Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012716
(1043 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039627.1| dehydrogenase/reductase SDR family member 7 ... 508 e-144
Alignment gi|NP_001030420.1| dehydrogenase/reductase SDR family member 7B... 146 3e-35
Alignment gi|XP_002702202.1| PREDICTED: dehydrogenase/reductase SDR famil... 144 1e-34
Alignment gi|NP_001039751.1| estradiol 17-beta-dehydrogenase 11 [Bos taur... 97 2e-20
Alignment gi|NP_776592.1| retinol dehydrogenase 8 [Bos taurus]. 92 8e-19
Alignment gi|NP_001116504.1| corticosteroid 11-beta-dehydrogenase isozyme... 92 1e-18
Alignment gi|NP_001040081.1| 17-beta-hydroxysteroid dehydrogenase 13 [Bos... 92 1e-18
Alignment gi|NP_001039384.1| 3-ketodihydrosphingosine reductase precursor... 89 5e-18
Alignment gi|NP_996852.1| hydroxysteroid 11-beta-dehydrogenase 1-like pro... 89 6e-18
Alignment gi|NP_001069264.1| retinol dehydrogenase 16 [Bos taurus]. 85 1e-16
>ref|NP_001039627.1| dehydrogenase/reductase SDR family member 7 [Bos taurus].
Length = 339
Score = 508 bits (1307), Expect = e-144
Identities = 250/311 (80%), Positives = 272/311 (87%)
Frame = +1
Query: 106 MSWEXXXXXXXXXXXXXXXXXXXXXXXXDGDLTLLWAEWQGRRPEWELTDMVVWVTGASS 285
MSWE D DLTLLWAEWQGRRPEWELTDMVVWVTGASS
Sbjct: 1 MSWELLLWLLALCALLALVVQLLRFLRADADLTLLWAEWQGRRPEWELTDMVVWVTGASS 60
Query: 286 GIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDLANRSSHEV 465
GIGEEL YQLSKLGVSLVLSARR+ ELERVKR+CLENG LK KDILILPLDL +RSSHE+
Sbjct: 61 GIGEELAYQLSKLGVSLVLSARRMHELERVKRKCLENGNLKEKDILILPLDLTDRSSHEM 120
Query: 466 ATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTKCVLPHMIEK 645
ATKAVLQEFG+IDILVNNGGVSQR+LCVDTSLDV+KEL+E+NYLGTVSLTKCVLPHMIE+
Sbjct: 121 ATKAVLQEFGRIDILVNNGGVSQRALCVDTSLDVFKELIELNYLGTVSLTKCVLPHMIER 180
Query: 646 KQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITVSNVCPGPVKSN 825
KQGKI+TVNS +GIIAAPLS GYCASKHALRGFFNTLR+ELATYPGIT+SN+CPGPV+SN
Sbjct: 181 KQGKIVTVNSMVGIIAAPLSTGYCASKHALRGFFNTLRSELATYPGITISNICPGPVQSN 240
Query: 826 IVKNALTEEVTKTLGSDADQSHKMATSRCARLMLIAMANDLKEVWIAEQPFLAMAYLWQY 1005
IVKNALTEEVTK GS ADQS+KMATSRC RLML+AMANDLKEVWI++QPFL M YLWQY
Sbjct: 241 IVKNALTEEVTKPTGSTADQSYKMATSRCVRLMLVAMANDLKEVWISDQPFLLMIYLWQY 300
Query: 1006 IPTWAWWLTSK 1038
+PT AWWLT+K
Sbjct: 301 MPTLAWWLTNK 311
>ref|NP_001030420.1| dehydrogenase/reductase SDR family member 7B [Bos taurus].
Length = 325
Score = 146 bits (368), Expect = 3e-35
Identities = 89/247 (36%), Positives = 137/247 (55%), Gaps = 4/247 (1%)
Frame = +1
Query: 259 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLEN---GILKGKDILIL 429
VV +TGA+SG+G E G LVL R + LE + + + G+ K +
Sbjct: 54 VVVITGATSGLGRECARVFHAAGARLVLCGRNAEALEELSQELAASRAPGVQTHKPCTVT 113
Query: 430 PLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVS 609
DLA+ + A +LQ FG +D+L+NN G+S R VDTS DV K +ME NY G V+
Sbjct: 114 -FDLADPGAIAGAASEILQCFGHVDVLINNAGISYRGAIVDTSPDVDKRVMETNYFGPVA 172
Query: 610 LTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGIT 789
LTK +LP MI ++QG ++ ++S G I+ P Y ASKHA + FF+ LR E+ + I
Sbjct: 173 LTKALLPAMIRRRQGHVVAISSIQGKISLPFRSAYAASKHATQAFFDCLRAEVEQH-DIE 231
Query: 790 VSNVCPGPVKSNIVKNALTEEVTKTLGSDADQSHKMATSRCARLMLIAMANDLKEVWIAE 969
V+ + PG + +N+ NA+T + +K D + + + A+ +L A+ K+V +A+
Sbjct: 232 VTVISPGYIHTNLSLNAVTADGSKYGVMDETTAQGRSPVQVAQDILAALGKKKKDVVLAD 291
Query: 970 -QPFLAM 987
P LA+
Sbjct: 292 PMPSLAV 298
>ref|XP_002702202.1| PREDICTED: dehydrogenase/reductase SDR family member 7B-like [Bos
taurus].
Length = 325
Score = 144 bits (363), Expect = 1e-34
Identities = 87/246 (35%), Positives = 136/246 (55%), Gaps = 3/246 (1%)
Frame = +1
Query: 259 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGI--LKGKDILILP 432
VV +TGA+SG+G E G LVL R + LE + + + ++ +
Sbjct: 54 VVVITGATSGLGRECARVFHAAGARLVLCGRNAEALEELSQELAASRAPEVQTHKPCTVT 113
Query: 433 LDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSL 612
DLA+ + A +LQ FG +D+L+NN G+S R VDTS DV K +ME NY G V+L
Sbjct: 114 FDLADPGAIAGAASEILQCFGHVDVLINNAGISYRGAIVDTSPDVDKRVMETNYFGPVAL 173
Query: 613 TKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITV 792
TK +LP MI ++QG ++ ++S G I+ P Y ASKHA + FF+ LR E+ + I V
Sbjct: 174 TKALLPAMIRRRQGHVVAISSIQGKISLPFRSAYAASKHATQAFFDCLRAEVEQH-DIEV 232
Query: 793 SNVCPGPVKSNIVKNALTEEVTKTLGSDADQSHKMATSRCARLMLIAMANDLKEVWIAE- 969
+ + PG + +N+ NA+T + +K D + + + A+ +L A+ K+V +A+
Sbjct: 233 TVISPGYIHTNLSLNAVTADGSKYGVMDETTAQGRSPVQVAQDILAALGKKKKDVVLADP 292
Query: 970 QPFLAM 987
P LA+
Sbjct: 293 MPSLAV 298
>ref|NP_001039751.1| estradiol 17-beta-dehydrogenase 11 [Bos taurus].
Length = 316
Score = 97.1 bits (240), Expect = 2e-20
Identities = 67/202 (33%), Positives = 91/202 (45%), Gaps = 2/202 (0%)
Frame = +1
Query: 247 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILI 426
+T +V +TGA GIG + Y+ +KL LVL LE C G K ++
Sbjct: 50 VTGEIVLITGAGHGIGRQTAYEFAKLKCKLVLWDINKHGLEETATECKRLGA-KAHTFVV 108
Query: 427 LPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTV 606
D +NR + K V E G + ILVNN GV S T ++ EVN L
Sbjct: 109 ---DCSNREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNILAHF 165
Query: 607 SLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATY--P 780
TK LP M++ G I+TV S G P YC+SK A GF L EL+
Sbjct: 166 WTTKAFLPEMMKNNHGHIVTVASAAGHTGVPFLLAYCSSKFAAVGFHKALTEELSALKRT 225
Query: 781 GITVSNVCPGPVKSNIVKNALT 846
G+ + +CP + + +KN T
Sbjct: 226 GVKTTCLCPNFINTGFIKNPST 247
>ref|NP_776592.1| retinol dehydrogenase 8 [Bos taurus].
Length = 312
Score = 92.0 bits (227), Expect = 8e-19
Identities = 67/208 (32%), Positives = 100/208 (48%), Gaps = 1/208 (0%)
Frame = +1
Query: 262 VWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDL 441
V ++G SSGIG EL QL+ +++L + G G+ + + LD+
Sbjct: 8 VLISGCSSGIGLELAVQLAHDPRQRYQVVATMRDLGKKGTLETAAGEALGQTLTVAQLDV 67
Query: 442 ANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTKC 621
S VA + G++D+LVNN GV SL + + + N+ G V L K
Sbjct: 68 C--SDESVAQCLNCIQGGEVDVLVNNAGVGLVGPLEGLSLAAMQNVFDTNFFGAVRLVKA 125
Query: 622 VLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITVSNV 801
VLP M ++QG I+ V+S MG+ + Y ASK A+ GFF +L +L + I +S V
Sbjct: 126 VLPSMKRRRQGHIVVVSSVMGLQGVVFNEVYAASKFAMEGFFESLAVQLLQF-NIFISLV 184
Query: 802 CPGPVKSNIVKNALTEEVTKTL-GSDAD 882
PGPV + L + T G+D D
Sbjct: 185 EPGPVVTEFEGKLLEQVSTAEFPGTDPD 212
>ref|NP_001116504.1| corticosteroid 11-beta-dehydrogenase isozyme 1 [Bos taurus].
Length = 292
Score = 91.7 bits (226), Expect = 1e-18
Identities = 67/205 (32%), Positives = 104/205 (50%), Gaps = 1/205 (0%)
Frame = +1
Query: 232 RPEWELTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKG 411
RPE L V VTGAS GIG E+ Y L+++G +V++AR + L++V RCLE G
Sbjct: 28 RPEM-LRGKRVIVTGASKGIGREMAYHLARMGAHVVVTARSEESLKKVVSRCLELGAASA 86
Query: 412 KDILILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVN 591
+ + N + E + G +D+L+ N + + + +EVN
Sbjct: 87 H---YVAGTMENMTFAEQFVAKAGELVGGLDMLILNHIHYTPLGVFSNDIHLLRRTLEVN 143
Query: 592 YLGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTEL- 768
L V L+ LP M+++ G I+ V+S G IA PL Y ASK AL GFF++LR E
Sbjct: 144 LLSYVVLSTAALP-MLKQTNGSIVVVSSIAGKIACPLVAAYSASKFALDGFFSSLRMEYE 202
Query: 769 ATYPGITVSNVCPGPVKSNIVKNAL 843
AT ++++ G + ++ A+
Sbjct: 203 ATKVNVSITLCILGLIDTDTAMKAV 227
>ref|NP_001040081.1| 17-beta-hydroxysteroid dehydrogenase 13 [Bos taurus].
