGKNIFFSPLSISAAYAMLSLGACSHSRSQILEGLGFNLTELSESDVHRGFQHLLH 126
Query: 513 TLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGALAFSANFTDSGTTRRQINDYL 692
TL LP LE +VG++LFL LK FL++ VY A F NF D+ T + IND++
Sbjct: 127 TLNLPGHGLETRVGSALFLSHNLKFLAKFLNDTMAVYEAKLFHTNFYDTVGTIQLINDHV 186
Query: 693 RKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNPYQTQKQESFFVDERTSLRVPM 872
+K+T G++VD + E +D LMVL+NYI+FKA W+ PF +T ++ F+VDE T++RVPM
Sbjct: 187 KKETRGKIVDLVSELKKDVLMVLVNYIYFKALWEKPFISSRTTPKD-FYVDENTTVRVPM 245
Query: 873 MRQ-KEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGKMAQV 1001
M Q +E H +L+D + C+VL+++Y G+A ILP+ GKM ++
Sbjct: 246 MLQDQEHHWYLHDRYLPCSVLRMDYKGDATVFFILPNQGKMREI 289
>ref|NP_001002236.1| alpha-1-antitrypsin precursor [Homo sapiens].
Length = 418
Score = 238 bits (607), Expect = 6e-63
Identities = 118/241 (48%), Positives = 170/241 (70%), Gaps = 1/241 (0%)
Frame = +3
Query: 273 PAYHKITPTLTDFALRLYKQLAAETPG-NIFFSPVSISSTLALLSLGAQADTPTQILEGL 449
P ++KITP L +FA LY+QLA ++ NIFFSPVSI++ A+LSLG +ADT +ILEGL
Sbjct: 45 PTFNKITPNLAEFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGL 104
Query: 450 GFNLTEIPEADIHRGFQSLIRTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGA 629
FNLTEIPEA IH GFQ L+RTL P S+L++ GN LFL + LK FL++++++Y +
Sbjct: 105 NFNLTEIPEAQIHEGFQELLRTLNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHS 164
Query: 630 LAFSANFTDSGTTRRQINDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNP 809
AF+ NF D+ ++QINDY+ K T G++VD ++E +DT+ L+NYIFFK KW+ PF
Sbjct: 165 EAFTVNFGDTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVNYIFFKGKWERPFEV 224
Query: 810 YQTQKQESFFVDERTSLRVPMMRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGK 989
T+ +E F VD+ T+++VPMM++ M + +++ VL ++Y GNA A+ LPD GK
Sbjct: 225 KDTE-EEDFHVDQVTTVKVPMMKRLGMFNIQHCKKLSSWVLLMKYLGNATAIFFLPDEGK 283
Query: 990 M 992
+
Sbjct: 284 L 284
>ref|NP_001002235.1| alpha-1-antitrypsin precursor [Homo sapiens].
Length = 418
Score = 238 bits (607), Expect = 6e-63
Identities = 118/241 (48%), Positives = 170/241 (70%), Gaps = 1/241 (0%)
Frame = +3
Query: 273 PAYHKITPTLTDFALRLYKQLAAETPG-NIFFSPVSISSTLALLSLGAQADTPTQILEGL 449
P ++KITP L +FA LY+QLA ++ NIFFSPVSI++ A+LSLG +ADT +ILEGL
Sbjct: 45 PTFNKITPNLAEFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGL 104
Query: 450 GFNLTEIPEADIHRGFQSLIRTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGA 629
FNLTEIPEA IH GFQ L+RTL P S+L++ GN LFL + LK FL++++++Y +
Sbjct: 105 NFNLTEIPEAQIHEGFQELLRTLNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHS 164
Query: 630 LAFSANFTDSGTTRRQINDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNP 809
AF+ NF D+ ++QINDY+ K T G++VD ++E +DT+ L+NYIFFK KW+ PF
Sbjct: 165 EAFTVNFGDTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVNYIFFKGKWERPFEV 224
Query: 810 YQTQKQESFFVDERTSLRVPMMRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGK 989
T+ +E F VD+ T+++VPMM++ M + +++ VL ++Y GNA A+ LPD GK
Sbjct: 225 KDTE-EEDFHVDQVTTVKVPMMKRLGMFNIQHCKKLSSWVLLMKYLGNATAIFFLPDEGK 283
Query: 990 M 992
+
Sbjct: 284 L 284
>ref|NP_000286.3| alpha-1-antitrypsin precursor [Homo sapiens].
