Animal-Genome cDNA 20110601C-012978


Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012978
         (1170 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_851024.1| PREDICTED: similar to 3-beta-hydroxysteroid-del...   453   e-127
Alignment   gi|XP_853729.1| PREDICTED: similar to 3-beta-hydroxysteroid-del...   433   e-121
Alignment   gi|XP_533979.2| PREDICTED: similar to cysteine and histidine-ri...   297   1e-80
Alignment   gi|XP_862935.1| PREDICTED: similar to 3-beta-hydroxysteroid-del...   207   2e-53
Alignment   gi|XP_534113.2| PREDICTED: similar to emopamil binding related ...    89   8e-18

>ref|XP_851024.1| PREDICTED: similar to
           3-beta-hydroxysteroid-delta(8),delta(7)-isomerase
           (Cholestenol delta-isomerase) (Delta8-delta7 sterol
           isomerase) (D8-D7 sterol isomerase) (Emopamil-binding
           protein) isoform 1 [Canis familiaris].
          Length = 228

 Score =  453 bits (1166), Expect = e-127
 Identities = 205/228 (89%), Positives = 221/228 (96%)
 Frame = +2

Query: 188 MTTNASPMHPYWPRHLRLDNFVPNDCPTWHILAGLFSASGVLVVTTWLLSGRAAVVPLST 367
           MTTNASP+HPYWPRHLRLDNFVPNDCPTWH+LAGLFS SGVLVVTTWLLSGRAAV+PL T
Sbjct: 1   MTTNASPLHPYWPRHLRLDNFVPNDCPTWHLLAGLFSVSGVLVVTTWLLSGRAAVIPLGT 60

Query: 368 WRRLSLCWFAVCGFVHLVIEGWFCLYHEELLGDQAFLSQLWKEYAKGDSRYILNDNFTIC 547
           WRRLSLCWFAVCGF+H+VIEGWF LYHE+LLGDQAFLSQLWKEYAKGDSRYIL+DNFTIC
Sbjct: 61  WRRLSLCWFAVCGFIHMVIEGWFSLYHEDLLGDQAFLSQLWKEYAKGDSRYILSDNFTIC 120

Query: 548 METITACLWGPLSLWVVIAFLRQQPHRFVLQLVVSVGQIYGDVLYFLTEHRDGFQHGELG 727
           METITACLWGPLSLWVVIAFLRQQP RF+LQLVVSVGQIYGDVLYFLTEHRDGFQHGE+G
Sbjct: 121 METITACLWGPLSLWVVIAFLRQQPLRFILQLVVSVGQIYGDVLYFLTEHRDGFQHGEVG 180

Query: 728 HPIYFWFYFVFMNALWLVLPGILVLDSIKQLSHAQRMLDSKASRAKSK 871
           HP+YFWFYFVFMN LWLVLPGILVLDS+KQL+HAQ +LD+K ++AKSK
Sbjct: 181 HPLYFWFYFVFMNGLWLVLPGILVLDSVKQLAHAQSVLDAKGTKAKSK 228


>ref|XP_853729.1| PREDICTED: similar to
           3-beta-hydroxysteroid-delta(8),delta(7)-isomerase
           (Cholestenol delta-isomerase) (Delta8-delta7 sterol
           isomerase) (D8-D7 sterol isomerase) (Emopamil-binding
           protein) [Canis familiaris].
          Length = 228

 Score =  433 bits (1113), Expect = e-121
 Identities = 198/228 (86%), Positives = 216/228 (94%)
 Frame = +2

Query: 188 MTTNASPMHPYWPRHLRLDNFVPNDCPTWHILAGLFSASGVLVVTTWLLSGRAAVVPLST 367
           MTTNASP+HPYWPR LRLDNFVPNDCPTWH+LAGLFS SGVLVVTTWLLSGRAAV+ L T
Sbjct: 1   MTTNASPLHPYWPRQLRLDNFVPNDCPTWHLLAGLFSVSGVLVVTTWLLSGRAAVILLGT 60

Query: 368 WRRLSLCWFAVCGFVHLVIEGWFCLYHEELLGDQAFLSQLWKEYAKGDSRYILNDNFTIC 547
           W+RLSLCWFAVCGF+H+VIEGWF LYH++LLGDQAFLSQLWKEYAKGDSRYIL+DNFTIC
Sbjct: 61  WQRLSLCWFAVCGFIHMVIEGWFSLYHKDLLGDQAFLSQLWKEYAKGDSRYILSDNFTIC 120

