Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012978
(1170 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851024.1| PREDICTED: similar to 3-beta-hydroxysteroid-del... 453 e-127
Alignment gi|XP_853729.1| PREDICTED: similar to 3-beta-hydroxysteroid-del... 433 e-121
Alignment gi|XP_533979.2| PREDICTED: similar to cysteine and histidine-ri... 297 1e-80
Alignment gi|XP_862935.1| PREDICTED: similar to 3-beta-hydroxysteroid-del... 207 2e-53
Alignment gi|XP_534113.2| PREDICTED: similar to emopamil binding related ... 89 8e-18
>ref|XP_851024.1| PREDICTED: similar to
3-beta-hydroxysteroid-delta(8),delta(7)-isomerase
(Cholestenol delta-isomerase) (Delta8-delta7 sterol
isomerase) (D8-D7 sterol isomerase) (Emopamil-binding
protein) isoform 1 [Canis familiaris].
Length = 228
Score = 453 bits (1166), Expect = e-127
Identities = 205/228 (89%), Positives = 221/228 (96%)
Frame = +2
Query: 188 MTTNASPMHPYWPRHLRLDNFVPNDCPTWHILAGLFSASGVLVVTTWLLSGRAAVVPLST 367
MTTNASP+HPYWPRHLRLDNFVPNDCPTWH+LAGLFS SGVLVVTTWLLSGRAAV+PL T
Sbjct: 1 MTTNASPLHPYWPRHLRLDNFVPNDCPTWHLLAGLFSVSGVLVVTTWLLSGRAAVIPLGT 60
Query: 368 WRRLSLCWFAVCGFVHLVIEGWFCLYHEELLGDQAFLSQLWKEYAKGDSRYILNDNFTIC 547
WRRLSLCWFAVCGF+H+VIEGWF LYHE+LLGDQAFLSQLWKEYAKGDSRYIL+DNFTIC
Sbjct: 61 WRRLSLCWFAVCGFIHMVIEGWFSLYHEDLLGDQAFLSQLWKEYAKGDSRYILSDNFTIC 120
Query: 548 METITACLWGPLSLWVVIAFLRQQPHRFVLQLVVSVGQIYGDVLYFLTEHRDGFQHGELG 727
METITACLWGPLSLWVVIAFLRQQP RF+LQLVVSVGQIYGDVLYFLTEHRDGFQHGE+G
Sbjct: 121 METITACLWGPLSLWVVIAFLRQQPLRFILQLVVSVGQIYGDVLYFLTEHRDGFQHGEVG 180
Query: 728 HPIYFWFYFVFMNALWLVLPGILVLDSIKQLSHAQRMLDSKASRAKSK 871
HP+YFWFYFVFMN LWLVLPGILVLDS+KQL+HAQ +LD+K ++AKSK
Sbjct: 181 HPLYFWFYFVFMNGLWLVLPGILVLDSVKQLAHAQSVLDAKGTKAKSK 228
>ref|XP_853729.1| PREDICTED: similar to
3-beta-hydroxysteroid-delta(8),delta(7)-isomerase
(Cholestenol delta-isomerase) (Delta8-delta7 sterol
isomerase) (D8-D7 sterol isomerase) (Emopamil-binding
protein) [Canis familiaris].