Length = 300
Score = 91.7 bits (226), Expect = 1e-18
Identities = 64/198 (32%), Positives = 90/198 (45%), Gaps = 2/198 (1%)
Frame = +1
Query: 259 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLD 438
+V +TGA GIG + Y+ +K LVL +E C + G + +D
Sbjct: 38 IVLITGAGHGIGRQTAYEFAKRKSRLVLWDINKHGVEETAAECRKLGATTH----VFVVD 93
Query: 439 LANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTK 618
+NR + V +E G + I+VNN G + + T + + EVN LG +TK
Sbjct: 94 CSNREEIYSSVNQVKKEVGDVTIVVNNAGAIYPADLLSTKDEEITKTFEVNILGHFWITK 153
Query: 619 CVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATY--PGITV 792
+LP MI + G I+TV S G P YC+SK A GF L +EL GI
Sbjct: 154 ALLPSMIRRNHGHIVTVASVCGHGVIPYLIPYCSSKFAAVGFHRALTSELEALGKTGIKT 213
Query: 793 SNVCPGPVKSNIVKNALT 846
S +CP V + KN T
Sbjct: 214 SCLCPVFVNTGFTKNPST 231
>ref|NP_001039384.1| 3-ketodihydrosphingosine reductase precursor [Bos taurus].
Length = 331
Score = 89.4 bits (220), Expect = 5e-18
Identities = 63/207 (30%), Positives = 106/207 (51%), Gaps = 6/207 (2%)
Frame = +1
Query: 262 VWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDL 441
V VTG SSGIG+ + + K G + L AR +L + K+ ++ I + +L + +D+
Sbjct: 35 VVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKEIEKHSINDKQVVLCISVDV 94
Query: 442 ANRSSH-EVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTK 618
+ S E K ++ G +D+LVN G+S D + ++ LM +NYLG+V ++
Sbjct: 95 SQDYSQVENVIKQAQEKLGPVDMLVNCAGMSLSGKFEDLEVSTFERLMSINYLGSVYPSR 154
Query: 619 CVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATY-PGITVS 795
V+ M E++ G+++ V+S G + Y +SK ALRG L+ E+ Y +TV+
Sbjct: 155 AVIATMKERRMGRVVFVSSQAGQLGLFGYTAYSSSKFALRGLAEALQMEVKPYNVYVTVA 214
Query: 796 ----NVCPGPVKSNIVKNALTEEVTKT 864
PG K N K T +++T
Sbjct: 215 YPPDTDTPGFAKENQTKPLETRLISET 241
>ref|NP_996852.1| hydroxysteroid 11-beta-dehydrogenase 1-like protein precursor [Bos
taurus].
Length = 287
Score = 89.0 bits (219), Expect = 6e-18
Identities = 60/170 (35%), Positives = 92/170 (54%), Gaps = 1/170 (0%)
Frame = +1
Query: 262 VWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDL 441
V +TG S+GIGEEL Y ++LG LVL+A L++V C + G K + + D+
Sbjct: 32 VLLTGVSAGIGEELAYHYARLGSHLVLTAHTEALLQQVVGNCRKLGAPK---VFYIAADM 88
Query: 442 ANRSSHEVATKAVLQEFGKIDILV-NNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTK 618
A+ E + L + G +D LV N+ G + V +S + LM++N+L V LT
Sbjct: 89 ASPEVPERVVQFALDKLGGLDYLVLNHLGAAPAGTRVRSSQST-RWLMQMNFLSYVQLTS 147
Query: 619 CVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTEL 768
LP + + K G ++ V+S +G + S Y A+K AL FF++LR EL
Sbjct: 148 SALPSLTDSK-GSLVVVSSLLGRVPTSFSSPYSAAKFALDSFFSSLRREL 196
>ref|NP_001069264.1| retinol dehydrogenase 16 [Bos taurus].
Length = 317
Score = 84.7 bits (208), Expect = 1e-16
Identities = 62/198 (31%), Positives = 105/198 (53%), Gaps = 4/198 (2%)
Frame = +1
Query: 247 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILI 426
L D V++TG SG G L QL G+ ++ + + E+++ + + +
Sbjct: 27 LRDKFVFITGCDSGFGNLLARQLDLRGLRVLAACLTEKGAEQLRNQTSDR-------LQT 79
Query: 427 LPLDLANRSSHEVATKAVLQEFGKIDI--LVNNGGVSQRSLCVD--TSLDVYKELMEVNY 594
+ LD+ S AT+ V + G + LVNN G+S + + T D K +++VN
Sbjct: 80 VILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTAPNEWLTKQDFMK-ILDVNL 138
Query: 595 LGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELAT 774
LG + +T VLP ++ K +G+++ V+S MG +A L GGYC SK+ + F ++LR EL +
Sbjct: 139 LGVIDVTLSVLP-LVRKARGRVVNVSSIMGRVAL-LGGGYCMSKYGVEAFSDSLRREL-S 195
Query: 775 YPGITVSNVCPGPVKSNI 828
Y G+ V + PG K+ +
Sbjct: 196 YFGVKVVMIEPGYFKTAV 213
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,405,675
Number of extensions: 1040282
Number of successful extensions: 2682
Number of sequences better than 1.0e-05: 52
Number of HSP's gapped: 2624
Number of HSP's successfully gapped: 52
Length of query: 347
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 244
Effective length of database: 14,273,310
Effective search space: 3482687640
Effective search space used: 3482687640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012716
(1043 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537465.2| PREDICTED: similar to Dehydrogenase/reductase S... 516 e-146
Alignment gi|XP_536670.2| PREDICTED: similar to CG7601-PA [Canis familiar... 149 6e-36
Alignment gi|XP_536640.2| PREDICTED: similar to CG7601-PA isoform 1 [Cani... 105 5e-23
Alignment gi|XP_861006.1| PREDICTED: similar to CG7601-PA isoform 2 [Cani... 104 1e-22
Alignment gi|NP_001005756.1| corticosteroid 11-beta-dehydrogenase isozyme... 94 3e-19
Alignment gi|XP_544970.2| PREDICTED: similar to dehydrogenase/reductase (... 93 4e-19
Alignment gi|XP_535646.2| PREDICTED: similar to alcohol dehydrogenase PAN... 93 4e-19
Alignment gi|XP_850000.1| PREDICTED: similar to hydroxysteroid (17-beta) ... 93 4e-19
Alignment gi|XP_854042.1| PREDICTED: similar to retinol dehydrogenase 8 (... 93 5e-19
Alignment gi|XP_852048.1| PREDICTED: similar to follicular lymphoma varia... 89 7e-18
>ref|XP_537465.2| PREDICTED: similar to Dehydrogenase/reductase SDR family member 7
precursor (Retinal short-chain dehydrogenase/reductase 4)
(retSDR4) [Canis familiaris].
Length = 437
Score = 516 bits (1329), Expect = e-146
Identities = 253/320 (79%), Positives = 274/320 (85%)
Frame = +1
Query: 76 SPQSRACAAVMSWEXXXXXXXXXXXXXXXXXXXXXXXXDGDLTLLWAEWQGRRPEWELTD 255
SP SRA AA MSWE DGDLTLLWAEWQGRRPEWELTD
Sbjct: 89 SPASRARAAAMSWELLLWLLALGALLALLVQLLRFVRADGDLTLLWAEWQGRRPEWELTD 148
Query: 256 MVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPL 435
MV+WVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILK KDI +LPL
Sbjct: 149 MVIWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKEKDIFVLPL 208
Query: 436 DLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLT 615
DL +RSSHE ATKAVLQEFGKIDILVNNGG SQRSLCVDT+LDV+KELME+NYLGTVSLT
Sbjct: 209 DLTDRSSHEAATKAVLQEFGKIDILVNNGGQSQRSLCVDTNLDVFKELMELNYLGTVSLT 268
Query: 616 KCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITVS 795
CVLPHMIE+KQGKI+TVNS +GII+APLS GYCASKHALRGFFN LR ELA YPGI +S
Sbjct: 269 MCVLPHMIERKQGKIVTVNSLLGIISAPLSSGYCASKHALRGFFNCLRVELAEYPGIVIS 328
Query: 796 NVCPGPVKSNIVKNALTEEVTKTLGSDADQSHKMATSRCARLMLIAMANDLKEVWIAEQP 975
N+CPGPV+SNIVKN+LTEEVTK++G D QSHKMATSRC RLMLI+MANDLKEVWIA+ P
Sbjct: 329 NICPGPVQSNIVKNSLTEEVTKSVGIDTVQSHKMATSRCVRLMLISMANDLKEVWIADHP 388
Query: 976 FLAMAYLWQYIPTWAWWLTS 1035
FL + YLWQY+PTWAWWLT+
Sbjct: 389 FLLVVYLWQYMPTWAWWLTN 408
>ref|XP_536670.2| PREDICTED: similar to CG7601-PA [Canis familiaris].
Length = 325
Score = 149 bits (375), Expect = 6e-36
Identities = 88/243 (36%), Positives = 136/243 (55%), Gaps = 2/243 (0%)
Frame = +1
Query: 247 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDI-- 420
L + VV +TGA+SG+G E G LVL R + LE + + + K +
Sbjct: 50 LRNAVVVITGATSGLGRECARVFYTAGAKLVLCGRNQKALEELTKELTASPATKVQTHKP 109
Query: 421 LILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLG 600
++ DLA+ + AT +LQ FG +D+L+NN G+S R VDT+ DV K++ME NY G
Sbjct: 110 YMVTFDLADPGAIIAATAEILQCFGYVDVLINNAGISYRGAIVDTTTDVDKKVMETNYFG 169
Query: 601 TVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYP 780
V+LTK +LP MI+++QG I+ ++S G I+ P Y ASKHA + FF+ LR E+ Y
Sbjct: 170 PVALTKALLPSMIKRRQGHIVVISSIQGKISIPFRSAYAASKHATQAFFDCLRAEMEQYE 229
Query: 781 GITVSNVCPGPVKSNIVKNALTEEVTKTLGSDADQSHKMATSRCARLMLIAMANDLKEVW 960
I V+ + PG + +N+ NA+T + + D + + AR +L A+ K+V
Sbjct: 230 -IEVTVISPGYIHTNLSLNAVTADGSTYGVMDKTTAQGRSPVEVARDVLAAVGKKKKDVI 288
Query: 961 IAE 969
+A+
Sbjct: 289 LAD 291
>ref|XP_536640.2| PREDICTED: similar to CG7601-PA isoform 1 [Canis familiaris].