Query: 548 METITACLWGPLSLWV

Animal-Genome cDNA 20110601C-012978


Animal-Genome cDNA 20110601C-012978


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012978
         (1170 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001029672.1| 3-beta-hydroxysteroid-Delta(8),Delta(7)-isom...   437   e-123
Alignment   gi|NP_001192668.1| emopamil-binding protein-like [Bos taurus].        90   4e-18
Alignment   gi|XP_002691837.1| PREDICTED: emopamil binding related protein,...    90   4e-18

>ref|NP_001029672.1| 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase [Bos taurus].
          Length = 230

 Score =  437 bits (1124), Expect = e-123
 Identities = 200/230 (86%), Positives = 216/230 (93%)
 Frame = +2

Query: 188 MTTNASPMHPYWPRHLRLDNFVPNDCPTWHILAGLFSASGVLVVTTWLLSGRAAVVPLST 367
           MTTN SPMHPYWPRHLRLDNFVPND PTWHILAGLFS SGVLVV TWLLSGRAAVVPL T
Sbjct: 1   MTTNTSPMHPYWPRHLRLDNFVPNDYPTWHILAGLFSVSGVLVVATWLLSGRAAVVPLGT 60

Query: 368 WRRLSLCWFAVCGFVHLVIEGWFCLYHEELLGDQAFLSQLWKEYAKGDSRYILNDNFTIC 547
           WRRLSLCWFAVCGF+HLVIEGWF LYH +LLGDQA LSQLWKEYAKGDSRYILNDNF IC
Sbjct: 61  WRRLSLCWFAVCGFIHLVIEGWFSLYHADLLGDQAILSQLWKEYAKGDSRYILNDNFMIC 120

Query: 548 METITACLWGPLSLWVVIAFLRQQPHRFVLQLVVSVGQIYGDVLYFLTEHRDGFQHGELG 727
           MET+TA LWGPLSLWVVIAFLR QP RFVLQLVVS+GQ+YGDVLYFLTE+RDGFQHGELG
Sbjct: 121 METVTAYLWGPLSLWVVIAFLRHQPLRFVLQLVVSMGQVYGDVLYFLTEYRDGFQHGELG 180

Query: 728 HPIYFWFYFVFMNALWLVLPGILVLDSIKQLSHAQRMLDSKASRAKSKQN 877
           HP+YFWFYFVF+N+LWLV+PG+L+LDSIKQL+HAQ +LD+KA +AKSKQN
Sbjct: 181 HPLYFWFYFVFLNSLWLVVPGLLILDSIKQLAHAQSILDAKAPKAKSKQN 230


>ref|NP_001192668.1| emopamil-binding protein-like [Bos taurus].
          Length = 206

 Score = 89.7 bits (221), Expect = 4e-18
 Identities = 55/201 (27%), Positives = 98/201 (48%), Gaps = 6/201 (2%)
 Frame = +2

Query: 287 GLFSASGVLVVTTWLLSGRAAVVPLSTWR----RLSLCWFAVCGFVHLVIEGWFCLYHE- 451
           G  +   +L+  + L  G A  + L   R    R  L W      VH  +EG +      
Sbjct: 8   GAAAGGSLLLCASLLAVGCALGLRLGRGRGAADRGLLAWLCFNALVHFALEGPYVYLSMV 67

Query: 452 -ELLGDQAFLSQLWKEYAKGDSRYILNDNFTICMETITACLWGPLSLWVVIAFLRQQPHR 628
             +    A ++ LWKEY K D+R++  D   + +E +T  L G L+L +V A ++++ +R
Sbjct: 68  GNITHSDALIASLWKEYGKADARWLYFDPTIVSVEILTVVLGGSLALVLVYAIVKEKHYR 127

Query: 629 FVLQLVVSVGQIYGDVLYFLTEHRDGFQHGELGHPIYFWFYFVFMNALWLVLPGILVLDS 808
             +Q+ + V ++YG  + F  +   G  +      +YFW Y VF N +W+++PG+L+  S
Sbjct: 128 HFVQITLCVCELYGGWMTFCPDWLMGSPNLNTNSWLYFWVYLVFFNGVWVLIPGLLLWQS 187

