Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012671
(1077 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776683.1| non-muscle caldesmon [Bos taurus]. 168 7e-42
>ref|NP_776683.1| non-muscle caldesmon [Bos taurus].
Length = 535
Score = 168 bits (426), Expect = 7e-42
Identities = 103/234 (44%), Positives = 128/234 (54%), Gaps = 3/234 (1%)
Frame = +3
Query: 294 QIAYQRNDDDXXXXXXXXXXXXXXXXXXXXXXXXSLGQVTDQVEVNTQNSVPDEQVKTTT 473
+IAYQRNDDD +LGQVTDQVEVNTQNSVPDE+VKTTT
Sbjct: 24 RIAYQRNDDDEEEAARERRRRARQERLRQKQEEEALGQVTDQVEVNTQNSVPDEEVKTTT 83
Query: 474 TNTQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFDPTIADASSSPPSRRMQNSTAE 653
TNTQ KEFDPTI DAS S SRRMQN T +
Sbjct: 84 TNTQAEGDDEAALLERLARREERRQKRLQEALERQKEFDPTITDASLSLSSRRMQNDTTD 143
Query: 654 DETAEKDEKSESRQERYEIEETEVVTKSYQKNDWRDAEEQXXXXXXXXXXXXXXPNQGSI 833
+ETAEK+ +SESRQER E+EETE+VTKS+QKNDW +AEE+ P GSI
Sbjct: 144 NETAEKEGRSESRQERQELEETEIVTKSHQKNDWMEAEEKKKEEKEKEEEEEEKPKPGSI 203
Query: 834 EENQVEMVVEEKTAETQEETGMALKNGQISADEPRTEEEREKG---SHEMPHNE 986
EENQ++ +EKT + +E + + A + TE + + G +H++ H E
Sbjct: 204 EENQLK---DEKTKKDKESKDV---KRFLDAKKGFTEVKSQNGEFMTHKLKHAE 251
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,883,898
Number of extensions: 1030666
Number of successful extensions: 6387
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6284
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 256
Effective length of database: 14,273,310
Effective search space: 3653967360
Effective search space used: 3653967360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-012671
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012671
(1077 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_859880.1| PREDICTED: similar to Non-muscle caldesmon (CDM... 112 6e-25
Alignment gi|XP_849832.1| PREDICTED: similar to Non-muscle caldesmon (CDM... 111 1e-24
>ref|XP_859880.1| PREDICTED: similar to Non-muscle caldesmon (CDM) (L-caldesmon)
isoform 2 [Canis familiaris].
Length = 568
Score = 112 bits (280), Expect = 6e-25
Identities = 83/237 (35%), Positives = 108/237 (45%), Gaps = 4/237 (1%)
Frame = +3
Query: 294 QIAYQRNDDDXXXXXXXXXXXXXXXXXXXXXXXXSLGQVTDQVEVNTQNSVPDEQVKTTT 473
+IAYQRNDDD SLGQVTDQVEVN QNSV DE+ K+
Sbjct: 24 RIAYQRNDDDEEEAARERRRRARQERLRQKQEEESLGQVTDQVEVNAQNSVADEEGKSGA 83
Query: 474 TNTQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFDPTIA--DASSSPPSRRMQNST 647
T + +E DPT+ DAS+SP SRR+QN+
Sbjct: 84 TPAPVEGDDEAALLERLARREERRQKRLQEALERQRELDPTVTVTDASASPASRRLQNNA 143
Query: 648 AEDETAEKDEKSESRQERYEIEETEVVTKSYQKNDWRDAEEQXXXXXXXXXXXXXXPNQG 827
A E AEK+EKSE QE Y I +V TK QKND RD EE+ Q
Sbjct: 144 APGEAAEKEEKSEPGQEGYAIAGPQVATKPQQKNDCRDTEEK---------------QQE 188
Query: 828 SIEENQVEMVVEEKTAE--TQEETGMALKNGQISADEPRTEEEREKGSHEMPHNEKI 992
EE + E EE+ A+ ++EE K + A +++E++ E+ +EKI
Sbjct: 189 EEEEGKAEEEEEEEKAKPGSREENQEEEKGAKAQAQREKSQEDKPAFKKEI-KDEKI 244
>ref|XP_849832.1| PREDICTED: similar to Non-muscle caldesmon (CDM) (L-caldesmon)
isoform 1 [Canis familiaris].