Length = 311
Score = 105 bits (263), Expect = 5e-23
Identities = 66/194 (34%), Positives = 104/194 (53%), Gaps = 6/194 (3%)
Frame = +1
Query: 259 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDIL----- 423
VV +T A SG+G+E G LVL + + L+ L + ++ D
Sbjct: 39 VVVITDAISGLGKECARVFHTGGARLVLCGKNWERLQ-----ILYDALISVADPSKTFTP 93
Query: 424 -ILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLG 600
++ LDL++ S + K VL +G +DIL+NN + + SL++ K++M+ NY G
Sbjct: 94 KLVLLDLSDISCVQDVAKEVLDCYGCVDILINNASMKVKGPAHKISLELDKKIMDANYFG 153
Query: 601 TVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYP 780
++LTK +LP MI ++ G+I+ VN+ G + P Y ASKHA GFF+ LR E+ Y
Sbjct: 154 PITLTKALLPDMISRRTGQIVLVNNIQGKLGIPFRTAYAASKHAALGFFDCLRAEVEEY- 212
Query: 781 GITVSNVCPGPVKS 822
+ VS V P ++S
Sbjct: 213 DVVVSTVSPTFIRS 226
>ref|XP_861006.1| PREDICTED: similar to CG7601-PA isoform 2 [Canis familiaris].
Length = 317
Score = 104 bits (260), Expect = 1e-22
Identities = 65/189 (34%), Positives = 101/189 (53%), Gaps = 6/189 (3%)
Frame = +1
Query: 259 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDIL----- 423
VV +T A SG+G+E G LVL + + L+ L + ++ D
Sbjct: 39 VVVITDAISGLGKECARVFHTGGARLVLCGKNWERLQ-----ILYDALISVADPSKTFTP 93
Query: 424 -ILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLG 600
++ LDL++ S + K VL +G +DIL+NN + + SL++ K++M+ NY G
Sbjct: 94 KLVLLDLSDISCVQDVAKEVLDCYGCVDILINNASMKVKGPAHKISLELDKKIMDANYFG 153
Query: 601 TVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYP 780
++LTK +LP MI ++ G+I+ VN+ G + P Y ASKHA GFF+ LR E+ Y
Sbjct: 154 PITLTKALLPDMISRRTGQIVLVNNIQGKLGIPFRTAYAASKHAALGFFDCLRAEVEEY- 212
Query: 781 GITVSNVCP 807
+ VS V P
Sbjct: 213 DVVVSTVSP 221
>ref|NP_001005756.1| corticosteroid 11-beta-dehydrogenase isozyme 1 [Canis lupus
familiaris].
Length = 293
Score = 93.6 bits (231), Expect = 3e-19
Identities = 66/219 (30%), Positives = 115/219 (52%), Gaps = 1/219 (0%)
Frame = +1
Query: 232 RPEWELTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKG 411
RPE L V VTGAS GIGE++ Y L+K+G +V++AR + L++V CLE G
Sbjct: 28 RPEM-LQGKKVIVTGASKGIGEQMAYHLAKMGAHVVVTARSKETLKKVVSHCLELGAASA 86
Query: 412 KDILILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVN 591
+P + + + E + G +D+L+ N + + + + MEVN
Sbjct: 87 H---YIPGTMEDMTFAEQFVAKAGKLMGGLDMLILNHITNTSMNLFSGDIHLVRRSMEVN 143
Query: 592 YLGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTE-L 768
+L V L+ LP M+++ G I+ V+S G +++PL Y ASK AL GFF+++R E
Sbjct: 144 FLSYVVLSAAALP-MLKQSNGSIVVVSSKAGKMSSPLVAPYSASKFALDGFFSSVRMEHS 202
Query: 769 ATYPGITVSNVCPGPVKSNIVKNALTEEVTKTLGSDADQ 885
T ++++ G + ++ A++ + T+G+ + +
Sbjct: 203 VTKVNVSITLCILGLINTDTAMKAVS-GILSTVGASSKE 240
>ref|XP_544970.2| PREDICTED: similar to dehydrogenase/reductase (SDR family) member 8
[Canis familiaris].
Length = 300
Score = 93.2 bits (230), Expect = 4e-19
Identities = 66/202 (32%), Positives = 89/202 (44%), Gaps = 2/202 (0%)
Frame = +1
Query: 247 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILI 426
+T +V +TGA GIG Y+ +KL LVL +E C G +
Sbjct: 34 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGIEDTAAECRR----LGAKVHA 89
Query: 427 LPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTV 606
+D +NR + V E G + ILVNN GV S T ++ EVN L
Sbjct: 90 FVVDCSNREDIYGSATKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHF 149
Query: 607 SLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATY--P 780
TK LP M++ G I+TV S G P YC+SK A GF L ELA
Sbjct: 150 WTTKAFLPVMMKNNHGHIVTVASAAGHTGVPFLLAYCSSKFAAVGFHKALTEELAALERT 209
Query: 781 GITVSNVCPGPVKSNIVKNALT 846
G+ + +CP + + +KNA T
Sbjct: 210 GVKTTCLCPNFINTGFIKNAST 231
>ref|XP_535646.2| PREDICTED: similar to alcohol dehydrogenase PAN1B-like isoform 1
[Canis familiaris].
Length = 271
Score = 93.2 bits (230), Expect = 4e-19
Identities = 66/198 (33%), Positives = 90/198 (45%), Gaps = 2/198 (1%)
Frame = +1
Query: 259 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLD 438
+V +TGA GIG Y+ +K LVL +E C + G + +D
Sbjct: 38 IVLITGAGHGIGRWTAYEFAKQKSRLVLWDINKHGVEETAAECRK----LGATVHTFVVD 93
Query: 439 LANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTK 618
NR + K V +E G + ILVNN G + + T + + E+N LG +TK
Sbjct: 94 CGNREDIYNSVKQVKKEVGDVTILVNNAGTVYPADLLSTKDEEITKTFEINILGHFWITK 153
Query: 619 CVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELAT--YPGITV 792
+LP MI++ G I+TV S G P YC+SK A GF L EL T GI
Sbjct: 154 ALLPSMIKRNHGHIVTVASVCGHGVIPYLIPYCSSKFAAVGFHRALTLELQTLGITGIKT 213
Query: 793 SNVCPGPVKSNIVKNALT 846
S +CP V + KN T
Sbjct: 214 SCLCPVFVNTGFTKNPST 231
>ref|XP_850000.1| PREDICTED: similar to hydroxysteroid (17-beta) dehydrogenase 13
isoform 2 [Canis familiaris].
Length = 300
Score = 93.2 bits (230), Expect = 4e-19
Identities = 66/198 (33%), Positives = 90/198 (45%), Gaps = 2/198 (1%)
Frame = +1
Query: 259 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLD 438
+V +TGA GIG Y+ +K LVL +E C + G + +D
Sbjct: 38 IVLITGAGHGIGRWTAYEFAKQKSRLVLWDINKHGVEETAAECRK----LGATVHTFVVD 93
Query: 439 LANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTK 618
NR + K V +E G + ILVNN G + + T + + E+N LG +TK
Sbjct: 94 CGNREDIYNSVKQVKKEVGDVTILVNNAGTVYPADLLSTKDEEITKTFEINILGHFWITK 153
Query: 619 CVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELAT--YPGITV 792
+LP MI++ G I+TV S G P YC+SK A GF L EL T GI
Sbjct: 154 ALLPSMIKRNHGHIVTVASVCGHGVIPYLIPYCSSKFAAVGFHRALTLELQTLGITGIKT 213
Query: 793 SNVCPGPVKSNIVKNALT 846
S +CP V + KN T
Sbjct: 214 SCLCPVFVNTGFTKNPST 231
>ref|XP_854042.1| PREDICTED: similar to retinol dehydrogenase 8 (all-trans) [Canis
familiaris].
Length = 312
Score = 92.8 bits (229), Expect = 5e-19
Identities = 65/207 (31%), Positives = 105/207 (50%)
Frame = +1
Query: 262 VWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDL 441
V ++G SSGIG EL QL+ +++L + G G+ + + LD+
Sbjct: 8 VLISGCSSGIGLELAVQLAHDHRQRYRVVATMRDLGKKGTLETAAGEALGQTLTVAQLDV 67
Query: 442 ANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTKC 621
+ S VA + G++D+LVNN GV SL + +++ N+ G V L +
Sbjct: 68 CSEES--VAQCLSCIQGGEVDVLVNNAGVGLVGPLEGLSLAAMQNVLDTNFFGAVRLVRA 125
Query: 622 VLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITVSNV 801
VLP M +++G I+ ++S MG+ + Y ASK AL GFF +L +L + I ++ V
Sbjct: 126 VLPGMKRRRKGHIVVISSVMGLQGVVFNEIYAASKFALEGFFESLAVQLLQF-NIFITLV 184
Query: 802 CPGPVKSNIVKNALTEEVTKTLGSDAD 882
PGPV ++ + L E+V+ T D D
Sbjct: 185 EPGPVATDF-EGKLLEQVSTTEFPDTD 210
>ref|XP_852048.1| PREDICTED: similar to follicular lymphoma variant translocation 1
[Canis familiaris].