Query: 809 IKQLSHAQRMLDSKASRAKSK 871
             +L    + +  K S ++ K
Sbjct: 188 WVEL----KKMHHKGSNSRKK 204


>ref|XP_002691837.1| PREDICTED: emopamil binding related protein, delta8-delta7 sterol
           isomerase-like [Bos taurus].
          Length = 206

 Score = 89.7 bits (221), Expect = 4e-18
 Identities = 55/201 (27%), Positives = 98/201 (48%), Gaps = 6/201 (2%)
 Frame = +2

Query: 287 GLFSASGVLVVTTWLLSGRAAVVPLSTWR----RLSLCWFAVCGFVHLVIEGWFCLYHE- 451
           G  +   +L+  + L  G A  + L   R    R  L W      VH  +EG +      
Sbjct: 8   GAAAGGSLLLCASLLAVGCALGLRLGRGRGAADRGLLAWLCFNALVHFALEGPYVYLSMV 67

Query: 452 -ELLGDQAFLSQLWKEYAKGDSRYILNDNFTICMETITACLWGPLSLWVVIAFLRQQPHR 628
             +    A ++ LWKEY K D+R++  D   + +E +T  L G L+L +V A ++++ +R
Sbjct: 68  GNITHSDALIASLWKEYGKADARWLYFDPTIVSVEILTVVLGGSLALVLVYAIVKEKHYR 127

Query: 629 FVLQLVVSVGQIYGDVLYFLTEHRDGFQHGELGHPIYFWFYFVFMNALWLVLPGILVLDS 808
             +Q+ + V ++YG  + F  +   G  +      +YFW Y VF N +W+++PG+L+  S
Sbjct: 128 HFVQITLCVCELYGGWMTFCPDWLMGSPNLNTNSWLYFWVYLVFFNGVWVLIPGLLLWQS 187

