Animal-Genome cDNA 20110601C-012671


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012671
         (1077 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_776683.1| non-muscle caldesmon [Bos taurus].                   168   7e-42

>ref|NP_776683.1| non-muscle caldesmon [Bos taurus].
          Length = 535

 Score =  168 bits (426), Expect = 7e-42
 Identities = 103/234 (44%), Positives = 128/234 (54%), Gaps = 3/234 (1%)
 Frame = +3

Query: 294 QIAYQRNDDDXXXXXXXXXXXXXXXXXXXXXXXXSLGQVTDQVEVNTQNSVPDEQVKTTT 473
           +IAYQRNDDD                        +LGQVTDQVEVNTQNSVPDE+VKTTT
Sbjct: 24  RIAYQRNDDDEEEAARERRRRARQERLRQKQEEEALGQVTDQVEVNTQNSVPDEEVKTTT 83

Query: 474 TNTQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFDPTIADASSSPPSRRMQNSTAE 653
           TNTQ                               KEFDPTI DAS S  SRRMQN T +
Sbjct: 84  TNTQAEGDDEAALLERLARREERRQKRLQEALERQKEFDPTITDASLSLSSRRMQNDTTD 143

Query: 654 DETAEKDEKSESRQERYEIEETEVVTKSYQKNDWRDAEEQXXXXXXXXXXXXXXPNQGSI 833
           +ETAEK+ +SESRQER E+EETE+VTKS+QKNDW +AEE+              P  GSI
Sbjct: 144 NETAEKEGRSESRQERQELEETEIVTKSHQKNDWMEAEEKKKEEKEKEEEEEEKPKPGSI 203

Query: 834 EENQVEMVVEEKTAETQEETGMALKNGQISADEPRTEEEREKG---SHEMPHNE 986
           EENQ++   +EKT + +E   +      + A +  TE + + G   +H++ H E
Sbjct: 204 EENQLK---DEKTKKDKESKDV---KRFLDAKKGFTEVKSQNGEFMTHKLKHAE 251


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,883,898
Number of extensions: 1030666
Number of successful extensions: 6387
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6284
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 256
Effective length of database: 14,273,310
Effective search space: 3653967360
Effective search space used: 3653967360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-012671

Animal-Genome cDNA 20110601C-012671


Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012671
         (1077 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_859880.1| PREDICTED: similar to Non-muscle caldesmon (CDM...   112   6e-25
Alignment   gi|XP_849832.1| PREDICTED: similar to Non-muscle caldesmon (CDM...   111   1e-24

>ref|XP_859880.1| PREDICTED: similar to Non-muscle caldesmon (CDM) (L-caldesmon)
           isoform 2 [Canis familiaris].
          Length = 568

 Score =  112 bits (280), Expect = 6e-25
 Identities = 83/237 (35%), Positives = 108/237 (45%), Gaps = 4/237 (1%)
 Frame = +3

Query: 294 QIAYQRNDDDXXXXXXXXXXXXXXXXXXXXXXXXSLGQVTDQVEVNTQNSVPDEQVKTTT 473
           +IAYQRNDDD                        SLGQVTDQVEVN QNSV DE+ K+  
Sbjct: 24  RIAYQRNDDDEEEAARERRRRARQERLRQKQEEESLGQVTDQVEVNAQNSVADEEGKSGA 83

Query: 474 TNTQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFDPTIA--DASSSPPSRRMQNST 647
           T   +                              +E DPT+   DAS+SP SRR+QN+ 
Sbjct: 84  TPAPVEGDDEAALLERLARREERRQKRLQEALERQRELDPTVTVTDASASPASRRLQNNA 143

Query: 648 AEDETAEKDEKSESRQERYEIEETEVVTKSYQKNDWRDAEEQXXXXXXXXXXXXXXPNQG 827
           A  E AEK+EKSE  QE Y I   +V TK  QKND RD EE+                Q 
Sbjct: 144 APGEAAEKEEKSEPGQEGYAIAGPQVATKPQQKNDCRDTEEK---------------QQE 188