Length = 228
Score = 433 bits (1113), Expect = e-121
Identities = 198/228 (86%), Positives = 216/228 (94%)
Frame = +2
Query: 188 MTTNASPMHPYWPRHLRLDNFVPNDCPTWHILAGLFSASGVLVVTTWLLSGRAAVVPLST 367
MTTNASP+HPYWPR LRLDNFVPNDCPTWH+LAGLFS SGVLVVTTWLLSGRAAV+ L T
Sbjct: 1 MTTNASPLHPYWPRQLRLDNFVPNDCPTWHLLAGLFSVSGVLVVTTWLLSGRAAVILLGT 60
Query: 368 WRRLSLCWFAVCGFVHLVIEGWFCLYHEELLGDQAFLSQLWKEYAKGDSRYILNDNFTIC 547
W+RLSLCWFAVCGF+H+VIEGWF LYH++LLGDQAFLSQLWKEYAKGDSRYIL+DNFTIC
Sbjct: 61 WQRLSLCWFAVCGFIHMVIEGWFSLYHKDLLGDQAFLSQLWKEYAKGDSRYILSDNFTIC 120
Query: 548 METITACLWGPLSLWV
Animal-Genome cDNA 20110601C-012978
Animal-Genome cDNA 20110601C-012978
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012978
(1170 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029672.1| 3-beta-hydroxysteroid-Delta(8),Delta(7)-isom... 437 e-123
Alignment gi|NP_001192668.1| emopamil-binding protein-like [Bos taurus]. 90 4e-18
Alignment gi|XP_002691837.1| PREDICTED: emopamil binding related protein,... 90 4e-18
>ref|NP_001029672.1| 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase [Bos taurus].
Length = 230
Score = 437 bits (1124), Expect = e-123
Identities = 200/230 (86%), Positives = 216/230 (93%)
Frame = +2
Query: 188 MTTNASPMHPYWPRHLRLDNFVPNDCPTWHILAGLFSASGVLVVTTWLLSGRAAVVPLST 367
MTTN SPMHPYWPRHLRLDNFVPND PTWHILAGLFS SGVLVV TWLLSGRAAVVPL T
Sbjct: 1 MTTNTSPMHPYWPRHLRLDNFVPNDYPTWHILAGLFSVSGVLVVATWLLSGRAAVVPLGT 60
Query: 368 WRRLSLCWFAVCGFVHLVIEGWFCLYHEELLGDQAFLSQLWKEYAKGDSRYILNDNFTIC 547
WRRLSLCWFAVCGF+HLVIEGWF LYH +LLGDQA LSQLWKEYAKGDSRYILNDNF IC
Sbjct: 61 WRRLSLCWFAVCGFIHLVIEGWFSLYHADLLGDQAILSQLWKEYAKGDSRYILNDNFMIC 120
Query: 548 METITACLWGPLSLWVVIAFLRQQPHRFVLQLVVSVGQIYGDVLYFLTEHRDGFQHGELG 727
MET+TA LWGPLSLWVVIAFLR QP RFVLQLVVS+GQ+YGDVLYFLTE+RDGFQHGELG
Sbjct: 121 METVTAYLWGPLSLWVVIAFLRHQPLRFVLQLVVSMGQVYGDVLYFLTEYRDGFQHGELG 180
Query: 728 HPIYFWFYFVFMNALWLVLPGILVLDSIKQLSHAQRMLDSKASRAKSKQN 877
HP+YFWFYFVF+N+LWLV+PG+L+LDSIKQL+HAQ +LD+KA +AKSKQN
Sbjct: 181 HPLYFWFYFVFLNSLWLVVPGLLILDSIKQLAHAQSILDAKAPKAKSKQN 230
>ref|NP_001192668.1| emopamil-binding protein-like [Bos taurus].