Length = 509
Score = 89.0 bits (219), Expect = 7e-18
Identities = 55/172 (31%), Positives = 92/172 (53%), Gaps = 1/172 (0%)
Frame = +1
Query: 268 VTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDLAN 447
VTG SSGIG+ + + K G + L AR +L + K+ ++ I + +L + +D++
Sbjct: 144 VTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKEIEKHSINDKQVVLCISVDVSQ 203
Query: 448 RSSH-EVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTKCV 624
S E K ++ G +D+LVN G+S D + ++ LM VNYLG+V ++ V
Sbjct: 204 DYSQVENVIKQAQEKLGPVDMLVNCAGMSLSGKFEDLEVSTFERLMSVNYLGSVYPSRAV 263
Query: 625 LPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYP 780
+ M E++ G+I+ V+S G + Y +SK A+RG L+ E+ YP
Sbjct: 264 ITTMKERRVGRIVFVSSQAGQLGLFGFTAYSSSKFAIRGLAEALQMEVEIYP 315
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,027,480
Number of extensions: 1064062
Number of successful extensions: 2812
Number of sequences better than 1.0e-05: 60
Number of HSP's gapped: 2741
Number of HSP's successfully gapped: 60
Length of query: 347
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 243
Effective length of database: 15,407,560
Effective search space: 3744037080
Effective search space used: 3744037080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012716
(1043 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928783.1| PREDICTED: dehydrogenase/reductase SDR famil... 570 e-163
Alignment gi|XP_003132036.2| PREDICTED: dehydrogenase/reductase SDR famil... 103 2e-22
Alignment gi|XP_003123297.1| PREDICTED: LOW QUALITY PROTEIN: retinol dehy... 96 3e-20
Alignment gi|XP_001925948.1| PREDICTED: 3-ketodihydrosphingosine reductas... 92 5e-19
Alignment gi|XP_003129386.2| PREDICTED: estradiol 17-beta-dehydrogenase 1... 90 2e-18
Alignment gi|NP_001230551.1| hydroxysteroid (17-beta) dehydrogenase 13 [S... 90 2e-18
Alignment gi|XP_003123133.1| PREDICTED: hydroxysteroid 11-beta-dehydrogen... 89 3e-18
Alignment gi|NP_001230795.1| retinol dehydrogenase 16 (all-trans) [Sus sc... 87 2e-17
Alignment gi|NP_999413.1| corticosteroid 11-beta-dehydrogenase isozyme 1 ... 84 1e-16
Alignment gi|NP_001182297.1| epidermal retinol dehydrogenase 2 [Sus scrof... 80 2e-15
>ref|XP_001928783.1| PREDICTED: dehydrogenase/reductase SDR family member 7 [Sus scrofa].
Length = 339
Score = 570 bits (1469), Expect = e-163
Identities = 287/312 (91%), Positives = 288/312 (92%)
Frame = +1
Query: 106 MSWEXXXXXXXXXXXXXXXXXXXXXXXXDGDLTLLWAEWQGRRPEWELTDMVVWVTGASS 285
MSWE DGDLTLLWAEWQGRRPEWELTDMVVWVTGASS
Sbjct: 1 MSWELFLWLLALCVLLALVVQLLRFLRADGDLTLLWAEWQGRRPEWELTDMVVWVTGASS 60
Query: 286 GIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDLANRSSHEV 465
GIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDLANRSSHEV
Sbjct: 61 GIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDLANRSSHEV 120
Query: 466 ATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTKCVLPHMIEK 645
ATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTKCVLPHMIEK
Sbjct: 121 ATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTKCVLPHMIEK 180
Query: 646 KQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITVSNVCPGPVKSN 825
KQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITVSNVCPGPVKSN
Sbjct: 181 KQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITVSNVCPGPVKSN 240
Query: 826 IVKNALTEEVTKTLGSDADQSHKMATSRCARLMLIAMANDLKEVWIAEQPFLAMAYLWQY 1005
IVKNALTEEVTKTLGSDADQSHKMATSRCARLMLIAMANDLKEVWIAEQPFL+MAYLWQY
Sbjct: 241 IVKNALTEEVTKTLGSDADQSHKMATSRCARLMLIAMANDLKEVWIAEQPFLSMAYLWQY 300
Query: 1006 IPTWAWWLTSKI 1041
IPTWAWWLTSKI
Sbjct: 301 IPTWAWWLTSKI 312
>ref|XP_003132036.2| PREDICTED: dehydrogenase/reductase SDR family member 7C-like [Sus
scrofa].
Length = 311
Score = 103 bits (256), Expect = 2e-22
Identities = 63/189 (33%), Positives = 103/189 (54%), Gaps = 1/189 (0%)
Frame = +1
Query: 259 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGI-LKGKDILILPL 435
VV +T A SG+G+E G LVL + + L+ + + K ++ L
Sbjct: 39 VVVITDAISGLGKECARVFHTGGARLVLCGKNWERLQTLYDALISVADPSKTFTPKLVLL 98
Query: 436 DLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLT 615
DL++ S + K VL +G +DIL++N + + SL++ K++M+ NY G ++LT
Sbjct: 99 DLSDISCVQDVAKEVLDCYGCVDILISNASMKVKGPAHKISLELDKKIMDANYFGPITLT 158
Query: 616 KCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITVS 795
K +LP+MI ++ G+I+ VN+ G + P Y ASKHA GFF+ LR E+ + + VS
Sbjct: 159 KALLPNMISRRTGQIVLVNNIQGRLGIPFRTAYAASKHAALGFFDCLRAEVEEF-DVVVS 217
Query: 796 NVCPGPVKS 822
V P ++S
Sbjct: 218 TVSPTFIRS 226
>ref|XP_003123297.1| PREDICTED: LOW QUALITY PROTEIN: retinol dehydrogenase 8-like [Sus
scrofa].
Length = 332
Score = 96.3 bits (238), Expect = 3e-20
Identities = 68/212 (32%), Positives = 103/212 (48%), Gaps = 1/212 (0%)
Frame = +1
Query: 250 TDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILIL 429
T V ++G SSGIG EL QL++ +++L + G G+ + +
Sbjct: 24 TPRTVLISGCSSGIGLELAVQLARDPKQRYHVVATMRDLGKKGTLEAAAGEALGQTLTVA 83
Query: 430 PLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVS 609
LD+ S VA + G++D+LVNN GV SL + + + N+ G V
Sbjct: 84 QLDVC--SDESVAQCLSCIQGGEVDVLVNNAGVGLVGPLEGLSLAAMQNVFDTNFFGAVR 141
Query: 610 LTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGIT 789
L K VLP M ++QG I+ V+S MG+ + Y ASK A+ GFF +L +L + I
Sbjct: 142 LVKAVLPGMKRRRQGHIVVVSSVMGLQGVVFNEVYAASKFAIEGFFESLAVQLLQF-NIF 200
Query: 790 VSNVCPGPVKSNIVKNALTEEVTKTL-GSDAD 882
+S V PGPV + + L + T G+D D
Sbjct: 201 ISLVEPGPVATEFERKLLEQVSTAEFPGTDPD 232
>ref|XP_001925948.1| PREDICTED: 3-ketodihydrosphingosine reductase-like [Sus scrofa].
Length = 332
Score = 92.0 bits (227), Expect = 5e-19
Identities = 72/263 (27%), Positives = 122/263 (46%), Gaps = 31/263 (11%)
Frame = +1
Query: 262 VWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDL 441
V VTG SSGIG+ + + K G + L AR +L + K+ ++ I + +L + +D+
Sbjct: 35 VVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKEIEKHSINDKQVVLCISVDV 94
Query: 442 ANRSSH-EVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTK 618
+ S E K ++ G +D+LVN G+S D + ++ LM VNYLG+V ++
Sbjct: 95 SQDYSQVENVIKQAQEKLGPVDMLVNCAGMSLSGKFEDLEVSTFERLMSVNYLGSVYPSR 154
Query: 619 CVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATY------- 777
V+ M E++ G+I+ V+S G + Y +SK A+RG L+ E+ Y
Sbjct: 155 AVITTMKERRVGRIVFVSSQAGQLGLFGFTAYSSSKFAIRGLAEALQMEVKPYNVYVTVA 214
Query: 778 -------PGITVSN---------------VC-PGPVKSNIVKNALTEEVTKTLGSDADQS 888
PG N VC P V IVK+A+ ++GSD
Sbjct: 215 YPPDTDTPGFAEENKTKPLETRLISETTSVCKPEQVAKQIVKDAIQGNFNSSIGSD---G 271
Query: 889 HKMATSRCARLMLIAMANDLKEV 957
+ +++ C + ++ L++V
Sbjct: 272 YMLSSLTCGMAPVTSITEGLQQV 294
>ref|XP_003129386.2| PREDICTED: estradiol 17-beta-dehydrogenase 11-like [Sus scrofa].
Length = 313
Score = 90.1 bits (222), Expect = 2e-18
Identities = 67/216 (31%), Positives = 94/216 (43%), Gaps = 4/216 (1%)
Frame = +1
Query: 247 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILI 426
+T +V +TGA G+G ++ +KL LVL LE C G
Sbjct: 34 VTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKR----LGSKAHA 89
Query: 427 LPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTV 606
+D ++R + K V E G + ILVNN GV S T ++ EVN L
Sbjct: 90 FVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNILAHF 149
Query: 607 SLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATY--P 780
TK LP M++ G I+TV S G P YC+SK A GF L ELA
Sbjct: 150 WTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAALKRT 209
Query: 781 GITVSNVCPGPVKSNIVKNALTE--EVTKTLGSDAD 882
G+ + +CP + + +KN E + KT S+ +
Sbjct: 210 GVKTTCLCPNFINTGFIKNPRKEIDFIGKTCSSNTE 245
>ref|NP_001230551.1| hydroxysteroid (17-beta) dehydrogenase 13 [Sus scrofa].
Length = 300
Score = 89.7 bits (221), Expect = 2e-18
Identities = 65/198 (32%), Positives = 89/198 (44%), Gaps = 2/198 (1%)
Frame = +1
Query: 259 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLD 438
+V VTGA GIG ++ Y+ +K LVL LE C + G ++ D
Sbjct: 38 IVLVTGAGHGIGRKIAYEFAKRKSRLVLWDINKHGLEETAAECKKLGATTHAFVV----D 93
Query: 439 LANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTK 618
+NR + V +E G I I+VNN G + + T + EVN LG +TK
Sbjct: 94 CSNREEIYNSVNQVKKEVGDITIVVNNAGTIYPADLLSTKDEEITITFEVNILGHFWITK 153
Query: 619 CVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATY--PGITV 792
+LP M+ + G ++TV S G P YC+SK A GF L EL GI
Sbjct: 154 ALLPAMMSRNHGHVVTVASLCGHGVIPYLIPYCSSKFAAVGFHRALTAELEAVGKTGIKT 213
Query: 793 SNVCPGPVKSNIVKNALT 846
S +CP V + KN T
Sbjct: 214 SCLCPVFVNTGFTKNPST 231
>ref|XP_003123133.1| PREDICTED: hydroxysteroid 11-beta-dehydrogenase 1-like protein-like
[Sus scrofa].