Query: 828 SIEENQVEMVVEEKTAE--TQEETGMALKNGQISADEPRTEEEREKGSHEMPHNEKI 992
             EE + E   EE+ A+  ++EE     K  +  A   +++E++     E+  +EKI
Sbjct: 189 EEEEGKAEEEEEEEKAKPGSREENQEEEKGAKAQAQREKSQEDKPAFKKEI-KDEKI 244


>ref|XP_849832.1| PREDICTED: similar to Non-muscle caldesmon (CDM) (L-caldesmon)
           isoform 1 [Canis familiaris].
          Length = 543

 Score =  111 bits (277), Expect = 1e-24
 Identities = 82/237 (34%), Positives = 108/237 (45%), Gaps = 6/237 (2%)
 Frame = +3

Query: 294 QIAYQRNDDDXXXXXXXXXXXXXXXXXXXXXXXXSLGQVTDQVEVNTQNSVPDEQVKTTT 473
           +IAYQRNDDD                        SLGQVTDQVEVN QNSV DE+ K+  
Sbjct: 24  RIAYQRNDDDEEEAARERRRRARQERLRQKQEEESLGQVTDQVEVNAQNSVADEEGKSGA 83

Query: 474 TNTQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFDPTIA--DASSSPPSRRMQNST 647
           T   +                              +E DPT+   DAS+SP SRR+QN+ 
Sbjct: 84  TPAPVEGDDEAALLERLARREERRQKRLQEALERQRELDPTVTVTDASASPASRRLQNNA 143

Query: 648 AEDETAEKDEKSESRQERYEIEETEVVTKSYQKNDWRDAEEQXXXXXXXXXXXXXXPNQ- 824
           A  E AEK+EKSE  QE Y I   +V TK  QKND RD EE+                + 
Sbjct: 144 APGEAAEKEEKSEPGQEGYAIAGPQVATKPQQKNDCRDTEEKQQEEEEEGKAEEEEEEEK 203

Query: 825 ---GSIEENQVEMVVEEKTAETQEETGMALKNGQISADEPRTEEEREKGSHEMPHNE 986
              GS EENQ++    +K  E +E    +  +G+    E ++ +  E  +H++ H E
Sbjct: 204 AKPGSREENQIKDEKIKKDKEPKEV--KSFLDGKKGFPEAKS-QNGEFMTHKLKHTE 257


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,376,385
Number of extensions: 1036412
Number of successful extensions: 7283
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6983
Number of HSP's successfully gapped: 2
Length of query: 359
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 255
Effective length of database: 15,407,560
Effective search space: 3928927800
Effective search space used: 3928927800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012671
         (1077 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003134701.1| PREDICTED: caldesmon [Sus scrofa].                425   e-119

>ref|XP_003134701.1| PREDICTED: caldesmon [Sus scrofa].
          Length = 871

 Score =  425 bits (1093), Expect = e-119
 Identities = 230/326 (70%), Positives = 230/326 (70%)
 Frame = +3

Query: 15  MPRERVGRSRFGKGQAQTFVTGTDQSVNTKGEPGSILHTAFQPQIPWHLLGPSPRPEXXX 194
           MPRERVGRSRFGKGQAQTFVTGTDQSVNTKGEPGSILHTAFQPQIPWHLLGPSPRPE   
Sbjct: 1   MPRERVGRSRFGKGQAQTFVTGTDQSVNTKGEPGSILHTAFQPQIPWHLLGPSPRPERPR 60

Query: 195 XXXXXXXXXXXXXXXDMLXXXXXXXXXXLAALSQIAYQRNDDDXXXXXXXXXXXXXXXXX 374
                          DML          LAALSQIAYQRNDDD                 
Sbjct: 61  VSAPLRSPPPPLPAADMLGGSGSQGRRSLAALSQIAYQRNDDDEEEAARERRRRARQERL 120