Length = 206
Score = 89.7 bits (221), Expect = 4e-18
Identities = 55/201 (27%), Positives = 98/201 (48%), Gaps = 6/201 (2%)
Frame = +2
Query: 287 GLFSASGVLVVTTWLLSGRAAVVPLSTWR----RLSLCWFAVCGFVHLVIEGWFCLYHE- 451
G + +L+ + L G A + L R R L W VH +EG +
Sbjct: 8 GAAAGGSLLLCASLLAVGCALGLRLGRGRGAADRGLLAWLCFNALVHFALEGPYVYLSMV 67
Query: 452 -ELLGDQAFLSQLWKEYAKGDSRYILNDNFTICMETITACLWGPLSLWVVIAFLRQQPHR 628
+ A ++ LWKEY K D+R++ D + +E +T L G L+L +V A ++++ +R
Sbjct: 68 GNITHSDALIASLWKEYGKADARWLYFDPTIVSVEILTVVLGGSLALVLVYAIVKEKHYR 127
Query: 629 FVLQLVVSVGQIYGDVLYFLTEHRDGFQHGELGHPIYFWFYFVFMNALWLVLPGILVLDS 808
+Q+ + V ++YG + F + G + +YFW Y VF N +W+++PG+L+ S
Sbjct: 128 HFVQITLCVCELYGGWMTFCPDWLMGSPNLNTNSWLYFWVYLVFFNGVWVLIPGLLLWQS 187
Query: 809 IKQLSHAQRMLDSKASRAKSK 871
+L + + K S ++ K
Sbjct: 188 WVEL----KKMHHKGSNSRKK 204
>ref|XP_002691837.1| PREDICTED: emopamil binding related protein, delta8-delta7 sterol
isomerase-like [Bos taurus].
Length = 206
Score = 89.7 bits (221), Expect = 4e-18
Identities = 55/201 (27%), Positives = 98/201 (48%), Gaps = 6/201 (2%)
Frame = +2
Query: 287 GLFSASGVLVVTTWLLSGRAAVVPLSTWR----RLSLCWFAVCGFVHLVIEGWFCLYHE- 451
G + +L+ + L G A + L R R L W VH +EG +
Sbjct: 8 GAAAGGSLLLCASLLAVGCALGLRLGRGRGAADRGLLAWLCFNALVHFALEGPYVYLSMV 67
Query: 452 -ELLGDQAFLSQLWKEYAKGDSRYILNDNFTICMETITACLWGPLSLWVVIAFLRQQPHR 628
+ A ++ LWKEY K D+R++ D + +E +T L G L+L +V A ++++ +R
Sbjct: 68 GNITHSDALIASLWKEYGKADARWLYFDPTIVSVEILTVVLGGSLALVLVYAIVKEKHYR 127
Query: 629 FVLQLVVSVGQIYGDVLYFLTEHRDGFQHGELGHPIYFWFYFVFMNALWLVLPGILVLDS 808
+Q+ + V ++YG + F + G + +YFW Y VF N +W+++PG+L+ S
Sbjct: 128 HFVQITLCVCELYGGWMTFCPDWLMGSPNLNTNSWLYFWVYLVFFNGVWVLIPGLLLWQS 187
Query: 809 IKQLSHAQRMLDSKASRAKSK 871
+L + + K S ++ K
Sbjct: 188 WVEL----KKMHHKGSNSRKK 204
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,708,078
Number of extensions: 1061515
Number of successful extensions: 3626
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3624
Number of HSP's successfully gapped: 3
Length of query: 390
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 286
Effective length of database: 14,240,222
Effective search space: 4072703492
Effective search space used: 4072703492
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
VIAFLRQQPHRFVLQLVVSVGQIYGDVLYFLTEHRDGFQHGELG 727
ETITACLW PLSLWVVIAFL QQP RFVLQL+VSVGQIYGDVLYFLTEHRDGFQHGELG
Sbjct: 121 TETITACLWRPLSLWVVIAFLLQQPLRFVLQLMVSVGQIYGDVLYFLTEHRDGFQHGELG 180
Query: 728 HPIYFWFYFVFMNALWLVLPGILVLDSIKQLSHAQRMLDSKASRAKSK 871
HP+YFWFY VFMN+LWLVLPGILVLDS+KQL+HAQ +LD+K ++AKSK
Sbjct: 181 HPLYFWFYCVFMNSLWLVLPGILVLDSVKQLAHAQSVLDAKGTKAKSK 228
>ref|XP_533979.2| PREDICTED: similar to cysteine and histidine-rich domain
(CHORD)-containing, zinc-binding protein 1 [Canis
familiaris].