Query: 809 IKQLSHAQRMLDSKASRAKSK 871
             +L    + +  K S ++ K
Sbjct: 188 WVEL----KKMHHKGSNSRKK 204


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,708,078
Number of extensions: 1061515
Number of successful extensions: 3626
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3624
Number of HSP's successfully gapped: 3
Length of query: 390
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 286
Effective length of database: 14,240,222
Effective search space: 4072703492
Effective search space used: 4072703492
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
VIAFLRQQPHRFVLQLVVSVGQIYGDVLYFLTEHRDGFQHGELG 727 ETITACLW PLSLWVVIAFL QQP RFVLQL+VSVGQIYGDVLYFLTEHRDGFQHGELG Sbjct: 121 TETITACLWRPLSLWVVIAFLLQQPLRFVLQLMVSVGQIYGDVLYFLTEHRDGFQHGELG 180 Query: 728 HPIYFWFYFVFMNALWLVLPGILVLDSIKQLSHAQRMLDSKASRAKSK 871 HP+YFWFY VFMN+LWLVLPGILVLDS+KQL+HAQ +LD+K ++AKSK Sbjct: 181 HPLYFWFYCVFMNSLWLVLPGILVLDSVKQLAHAQSVLDAKGTKAKSK 228 >ref|XP_533979.2| PREDICTED: similar to cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1 [Canis familiaris]. Length = 642 Score = 297 bits (760), Expect = 1e-80 Identities = 135/155 (87%), Positives = 142/155 (91%) Frame = +2 Query: 188 MTTNASPMHPYWPRHLRLDNFVPNDCPTWHILAGLFSASGVLVVTTWLLSGRAAVVPLST 367 MTTNAS HPYWPRHLRLDNFVPNDCPTWH+LA LFS SGVLV TTWLLSG A V+PL T Sbjct: 1 MTTNASSSHPYWPRHLRLDNFVPNDCPTWHLLASLFSVSGVLVATTWLLSGSAVVMPLGT 60 Query: 368 WRRLSLCWFAVCGFVHLVIEGWFCLYHEELLGDQAFLSQLWKEYAKGDSRYILNDNFTIC 547 WRRLSLCWFAVCGF+H+VIEGWF LYHE+LLGDQAFLSQLWKEYAKGDSRYIL+DNFTIC Sbjct: 61 WRRLSLCWFAVCGFIHMVIEGWFSLYHEDLLGDQAFLSQLWKEYAKGDSRYILSDNFTIC 120 Query: 548 METITACLWGPLSLWVVIAFLRQQPHRFVLQLVVS 652 ME ITACLWGPLS WVVIAFLRQQP F+LQLVVS Sbjct: 121 MEAITACLWGPLSRWVVIAFLRQQPLSFLLQLVVS 155 >ref|XP_862935.1| PREDICTED: similar to 3-beta-hydroxysteroid-delta(8),delta(7)-isomerase (Cholestenol delta-isomerase) (Delta8-delta7 sterol isomerase) (D8-D7 sterol isomerase) (Emopamil-binding protein) isoform 2 [Canis familiaris]. Length = 108 Score = 207 bits (526), Expect = 2e-53 Identities = 95/108 (87%), Positives = 104/108 (96%) Frame = +2 Query: 548 METITACLWGPLSLWVVIAFLRQQPHRFVLQLVVSVGQIYGDVLYFLTEHRDGFQHGELG 727 METITACLWGPLSLWVVIAFLRQQP RF+LQLVVSVGQIYGDVLYFLTEHRDGFQHGE+G Sbjct: 1 METITACLWGPLSLWVVIAFLRQQPLRFILQLVVSVGQIYGDVLYFLTEHRDGFQHGEVG 60 Query: 728 HPIYFWFYFVFMNALWLVLPGILVLDSIKQLSHAQRMLDSKASRAKSK 871 HP+YFWFYFVFMN LWLVLPGILVLDS+KQL+HAQ +LD+K ++AKSK Sbjct: 61 HPLYFWFYFVFMNGLWLVLPGILVLDSVKQLAHAQSVLDAKGTKAKSK 108 >ref|XP_534113.2| PREDICTED: similar to emopamil binding related protein, delta8-delta7 sterol isomerase [Canis familiaris]. Length = 198 Score = 89.0 bits (219), Expect = 8e-18 Identities = 52/177 (29%), Positives = 93/177 (52%), Gaps = 6/177 (3%) Frame = +2 Query: 308 VLVVTTWLLSGRAAVVPLSTWR----RLSLCWFAVCGFVHLVIEGWFCL--YHEELLGDQ 469 +L+ + LL+G A + L R R L W VHL +EG F + + + Sbjct: 7 LLLCASLLLAGCALGLRLGRGRGAADRAVLAWLCYDALVHLALEGPFVYLSFAGSVADSE 66 Query: 470 AFLSQLWKEYAKGDSRYILNDNFTICMETITACLWGPLSLWVVIAFLRQQPHRFVLQLVV 649 ++ LWKEY K D+R++ D + +E +T L G L+L +V A + ++ +R +Q+ + Sbjct: 67 GLIASLWKEYGKADARWLYFDPTIVSLEVLTVVLDGSLALVLVYAIVTEKYYRHFIQVTL 126 Query: 650 SVGQIYGDVLYFLTEHRDGFQHGELGHPIYFWFYFVFMNALWLVLPGILVLDSIKQL 820 V ++YG + F+ + G + +YF Y VF N++W+++PG+L+ S +L Sbjct: 127 CVCELYGGWMTFVPDWLVGSPNLNTDDWLYFGVYLVFFNSVWVLIPGLLLCQSWVEL 183 Database: RefSeq49_CP.fasta Posted date: Oct 17, 2011 1:42 PM Number of letters in database: 18,874,504 Number of sequences in database: 33,336 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33336 Number of Hits to DB: 42,356,264 Number of extensions: 1078552 Number of successful extensions: 3562 Number of sequences better than 1.0e-05: 5 Number of HSP's gapped: 3559 Number of HSP's successfully gapped: 5 Length of query: 390 Length of database: 18,874,504 Length adjustment: 105 Effective length of query: 285 Effective length of database: 15,374,224 Effective search space: 4381653840 Effective search space used: 4381653840 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012978
         (1170 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001161118.1| 3-beta-hydroxysteroid-Delta(8),Delta(7)-isom...   489   e-139
Alignment   gi|XP_003131007.1| PREDICTED: emopamil-binding protein-like iso...    95   9e-20

>ref|NP_001161118.1| 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase [Sus scrofa].
          Length = 230

 Score =  489 bits (1260), Expect = e-139
 Identities = 230/230 (100%), Positives = 230/230 (100%)
 Frame = +2