Length = 543
Score = 111 bits (277), Expect = 1e-24
Identities = 82/237 (34%), Positives = 108/237 (45%), Gaps = 6/237 (2%)
Frame = +3
Query: 294 QIAYQRNDDDXXXXXXXXXXXXXXXXXXXXXXXXSLGQVTDQVEVNTQNSVPDEQVKTTT 473
+IAYQRNDDD SLGQVTDQVEVN QNSV DE+ K+
Sbjct: 24 RIAYQRNDDDEEEAARERRRRARQERLRQKQEEESLGQVTDQVEVNAQNSVADEEGKSGA 83
Query: 474 TNTQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFDPTIA--DASSSPPSRRMQNST 647
T + +E DPT+ DAS+SP SRR+QN+
Sbjct: 84 TPAPVEGDDEAALLERLARREERRQKRLQEALERQRELDPTVTVTDASASPASRRLQNNA 143
Query: 648 AEDETAEKDEKSESRQERYEIEETEVVTKSYQKNDWRDAEEQXXXXXXXXXXXXXXPNQ- 824
A E AEK+EKSE QE Y I +V TK QKND RD EE+ +
Sbjct: 144 APGEAAEKEEKSEPGQEGYAIAGPQVATKPQQKNDCRDTEEKQQEEEEEGKAEEEEEEEK 203
Query: 825 ---GSIEENQVEMVVEEKTAETQEETGMALKNGQISADEPRTEEEREKGSHEMPHNE 986
GS EENQ++ +K E +E + +G+ E ++ + E +H++ H E
Sbjct: 204 AKPGSREENQIKDEKIKKDKEPKEV--KSFLDGKKGFPEAKS-QNGEFMTHKLKHTE 257
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,376,385
Number of extensions: 1036412
Number of successful extensions: 7283
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6983
Number of HSP's successfully gapped: 2
Length of query: 359
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 255
Effective length of database: 15,407,560
Effective search space: 3928927800
Effective search space used: 3928927800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012671
(1077 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134701.1| PREDICTED: caldesmon [Sus scrofa]. 425 e-119
>ref|XP_003134701.1| PREDICTED: caldesmon [Sus scrofa].
Length = 871
Score = 425 bits (1093), Expect = e-119
Identities = 230/326 (70%), Positives = 230/326 (70%)
Frame = +3
Query: 15 MPRERVGRSRFGKGQAQTFVTGTDQSVNTKGEPGSILHTAFQPQIPWHLLGPSPRPEXXX 194
MPRERVGRSRFGKGQAQTFVTGTDQSVNTKGEPGSILHTAFQPQIPWHLLGPSPRPE
Sbjct: 1 MPRERVGRSRFGKGQAQTFVTGTDQSVNTKGEPGSILHTAFQPQIPWHLLGPSPRPERPR 60
Query: 195 XXXXXXXXXXXXXXXDMLXXXXXXXXXXLAALSQIAYQRNDDDXXXXXXXXXXXXXXXXX 374
DML LAALSQIAYQRNDDD
Sbjct: 61 VSAPLRSPPPPLPAADMLGGSGSQGRRSLAALSQIAYQRNDDDEEEAARERRRRARQERL 120
Query: 375 XXXXXXXSLGQVTDQVEVNTQNSVPDEQVKTTTTNTQMXXXXXXXXXXXXXXXXXXXXXX 554
SLGQVTDQVEVNTQNSVPDEQVKTTTTNTQM
Sbjct: 121 RQKQEEESLGQVTDQVEVNTQNSVPDEQVKTTTTNTQMEADDEAALLERLARREERRQKR 180
Query: 555 XXXXXXXXKEFDPTIADASSSPPSRRMQNSTAEDETAEKDEKSESRQERYEIEETEVVTK 734
KEFDPTIADASSSPPSRRMQNSTAEDETAEKDEKSESRQERYEIEETEVVTK
Sbjct: 181 LQEALERQKEFDPTIADASSSPPSRRMQNSTAEDETAEKDEKSESRQERYEIEETEVVTK 240
Query: 735 SYQKNDWRDAEEQXXXXXXXXXXXXXXPNQGSIEENQVEMVVEEKTAETQEETGMALKNG 914
SYQKNDWRDAEEQ PNQGSIEENQVEMVVEEKTAETQEETGMALKNG
Sbjct: 241 SYQKNDWRDAEEQKKEEKEKEEEEEEKPNQGSIEENQVEMVVEEKTAETQEETGMALKNG 300
Query: 915 QISADEPRTEEEREKGSHEMPHNEKI 992
QISADEPRTEEEREKGSHEMPHNEKI
Sbjct: 301 QISADEPRTEEEREKGSHEMPHNEKI 326
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,535,311
Number of extensions: 717849
Number of successful extensions: 4176
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4109
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 259
Effective length of database: 8,854,232
Effective search space: 2293246088
Effective search space used: 2293246088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012671
(1077 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_663550.1| caldesmon 1 [Mus musculus]. 147 1e-35
>ref|NP_663550.1| caldesmon 1 [Mus musculus].