Length = 293
Score = 89.4 bits (220), Expect = 3e-18
Identities = 57/169 (33%), Positives = 90/169 (53%)
Frame = +1
Query: 262 VWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDL 441
V +TGAS+G+GEEL Y ++LG LVL+A L++V C + G K + + D+
Sbjct: 38 VLLTGASAGVGEELAYHYARLGSHLVLTAHTEALLQKVVGNCRKLGAPK---VFYIAADM 94
Query: 442 ANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTKC 621
A+ E + L + G +D LV N + + S + L++VN++ V LT
Sbjct: 95 ASPDVPERVVQFALDKLGGLDYLVLNHLGAAPAGTRARSAQAIRWLLQVNFISYVQLTSL 154
Query: 622 VLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTEL 768
LP + + K G ++ V+S +G + S Y A+K AL FF++LR EL
Sbjct: 155 ALPSLTDSK-GSLVVVSSLLGRVPTSFSSPYSAAKFALDSFFDSLRREL 202
>ref|NP_001230795.1| retinol dehydrogenase 16 (all-trans) [Sus scrofa].
Length = 317
Score = 86.7 bits (213), Expect = 2e-17
Identities = 69/230 (30%), Positives = 116/230 (50%), Gaps = 5/230 (2%)
Frame = +1
Query: 220 WQGRRPEWE-LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLEN 396
WQ R L D V++TG SG G L QL G+ ++ + Q ++++++ +
Sbjct: 17 WQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSDR 76
Query: 397 GILKGKDILILPLDLANRSSHEVATKAVLQEFGKIDI--LVNNGGVSQRSLCVD--TSLD 564
+ + LD+ S A + V + G + LVNN G+S S + T D
Sbjct: 77 -------LETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQD 129
Query: 565 VYKELMEVNYLGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGF 744
K +++VN LG V +T +LP ++ K +G+++ V+S MG ++ GGYC SK+ + F
Sbjct: 130 FVK-ILDVNLLGMVDVTLQLLP-LVRKTRGRVVNVSSVMGRVSL-FGGGYCLSKYGVEAF 186
Query: 745 FNTLRTELATYPGITVSNVCPGPVKSNIVKNALTEEVTKTLGSDADQSHK 894
++LR EL +Y G+ V+ + PG K+N+ K + KT + A K
Sbjct: 187 SDSLRREL-SYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIK 235
>ref|NP_999413.1| corticosteroid 11-beta-dehydrogenase isozyme 1 [Sus scrofa].
Length = 292
Score = 84.0 bits (206), Expect = 1e-16
Identities = 60/178 (33%), Positives = 90/178 (50%)
Frame = +1
Query: 232 RPEWELTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKG 411
RPE L V VTGAS GIG E+ Y L+++G +V++AR + L++V LE G
Sbjct: 28 RPEM-LRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEETLKKVVSHSLELGASSA 86
Query: 412 KDILILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVN 591
+ D+ +L G +D+L+ N V + + + MEVN
Sbjct: 87 HYVAGTMEDMTFAEQFVAKAGKLL---GGLDMLILNHITQAFMTSVYDDIHLVRRSMEVN 143
Query: 592 YLGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTE 765
+L V L+ LP M+++ G I+ V+S G +A PL Y ASK AL GFF+++ E
Sbjct: 144 FLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSITKE 200
>ref|NP_001182297.1| epidermal retinol dehydrogenase 2 [Sus scrofa].
Length = 309
Score = 80.1 bits (196), Expect = 2e-15
Identities = 55/200 (27%), Positives = 92/200 (46%), Gaps = 2/200 (1%)
Frame = +1
Query: 235 PEWELTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGK 414
P ++ +V +TGA SG+G L + ++LG LVL + E ++ E G+
Sbjct: 34 PRKKVAGEIVLITGAGSGLGRLLALKFARLGSVLVLWDINQERNEETRKMVQEAGVAGA- 92
Query: 415 DILILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNY 594
D + R V +E G + IL+NN G+ +D ++ ++ ++VN+
Sbjct: 93 --YAYTCDCSQREDVYRVASQVKKEVGDVSILINNAGIVTGRKFLDCPDELMEKSLDVNF 150
Query: 595 LGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTL--RTEL 768
+ K LP MI G ++ ++S G+I YCASK A GF T+ T
Sbjct: 151 KAHLWTYKAFLPAMIANDHGHLVCISSSAGLIGVYGLADYCASKFAAFGFAETVFFETFA 210
Query: 769 ATYPGITVSNVCPGPVKSNI 828
+ GI + VCP +K+ +
Sbjct: 211 SKQKGIKTTIVCPFFIKTQM 230
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,376,379
Number of extensions: 665917
Number of successful extensions: 1780
Number of sequences better than 1.0e-05: 45
Number of HSP's gapped: 1728
Number of HSP's successfully gapped: 45
Length of query: 347
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 247
Effective length of database: 8,854,232
Effective search space: 2186995304
Effective search space used: 2186995304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012716
(1043 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079798.2| dehydrogenase/reductase SDR family member 7 pre... 454 e-128
Alignment gi|NP_001165583.1| dehydrogenase/reductase SDR family member 7B... 151 9e-37
Alignment gi|NP_663403.1| dehydrogenase/reductase SDR family member 7B is... 151 9e-37
Alignment gi|NP_001013031.2| dehydrogenase/reductase SDR family member 7C... 105 6e-23
Alignment gi|NP_001038216.1| corticosteroid 11-beta-dehydrogenase isozyme... 99 4e-21
Alignment gi|NP_032314.2| corticosteroid 11-beta-dehydrogenase isozyme 1 ... 99 4e-21
Alignment gi|NP_001025461.1| retinol dehydrogenase 8 [Mus musculus]. 98 9e-21
Alignment gi|NP_444492.1| estradiol 17-beta-dehydrogenase 11 [Mus musculu... 95 8e-20
Alignment gi|NP_001156958.1| 17-beta-hydroxysteroid dehydrogenase 13 isof... 91 1e-18
Alignment gi|NP_932147.2| 17-beta-hydroxysteroid dehydrogenase 13 isoform... 91 1e-18
>ref|NP_079798.2| dehydrogenase/reductase SDR family member 7 precursor [Mus musculus].
Length = 338
Score = 454 bits (1167), Expect = e-128
Identities = 225/312 (72%), Positives = 252/312 (80%)
Frame = +1
Query: 106 MSWEXXXXXXXXXXXXXXXXXXXXXXXXDGDLTLLWAEWQGRRPEWELTDMVVWVTGASS 285
MSWE D DLTLLWAEWQGRRPEWELTDMVVWVTGASS
Sbjct: 1 MSWELLLWLLALCALILPLVQLLRFLRADADLTLLWAEWQGRRPEWELTDMVVWVTGASS 60
Query: 286 GIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDLANRSSHEV 465
GIGEEL +QLSKLGVSLVLSARR QELERVKRRCLENG LK KDIL+LPLDL + SSHE
Sbjct: 61 GIGEELAFQLSKLGVSLVLSARRAQELERVKRRCLENGNLKEKDILVLPLDLTDTSSHEA 120
Query: 466 ATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTKCVLPHMIEK 645
ATKAVLQEFGKIDILVNNGG SQRSL ++T+LDV+KEL+ +NY+GTVSLTKCVLPHMIE+
Sbjct: 121 ATKAVLQEFGKIDILVNNGGRSQRSLVLETNLDVFKELINLNYIGTVSLTKCVLPHMIER 180
Query: 646 KQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITVSNVCPGPVKSN 825
KQGKI+TVNS GI + LS GYCASKHALRGFFN L +EL YPGIT NV PGPV+S+
Sbjct: 181 KQGKIVTVNSIAGIASVSLSSGYCASKHALRGFFNALHSELGQYPGITFCNVYPGPVQSD 240
Query: 826 IVKNALTEEVTKTLGSDADQSHKMATSRCARLMLIAMANDLKEVWIAEQPFLAMAYLWQY 1005
IVKNA TEEVTK++ ++ DQS+KM TSRC RLMLI+MANDLKEVWI++ P L AY+WQY
Sbjct: 241 IVKNAFTEEVTKSMRNNIDQSYKMPTSRCVRLMLISMANDLKEVWISDHPVLLGAYIWQY 300
Query: 1006 IPTWAWWLTSKI 1041
+PTWA WL K+
Sbjct: 301 MPTWAAWLNCKL 312
>ref|NP_001165583.1| dehydrogenase/reductase SDR family member 7B isoform 1 [Mus
musculus].
Length = 314
Score = 151 bits (381), Expect = 9e-37
Identities = 84/241 (34%), Positives = 135/241 (56%)
Frame = +1
Query: 247 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILI 426
L + VV VTGA+SG+G E G LVL R V+ LE + R + + +
Sbjct: 41 LRNAVVVVTGATSGLGRECAKVFHAAGAKLVLCGRNVKALEELSRELAGSSQGQTHQPFV 100
Query: 427 LPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTV 606
+ DLA+ + A +LQ FG +D+L+NN G+S R DT +DV +++ME+NY G V
Sbjct: 101 VTFDLADPGTIAAAAAEILQCFGYVDVLINNAGISYRGTISDTIVDVDRKVMEINYFGPV 160
Query: 607 SLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGI 786
+LTK +LP M+E+KQG I+ ++S G I+ P Y ASKHA + FF+ LR E+ I
Sbjct: 161 ALTKALLPSMVERKQGHIVAISSIQGKISIPFRSAYSASKHATQAFFDCLRAEMEE-ANI 219
Query: 787 TVSNVCPGPVKSNIVKNALTEEVTKTLGSDADQSHKMATSRCARLMLIAMANDLKEVWIA 966
V+ + PG + +N+ NA+T + ++ D + + + + A+ + A+ K+V +
Sbjct: 220 KVTVISPGYIHTNLSVNAVTADGSRYGALDKNTAQGRSAAEVAQDVFDAVGKKKKDVLLT 279
Query: 967 E 969
+
Sbjct: 280 D 280
>ref|NP_663403.1| dehydrogenase/reductase SDR family member 7B isoform 2 [Mus
musculus].