Length = 418
Score = 238 bits (607), Expect = 6e-63
Identities = 118/241 (48%), Positives = 170/241 (70%), Gaps = 1/241 (0%)
Frame = +3
Query: 273 PAYHKITPTLTDFALRLYKQLAAETPG-NIFFSPVSISSTLALLSLGAQADTPTQILEGL 449
P ++KITP L +FA LY+QLA ++ NIFFSPVSI++ A+LSLG +ADT +ILEGL
Sbjct: 45 PTFNKITPNLAEFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGL 104
Query: 450 GFNLTEIPEADIHRGFQSLIRTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGA 629
FNLTEIPEA IH GFQ L+RTL P S+L++ GN LFL + LK FL++++++Y +
Sbjct: 105 NFNLTEIPEAQIHEGFQELLRTLNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHS 164
Query: 630 LAFSANFTDSGTTRRQINDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNP 809
AF+ NF D+ ++QINDY+ K T G++VD ++E +DT+ L+NYIFFK KW+ PF
Sbjct: 165 EAFTVNFGDTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVNYIFFKGKWERPFEV 224
Query: 810 YQTQKQESFFVDERTSLRVPMMRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGK 989
T+ +E F VD+ T+++VPMM++ M + +++ VL ++Y GNA A+ LPD GK
Sbjct: 225 KDTE-EEDFHVDQVTTVKVPMMKRLGMFNIQHCKKLSSWVLLMKYLGNATAIFFLPDEGK 283
Query: 990 M 992
+
Sbjct: 284 L 284
>ref|NP_001121179.1| alpha-1-antitrypsin precursor [Homo sapiens].
Length = 418
Score = 238 bits (607), Expect = 6e-63
Identities = 118/241 (48%), Positives = 170/241 (70%), Gaps = 1/241 (0%)
Frame = +3
Query: 273 PAYHKITPTLTDFALRLYKQLAAETPG-NIFFSPVSISSTLALLSLGAQADTPTQILEGL 449
P ++KITP L +FA LY+QLA ++ NIFFSPVSI++ A+LSLG +ADT +ILEGL
Sbjct: 45 PTFNKITPNLAEFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGL 104
Query: 450 GFNLTEIPEADIHRGFQSLIRTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGA 629
FNLTEIPEA IH GFQ L+RTL P S+L++ GN LFL + LK FL++++++Y +
Sbjct: 105 NFNLTEIPEAQIHEGFQELLRTLNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHS 164
Query: 630 LAFSANFTDSGTTRRQINDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNP 809
AF+ NF D+ ++QINDY+ K T G++VD ++E +DT+ L+NYIFFK KW+ PF
Sbjct: 165 EAFTVNFGDTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVNYIFFKGKWERPFEV 224
Query: 810 YQTQKQESFFVDERTSLRVPMMRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGK 989
T+ +E F VD+ T+++VPMM++ M + +++ VL ++Y GNA A+ LPD GK
Sbjct: 225 KDTE-EEDFHVDQVTTVKVPMMKRLGMFNIQHCKKLSSWVLLMKYLGNATAIFFLPDEGK 283
Query: 990 M 992
+
Sbjct: 284 L 284
>ref|NP_001121178.1| alpha-1-antitrypsin precursor [Homo sapiens].
Length = 418
Score = 238 bits (607), Expect = 6e-63
Identities = 118/241 (48%), Positives = 170/241 (70%), Gaps = 1/241 (0%)
Frame = +3
Query: 273 PAYHKITPTLTDFALRLYKQLAAETPG-NIFFSPVSISSTLALLSLGAQADTPTQILEGL 449
P ++KITP L +FA LY+QLA ++ NIFFSPVSI++ A+LSLG +ADT +ILEGL
Sbjct: 45 PTFNKITPNLAEFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGL 104
Query: 450 GFNLTEIPEADIHRGFQSLIRTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGA 629
FNLTEIPEA IH GFQ L+RTL P S+L++ GN LFL + LK FL++++++Y +
Sbjct: 105 NFNLTEIPEAQIHEGFQELLRTLNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHS 164
Query: 630 LAFSANFTDSGTTRRQINDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNP 809
AF+ NF D+ ++QINDY+ K T G++VD ++E +DT+ L+NYIFFK KW+ PF
Sbjct: 165 EAFTVNFGDTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVNYIFFKGKWERPFEV 224
Query: 810 YQTQKQESFFVDERTSLRVPMMRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGK 989
T+ +E F VD+ T+++VPMM++ M + +++ VL ++Y GNA A+ LPD GK
Sbjct: 225 KDTE-EEDFHVDQVTTVKVPMMKRLGMFNIQHCKKLSSWVLLMKYLGNATAIFFLPDEGK 283
Query: 990 M 992
+
Sbjct: 284 L 284
>ref|NP_001121177.1| alpha-1-antitrypsin precursor [Homo sapiens].