Query: 188 MTTNASPMHPYWPRHLRLDNFVPNDCPTWHILAGLFSASGVLVVTTWLLSGRAAVVPLST 367
           MTTNASPMHPYWPRHLRLDNFVPNDCPTWHILAGLFSASGVLVVTTWLLSGRAAVVPLST
Sbjct: 1   MTTNASPMHPYWPRHLRLDNFVPNDCPTWHILAGLFSASGVLVVTTWLLSGRAAVVPLST 60

Query: 368 WRRLSLCWFAVCGFVHLVIEGWFCLYHEELLGDQAFLSQLWKEYAKGDSRYILNDNFTIC 547
           WRRLSLCWFAVCGFVHLVIEGWFCLYHEELLGDQAFLSQLWKEYAKGDSRYILNDNFTIC
Sbjct: 61  WRRLSLCWFAVCGFVHLVIEGWFCLYHEELLGDQAFLSQLWKEYAKGDSRYILNDNFTIC 120

Query: 548 METITACLWGPLSLWVVIAFLRQQPHRFVLQLVVSVGQIYGDVLYFLTEHRDGFQHGELG 727
           METITACLWGPLSLWVVIAFLRQQPHRFVLQLVVSVGQIYGDVLYFLTEHRDGFQHGELG
Sbjct: 121 METITACLWGPLSLWVVIAFLRQQPHRFVLQLVVSVGQIYGDVLYFLTEHRDGFQHGELG 180

Query: 728 HPIYFWFYFVFMNALWLVLPGILVLDSIKQLSHAQRMLDSKASRAKSKQN 877
           HPIYFWFYFVFMNALWLVLPGILVLDSIKQLSHAQRMLDSKASRAKSKQN
Sbjct: 181 HPIYFWFYFVFMNALWLVLPGILVLDSIKQLSHAQRMLDSKASRAKSKQN 230


>ref|XP_003131007.1| PREDICTED: emopamil-binding protein-like isoform 1 [Sus scrofa].
          Length = 206

 Score = 94.7 bits (234), Expect = 9e-20
 Identities = 58/195 (29%), Positives = 105/195 (53%), Gaps = 9/195 (4%)
 Frame = +2

Query: 263 CPTWHILAGLFSASGVLVVTTWLLSGRAAV-VPLSTWR----RLSLCWFAVCGFVHLVIE 427
           C  W + +   +A G L++T  LL+   A+ + L   R    R +L W      VH  +E
Sbjct: 2   CAGWELGS---AAGGSLLLTAALLAVSCALGLRLGRGRGAADRGALAWLCFDALVHFALE 58

Query: 428 GWFCLYHEELLGD----QAFLSQLWKEYAKGDSRYILNDNFTICMETITACLWGPLSLWV 595
           G F   +  L+G+     A ++ LWKEY K D+R++ +D   + +E +T  L G L+L +
Sbjct: 59  GPFV--YLSLVGNITDSDALIASLWKEYGKADARWLTSDPTIVALEILTVVLDGSLALVL 116

Query: 596 VIAFLRQQPHRFVLQLVVSVGQIYGDVLYFLTEHRDGFQHGELGHPIYFWFYFVFMNALW 775
           + A ++++ +R  +Q+ + V ++YG  + F  +   G  +    + +YFW Y VF N +W
Sbjct: 117 IYAIVKEKYYRHFVQITLCVCELYGGWMTFCPDWLLGSPNLSTNNWLYFWVYLVFFNGVW 176

Query: 776 LVLPGILVLDSIKQL 820
           +++PG+L+  S  +L
Sbjct: 177 VLIPGLLLWQSWVEL 191


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,383,777
Number of extensions: 703954
Number of successful extensions: 2359
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2359
Number of HSP's successfully gapped: 2
Length of query: 390
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 289
Effective length of database: 8,829,335
Effective search space: 2551677815
Effective search space used: 2551677815
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012978
         (1170 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_031924.1| 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomera...   384   e-107
Alignment   gi|NP_080874.2| emopamil-binding protein-like [Mus musculus].         95   1e-19

>ref|NP_031924.1| 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase [Mus musculus].
          Length = 230

 Score =  384 bits (987), Expect = e-107
 Identities = 177/230 (76%), Positives = 200/230 (86%)
 Frame = +2

Query: 188 MTTNASPMHPYWPRHLRLDNFVPNDCPTWHILAGLFSASGVLVVTTWLLSGRAAVVPLST 367
           MTTN  P+HPYWPRHL+LDNFVPND PT HIL GLFS SG L+V TWLLS RA+VVPL  
Sbjct: 1   MTTNTVPLHPYWPRHLKLDNFVPNDLPTSHILVGLFSISGGLIVITWLLSSRASVVPLGA 60