Length = 642
Score = 297 bits (760), Expect = 1e-80
Identities = 135/155 (87%), Positives = 142/155 (91%)
Frame = +2
Query: 188 MTTNASPMHPYWPRHLRLDNFVPNDCPTWHILAGLFSASGVLVVTTWLLSGRAAVVPLST 367
MTTNAS HPYWPRHLRLDNFVPNDCPTWH+LA LFS SGVLV TTWLLSG A V+PL T
Sbjct: 1 MTTNASSSHPYWPRHLRLDNFVPNDCPTWHLLASLFSVSGVLVATTWLLSGSAVVMPLGT 60
Query: 368 WRRLSLCWFAVCGFVHLVIEGWFCLYHEELLGDQAFLSQLWKEYAKGDSRYILNDNFTIC 547
WRRLSLCWFAVCGF+H+VIEGWF LYHE+LLGDQAFLSQLWKEYAKGDSRYIL+DNFTIC
Sbjct: 61 WRRLSLCWFAVCGFIHMVIEGWFSLYHEDLLGDQAFLSQLWKEYAKGDSRYILSDNFTIC 120
Query: 548 METITACLWGPLSLWVVIAFLRQQPHRFVLQLVVS 652
ME ITACLWGPLS WVVIAFLRQQP F+LQLVVS
Sbjct: 121 MEAITACLWGPLSRWVVIAFLRQQPLSFLLQLVVS 155
>ref|XP_862935.1| PREDICTED: similar to
3-beta-hydroxysteroid-delta(8),delta(7)-isomerase
(Cholestenol delta-isomerase) (Delta8-delta7 sterol
isomerase) (D8-D7 sterol isomerase) (Emopamil-binding
protein) isoform 2 [Canis familiaris].
Length = 108
Score = 207 bits (526), Expect = 2e-53
Identities = 95/108 (87%), Positives = 104/108 (96%)
Frame = +2
Query: 548 METITACLWGPLSLWVVIAFLRQQPHRFVLQLVVSVGQIYGDVLYFLTEHRDGFQHGELG 727
METITACLWGPLSLWVVIAFLRQQP RF+LQLVVSVGQIYGDVLYFLTEHRDGFQHGE+G
Sbjct: 1 METITACLWGPLSLWVVIAFLRQQPLRFILQLVVSVGQIYGDVLYFLTEHRDGFQHGEVG 60
Query: 728 HPIYFWFYFVFMNALWLVLPGILVLDSIKQLSHAQRMLDSKASRAKSK 871
HP+YFWFYFVFMN LWLVLPGILVLDS+KQL+HAQ +LD+K ++AKSK
Sbjct: 61 HPLYFWFYFVFMNGLWLVLPGILVLDSVKQLAHAQSVLDAKGTKAKSK 108
>ref|XP_534113.2| PREDICTED: similar to emopamil binding related protein,
delta8-delta7 sterol isomerase [Canis familiaris].