Query: 375 XXXXXXXSLGQVTDQVEVNTQNSVPDEQVKTTTTNTQMXXXXXXXXXXXXXXXXXXXXXX 554
                  SLGQVTDQVEVNTQNSVPDEQVKTTTTNTQM                      
Sbjct: 121 RQKQEEESLGQVTDQVEVNTQNSVPDEQVKTTTTNTQMEADDEAALLERLARREERRQKR 180

Query: 555 XXXXXXXXKEFDPTIADASSSPPSRRMQNSTAEDETAEKDEKSESRQERYEIEETEVVTK 734
                   KEFDPTIADASSSPPSRRMQNSTAEDETAEKDEKSESRQERYEIEETEVVTK
Sbjct: 181 LQEALERQKEFDPTIADASSSPPSRRMQNSTAEDETAEKDEKSESRQERYEIEETEVVTK 240

Query: 735 SYQKNDWRDAEEQXXXXXXXXXXXXXXPNQGSIEENQVEMVVEEKTAETQEETGMALKNG 914
           SYQKNDWRDAEEQ              PNQGSIEENQVEMVVEEKTAETQEETGMALKNG
Sbjct: 241 SYQKNDWRDAEEQKKEEKEKEEEEEEKPNQGSIEENQVEMVVEEKTAETQEETGMALKNG 300

Query: 915 QISADEPRTEEEREKGSHEMPHNEKI 992
           QISADEPRTEEEREKGSHEMPHNEKI
Sbjct: 301 QISADEPRTEEEREKGSHEMPHNEKI 326


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,535,311
Number of extensions: 717849
Number of successful extensions: 4176
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4109
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 259
Effective length of database: 8,854,232
Effective search space: 2293246088
Effective search space used: 2293246088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012671
         (1077 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_663550.1| caldesmon 1 [Mus musculus].                          147   1e-35

>ref|NP_663550.1| caldesmon 1 [Mus musculus].
          Length = 530

 Score =  147 bits (372), Expect = 1e-35
 Identities = 90/204 (44%), Positives = 108/204 (52%)
 Frame = +3

Query: 279 LAALSQIAYQRNDDDXXXXXXXXXXXXXXXXXXXXXXXXSLGQVTDQVEVNTQNSVPDEQ 458
           LA LSQIAYQRNDDD                        SLGQVTDQVE + QNSVPDE+
Sbjct: 13  LATLSQIAYQRNDDDEEEAARERRRRARQERLRQKQEEESLGQVTDQVEAHVQNSVPDEE 72

Query: 459 VKTTTTNTQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFDPTIADASSSPPSRRMQ 638
            K  ++NTQ+                              KEFDPTI D S S PSRRMQ
Sbjct: 73  SKPASSNTQVEGDEEAALLERLARREERRQKRLQEALERQKEFDPTITDGSLSGPSRRMQ 132

Query: 639 NSTAEDETAEKDEKSESRQERYEIEETEVVTKSYQKNDWRDAEEQXXXXXXXXXXXXXXP 818
           N +AE+ETAE +EK ESR  RYE+EETEVV KSYQKN ++DAE++               
Sbjct: 133 NDSAENETAEGEEKRESRSGRYEVEETEVVIKSYQKNSYQDAEDKKKEEKEEEEQEKL-- 190

Query: 819 NQGSIEENQVEMVVEEKTAETQEE 890
             GS+ ENQ++    +K  E +EE
Sbjct: 191 KGGSLGENQIKDEKIKKDKEPKEE 214


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,616,096
Number of extensions: 816860
Number of successful extensions: 5356
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5039
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 256
Effective length of database: 12,523,851
Effective search space: 3206105856
Effective search space used: 3206105856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012671
         (1077 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_149129.2| caldesmon isoform 1 [Homo sapiens].                  238   9e-63
Alignment   gi|NP_149131.1| caldesmon isoform 5 [Homo sapiens].                  191   1e-48
Alignment   gi|NP_149130.1| caldesmon isoform 4 [Homo sapiens].                  189   3e-48
Alignment   gi|NP_004333.1| caldesmon isoform 2 [Homo sapiens].                  182   6e-46
Alignment   gi|NP_149347.2| caldesmon isoform 3 [Homo sapiens].                  180   2e-45