Query: 368 WRRLSLCWFAVCGFVHLVIEGWFCLYHEELLGDQAFLSQLWKEYAKGDSRYILNDNFTIC 547
            RRL+LCWFAVC F+HLVIEGWF LY+  LL DQAFLSQLWKEY+KGDSRYIL+D+F +C
Sbjct: 61  GRRLALCWFAVCTFIHLVIEGWFSLYNGILLEDQAFLSQLWKEYSKGDSRYILSDSFVVC 120

Query: 548 METITACLWGPLSLWVVIAFLRQQPHRFVLQLVVSVGQIYGDVLYFLTEHRDGFQHGELG 727
           MET+TACLWGPLSLWVVIAFLRQQP RFVLQLVVS+GQIYGDVLYFLTE  +G QHGE+G
Sbjct: 121 METVTACLWGPLSLWVVIAFLRQQPFRFVLQLVVSMGQIYGDVLYFLTELHEGLQHGEIG 180

Query: 728 HPIYFWFYFVFMNALWLVLPGILVLDSIKQLSHAQRMLDSKASRAKSKQN 877
           HP+YFWFYFVF+NA+WLV+P ILVLD+IK L+ AQ +LDSK  + KSK N
Sbjct: 181 HPVYFWFYFVFLNAVWLVIPSILVLDAIKHLTSAQSVLDSKVMKIKSKHN 230


>ref|NP_080874.2| emopamil-binding protein-like [Mus musculus].
          Length = 206

 Score = 94.7 bits (234), Expect = 1e-19
 Identities = 57/188 (30%), Positives = 94/188 (50%), Gaps = 6/188 (3%)
 Frame = +2

Query: 275 HILAGLFSASGVLVVTTWLLSGRAAVVPLSTWR----RLSLCWFAVCGFVHLVIEGWFCL 442
           H   G  + S +L+ +  L  G A  + L   R    R  L W      VH V+EG F  
Sbjct: 4   HWALGPEAGSSLLLCSALLAVGCALGLRLGRGRSAVERWVLAWLCYDSLVHFVLEGAFVY 63

Query: 443 YH--EELLGDQAFLSQLWKEYAKGDSRYILNDNFTICMETITACLWGPLSLWVVIAFLRQ 616
                 +   Q  ++ LWKEY K D+R++ +D   + +E +T  L G L+L ++ A +++
Sbjct: 64  LSIVGNVADSQGLIASLWKEYGKADTRWLYSDPTVVSLEILTVVLDGLLALVLIYAIVKE 123

Query: 617 QPHRFVLQLVVSVGQIYGDVLYFLTEHRDGFQHGELGHPIYFWFYFVFMNALWLVLPGIL 796
           + +R  +Q+V+ V ++YG  + F  E   G         +Y W Y VF N LW+++PG+L
Sbjct: 124 KYYRHFVQIVLCVCELYGCWMTFFPEWLVGSPSLNTSSWLYLWVYLVFFNGLWVLIPGLL 183

Query: 797 VLDSIKQL 820
           +  S  +L
Sbjct: 184 LWQSWVEL 191


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,365,267
Number of extensions: 897355
Number of successful extensions: 3143
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3139
Number of HSP's successfully gapped: 2
Length of query: 390
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 287
Effective length of database: 12,523,851
Effective search space: 3594345237
Effective search space used: 3594345237
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012978
         (1170 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_006570.1| 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomera...   444   e-125
Alignment   gi|NP_115954.1| emopamil-binding protein-like [Homo sapiens].         89   1e-17

>ref|NP_006570.1| 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase [Homo sapiens].
          Length = 230

 Score =  444 bits (1142), Expect = e-125
 Identities = 202/230 (87%), Positives = 219/230 (95%)
 Frame = +2

Query: 188 MTTNASPMHPYWPRHLRLDNFVPNDCPTWHILAGLFSASGVLVVTTWLLSGRAAVVPLST 367
           MTTNA P+HPYWP+HLRLDNFVPND PTWHILAGLFS +GVLVVTTWLLSGRAAVVPL T
Sbjct: 1   MTTNAGPLHPYWPQHLRLDNFVPNDRPTWHILAGLFSVTGVLVVTTWLLSGRAAVVPLGT 60