Length = 530
Score = 147 bits (372), Expect = 1e-35
Identities = 90/204 (44%), Positives = 108/204 (52%)
Frame = +3
Query: 279 LAALSQIAYQRNDDDXXXXXXXXXXXXXXXXXXXXXXXXSLGQVTDQVEVNTQNSVPDEQ 458
LA LSQIAYQRNDDD SLGQVTDQVE + QNSVPDE+
Sbjct: 13 LATLSQIAYQRNDDDEEEAARERRRRARQERLRQKQEEESLGQVTDQVEAHVQNSVPDEE 72
Query: 459 VKTTTTNTQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFDPTIADASSSPPSRRMQ 638
K ++NTQ+ KEFDPTI D S S PSRRMQ
Sbjct: 73 SKPASSNTQVEGDEEAALLERLARREERRQKRLQEALERQKEFDPTITDGSLSGPSRRMQ 132
Query: 639 NSTAEDETAEKDEKSESRQERYEIEETEVVTKSYQKNDWRDAEEQXXXXXXXXXXXXXXP 818
N +AE+ETAE +EK ESR RYE+EETEVV KSYQKN ++DAE++
Sbjct: 133 NDSAENETAEGEEKRESRSGRYEVEETEVVIKSYQKNSYQDAEDKKKEEKEEEEQEKL-- 190
Query: 819 NQGSIEENQVEMVVEEKTAETQEE 890
GS+ ENQ++ +K E +EE
Sbjct: 191 KGGSLGENQIKDEKIKKDKEPKEE 214
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,616,096
Number of extensions: 816860
Number of successful extensions: 5356
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5039
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 256
Effective length of database: 12,523,851
Effective search space: 3206105856
Effective search space used: 3206105856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012671
(1077 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_149129.2| caldesmon isoform 1 [Homo sapiens]. 238 9e-63
Alignment gi|NP_149131.1| caldesmon isoform 5 [Homo sapiens]. 191 1e-48
Alignment gi|NP_149130.1| caldesmon isoform 4 [Homo sapiens]. 189 3e-48
Alignment gi|NP_004333.1| caldesmon isoform 2 [Homo sapiens]. 182 6e-46
Alignment gi|NP_149347.2| caldesmon isoform 3 [Homo sapiens]. 180 2e-45
>ref|NP_149129.2| caldesmon isoform 1 [Homo sapiens].
Length = 793
Score = 238 bits (606), Expect = 9e-63
Identities = 132/234 (56%), Positives = 149/234 (63%), Gaps = 1/234 (0%)
Frame = +3
Query: 294 QIAYQRNDDDXXXXXXXXXXXXXXXXXXXXXXXXSLGQVTDQVEVNTQNSVPDEQVKTTT 473
+IAYQRNDDD SLGQVTDQVEVN QNSVPDE+ KTTT
Sbjct: 24 RIAYQRNDDDEEEAARERRRRARQERLRQKQEEESLGQVTDQVEVNAQNSVPDEEAKTTT 83
Query: 474 TNTQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFDPTIADASSSPPSRRMQNSTAE 653
TNTQ+ KEFDPTI DAS S PSRRMQN TAE
Sbjct: 84 TNTQVEGDDEAAFLERLARREERRQKRLQEALERQKEFDPTITDASLSLPSRRMQNDTAE 143
Query: 654 DETAEKDEKSESRQERYEIEETEVVTKSYQKNDWRDAEEQXXXXXXXXXXXXXXPNQGSI 833
+ET EK+EKSESRQERYEIEETE VTKSYQKNDWRDAEE P +GSI
Sbjct: 144 NETTEKEEKSESRQERYEIEETETVTKSYQKNDWRDAEENKKEDKEKEEEEEEKPKRGSI 203
Query: 834 EENQVEMVVEEKTAETQEET-GMALKNGQISADEPRTEEEREKGSHEMPHNEKI 992
ENQVE++VEEKT E+QEET M+LKNGQIS++EP+ EEERE+GS E+ H+EK+
Sbjct: 204 GENQVEVMVEEKTTESQEETVVMSLKNGQISSEEPKQEEEREQGSDEISHHEKM 257
>ref|NP_149131.1| caldesmon isoform 5 [Homo sapiens].