>ref|NP_149129.2| caldesmon isoform 1 [Homo sapiens].
          Length = 793

 Score =  238 bits (606), Expect = 9e-63
 Identities = 132/234 (56%), Positives = 149/234 (63%), Gaps = 1/234 (0%)
 Frame = +3

Query: 294 QIAYQRNDDDXXXXXXXXXXXXXXXXXXXXXXXXSLGQVTDQVEVNTQNSVPDEQVKTTT 473
           +IAYQRNDDD                        SLGQVTDQVEVN QNSVPDE+ KTTT
Sbjct: 24  RIAYQRNDDDEEEAARERRRRARQERLRQKQEEESLGQVTDQVEVNAQNSVPDEEAKTTT 83

Query: 474 TNTQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFDPTIADASSSPPSRRMQNSTAE 653
           TNTQ+                              KEFDPTI DAS S PSRRMQN TAE
Sbjct: 84  TNTQVEGDDEAAFLERLARREERRQKRLQEALERQKEFDPTITDASLSLPSRRMQNDTAE 143

Query: 654 DETAEKDEKSESRQERYEIEETEVVTKSYQKNDWRDAEEQXXXXXXXXXXXXXXPNQGSI 833
           +ET EK+EKSESRQERYEIEETE VTKSYQKNDWRDAEE               P +GSI
Sbjct: 144 NETTEKEEKSESRQERYEIEETETVTKSYQKNDWRDAEENKKEDKEKEEEEEEKPKRGSI 203

Query: 834 EENQVEMVVEEKTAETQEET-GMALKNGQISADEPRTEEEREKGSHEMPHNEKI 992
            ENQVE++VEEKT E+QEET  M+LKNGQIS++EP+ EEERE+GS E+ H+EK+
Sbjct: 204 GENQVEVMVEEKTTESQEETVVMSLKNGQISSEEPKQEEEREQGSDEISHHEKM 257


>ref|NP_149131.1| caldesmon isoform 5 [Homo sapiens].
          Length = 532

 Score =  191 bits (485), Expect = 1e-48
 Identities = 116/241 (48%), Positives = 134/241 (55%), Gaps = 5/241 (2%)
 Frame = +3

Query: 279 LAALSQIAYQRNDDDXXXXXXXXXXXXXXXXXXXXXXXXSLGQVTDQVEVNTQNSVPDEQ 458
           LAALSQIAYQRNDDD                        SLGQVTDQVEVN QNSVPDE+
Sbjct: 13  LAALSQIAYQRNDDDEEEAARERRRRARQERLRQKQEEESLGQVTDQVEVNAQNSVPDEE 72

Query: 459 VKTTTTNTQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFDPTIADASSSPPSRRMQ 638
            KTTTTNTQ+                              KEFDPTI DAS S PSRRMQ
Sbjct: 73  AKTTTTNTQVEGDDEAAFLERLARREERRQKRLQEALERQKEFDPTITDASLSLPSRRMQ 132

Query: 639 NSTAEDETAEKDEKSESRQERYEIEETEVVTKSYQKNDWRDAEEQXXXXXXXXXXXXXXP 818
           N TAE+ET EK+EKSESRQERYEIEETE VTKSYQKNDWRDAEE               P
Sbjct: 133 NDTAENETTEKEEKSESRQERYEIEETETVTKSYQKNDWRDAEENKKEDKEKEEEEEEKP 192

Query: 819 NQGSIEENQV--EMVVEEKTAETQEETGMALKNGQISADEPRTEEEREKG---SHEMPHN 983
            +GSI ENQ+  E + ++K  + + ++ M  K G        TE + + G   +H++ H 
Sbjct: 193 KRGSIGENQIKDEKIKKDKEPKEEVKSFMDRKKG-------FTEVKSQNGEFMTHKLKHT 245