Query: 368 WRRLSLCWFAVCGFVHLVIEGWFCLYHEELLGDQAFLSQLWKEYAKGDSRYILNDNFTIC 547
           WRRLSLCWFAVCGF+HLVIEGWF LY+E+LLGDQAFLSQLWKEYAKGDSRYIL DNFT+C
Sbjct: 61  WRRLSLCWFAVCGFIHLVIEGWFVLYYEDLLGDQAFLSQLWKEYAKGDSRYILGDNFTVC 120

Query: 548 METITACLWGPLSLWVVIAFLRQQPHRFVLQLVVSVGQIYGDVLYFLTEHRDGFQHGELG 727
           METITACLWGPLSLWVVIAFLRQ P RF+LQLVVSVGQIYGDVLYFLTEHRDGFQHGELG
Sbjct: 121 METITACLWGPLSLWVVIAFLRQHPLRFILQLVVSVGQIYGDVLYFLTEHRDGFQHGELG 180

Query: 728 HPIYFWFYFVFMNALWLVLPGILVLDSIKQLSHAQRMLDSKASRAKSKQN 877
           HP+YFWFYFVFMNALWLVLPG+LVLD++K L+HAQ  LD+KA++AKSK+N
Sbjct: 181 HPLYFWFYFVFMNALWLVLPGVLVLDAVKHLTHAQSTLDAKATKAKSKKN 230


>ref|NP_115954.1| emopamil-binding protein-like [Homo sapiens].
          Length = 206

 Score = 88.6 bits (218), Expect = 1e-17
 Identities = 51/171 (29%), Positives = 91/171 (53%), Gaps = 4/171 (2%)
 Frame = +2

Query: 374 RLSLCWFAVCGFVHLVIEGWFCLYHEELLGDQA----FLSQLWKEYAKGDSRYILNDNFT 541
           R +L W      VH  +EG F   +  L+G+ A     ++ LWKEY K D+R++  D   
Sbjct: 41  RGALIWLCYDALVHFALEGPFV--YLSLVGNVANSDGLIASLWKEYGKADARWVYFDPTI 98

Query: 542 ICMETITACLWGPLSLWVVIAFLRQQPHRFVLQLVVSVGQIYGDVLYFLTEHRDGFQHGE 721
           + +E +T  L G L+L+++ A ++++ +R  LQ+ + V ++YG  + FL E      +  
Sbjct: 99  VSVEILTVALDGSLALFLIYAIVKEKYYRHFLQITLCVCELYGCWMTFLPEWLTRSPNLN 158

Query: 722 LGHPIYFWFYFVFMNALWLVLPGILVLDSIKQLSHAQRMLDSKASRAKSKQ 874
             + +Y W Y  F N +W+++PG+L+  S  +L   ++M   + S  K  Q
Sbjct: 159 TSNWLYCWLYLFFFNGVWVLIPGLLLWQSWLEL---KKMHQKETSSVKKFQ 206


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,596,334
Number of extensions: 1062050
Number of successful extensions: 3526
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3521
Number of HSP's successfully gapped: 2
Length of query: 390
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 286
Effective length of database: 14,868,908
Effective search space: 4252507688
Effective search space used: 4252507688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012978
         (1170 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_ChrX                                                          739   0.0  

>Sscrofa_ChrX 
||          Length = 144288218

 Score =  739 bits (373), Expect = 0.0
 Identities = 373/373 (100%)
 Strand = Plus / Minus

                                                                            
Query: 117      ggtttttcctctttctttgttctcctttctacatatccatacacagcccacagctgtcag 176
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47626069 ggtttttcctctttctttgttctcctttctacatatccatacacagcccacagctgtcag 47626010

                                                                            
Query: 177      ccgacaaagacatgaccaccaacgccagccccatgcatccatactggcctcggcacctga 236
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47626009 ccgacaaagacatgaccaccaacgccagccccatgcatccatactggcctcggcacctga 47625950

                                                                            
Query: 237      ggctggacaactttgtgcctaatgactgccccacttggcatatcctggctggcctcttct 296
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47625949 ggctggacaactttgtgcctaatgactgccccacttggcatatcctggctggcctcttct 47625890