Length = 323
Score = 151 bits (381), Expect = 9e-37
Identities = 84/241 (34%), Positives = 135/241 (56%)
Frame = +1
Query: 247 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILI 426
L + VV VTGA+SG+G E G LVL R V+ LE + R + + +
Sbjct: 50 LRNAVVVVTGATSGLGRECAKVFHAAGAKLVLCGRNVKALEELSRELAGSSQGQTHQPFV 109
Query: 427 LPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTV 606
+ DLA+ + A +LQ FG +D+L+NN G+S R DT +DV +++ME+NY G V
Sbjct: 110 VTFDLADPGTIAAAAAEILQCFGYVDVLINNAGISYRGTISDTIVDVDRKVMEINYFGPV 169
Query: 607 SLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGI 786
+LTK +LP M+E+KQG I+ ++S G I+ P Y ASKHA + FF+ LR E+ I
Sbjct: 170 ALTKALLPSMVERKQGHIVAISSIQGKISIPFRSAYSASKHATQAFFDCLRAEMEE-ANI 228
Query: 787 TVSNVCPGPVKSNIVKNALTEEVTKTLGSDADQSHKMATSRCARLMLIAMANDLKEVWIA 966
V+ + PG + +N+ NA+T + ++ D + + + + A+ + A+ K+V +
Sbjct: 229 KVTVISPGYIHTNLSVNAVTADGSRYGALDKNTAQGRSAAEVAQDVFDAVGKKKKDVLLT 288
Query: 967 E 969
+
Sbjct: 289 D 289
>ref|NP_001013031.2| dehydrogenase/reductase SDR family member 7C precursor [Mus
musculus].
Length = 311
Score = 105 bits (262), Expect = 6e-23
Identities = 67/190 (35%), Positives = 103/190 (54%), Gaps = 2/190 (1%)
Frame = +1
Query: 259 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDIL--ILP 432
VV +T A SG+G+E G LVL + + LE + L + K ++
Sbjct: 39 VVVITDAISGLGKECARVFHAGGARLVLCGKNWEGLESLYAT-LTSVADPSKTFTPKLVL 97
Query: 433 LDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSL 612
LDL++ S + K VL +G +DIL+NN V + SL++ K++M+ NY G ++L
Sbjct: 98 LDLSDISCVQDVAKEVLDCYGCVDILINNASVKVKGPAHKISLELDKKIMDANYFGPITL 157
Query: 613 TKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITV 792
TK +LP+MI ++ G+I+ VN+ P Y ASKHA+ GFF+ LR E+ Y + V
Sbjct: 158 TKVLLPNMISRRTGQIVLVNNIQAKFGIPFRTAYAASKHAVMGFFDCLRAEVEEY-DVVV 216
Query: 793 SNVCPGPVKS 822
S V P ++S
Sbjct: 217 STVSPTFIRS 226
>ref|NP_001038216.1| corticosteroid 11-beta-dehydrogenase isozyme 1 [Mus musculus].
Length = 292
Score = 99.4 bits (246), Expect = 4e-21
Identities = 68/180 (37%), Positives = 99/180 (55%), Gaps = 1/180 (0%)
Frame = +1
Query: 232 RPEWELTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKG 411
RPE L V VTGAS GIG E+ Y LSK+G +VL+AR + L++V RCLE G
Sbjct: 28 RPEM-LQGKKVIVTGASKGIGREMAYHLSKMGAHVVLTARSEEGLQKVVSRCLELGAASA 86
Query: 412 KDILILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCV-DTSLDVYKELMEV 588
I D+ V ++ G +D+L+ N ++Q SL + + + +MEV
Sbjct: 87 HYIAGTMEDMTFAEQFIVKAGKLM---GGLDMLILN-HITQTSLSLFHDDIHSVRRVMEV 142
Query: 589 NYLGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTEL 768
N+L V ++ LP M+++ G I ++S G + P+ Y ASK AL GFF+T+RTEL
Sbjct: 143 NFLSYVVMSTAALP-MLKQSNGSIAVISSLAGKMTQPMIAPYSASKFALDGFFSTIRTEL 201
>ref|NP_032314.2| corticosteroid 11-beta-dehydrogenase isozyme 1 [Mus musculus].
Length = 292
Score = 99.4 bits (246), Expect = 4e-21
Identities = 68/180 (37%), Positives = 99/180 (55%), Gaps = 1/180 (0%)
Frame = +1
Query: 232 RPEWELTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKG 411
RPE L V VTGAS GIG E+ Y LSK+G +VL+AR + L++V RCLE G
Sbjct: 28 RPEM-LQGKKVIVTGASKGIGREMAYHLSKMGAHVVLTARSEEGLQKVVSRCLELGAASA 86
Query: 412 KDILILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCV-DTSLDVYKELMEV 588
I D+ V ++ G +D+L+ N ++Q SL + + + +MEV
Sbjct: 87 HYIAGTMEDMTFAEQFIVKAGKLM---GGLDMLILN-HITQTSLSLFHDDIHSVRRVMEV 142
Query: 589 NYLGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTEL 768
N+L V ++ LP M+++ G I ++S G + P+ Y ASK AL GFF+T+RTEL
Sbjct: 143 NFLSYVVMSTAALP-MLKQSNGSIAVISSLAGKMTQPMIAPYSASKFALDGFFSTIRTEL 201
>ref|NP_001025461.1| retinol dehydrogenase 8 [Mus musculus].
Length = 317
Score = 98.2 bits (243), Expect = 9e-21
Identities = 71/210 (33%), Positives = 107/210 (50%), Gaps = 3/210 (1%)
Frame = +1
Query: 262 VWVTGASSGIGEELVYQLS---KLGVSLVLSARRVQELERVKRRCLENGILKGKDILILP 432
V ++G SSGIG EL QL+ + +V + R + + E ++ G GK + ++
Sbjct: 8 VLISGCSSGIGLELALQLAHDPRQRYQVVATMRDLGKKEPLEAAA---GEALGKTLSVVQ 64
Query: 433 LDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSL 612
LD+ N S + E G++D+LVNN GV SL + + N+ G V L
Sbjct: 65 LDVCNDESVTDCLSHI--EGGQVDVLVNNAGVGLVGPLEGLSLATMQSVFNTNFFGAVRL 122
Query: 613 TKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITV 792
K VLP M ++QG I+ V+S MG+ + Y ASK AL GFF +L +L + I +
Sbjct: 123 VKAVLPGMKRRRQGHIVVVSSVMGLQGVMFNDVYAASKFALEGFFESLAIQLRQF-NIFI 181
Query: 793 SNVCPGPVKSNIVKNALTEEVTKTLGSDAD 882
S V PGPV ++ + L +V+K D D
Sbjct: 182 SMVEPGPVTTDF-EGKLLAQVSKAEFPDTD 210
>ref|NP_444492.1| estradiol 17-beta-dehydrogenase 11 [Mus musculus].
Length = 298
Score = 95.1 bits (235), Expect = 8e-20
Identities = 65/198 (32%), Positives = 89/198 (44%), Gaps = 2/198 (1%)
Frame = +1
Query: 259 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLD 438
+V +TGA GIG Y+ +KL LVL +E +C + G ++ D
Sbjct: 38 IVLITGAGHGIGRLTAYEFAKLNTKLVLWDINKNGIEETAAKCRKLGAQAHPFVV----D 93
Query: 439 LANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTK 618
+ R A K V +E G + ILVNN GV + T ++ EVN L TK
Sbjct: 94 CSQREEIYSAAKKVKEEVGDVSILVNNAGVVYTADLFATQDPQIEKTFEVNVLAHFWTTK 153
Query: 619 CVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATY--PGITV 792
LP M++ G I+TV S G P YC+SK A GF L ELA G+
Sbjct: 154 AFLPVMMKNNHGHIVTVASAAGHTVVPFLLAYCSSKFAAVGFHRALTDELAALGRTGVRT 213
Query: 793 SNVCPGPVKSNIVKNALT 846
S +CP + + +KN T
Sbjct: 214 SCLCPNFINTGFIKNPST 231
>ref|NP_001156958.1| 17-beta-hydroxysteroid dehydrogenase 13 isoform 1 [Mus musculus].
Length = 300
Score = 90.9 bits (224), Expect = 1e-18
Identities = 67/217 (30%), Positives = 100/217 (46%), Gaps = 10/217 (4%)
Frame = +1
Query: 247 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILI 426
+T V +TGA GIG Y+ +K LVL + +E +C + G + + +
Sbjct: 34 VTGQTVLITGAGHGIGRLTAYEFAKQKSRLVLWDINKRGVEETADKCRKLGAV----VHV 89
Query: 427 LPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTV 606
+D +NR+ + V +E G ++I+VNN G + + + + EVN LG
Sbjct: 90 FVVDCSNRAEIYNSVDQVKREVGDVEIVVNNAGAIYPADLLSAKDEEITKTFEVNILGHF 149
Query: 607 SLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATY--P 780
+ K +LP M+ + G I+TV S G P YC+SK A GF L EL T
Sbjct: 150 WIIKALLPSMLRRNSGHIVTVASVCGHGVIPYLIPYCSSKFAAVGFHRALTAELDTLGKT 209
Query: 781 GITVSNVCPGPVKSNIVKNALT--------EEVTKTL 867
GI S +CP V + KN T EEV ++L
Sbjct: 210 GIQTSCLCPVFVNTGFTKNPSTRLWPVLEPEEVARSL 246
>ref|NP_932147.2| 17-beta-hydroxysteroid dehydrogenase 13 isoform 2 [Mus musculus].