Length = 532
Score = 191 bits (485), Expect = 1e-48
Identities = 116/241 (48%), Positives = 134/241 (55%), Gaps = 5/241 (2%)
Frame = +3
Query: 279 LAALSQIAYQRNDDDXXXXXXXXXXXXXXXXXXXXXXXXSLGQVTDQVEVNTQNSVPDEQ 458
LAALSQIAYQRNDDD SLGQVTDQVEVN QNSVPDE+
Sbjct: 13 LAALSQIAYQRNDDDEEEAARERRRRARQERLRQKQEEESLGQVTDQVEVNAQNSVPDEE 72
Query: 459 VKTTTTNTQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFDPTIADASSSPPSRRMQ 638
KTTTTNTQ+ KEFDPTI DAS S PSRRMQ
Sbjct: 73 AKTTTTNTQVEGDDEAAFLERLARREERRQKRLQEALERQKEFDPTITDASLSLPSRRMQ 132
Query: 639 NSTAEDETAEKDEKSESRQERYEIEETEVVTKSYQKNDWRDAEEQXXXXXXXXXXXXXXP 818
N TAE+ET EK+EKSESRQERYEIEETE VTKSYQKNDWRDAEE P
Sbjct: 133 NDTAENETTEKEEKSESRQERYEIEETETVTKSYQKNDWRDAEENKKEDKEKEEEEEEKP 192
Query: 819 NQGSIEENQV--EMVVEEKTAETQEETGMALKNGQISADEPRTEEEREKG---SHEMPHN 983
+GSI ENQ+ E + ++K + + ++ M K G TE + + G +H++ H
Sbjct: 193 KRGSIGENQIKDEKIKKDKEPKEEVKSFMDRKKG-------FTEVKSQNGEFMTHKLKHT 245
Query: 984 E 986
E
Sbjct: 246 E 246
>ref|NP_149130.1| caldesmon isoform 4 [Homo sapiens].
Length = 558
Score = 189 bits (481), Expect = 3e-48
Identities = 119/244 (48%), Positives = 134/244 (54%), Gaps = 12/244 (4%)
Frame = +3
Query: 279 LAALSQIAYQRNDDDXXXXXXXXXXXXXXXXXXXXXXXXSLGQVTDQVEVNTQNSVPDEQ 458
LAALSQIAYQRNDDD SLGQVTDQVEVN QNSVPDE+
Sbjct: 13 LAALSQIAYQRNDDDEEEAARERRRRARQERLRQKQEEESLGQVTDQVEVNAQNSVPDEE 72
Query: 459 VKTTTTNTQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFDPTIADASSSPPSRRMQ 638
KTTTTNTQ+ KEFDPTI DAS S PSRRMQ
Sbjct: 73 AKTTTTNTQVEGDDEAAFLERLARREERRQKRLQEALERQKEFDPTITDASLSLPSRRMQ 132
Query: 639 NSTAEDETAEKDEKSESRQERYEIEETEVVTKSYQKNDWRDAEEQXXXXXXXXXXXXXXP 818
N TAE+ET EK+EKSESRQERYEIEETE VTKSYQKNDWRDAEE P
Sbjct: 133 NDTAENETTEKEEKSESRQERYEIEETETVTKSYQKNDWRDAEENKKEDKEKEEEEEEKP 192
Query: 819 NQGSIEENQVE---MVVEEKTAETQEETGM----ALKNGQISADEPRTEE-----EREKG 962
+GSI ENQ E V+ K + QE+ +K+ +I D+ EE +R+KG
Sbjct: 193 KRGSIGENQGEEKGTKVQAKREKLQEDKPTFKKEEIKDEKIKKDKEPKEEVKSFMDRKKG 252
Query: 963 SHEM 974
E+
Sbjct: 253 FTEV 256
>ref|NP_004333.1| caldesmon isoform 2 [Homo sapiens].