Query: 984 E 986
           E
Sbjct: 246 E 246


>ref|NP_149130.1| caldesmon isoform 4 [Homo sapiens].
          Length = 558

 Score =  189 bits (481), Expect = 3e-48
 Identities = 119/244 (48%), Positives = 134/244 (54%), Gaps = 12/244 (4%)
 Frame = +3

Query: 279 LAALSQIAYQRNDDDXXXXXXXXXXXXXXXXXXXXXXXXSLGQVTDQVEVNTQNSVPDEQ 458
           LAALSQIAYQRNDDD                        SLGQVTDQVEVN QNSVPDE+
Sbjct: 13  LAALSQIAYQRNDDDEEEAARERRRRARQERLRQKQEEESLGQVTDQVEVNAQNSVPDEE 72

Query: 459 VKTTTTNTQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFDPTIADASSSPPSRRMQ 638
            KTTTTNTQ+                              KEFDPTI DAS S PSRRMQ
Sbjct: 73  AKTTTTNTQVEGDDEAAFLERLARREERRQKRLQEALERQKEFDPTITDASLSLPSRRMQ 132

Query: 639 NSTAEDETAEKDEKSESRQERYEIEETEVVTKSYQKNDWRDAEEQXXXXXXXXXXXXXXP 818
           N TAE+ET EK+EKSESRQERYEIEETE VTKSYQKNDWRDAEE               P
Sbjct: 133 NDTAENETTEKEEKSESRQERYEIEETETVTKSYQKNDWRDAEENKKEDKEKEEEEEEKP 192

Query: 819 NQGSIEENQVE---MVVEEKTAETQEETGM----ALKNGQISADEPRTEE-----EREKG 962
            +GSI ENQ E     V+ K  + QE+        +K+ +I  D+   EE     +R+KG
Sbjct: 193 KRGSIGENQGEEKGTKVQAKREKLQEDKPTFKKEEIKDEKIKKDKEPKEEVKSFMDRKKG 252

Query: 963 SHEM 974
             E+
Sbjct: 253 FTEV 256


>ref|NP_004333.1| caldesmon isoform 2 [Homo sapiens].
          Length = 538

 Score =  182 bits (461), Expect = 6e-46
 Identities = 110/236 (46%), Positives = 129/236 (54%), Gaps = 5/236 (2%)
 Frame = +3

Query: 294 QIAYQRNDDDXXXXXXXXXXXXXXXXXXXXXXXXSLGQVTDQVEVNTQNSVPDEQVKTTT 473
           +IAYQRNDDD                        SLGQVTDQVEVN QNSVPDE+ KTTT
Sbjct: 24  RIAYQRNDDDEEEAARERRRRARQERLRQKQEEESLGQVTDQVEVNAQNSVPDEEAKTTT 83

Query: 474 TNTQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFDPTIADASSSPPSRRMQNSTAE 653
           TNTQ+                              KEFDPTI DAS S PSRRMQN TAE
Sbjct: 84  TNTQVEGDDEAAFLERLARREERRQKRLQEALERQKEFDPTITDASLSLPSRRMQNDTAE 143

Query: 654 DETAEKDEKSESRQERYEIEETEVVTKSYQKNDWRDAEEQXXXXXXXXXXXXXXPNQGSI 833
           +ET EK+EKSESRQERYEIEETE VTKSYQKNDWRDAEE               P +GSI
Sbjct: 144 NETTEKEEKSESRQERYEIEETETVTKSYQKNDWRDAEENKKEDKEKEEEEEEKPKRGSI 203

Query: 834 EENQV--EMVVEEKTAETQEETGMALKNGQISADEPRTEEEREKG---SHEMPHNE 986
            ENQ+  E + ++K  + + ++ M  K G        TE + + G   +H++ H E
Sbjct: 204 GENQIKDEKIKKDKEPKEEVKSFMDRKKG-------FTEVKSQNGEFMTHKLKHTE 252