Length = 198
Score = 89.0 bits (219), Expect = 8e-18
Identities = 52/177 (29%), Positives = 93/177 (52%), Gaps = 6/177 (3%)
Frame = +2
Query: 308 VLVVTTWLLSGRAAVVPLSTWR----RLSLCWFAVCGFVHLVIEGWFCL--YHEELLGDQ 469
+L+ + LL+G A + L R R L W VHL +EG F + + +
Sbjct: 7 LLLCASLLLAGCALGLRLGRGRGAADRAVLAWLCYDALVHLALEGPFVYLSFAGSVADSE 66
Query: 470 AFLSQLWKEYAKGDSRYILNDNFTICMETITACLWGPLSLWVVIAFLRQQPHRFVLQLVV 649
++ LWKEY K D+R++ D + +E +T L G L+L +V A + ++ +R +Q+ +
Sbjct: 67 GLIASLWKEYGKADARWLYFDPTIVSLEVLTVVLDGSLALVLVYAIVTEKYYRHFIQVTL 126
Query: 650 SVGQIYGDVLYFLTEHRDGFQHGELGHPIYFWFYFVFMNALWLVLPGILVLDSIKQL 820
V ++YG + F+ + G + +YF Y VF N++W+++PG+L+ S +L
Sbjct: 127 CVCELYGGWMTFVPDWLVGSPNLNTDDWLYFGVYLVFFNSVWVLIPGLLLCQSWVEL 183
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,356,264
Number of extensions: 1078552
Number of successful extensions: 3562
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3559
Number of HSP's successfully gapped: 5
Length of query: 390
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 285
Effective length of database: 15,374,224
Effective search space: 4381653840
Effective search space used: 4381653840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012978
(1170 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001161118.1| 3-beta-hydroxysteroid-Delta(8),Delta(7)-isom... 489 e-139
Alignment gi|XP_003131007.1| PREDICTED: emopamil-binding protein-like iso... 95 9e-20
>ref|NP_001161118.1| 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase [Sus scrofa].
Length = 230
Score = 489 bits (1260), Expect = e-139
Identities = 230/230 (100%), Positives = 230/230 (100%)
Frame = +2
Query: 188 MTTNASPMHPYWPRHLRLDNFVPNDCPTWHILAGLFSASGVLVVTTWLLSGRAAVVPLST 367
MTTNASPMHPYWPRHLRLDNFVPNDCPTWHILAGLFSASGVLVVTTWLLSGRAAVVPLST
Sbjct: 1 MTTNASPMHPYWPRHLRLDNFVPNDCPTWHILAGLFSASGVLVVTTWLLSGRAAVVPLST 60
Query: 368 WRRLSLCWFAVCGFVHLVIEGWFCLYHEELLGDQAFLSQLWKEYAKGDSRYILNDNFTIC 547
WRRLSLCWFAVCGFVHLVIEGWFCLYHEELLGDQAFLSQLWKEYAKGDSRYILNDNFTIC
Sbjct: 61 WRRLSLCWFAVCGFVHLVIEGWFCLYHEELLGDQAFLSQLWKEYAKGDSRYILNDNFTIC 120
Query: 548 METITACLWGPLSLWVVIAFLRQQPHRFVLQLVVSVGQIYGDVLYFLTEHRDGFQHGELG 727
METITACLWGPLSLWVVIAFLRQQPHRFVLQLVVSVGQIYGDVLYFLTEHRDGFQHGELG
Sbjct: 121 METITACLWGPLSLWVVIAFLRQQPHRFVLQLVVSVGQIYGDVLYFLTEHRDGFQHGELG 180
Query: 728 HPIYFWFYFVFMNALWLVLPGILVLDSIKQLSHAQRMLDSKASRAKSKQN 877
HPIYFWFYFVFMNALWLVLPGILVLDSIKQLSHAQRMLDSKASRAKSKQN
Sbjct: 181 HPIYFWFYFVFMNALWLVLPGILVLDSIKQLSHAQRMLDSKASRAKSKQN 230
>ref|XP_003131007.1| PREDICTED: emopamil-binding protein-like isoform 1 [Sus scrofa].