Length = 538
Score = 182 bits (461), Expect = 6e-46
Identities = 110/236 (46%), Positives = 129/236 (54%), Gaps = 5/236 (2%)
Frame = +3
Query: 294 QIAYQRNDDDXXXXXXXXXXXXXXXXXXXXXXXXSLGQVTDQVEVNTQNSVPDEQVKTTT 473
+IAYQRNDDD SLGQVTDQVEVN QNSVPDE+ KTTT
Sbjct: 24 RIAYQRNDDDEEEAARERRRRARQERLRQKQEEESLGQVTDQVEVNAQNSVPDEEAKTTT 83
Query: 474 TNTQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFDPTIADASSSPPSRRMQNSTAE 653
TNTQ+ KEFDPTI DAS S PSRRMQN TAE
Sbjct: 84 TNTQVEGDDEAAFLERLARREERRQKRLQEALERQKEFDPTITDASLSLPSRRMQNDTAE 143
Query: 654 DETAEKDEKSESRQERYEIEETEVVTKSYQKNDWRDAEEQXXXXXXXXXXXXXXPNQGSI 833
+ET EK+EKSESRQERYEIEETE VTKSYQKNDWRDAEE P +GSI
Sbjct: 144 NETTEKEEKSESRQERYEIEETETVTKSYQKNDWRDAEENKKEDKEKEEEEEEKPKRGSI 203
Query: 834 EENQV--EMVVEEKTAETQEETGMALKNGQISADEPRTEEEREKG---SHEMPHNE 986
ENQ+ E + ++K + + ++ M K G TE + + G +H++ H E
Sbjct: 204 GENQIKDEKIKKDKEPKEEVKSFMDRKKG-------FTEVKSQNGEFMTHKLKHTE 252
>ref|NP_149347.2| caldesmon isoform 3 [Homo sapiens].
Length = 563
Score = 180 bits (457), Expect = 2e-45
Identities = 113/239 (47%), Positives = 129/239 (53%), Gaps = 12/239 (5%)
Frame = +3
Query: 294 QIAYQRNDDDXXXXXXXXXXXXXXXXXXXXXXXXSLGQVTDQVEVNTQNSVPDEQVKTTT 473
+IAYQRNDDD SLGQVTDQVEVN QNSVPDE+ KTTT
Sbjct: 24 RIAYQRNDDDEEEAARERRRRARQERLRQKQEEESLGQVTDQVEVNAQNSVPDEEAKTTT 83
Query: 474 TNTQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFDPTIADASSSPPSRRMQNSTAE 653
TNTQ+ KEFDPTI DAS S PSRRMQN TAE
Sbjct: 84 TNTQVEGDDEAAFLERLARREERRQKRLQEALERQKEFDPTITDASLSLPSRRMQNDTAE 143
Query: 654 DETAEKDEKSESRQERYEIEETEVVTKSYQKNDWRDAEEQXXXXXXXXXXXXXXPNQGSI 833
+ET EK+EKSESRQERYEIEETE VTKSYQKNDWRDAEE P +GSI
Sbjct: 144 NETTEKEEKSESRQERYEIEETETVTKSYQKNDWRDAEENKKEDKEKEEEEEEKPKRGSI 203
Query: 834 EENQVE---MVVEEKTAETQEETGM----ALKNGQISADEPRTEE-----EREKGSHEM 974
ENQ E V+ K + QE+ +K+ +I D+ EE +R+KG E+
Sbjct: 204 GENQGEEKGTKVQAKREKLQEDKPTFKKEEIKDEKIKKDKEPKEEVKSFMDRKKGFTEV 262
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,467,681
Number of extensions: 996391
Number of successful extensions: 6216
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6049
Number of HSP's successfully gapped: 5
Length of query: 359
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 255
Effective length of database: 14,868,908
Effective search space: 3791571540
Effective search space used: 3791571540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012671
(1077 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr18 664 0.0
>Sscrofa_Chr18
|| Length = 61220071
Score = 664 bits (335), Expect = 0.0
Identities = 335/335 (100%)
Strand = Plus / Minus
Query: 440 cagtgtgcccgatgagcaggtcaagacaaccaccacgaacactcagatggaggccgatga 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15110469 cagtgtgcccgatgagcaggtcaagacaaccaccacgaacactcagatggaggccgatga 15110410
Query: 500 tgaagctgcactcctggagcgcctggctcggcgggaggaaagacgccaaaaacgccttca 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15110409 tgaagctgcactcctggagcgcctggctcggcgggaggaaagacgccaaaaacgccttca 15110350
Query: 560 ggaagcgctggagcgacagaaggagtttgatccaaccatagcagatgcaagttcgtcgcc 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15110349 ggaagcgctggagcgacagaaggagtttgatccaaccatagcagatgcaagttcgtcgcc 15110290
Query: 620 accaagcagaagaatgcagaatagcacagccgaagatgagacggcggagaaggatgagaa 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15110289 accaagcagaagaatgcagaatagcacagccgaagatgagacggcggagaaggatgagaa 15110230