Length = 418
Score = 238 bits (607), Expect = 6e-63
Identities = 118/241 (48%), Positives = 170/241 (70%), Gaps = 1/241 (0%)
Frame = +3
Query: 273 PAYHKITPTLTDFALRLYKQLAAETPG-NIFFSPVSISSTLALLSLGAQADTPTQILEGL 449
P ++KITP L +FA LY+QLA ++ NIFFSPVSI++ A+LSLG +ADT +ILEGL
Sbjct: 45 PTFNKITPNLAEFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGL 104
Query: 450 GFNLTEIPEADIHRGFQSLIRTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGA 629
FNLTEIPEA IH GFQ L+RTL P S+L++ GN LFL + LK FL++++++Y +
Sbjct: 105 NFNLTEIPEAQIHEGFQELLRTLNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHS 164
Query: 630 LAFSANFTDSGTTRRQINDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNP 809
AF+ NF D+ ++QINDY+ K T G++VD ++E +DT+ L+NYIFFK KW+ PF
Sbjct: 165 EAFTVNFGDTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVNYIFFKGKWERPFEV 224
Query: 810 YQTQKQESFFVDERTSLRVPMMRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGK 989
T+ +E F VD+ T+++VPMM++ M + +++ VL ++Y GNA A+ LPD GK
Sbjct: 225 KDTE-EEDFHVDQVTTVKVPMMKRLGMFNIQHCKKLSSWVLLMKYLGNATAIFFLPDEGK 283
Query: 990 M 992
+
Sbjct: 284 L 284
>ref|NP_001121176.1| alpha-1-antitrypsin precursor [Homo sapiens].
Length = 418
Score = 238 bits (607), Expect = 6e-63
Identities = 118/241 (48%), Positives = 170/241 (70%), Gaps = 1/241 (0%)
Frame = +3
Query: 273 PAYHKITPTLTDFALRLYKQLAAETPG-NIFFSPVSISSTLALLSLGAQADTPTQILEGL 449
P ++KITP L +FA LY+QLA ++ NIFFSPVSI++ A+LSLG +ADT +ILEGL
Sbjct: 45 PTFNKITPNLAEFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGL 104
Query: 450 GFNLTEIPEADIHRGFQSLIRTLGLPSSKLEMKVGNSLFLDKQLKPQQHFLDNIREVYGA 629
FNLTEIPEA IH GFQ L+RTL P S+L++ GN LFL + LK FL++++++Y +
Sbjct: 105 NFNLTEIPEAQIHEGFQELLRTLNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHS 164
Query: 630 LAFSANFTDSGTTRRQINDYLRKQTYGQVVDCLEEFAQDTLMVLLNYIFFKAKWKHPFNP 809
AF+ NF D+ ++QINDY+ K T G++VD ++E +DT+ L+NYIFFK KW+ PF
Sbjct: 165 EAFTVNFGDTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVNYIFFKGKWERPFEV 224
Query: 810 YQTQKQESFFVDERTSLRVPMMRQKEMHRFLYDHEVACTVLQIEYSGNAQALLILPDPGK 989
T+ +E F VD+ T+++VPMM++ M + +++ VL ++Y GNA A+ LPD GK
Sbjct: 225 KDTE-EEDFHVDQVTTVKVPMMKRLGMFNIQHCKKLSSWVLLMKYLGNATAIFFLPDEGK 283
Query: 990 M 992
+
Sbjct: 284 L 284
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,990,022
Number of extensions: 1296866
Number of successful extensions: 5399
Number of sequences better than 1.0e-05: 60
Number of HSP's gapped: 5266
Number of HSP's successfully gapped: 60
Length of query: 333
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 230
Effective length of database: 14,901,872
Effective search space: 3427430560
Effective search space used: 3427430560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012614
(1001 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 1231 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 1231 bits (621), Expect = 0.0
Identities = 638/646 (98%)
Strand = Plus / Minus
Query: 138 aggatggggccagcgcggctgtggctgctgggagcagggatcctggcctctgtccactgt 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 122657848 aggatggggccagcgcggctgtggctgctgggagcagggatcctggcctctgtccaccgt 122657789
Query: 198 cagccctttcctgcccatggatctaagagtctnnnnnnncctgaagcccctggccgtcag 257
|||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 122657788 cagccctttcctgcccatggatctaagagtctgggggggcctgaagcccctggccgtcag 122657729
Query: 258 ctctcaggggcccgccccgcctaccacaaaatcacacccaccctcaccgacttcgctttg 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122657728 ctctcaggggcccgccccgcctaccacaaaatcacacccaccctcaccgacttcgctttg 122657669
Query: 318 cgtttgtataagcagctggccgccgaaaccccaggaaacatcttcttctccccagtgagc 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122657668 cgtttgtataagcagctggccgccgaaaccccaggaaacatcttcttctccccagtgagc 122657609