Length = 304
Score = 90.9 bits (224), Expect = 1e-18
Identities = 67/217 (30%), Positives = 100/217 (46%), Gaps = 10/217 (4%)
Frame = +1
Query: 247 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILI 426
+T V +TGA GIG Y+ +K LVL + +E +C + G + + +
Sbjct: 34 VTGQTVLITGAGHGIGRLTAYEFAKQKSRLVLWDINKRGVEETADKCRKLGAV----VHV 89
Query: 427 LPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTV 606
+D +NR+ + V +E G ++I+VNN G + + + + EVN LG
Sbjct: 90 FVVDCSNRAEIYNSVDQVKREVGDVEIVVNNAGAIYPADLLSAKDEEITKTFEVNILGHF 149
Query: 607 SLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATY--P 780
+ K +LP M+ + G I+TV S G P YC+SK A GF L EL T
Sbjct: 150 WIIKALLPSMLRRNSGHIVTVASVCGHGVIPYLIPYCSSKFAAVGFHRALTAELDTLGKT 209
Query: 781 GITVSNVCPGPVKSNIVKNALT--------EEVTKTL 867
GI S +CP V + KN T EEV ++L
Sbjct: 210 GIQTSCLCPVFVNTGFTKNPSTRLWPVLEPEEVARSL 246
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,310,246
Number of extensions: 889940
Number of successful extensions: 2451
Number of sequences better than 1.0e-05: 54
Number of HSP's gapped: 2387
Number of HSP's successfully gapped: 54
Length of query: 347
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 245
Effective length of database: 12,553,887
Effective search space: 3075702315
Effective search space used: 3075702315
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012716
(1043 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057113.1| dehydrogenase/reductase SDR family member 7 pre... 498 e-141
Alignment gi|NP_056325.2| dehydrogenase/reductase SDR family member 7B [H... 145 8e-35
Alignment gi|NP_001207422.1| dehydrogenase/reductase SDR family member 7C... 106 3e-23
Alignment gi|NP_001099041.1| dehydrogenase/reductase SDR family member 7C... 106 4e-23
Alignment gi|NP_057329.2| estradiol 17-beta-dehydrogenase 11 [Homo sapien... 100 2e-21
Alignment gi|NP_001193670.1| corticosteroid 11-beta-dehydrogenase isozyme... 93 5e-19
Alignment gi|NP_861420.1| corticosteroid 11-beta-dehydrogenase isozyme 1 ... 93 5e-19
Alignment gi|NP_005516.1| corticosteroid 11-beta-dehydrogenase isozyme 1 ... 93 5e-19
Alignment gi|NP_835236.2| 17-beta-hydroxysteroid dehydrogenase 13 isoform... 92 8e-19
Alignment gi|NP_056540.1| retinol dehydrogenase 8 [Homo sapiens]. 92 8e-19
>ref|NP_057113.1| dehydrogenase/reductase SDR family member 7 precursor [Homo sapiens].
Length = 339
Score = 498 bits (1281), Expect = e-141
Identities = 237/284 (83%), Positives = 264/284 (92%)
Frame = +1
Query: 190 DGDLTLLWAEWQGRRPEWELTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELE 369
DGDLTLLWAEWQGRRPEWELTDMVVWVTGASSGIGEEL YQLSKLGVSLVLSARRV ELE
Sbjct: 29 DGDLTLLWAEWQGRRPEWELTDMVVWVTGASSGIGEELAYQLSKLGVSLVLSARRVHELE 88
Query: 370 RVKRRCLENGILKGKDILILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCV 549
RVKRRCLENG LK KDIL+LPLDL + SHE ATKAVLQEFG+IDILVNNGG+SQRSLC+
Sbjct: 89 RVKRRCLENGNLKEKDILVLPLDLTDTGSHEAATKAVLQEFGRIDILVNNGGMSQRSLCM 148
Query: 550 DTSLDVYKELMEVNYLGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKH 729
DTSLDVY++L+E+NYLGTVSLTKCVLPHMIE+KQGKI+TVNS +GII+ PLS GYCASKH
Sbjct: 149 DTSLDVYRKLIELNYLGTVSLTKCVLPHMIERKQGKIVTVNSILGIISVPLSIGYCASKH 208
Query: 730 ALRGFFNTLRTELATYPGITVSNVCPGPVKSNIVKNALTEEVTKTLGSDADQSHKMATSR 909
ALRGFFN LRTELATYPGI VSN+CPGPV+SNIV+N+L EVTKT+G++ DQSHKM TSR
Sbjct: 209 ALRGFFNGLRTELATYPGIIVSNICPGPVQSNIVENSLAGEVTKTIGNNGDQSHKMTTSR 268
Query: 910 CARLMLIAMANDLKEVWIAEQPFLAMAYLWQYIPTWAWWLTSKI 1041
C RLMLI+MANDLKEVWI+EQPFL + YLWQY+PTWAWW+T+K+
Sbjct: 269 CVRLMLISMANDLKEVWISEQPFLLVTYLWQYMPTWAWWITNKM 312
>ref|NP_056325.2| dehydrogenase/reductase SDR family member 7B [Homo sapiens].
Length = 325
Score = 145 bits (365), Expect = 8e-35
Identities = 86/243 (35%), Positives = 135/243 (55%), Gaps = 2/243 (0%)
Frame = +1
Query: 247 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDI-- 420
L + VV +TGA+SG+G+E G LVL R LE + R + K +
Sbjct: 50 LRNAVVVITGATSGLGKECAKVFYAAGAKLVLCGRNGGALEELIRELTASHATKVQTHKP 109
Query: 421 LILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLG 600
++ DL + + A +LQ FG +DILVNN G+S R +DT++DV K +ME NY G
Sbjct: 110 YLVTFDLTDSGAIVAAAAEILQCFGYVDILVNNAGISYRGTIMDTTVDVDKRVMETNYFG 169
Query: 601 TVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYP 780
V+LTK +LP MI+++QG I+ ++S G ++ P Y ASKHA + FF+ LR E+ Y
Sbjct: 170 PVALTKALLPSMIKRRQGHIVAISSIQGKMSIPFRSAYAASKHATQAFFDCLRAEMEQYE 229
Query: 781 GITVSNVCPGPVKSNIVKNALTEEVTKTLGSDADQSHKMATSRCARLMLIAMANDLKEVW 960
I V+ + PG + +N+ NA+T + ++ D + + A+ +L A+ K+V
Sbjct: 230 -IEVTVISPGYIHTNLSVNAITADGSRYGVMDTTTAQGRSPVEVAQDVLAAVGKKKKDVI 288
Query: 961 IAE 969
+A+
Sbjct: 289 LAD 291
>ref|NP_001207422.1| dehydrogenase/reductase SDR family member 7C isoform 1 [Homo
sapiens].
Length = 312
Score = 106 bits (265), Expect = 3e-23
Identities = 65/190 (34%), Positives = 101/190 (53%), Gaps = 2/190 (1%)
Frame = +1
Query: 259 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDIL--ILP 432
VV +T A SG+G+E G LVL + + LE + + + ++
Sbjct: 39 VVVITDAISGLGKECARVFHTGGARLVLCGKNWERLENLYDALISVADPSKQTFTPKLVL 98
Query: 433 LDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSL 612
LDL++ S K VL +G +DIL+NN V + SL++ K++M+ NY G ++L
Sbjct: 99 LDLSDISCVPDVAKEVLDCYGCVDILINNASVKVKGPAHKISLELDKKIMDANYFGPITL 158
Query: 613 TKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITV 792
TK +LP+MI ++ G+I+ VN+ G P Y ASKHA GFF+ LR E+ Y + +
Sbjct: 159 TKALLPNMISRRTGQIVLVNNIQGKFGIPFRTTYAASKHAALGFFDCLRAEVEEY-DVVI 217
Query: 793 SNVCPGPVKS 822
S V P ++S
Sbjct: 218 STVSPTFIRS 227
>ref|NP_001099041.1| dehydrogenase/reductase SDR family member 7C isoform 2 [Homo
sapiens].
Length = 311
Score = 106 bits (264), Expect = 4e-23
Identities = 66/189 (34%), Positives = 101/189 (53%), Gaps = 1/189 (0%)
Frame = +1
Query: 259 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGI-LKGKDILILPL 435
VV +T A SG+G+E G LVL + + LE + + K ++ L
Sbjct: 39 VVVITDAISGLGKECARVFHTGGARLVLCGKNWERLENLYDALISVADPSKTFTPKLVLL 98
Query: 436 DLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLT 615
DL++ S K VL +G +DIL+NN V + SL++ K++M+ NY G ++LT
Sbjct: 99 DLSDISCVPDVAKEVLDCYGCVDILINNASVKVKGPAHKISLELDKKIMDANYFGPITLT 158
Query: 616 KCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITVS 795
K +LP+MI ++ G+I+ VN+ G P Y ASKHA GFF+ LR E+ Y + +S
Sbjct: 159 KALLPNMISRRTGQIVLVNNIQGKFGIPFRTTYAASKHAALGFFDCLRAEVEEY-DVVIS 217
Query: 796 NVCPGPVKS 822
V P ++S
Sbjct: 218 TVSPTFIRS 226
>ref|NP_057329.2| estradiol 17-beta-dehydrogenase 11 [Homo sapiens].
Length = 300
Score = 100 bits (250), Expect = 2e-21
Identities = 70/202 (34%), Positives = 94/202 (46%), Gaps = 2/202 (0%)
Frame = +1
Query: 247 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILI 426
+T +V +TGA GIG Y+ +KL LVL LE +C G+ G +
Sbjct: 34 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKC--KGL--GAKVHT 89
Query: 427 LPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTV 606
+D +NR + K V E G + ILVNN GV S T ++ EVN L
Sbjct: 90 FVVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHF 149
Query: 607 SLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELAT--YP 780
TK LP M + G I+TV S G ++ P YC+SK A GF TL ELA
Sbjct: 150 WTTKAFLPAMTKNNHGHIVTVASAAGHVSVPFLLAYCSSKFAAVGFHKTLTDELAALQIT 209
Query: 781 GITVSNVCPGPVKSNIVKNALT 846
G+ + +CP V + +KN T
Sbjct: 210 GVKTTCLCPNFVNTGFIKNPST 231
>ref|NP_001193670.1| corticosteroid 11-beta-dehydrogenase isozyme 1 [Homo sapiens].