Length = 206
Score = 94.7 bits (234), Expect = 9e-20
Identities = 58/195 (29%), Positives = 105/195 (53%), Gaps = 9/195 (4%)
Frame = +2
Query: 263 CPTWHILAGLFSASGVLVVTTWLLSGRAAV-VPLSTWR----RLSLCWFAVCGFVHLVIE 427
C W + + +A G L++T LL+ A+ + L R R +L W VH +E
Sbjct: 2 CAGWELGS---AAGGSLLLTAALLAVSCALGLRLGRGRGAADRGALAWLCFDALVHFALE 58
Query: 428 GWFCLYHEELLGD----QAFLSQLWKEYAKGDSRYILNDNFTICMETITACLWGPLSLWV 595
G F + L+G+ A ++ LWKEY K D+R++ +D + +E +T L G L+L +
Sbjct: 59 GPFV--YLSLVGNITDSDALIASLWKEYGKADARWLTSDPTIVALEILTVVLDGSLALVL 116
Query: 596 VIAFLRQQPHRFVLQLVVSVGQIYGDVLYFLTEHRDGFQHGELGHPIYFWFYFVFMNALW 775
+ A ++++ +R +Q+ + V ++YG + F + G + + +YFW Y VF N +W
Sbjct: 117 IYAIVKEKYYRHFVQITLCVCELYGGWMTFCPDWLLGSPNLSTNNWLYFWVYLVFFNGVW 176
Query: 776 LVLPGILVLDSIKQL 820
+++PG+L+ S +L
Sbjct: 177 VLIPGLLLWQSWVEL 191
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,383,777
Number of extensions: 703954
Number of successful extensions: 2359
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2359
Number of HSP's successfully gapped: 2
Length of query: 390
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 289
Effective length of database: 8,829,335
Effective search space: 2551677815
Effective search space used: 2551677815
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012978
(1170 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031924.1| 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomera... 384 e-107
Alignment gi|NP_080874.2| emopamil-binding protein-like [Mus musculus]. 95 1e-19
>ref|NP_031924.1| 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase [Mus musculus].
Length = 230
Score = 384 bits (987), Expect = e-107
Identities = 177/230 (76%), Positives = 200/230 (86%)
Frame = +2
Query: 188 MTTNASPMHPYWPRHLRLDNFVPNDCPTWHILAGLFSASGVLVVTTWLLSGRAAVVPLST 367
MTTN P+HPYWPRHL+LDNFVPND PT HIL GLFS SG L+V TWLLS RA+VVPL
Sbjct: 1 MTTNTVPLHPYWPRHLKLDNFVPNDLPTSHILVGLFSISGGLIVITWLLSSRASVVPLGA 60
Query: 368 WRRLSLCWFAVCGFVHLVIEGWFCLYHEELLGDQAFLSQLWKEYAKGDSRYILNDNFTIC 547
RRL+LCWFAVC F+HLVIEGWF LY+ LL DQAFLSQLWKEY+KGDSRYIL+D+F +C
Sbjct: 61 GRRLALCWFAVCTFIHLVIEGWFSLYNGILLEDQAFLSQLWKEYSKGDSRYILSDSFVVC 120
Query: 548 METITACLWGPLSLWVVIAFLRQQPHRFVLQLVVSVGQIYGDVLYFLTEHRDGFQHGELG 727
MET+TACLWGPLSLWVVIAFLRQQP RFVLQLVVS+GQIYGDVLYFLTE +G QHGE+G
Sbjct: 121 METVTACLWGPLSLWVVIAFLRQQPFRFVLQLVVSMGQIYGDVLYFLTELHEGLQHGEIG 180
Query: 728 HPIYFWFYFVFMNALWLVLPGILVLDSIKQLSHAQRMLDSKASRAKSKQN 877
HP+YFWFYFVF+NA+WLV+P ILVLD+IK L+ AQ +LDSK + KSK N
Sbjct: 181 HPVYFWFYFVFLNAVWLVIPSILVLDAIKHLTSAQSVLDSKVMKIKSKHN 230
>ref|NP_080874.2| emopamil-binding protein-like [Mus musculus].