Query: 378 atctcctccaccctggccctgctctccctgggggcgcaggccgacaccccgacgcagatc 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122657608 atctcctccaccctggccctgctctccctgggggcgcaggccgacaccccgacgcagatc 122657549
Query: 438 ctggagggcctcggcttcaacctcacggagatcccagaagccgacatccaccggggcttt 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122657548 ctggagggcctcggcttcaacctcacggagatcccagaagccgacatccaccggggcttt 122657489
Query: 498 cagagcctcatccgcacccttggcctgcccagctctaaacttgaaatgaaagtaggcaac 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122657488 cagagcctcatccgcacccttggcctgcccagctctaaacttgaaatgaaagtaggcaac 122657429
Query: 558 tccttgttcctggacaagcagctaaagcctcagcagcactttttggacaacatcagggag 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122657428 tccttgttcctggacaagcagctaaagcctcagcagcactttttggacaacatcagggag 122657369
Query: 618 gtgtatggggctttggctttttctgccaacttcacggactctggaacaactaggaggcag 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122657368 gtgtatggggctttggctttttctgccaacttcacggactctggaacaactaggaggcag 122657309
Query: 678 attaatgactacctgagaaagcaaacctacgggcaggtggtggactgcctggaggagttc 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122657308 attaatgactacctgagaaagcaaacctacgggcaggtggtggactgcctggaggagttc 122657249
Query: 738 gcccaagacacgctcatggttctcttgaattatatcttcttcaaag 783
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122657248 gcccaagacacgctcatggttctcttgaattatatcttcttcaaag 122657203
Score = 1187 bits (599), Expect = 0.0
Identities = 633/646 (97%), Gaps = 3/646 (0%)
Strand = Plus / Minus
Query: 138 aggatggggccagcgcggctgtggctgctgggagcagggatcctggcctctgtccactgt 197
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 122797292 aggatggggccagcgcggctgtggctgctgggagcagggatcctggcctctgtcca---t 122797236
Query: 198 cagccctttcctgcccatggatctaagagtctnnnnnnncctgaagcccctggccgtcag 257
|||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 122797235 cagccctttcctgcccatggatctaagagtctgggggtgcctgaagcccctggccgtcag 122797176
Query: 258 ctctcaggggcccgccccgcctaccacaaaatcacacccaccctcaccgacttcgctttg 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122797175 ctctcaggggcccgccccgcctaccacaaaatcacacccaccctcaccgacttcgctttg 122797116
Query: 318 cgtttgtataagcagctggccgccgaaaccccaggaaacatcttcttctccccagtgagc 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122797115 cgtttgtataagcagctggccgccgaaaccccaggaaacatcttcttctccccagtgagc 122797056
Query: 378 atctcctccaccctggccctgctctccctgggggcgcaggccgacaccccgacgcagatc 437
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 122797055 atctcctccaccctggccctgctctccctgggggcacaggccgacaccccgacgcagatc 122796996
Query: 438 ctggagggcctcggcttcaacctcacggagatcccagaagccgacatccaccggggcttt 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122796995 ctggagggcctcggcttcaacctcacggagatcccagaagccgacatccaccggggcttt 122796936
Query: 498 cagagcctcatccgcacccttggcctgcccagctctaaacttgaaatgaaagtaggcaac 557
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 122796935 cagagcctcatccgcacccttgacctgcccagctctaaacttgaaatgaaagtaggcaac 122796876
Query: 558 tccttgttcctggacaagcagctaaagcctcagcagcactttttggacaacatcagggag 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122796875 tccttgttcctggacaagcagctaaagcctcagcagcactttttggacaacatcagggag 122796816
Query: 618 gtgtatggggctttggctttttctgccaacttcacggactctggaacaactaggaggcag 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122796815 gtgtatggggctttggctttttctgccaacttcacggactctggaacaactaggaggcag 122796756
Query: 678 attaatgactacctgagaaagcaaacctacgggcaggtggtggactgcctggaggagttc 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122796755 attaatgactacctgagaaagcaaacctacgggcaggtggtggactgcctggaggagttc 122796696
Query: 738 gcccaagacacgctcatggttctcttgaattatatcttcttcaaag 783
|||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 122796695 gcccaagacacgcttatggttctcttgaattatatcttcttcaaag 122796650
Score = 438 bits (221), Expect = e-120