>ref|NP_149347.2| caldesmon isoform 3 [Homo sapiens].
          Length = 563

 Score =  180 bits (457), Expect = 2e-45
 Identities = 113/239 (47%), Positives = 129/239 (53%), Gaps = 12/239 (5%)
 Frame = +3

Query: 294 QIAYQRNDDDXXXXXXXXXXXXXXXXXXXXXXXXSLGQVTDQVEVNTQNSVPDEQVKTTT 473
           +IAYQRNDDD                        SLGQVTDQVEVN QNSVPDE+ KTTT
Sbjct: 24  RIAYQRNDDDEEEAARERRRRARQERLRQKQEEESLGQVTDQVEVNAQNSVPDEEAKTTT 83

Query: 474 TNTQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFDPTIADASSSPPSRRMQNSTAE 653
           TNTQ+                              KEFDPTI DAS S PSRRMQN TAE
Sbjct: 84  TNTQVEGDDEAAFLERLARREERRQKRLQEALERQKEFDPTITDASLSLPSRRMQNDTAE 143

Query: 654 DETAEKDEKSESRQERYEIEETEVVTKSYQKNDWRDAEEQXXXXXXXXXXXXXXPNQGSI 833
           +ET EK+EKSESRQERYEIEETE VTKSYQKNDWRDAEE               P +GSI
Sbjct: 144 NETTEKEEKSESRQERYEIEETETVTKSYQKNDWRDAEENKKEDKEKEEEEEEKPKRGSI 203

Query: 834 EENQVE---MVVEEKTAETQEETGM----ALKNGQISADEPRTEE-----EREKGSHEM 974
            ENQ E     V+ K  + QE+        +K+ +I  D+   EE     +R+KG  E+
Sbjct: 204 GENQGEEKGTKVQAKREKLQEDKPTFKKEEIKDEKIKKDKEPKEEVKSFMDRKKGFTEV 262


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,467,681
Number of extensions: 996391
Number of successful extensions: 6216
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6049
Number of HSP's successfully gapped: 5
Length of query: 359
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 255
Effective length of database: 14,868,908
Effective search space: 3791571540
Effective search space used: 3791571540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012671
         (1077 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr18                                                         664   0.0  

>Sscrofa_Chr18 
||          Length = 61220071

 Score =  664 bits (335), Expect = 0.0
 Identities = 335/335 (100%)
 Strand = Plus / Minus

                                                                            
Query: 440      cagtgtgcccgatgagcaggtcaagacaaccaccacgaacactcagatggaggccgatga 499
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15110469 cagtgtgcccgatgagcaggtcaagacaaccaccacgaacactcagatggaggccgatga 15110410

                                                                            
Query: 500      tgaagctgcactcctggagcgcctggctcggcgggaggaaagacgccaaaaacgccttca 559
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15110409 tgaagctgcactcctggagcgcctggctcggcgggaggaaagacgccaaaaacgccttca 15110350

                                                                            
Query: 560      ggaagcgctggagcgacagaaggagtttgatccaaccatagcagatgcaagttcgtcgcc 619
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15110349 ggaagcgctggagcgacagaaggagtttgatccaaccatagcagatgcaagttcgtcgcc 15110290

                                                                            
Query: 620      accaagcagaagaatgcagaatagcacagccgaagatgagacggcggagaaggatgagaa 679
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15110289 accaagcagaagaatgcagaatagcacagccgaagatgagacggcggagaaggatgagaa 15110230

                                                                            
Query: 680      aagtgaaagtcgccaagaaagatacgagatagaggagacagaagtagtcaccaagtccta 739
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15110229 aagtgaaagtcgccaagaaagatacgagatagaggagacagaagtagtcaccaagtccta 15110170