Length = 206
Score = 94.7 bits (234), Expect = 1e-19
Identities = 57/188 (30%), Positives = 94/188 (50%), Gaps = 6/188 (3%)
Frame = +2
Query: 275 HILAGLFSASGVLVVTTWLLSGRAAVVPLSTWR----RLSLCWFAVCGFVHLVIEGWFCL 442
H G + S +L+ + L G A + L R R L W VH V+EG F
Sbjct: 4 HWALGPEAGSSLLLCSALLAVGCALGLRLGRGRSAVERWVLAWLCYDSLVHFVLEGAFVY 63
Query: 443 YH--EELLGDQAFLSQLWKEYAKGDSRYILNDNFTICMETITACLWGPLSLWVVIAFLRQ 616
+ Q ++ LWKEY K D+R++ +D + +E +T L G L+L ++ A +++
Sbjct: 64 LSIVGNVADSQGLIASLWKEYGKADTRWLYSDPTVVSLEILTVVLDGLLALVLIYAIVKE 123
Query: 617 QPHRFVLQLVVSVGQIYGDVLYFLTEHRDGFQHGELGHPIYFWFYFVFMNALWLVLPGIL 796
+ +R +Q+V+ V ++YG + F E G +Y W Y VF N LW+++PG+L
Sbjct: 124 KYYRHFVQIVLCVCELYGCWMTFFPEWLVGSPSLNTSSWLYLWVYLVFFNGLWVLIPGLL 183
Query: 797 VLDSIKQL 820
+ S +L
Sbjct: 184 LWQSWVEL 191
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,365,267
Number of extensions: 897355
Number of successful extensions: 3143
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3139
Number of HSP's successfully gapped: 2
Length of query: 390
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 287
Effective length of database: 12,523,851
Effective search space: 3594345237
Effective search space used: 3594345237
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012978
(1170 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006570.1| 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomera... 444 e-125
Alignment gi|NP_115954.1| emopamil-binding protein-like [Homo sapiens]. 89 1e-17
>ref|NP_006570.1| 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase [Homo sapiens].
Length = 230
Score = 444 bits (1142), Expect = e-125
Identities = 202/230 (87%), Positives = 219/230 (95%)
Frame = +2
Query: 188 MTTNASPMHPYWPRHLRLDNFVPNDCPTWHILAGLFSASGVLVVTTWLLSGRAAVVPLST 367
MTTNA P+HPYWP+HLRLDNFVPND PTWHILAGLFS +GVLVVTTWLLSGRAAVVPL T
Sbjct: 1 MTTNAGPLHPYWPQHLRLDNFVPNDRPTWHILAGLFSVTGVLVVTTWLLSGRAAVVPLGT 60
Query: 368 WRRLSLCWFAVCGFVHLVIEGWFCLYHEELLGDQAFLSQLWKEYAKGDSRYILNDNFTIC 547
WRRLSLCWFAVCGF+HLVIEGWF LY+E+LLGDQAFLSQLWKEYAKGDSRYIL DNFT+C
Sbjct: 61 WRRLSLCWFAVCGFIHLVIEGWFVLYYEDLLGDQAFLSQLWKEYAKGDSRYILGDNFTVC 120
Query: 548 METITACLWGPLSLWVVIAFLRQQPHRFVLQLVVSVGQIYGDVLYFLTEHRDGFQHGELG 727
METITACLWGPLSLWVVIAFLRQ P RF+LQLVVSVGQIYGDVLYFLTEHRDGFQHGELG
Sbjct: 121 METITACLWGPLSLWVVIAFLRQHPLRFILQLVVSVGQIYGDVLYFLTEHRDGFQHGELG 180
Query: 728 HPIYFWFYFVFMNALWLVLPGILVLDSIKQLSHAQRMLDSKASRAKSKQN 877
HP+YFWFYFVFMNALWLVLPG+LVLD++K L+HAQ LD+KA++AKSK+N
Sbjct: 181 HPLYFWFYFVFMNALWLVLPGVLVLDAVKHLTHAQSTLDAKATKAKSKKN 230
>ref|NP_115954.1| emopamil-binding protein-like [Homo sapiens].