Identities = 221/221 (100%)
Strand = Plus / Minus
Query: 781 aagccaagtggaagcatcctttcaatccctaccagacccagaagcaagagagcttctttg 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122652966 aagccaagtggaagcatcctttcaatccctaccagacccagaagcaagagagcttctttg 122652907
Query: 841 tggatgagcggacctctctccgagtccccatgatgcgccaaaaggaaatgcacagattcc 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122652906 tggatgagcggacctctctccgagtccccatgatgcgccaaaaggaaatgcacagattcc 122652847
Query: 901 tctacgaccatgaggtggcctgcaccgtcctccagatagaatacagtggaaacgcccagg 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122652846 tctacgaccatgaggtggcctgcaccgtcctccagatagaatacagtggaaacgcccagg 122652787
Query: 961 ccttgctcatcctccctgaccccgggaaaatggcacaggta 1001
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 122652786 ccttgctcatcctccctgaccccgggaaaatggcacaggta 122652746
Score = 438 bits (221), Expect = e-120
Identities = 221/221 (100%)
Strand = Plus / Minus
Query: 781 aagccaagtggaagcatcctttcaatccctaccagacccagaagcaagagagcttctttg 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122791671 aagccaagtggaagcatcctttcaatccctaccagacccagaagcaagagagcttctttg 122791612
Query: 841 tggatgagcggacctctctccgagtccccatgatgcgccaaaaggaaatgcacagattcc 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122791611 tggatgagcggacctctctccgagtccccatgatgcgccaaaaggaaatgcacagattcc 122791552
Query: 901 tctacgaccatgaggtggcctgcaccgtcctccagatagaatacagtggaaacgcccagg 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122791551 tctacgaccatgaggtggcctgcaccgtcctccagatagaatacagtggaaacgcccagg 122791492
Query: 961 ccttgctcatcctccctgaccccgggaaaatggcacaggta 1001
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 122791491 ccttgctcatcctccctgaccccgggaaaatggcacaggta 122791451
Score = 262 bits (132), Expect = 3e-67
Identities = 135/136 (99%)
Strand = Plus / Minus
Query: 2 cattgtcttcagaccggttccaggaattgacctgacaaatattgacgaggctgcctcgat 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122684946 cattgtcttcagaccggttccaggaattgacctgacaaatattgacgaggctgcctcgat 122684887
Query: 62 catcaaacactattttcctgtgggtaagaggcgacgcggtcctgaagacccagggcccca 121
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 122684886 catcaaacactattttcctgtgggtaagaggcgacgtggtcctgaagacccagggcccca 122684827
Query: 122 gcccagggaccttgct 137
||||||||||||||||
Sbjct: 122684826 gcccagggaccttgct 122684811
Score = 262 bits (132), Expect = 3e-67
Identities = 135/136 (99%)
Strand = Plus / Minus
Query: 2 cattgtcttcagaccggttccaggaattgacctgacaaatattgacgaggctgcctcgat 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 122800679 cattgtcttcagaccggttccaggaattgacctgacaaatattgacgaggctgccgcgat 122800620
Query: 62 catcaaacactattttcctgtgggtaagaggcgacgcggtcctgaagacccagggcccca 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122800619 catcaaacactattttcctgtgggtaagaggcgacgcggtcctgaagacccagggcccca 122800560
Query: 122 gcccagggaccttgct 137
||||||||||||||||
Sbjct: 122800559 gcccagggaccttgct 122800544
Score = 58.0 bits (29), Expect = 1e-05
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 360 ttcttctccccagtgagcatctcctccaccctggccctgctctccctgggggcgcaggcc 419
||||||||||| ||||||||||| | ||||||| |||||||||||||||| ||| ||
Sbjct: 122922561 ttcttctcccctctgagcatctccatgagcctggccatgctctccctgggggctcagtcc 122922620
Query: 420 gacaccccgacgcagatcctggagggcct 448
|||| | | |||||||||||||||||
Sbjct: 122922621 agcaccaaggcacagatcctggagggcct 122922649
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,028,033
Number of extensions: 230
Number of successful extensions: 230
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 7
Length of query: 1001
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 980
Effective length of database: 2,808,413,156
Effective search space: 2752244892880
Effective search space used: 2752244892880
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)