                                                   
Query: 740      ccagaagaatgattggagagatgccgaagagcaaa 774
                |||||||||||||||||||||||||||||||||||
Sbjct: 15110169 ccagaagaatgattggagagatgccgaagagcaaa 15110135



 Score =  587 bits (296), Expect = e-165
 Identities = 296/296 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1        tctctgatgatcctatgccgagggaaagggtggggaggagtagatttggcaaaggacaag 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15148568 tctctgatgatcctatgccgagggaaagggtggggaggagtagatttggcaaaggacaag 15148509

                                                                            
Query: 61       cccagactttcgtcaccgggacagaccaaagtgttaacacaaagggagaacccgggagca 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15148508 cccagactttcgtcaccgggacagaccaaagtgttaacacaaagggagaacccgggagca 15148449

                                                                            
Query: 121      tcctgcacaccgcatttcagccgcaaataccatggcacctcctcgggcccagtccacgcc 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15148448 tcctgcacaccgcatttcagccgcaaataccatggcacctcctcgggcccagtccacgcc 15148389

                                                                            
Query: 181      ctgagcgccccagggtctccgcacctctgcgctcgccgcccccgccccttccagctgcag 240
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15148388 ctgagcgccccagggtctccgcacctctgcgctcgccgcccccgccccttccagctgcag 15148329

                                                                        
Query: 241      atatgctcgggggatccggatcgcagggaagacgcagcctggccgcgctctcccag 296
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15148328 atatgctcgggggatccggatcgcagggaagacgcagcctggccgcgctctcccag 15148273



 Score =  490 bits (247), Expect = e-136
 Identities = 258/262 (98%)
 Strand = Plus / Minus

                                                                            
Query: 816      ccaaaccaagggagcattgaagagaatcaggtagagatggtggtagaagagaaaacagca 875
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15110093 ccaaaccaagggagcattgaagagaatcaggtagagatggtggtagaagagaaaacagca 15110034

                                                                            
Query: 876      gaaacccaagaggaaacaggaatggcattgaaaaatgggcaaatcagtgccgatgagcct 935
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15110033 gaaacccaagaggaaacaggaatggcattgaaaaatgggcaaatcagtgccgatgagcct 15109974

                                                                            
Query: 936      aggacagaggaggagagggaaaaaggttcacatgagatgccccataatgaaaagatagaa 995
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15109973 aggacagaggaggagagggaaaaaggttcacatgagatgccccataatgaaaagatagaa 15109914

                                                                            
Query: 996      gaggaagcaagggaaagagctgaggcagagagggcccggttggaagccgaagaaagagaa 1055
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15109913 gaggaagcaagggaaagagctgaggcagagagggcccggttggaagccgaagaaagagaa 15109854

                                      
Query: 1056     agaaatgaagccgagcangacc 1077
                ||||   |||||||||| ||||
Sbjct: 15109853 agaatgaaagccgagcaggacc 15109832



 Score =  291 bits (147), Expect = 4e-76
 Identities = 147/147 (100%)
 Strand = Plus / Minus

                                                                            
Query: 296      gatcgcctaccagaggaacgacgatgatgaggaagaggccgcccgggaacggcgccgccg 355
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15114394 gatcgcctaccagaggaacgacgatgatgaggaagaggccgcccgggaacggcgccgccg 15114335

                                                                            
Query: 356      cgcccggcaggaaaggctgcggcagaagcaagaggaagaatccttggggcaggtgaccga 415
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15114334 cgcccggcaggaaaggctgcggcagaagcaagaggaagaatccttggggcaggtgaccga 15114275

                                           
Query: 416      ccaggtggaggtcaatacccagaacag 442
                |||||||||||||||||||||||||||
Sbjct: 15114274 ccaggtggaggtcaatacccagaacag 15114248


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,914,044
Number of extensions: 387
Number of successful extensions: 387
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 387
Number of HSP's successfully gapped: 4
Length of query: 1077
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1056
Effective length of database: 2,808,413,156
Effective search space: 2965684292736
Effective search space used: 2965684292736
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)