                                                                            
Query: 297      ccgcctctggagtcttagtcgtcactacctggctgttgtcaggtcgtgctgcggtcgtcc 356
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47625889 ccgcctctggagtcttagtcgtcactacctggctgttgtcaggtcgtgctgcggtcgtcc 47625830

                                                                            
Query: 357      cactgagcacttggcggagactgtccttgtgctggtttgcagtctgtgggttcgttcact 416
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47625829 cactgagcacttggcggagactgtccttgtgctggtttgcagtctgtgggttcgttcact 47625770

                                                                            
Query: 417      tggtgattgagggctggttctgtctctaccacgaggagcttcttggagaccaagccttct 476
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47625769 tggtgattgagggctggttctgtctctaccacgaggagcttcttggagaccaagccttct 47625710

                             
Query: 477      tatctcaactctg 489
                |||||||||||||
Sbjct: 47625709 tatctcaactctg 47625697



 Score =  672 bits (339), Expect = 0.0
 Identities = 339/339 (100%)
 Strand = Plus / Minus

                                                                            
Query: 656      ggtcagatatacggggatgtgctctatttcctgacagagcaccgtgacggattccagcac 715
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47619949 ggtcagatatacggggatgtgctctatttcctgacagagcaccgtgacggattccagcac 47619890

                                                                            
Query: 716      ggggagctgggccacccaatctacttctggttttactttgtcttcatgaatgctctgtgg 775
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47619889 ggggagctgggccacccaatctacttctggttttactttgtcttcatgaatgctctgtgg 47619830

                                                                            
Query: 776      ctggtgctgcccggaatccttgtgcttgattcgataaagcaactcagtcacgcccagagg 835
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47619829 ctggtgctgcccggaatccttgtgcttgattcgataaagcaactcagtcacgcccagagg 47619770

                                                                            
Query: 836      atgctggactccaaagcctccagagccaagagcaagcaaaactaatgagtgatgaactgg 895
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47619769 atgctggactccaaagcctccagagccaagagcaagcaaaactaatgagtgatgaactgg 47619710

                                                                            
Query: 896      gcttgaacactggccgttgaggaactcgccacctgtgtccagtccttgctcctacagatt 955
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47619709 gcttgaacactggccgttgaggaactcgccacctgtgtccagtccttgctcctacagatt 47619650

                                                       
Query: 956      ggaaggaccaatcgaattgatctgtcaaactcgggctga 994
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 47619649 ggaaggaccaatcgaattgatctgtcaaactcgggctga 47619611



 Score =  264 bits (133), Expect = 1e-67
 Identities = 133/133 (100%)
 Strand = Plus / Minus

                                                                            
Query: 526      gaatgataacttcaccatctgcatggagaccatcaccgcctgcctctggggaccactcag 585
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47621335 gaatgataacttcaccatctgcatggagaccatcaccgcctgcctctggggaccactcag 47621276

                                                                            
Query: 586      cctatgggtggtgatcgcctttctccgccagcagccccaccgctttgtcctccagctggt 645
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47621275 cctatgggtggtgatcgcctttctccgccagcagccccaccgctttgtcctccagctggt 47621216

                             
Query: 646      ggtctctgtgggt 658
                |||||||||||||
Sbjct: 47621215 ggtctctgtgggt 47621203



 Score =  234 bits (118), Expect = 9e-59
 Identities = 118/118 (100%)
 Strand = Plus / Minus

                                                                            
Query: 2        ataaggcgaggaaaccgtgaagggatgggtaagaatcacggctctctcggaccctgcgag 61
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47627411 ataaggcgaggaaaccgtgaagggatgggtaagaatcacggctctctcggaccctgcgag 47627352

                                                                          
Query: 62       ctagcctagagagacctgggaggctgtgggagaagccgccgcaaccgcgctgctgggt 119
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47627351 ctagcctagagagacctgggaggctgtgggagaagccgccgcaaccgcgctgctgggt 47627294



 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 38/38 (100%)
 Strand = Plus / Minus

                                                      
Query: 489      ggaaggaatatgccaagggagacagccgatacatcctg 526
                ||||||||||||||||||||||||||||||||||||||
Sbjct: 47621503 ggaaggaatatgccaagggagacagccgatacatcctg 47621466


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,153,847
Number of extensions: 186
Number of successful extensions: 186
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 5
Length of query: 1170
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1149
Effective length of database: 2,808,413,156
Effective search space: 3226866716244
Effective search space used: 3226866716244
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)