Length = 292
Score = 92.8 bits (229), Expect = 5e-19
Identities = 65/178 (36%), Positives = 94/178 (52%)
Frame = +1
Query: 232 RPEWELTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKG 411
RPE L V VTGAS GIG E+ Y L+K+G +V++AR + L++V CLE G
Sbjct: 28 RPEM-LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASA 86
Query: 412 KDILILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVN 591
I D+ + VA L G +D+L+ N + + ++ MEVN
Sbjct: 87 HYIAGTMEDM-TFAEQFVAQAGKL--MGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVN 143
Query: 592 YLGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTE 765
+L V LT LP M+++ G I+ V+S G +A P+ Y ASK AL GFF+++R E
Sbjct: 144 FLSYVVLTVAALP-MLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKE 200
>ref|NP_861420.1| corticosteroid 11-beta-dehydrogenase isozyme 1 [Homo sapiens].
Length = 292
Score = 92.8 bits (229), Expect = 5e-19
Identities = 65/178 (36%), Positives = 94/178 (52%)
Frame = +1
Query: 232 RPEWELTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKG 411
RPE L V VTGAS GIG E+ Y L+K+G +V++AR + L++V CLE G
Sbjct: 28 RPEM-LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASA 86
Query: 412 KDILILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVN 591
I D+ + VA L G +D+L+ N + + ++ MEVN
Sbjct: 87 HYIAGTMEDM-TFAEQFVAQAGKL--MGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVN 143
Query: 592 YLGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTE 765
+L V LT LP M+++ G I+ V+S G +A P+ Y ASK AL GFF+++R E
Sbjct: 144 FLSYVVLTVAALP-MLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKE 200
>ref|NP_005516.1| corticosteroid 11-beta-dehydrogenase isozyme 1 [Homo sapiens].
Length = 292
Score = 92.8 bits (229), Expect = 5e-19
Identities = 65/178 (36%), Positives = 94/178 (52%)
Frame = +1
Query: 232 RPEWELTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKG 411
RPE L V VTGAS GIG E+ Y L+K+G +V++AR + L++V CLE G
Sbjct: 28 RPEM-LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASA 86
Query: 412 KDILILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVN 591
I D+ + VA L G +D+L+ N + + ++ MEVN
Sbjct: 87 HYIAGTMEDM-TFAEQFVAQAGKL--MGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVN 143
Query: 592 YLGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTE 765
+L V LT LP M+++ G I+ V+S G +A P+ Y ASK AL GFF+++R E
Sbjct: 144 FLSYVVLTVAALP-MLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKE 200
>ref|NP_835236.2| 17-beta-hydroxysteroid dehydrogenase 13 isoform A [Homo sapiens].
Length = 300
Score = 92.0 bits (227), Expect = 8e-19
Identities = 64/198 (32%), Positives = 93/198 (46%), Gaps = 2/198 (1%)
Frame = +1
Query: 259 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLD 438
+V +TGA GIG + Y+ +K LVL + +E C + G+ ++ D
Sbjct: 38 IVLITGAGHGIGRQTTYEFAKRQSILVLWDINKRGVEETAAECRKLGVTAHAYVV----D 93
Query: 439 LANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTK 618
+NR + V +E G + I+VNN G + + T + + EVN LG +TK
Sbjct: 94 CSNREEIYRSLNQVKKEVGDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITK 153
Query: 619 CVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATY--PGITV 792
+LP M+E+ G I+TV S G P YC+SK A GF L +EL GI
Sbjct: 154 ALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHRGLTSELQALGKTGIKT 213
Query: 793 SNVCPGPVKSNIVKNALT 846
S +CP V + KN T
Sbjct: 214 SCLCPVFVNTGFTKNPST 231
>ref|NP_056540.1| retinol dehydrogenase 8 [Homo sapiens].
Length = 311
Score = 92.0 bits (227), Expect = 8e-19
Identities = 66/214 (30%), Positives = 106/214 (49%), Gaps = 4/214 (1%)
Frame = +1
Query: 262 VWVTGASSGIGEELVYQLS---KLGVSLVLSARRVQELERVKRRCLENGILKGKDILILP 432
V ++G SSGIG EL QL+ K +V + R + + E ++ G G+ + +
Sbjct: 8 VLISGCSSGIGLELAVQLAHDPKKRYQVVATMRDLGKKETLEAAA---GEALGQTLTVAQ 64
Query: 433 LDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSL 612
LD+ + S + G++D+LVNN G+ SL + + + N+ G V L
Sbjct: 65 LDVCSDESVAQCLSCIQ---GEVDVLVNNAGMGLVGPLEGLSLAAMQNVFDTNFFGAVRL 121
Query: 613 TKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITV 792
K VLP M ++QG I+ ++S MG+ + Y ASK AL GFF +L +L + I +
Sbjct: 122 VKAVLPGMKRRRQGHIVVISSVMGLQGVIFNDVYAASKFALEGFFESLAIQLLQF-NIFI 180
Query: 793 SNVCPGPVKSNIVKNALTE-EVTKTLGSDADQSH 891
S V PGPV + L + + + G+D + H
Sbjct: 181 SLVEPGPVVTEFEGKLLAQVSMAEFPGTDPETLH 214
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,390,516
Number of extensions: 1054823
Number of successful extensions: 2721
Number of sequences better than 1.0e-05: 59
Number of HSP's gapped: 2650
Number of HSP's successfully gapped: 59
Length of query: 347
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 244
Effective length of database: 14,901,872
Effective search space: 3636056768
Effective search space used: 3636056768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012716
(1043 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 478 e-132
>Sscrofa_Chr01
|| Length = 315321322
Score = 478 bits (241), Expect = e-132
Identities = 241/241 (100%)
Strand = Plus / Minus
Query: 499 atcgacattctggtcaacaatggtggagtatcccagcgttctttgtgtgtggacaccagc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210282446 atcgacattctggtcaacaatggtggagtatcccagcgttctttgtgtgtggacaccagc 210282387
Query: 559 ctggatgtctacaaggagctaatggaagttaactacttagggacggtgtccttgacaaag 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210282386 ctggatgtctacaaggagctaatggaagttaactacttagggacggtgtccttgacaaag 210282327
Query: 619 tgtgttctgcctcacatgattgagaagaagcaaggaaaaatcattactgtgaatagcttc 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210282326 tgtgttctgcctcacatgattgagaagaagcaaggaaaaatcattactgtgaatagcttc 210282267
Query: 679 atgggtattatagctgcacccctttctggtggatattgtgccagcaaacatgctcttcgg 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210282266 atgggtattatagctgcacccctttctggtggatattgtgccagcaaacatgctcttcgg 210282207
Query: 739 g 739
|
Sbjct: 210282206 g 210282206
Score = 464 bits (234), Expect = e-128
Identities = 234/234 (100%)
Strand = Plus / Minus
Query: 5 actcgcgcagttgcgcggctcagaccaggtccggagggttcgtgggtcgctctagctatc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210292963 actcgcgcagttgcgcggctcagaccaggtccggagggttcgtgggtcgctctagctatc 210292904
Query: 65 tctattagctgtctccgcaaagcagggcgtgcgcggcggtgatgagctgggagctgtttc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210292903 tctattagctgtctccgcaaagcagggcgtgcgcggcggtgatgagctgggagctgtttc 210292844
Query: 125 tctggctgctggcactatgcgtgctgctcgcgctcgtggtgcagctcctgcgcttcctgc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210292843 tctggctgctggcactatgcgtgctgctcgcgctcgtggtgcagctcctgcgcttcctgc 210292784
Query: 185 gggcagatggcgacctgaccctgctgtgggccgagtggcaggggcgacgcccag 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210292783 gggcagatggcgacctgaccctgctgtgggccgagtggcaggggcgacgcccag 210292730
Score = 357 bits (180), Expect = 8e-96
Identities = 183/184 (99%)
Strand = Plus / Minus
Query: 860 agactctaggcagtgatgcagaccaatcccacaagatggcaaccagccgctgtgcacggc 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210278824 agactctaggcagtgatgcagaccaatcccacaagatggcaaccagccgctgtgcacggc 210278765
Query: 920 tgatgttaattgccatggccaatgatttgaaagaagtttggattgcggagcagccttttt 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210278764 tgatgttaattgccatggccaatgatttgaaagaagtttggattgcggagcagccttttt 210278705
Query: 980 tggcaatggcatatttatggcaatatataccaacctgggcctggtggctgaccagcaaaa 1039
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210278704 tgtcaatggcatatttatggcaatatataccaacctgggcctggtggctgaccagcaaaa 210278645
Query: 1040 tagg 1043
||||
Sbjct: 210278644 tagg 210278641
Score = 307 bits (155), Expect = 7e-81
Identities = 155/155 (100%)
Strand = Plus / Minus
Query: 237 agaatgggagctaactgatatggtggtgtgggtgactggagcatccagtgggattggcga 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210286191 agaatgggagctaactgatatggtggtgtgggtgactggagcatccagtgggattggcga 210286132
Query: 297 ggagctggtttaccagctctctaaactaggagtttctctcgtgctgtcagccagaagagt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210286131 ggagctggtttaccagctctctaaactaggagtttctctcgtgctgtcagccagaagagt 210286072
Query: 357 gcaggagctggaaagggtgaaaagaagatgccttg 391
|||||||||||||||||||||||||||||||||||
Sbjct: 210286071 gcaggagctggaaagggtgaaaagaagatgccttg 210286037
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 748 aataccctccgaactgaacttgccacatacccaggtataacagtttctaatgtttgccca 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210280155 aataccctccgaactgaacttgccacatacccaggtataacagtttctaatgtttgccca 210280096
Query: 808 ggacctgtaaaatcaaatattgtgaagaatgccctaactgaagaagtcacaaag 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210280095 ggacctgtaaaatcaaatattgtgaagaatgccctaactgaagaagtcacaaag 210280042
Score = 214 bits (108), Expect = 7e-53
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 391 gagaatggcattttgaaaggaaaagatatactaattttgccccttgacctggctaataga 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210283448 gagaatggcattttgaaaggaaaagatatactaattttgccccttgacctggctaataga 210283389
Query: 451 agttcgcatgaagtggctactaaagctgttctccaggagtttggtaaa 498
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210283388 agttcgcatgaagtggctactaaagctgttctccaggagtttggtaaa 210283341
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,999,339
Number of extensions: 156
Number of successful extensions: 156
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 6
Length of query: 1043
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1022
Effective length of database: 2,808,413,156
Effective search space: 2870198245432
Effective search space used: 2870198245432
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)