Query: 680 aagtgaaagtcgccaagaaagatacgagatagaggagacagaagtagtcaccaagtccta 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15110229 aagtgaaagtcgccaagaaagatacgagatagaggagacagaagtagtcaccaagtccta 15110170
Query: 740 ccagaagaatgattggagagatgccgaagagcaaa 774
|||||||||||||||||||||||||||||||||||
Sbjct: 15110169 ccagaagaatgattggagagatgccgaagagcaaa 15110135
Score = 587 bits (296), Expect = e-165
Identities = 296/296 (100%)
Strand = Plus / Minus
Query: 1 tctctgatgatcctatgccgagggaaagggtggggaggagtagatttggcaaaggacaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15148568 tctctgatgatcctatgccgagggaaagggtggggaggagtagatttggcaaaggacaag 15148509
Query: 61 cccagactttcgtcaccgggacagaccaaagtgttaacacaaagggagaacccgggagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15148508 cccagactttcgtcaccgggacagaccaaagtgttaacacaaagggagaacccgggagca 15148449
Query: 121 tcctgcacaccgcatttcagccgcaaataccatggcacctcctcgggcccagtccacgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15148448 tcctgcacaccgcatttcagccgcaaataccatggcacctcctcgggcccagtccacgcc 15148389
Query: 181 ctgagcgccccagggtctccgcacctctgcgctcgccgcccccgccccttccagctgcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15148388 ctgagcgccccagggtctccgcacctctgcgctcgccgcccccgccccttccagctgcag 15148329
Query: 241 atatgctcgggggatccggatcgcagggaagacgcagcctggccgcgctctcccag 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15148328 atatgctcgggggatccggatcgcagggaagacgcagcctggccgcgctctcccag 15148273
Score = 490 bits (247), Expect = e-136
Identities = 258/262 (98%)
Strand = Plus / Minus
Query: 816 ccaaaccaagggagcattgaagagaatcaggtagagatggtggtagaagagaaaacagca 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15110093 ccaaaccaagggagcattgaagagaatcaggtagagatggtggtagaagagaaaacagca 15110034
Query: 876 gaaacccaagaggaaacaggaatggcattgaaaaatgggcaaatcagtgccgatgagcct 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15110033 gaaacccaagaggaaacaggaatggcattgaaaaatgggcaaatcagtgccgatgagcct 15109974
Query: 936 aggacagaggaggagagggaaaaaggttcacatgagatgccccataatgaaaagatagaa 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15109973 aggacagaggaggagagggaaaaaggttcacatgagatgccccataatgaaaagatagaa 15109914
Query: 996 gaggaagcaagggaaagagctgaggcagagagggcccggttggaagccgaagaaagagaa 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15109913 gaggaagcaagggaaagagctgaggcagagagggcccggttggaagccgaagaaagagaa 15109854
Query: 1056 agaaatgaagccgagcangacc 1077
|||| |||||||||| ||||
Sbjct: 15109853 agaatgaaagccgagcaggacc 15109832
Score = 291 bits (147), Expect = 4e-76
Identities = 147/147 (100%)
Strand = Plus / Minus
Query: 296 gatcgcctaccagaggaacgacgatgatgaggaagaggccgcccgggaacggcgccgccg 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15114394 gatcgcctaccagaggaacgacgatgatgaggaagaggccgcccgggaacggcgccgccg 15114335
Query: 356 cgcccggcaggaaaggctgcggcagaagcaagaggaagaatccttggggcaggtgaccga 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15114334 cgcccggcaggaaaggctgcggcagaagcaagaggaagaatccttggggcaggtgaccga 15114275
Query: 416 ccaggtggaggtcaatacccagaacag 442
|||||||||||||||||||||||||||
Sbjct: 15114274 ccaggtggaggtcaatacccagaacag 15114248
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,914,044
Number of extensions: 387
Number of successful extensions: 387
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 387
Number of HSP's successfully gapped: 4
Length of query: 1077
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1056
Effective length of database: 2,808,413,156
Effective search space: 2965684292736
Effective search space used: 2965684292736
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)