Length = 206
Score = 88.6 bits (218), Expect = 1e-17
Identities = 51/171 (29%), Positives = 91/171 (53%), Gaps = 4/171 (2%)
Frame = +2
Query: 374 RLSLCWFAVCGFVHLVIEGWFCLYHEELLGDQA----FLSQLWKEYAKGDSRYILNDNFT 541
R +L W VH +EG F + L+G+ A ++ LWKEY K D+R++ D
Sbjct: 41 RGALIWLCYDALVHFALEGPFV--YLSLVGNVANSDGLIASLWKEYGKADARWVYFDPTI 98
Query: 542 ICMETITACLWGPLSLWVVIAFLRQQPHRFVLQLVVSVGQIYGDVLYFLTEHRDGFQHGE 721
+ +E +T L G L+L+++ A ++++ +R LQ+ + V ++YG + FL E +
Sbjct: 99 VSVEILTVALDGSLALFLIYAIVKEKYYRHFLQITLCVCELYGCWMTFLPEWLTRSPNLN 158
Query: 722 LGHPIYFWFYFVFMNALWLVLPGILVLDSIKQLSHAQRMLDSKASRAKSKQ 874
+ +Y W Y F N +W+++PG+L+ S +L ++M + S K Q
Sbjct: 159 TSNWLYCWLYLFFFNGVWVLIPGLLLWQSWLEL---KKMHQKETSSVKKFQ 206
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,596,334
Number of extensions: 1062050
Number of successful extensions: 3526
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3521
Number of HSP's successfully gapped: 2
Length of query: 390
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 286
Effective length of database: 14,868,908
Effective search space: 4252507688
Effective search space used: 4252507688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012978
(1170 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 739 0.0
>Sscrofa_ChrX
|| Length = 144288218
Score = 739 bits (373), Expect = 0.0
Identities = 373/373 (100%)
Strand = Plus / Minus
Query: 117 ggtttttcctctttctttgttctcctttctacatatccatacacagcccacagctgtcag 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47626069 ggtttttcctctttctttgttctcctttctacatatccatacacagcccacagctgtcag 47626010
Query: 177 ccgacaaagacatgaccaccaacgccagccccatgcatccatactggcctcggcacctga 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47626009 ccgacaaagacatgaccaccaacgccagccccatgcatccatactggcctcggcacctga 47625950
Query: 237 ggctggacaactttgtgcctaatgactgccccacttggcatatcctggctggcctcttct 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47625949 ggctggacaactttgtgcctaatgactgccccacttggcatatcctggctggcctcttct 47625890
Query: 297 ccgcctctggagtcttagtcgtcactacctggctgttgtcaggtcgtgctgcggtcgtcc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47625889 ccgcctctggagtcttagtcgtcactacctggctgttgtcaggtcgtgctgcggtcgtcc 47625830
Query: 357 cactgagcacttggcggagactgtccttgtgctggtttgcagtctgtgggttcgttcact 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47625829 cactgagcacttggcggagactgtccttgtgctggtttgcagtctgtgggttcgttcact 47625770
Query: 417 tggtgattgagggctggttctgtctctaccacgaggagcttcttggagaccaagccttct 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47625769 tggtgattgagggctggttctgtctctaccacgaggagcttcttggagaccaagccttct 47625710
Query: 477 tatctcaactctg 489
|||||||||||||
Sbjct: 47625709 tatctcaactctg 47625697
Score = 672 bits (339), Expect = 0.0
Identities = 339/339 (100%)
Strand = Plus / Minus
Query: 656 ggtcagatatacggggatgtgctctatttcctgacagagcaccgtgacggattccagcac 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47619949 ggtcagatatacggggatgtgctctatttcctgacagagcaccgtgacggattccagcac 47619890
Query: 716 ggggagctgggccacccaatctacttctggttttactttgtcttcatgaatgctctgtgg 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47619889 ggggagctgggccacccaatctacttctggttttactttgtcttcatgaatgctctgtgg 47619830
Query: 776 ctggtgctgcccggaatccttgtgcttgattcgataaagcaactcagtcacgcccagagg 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47619829 ctggtgctgcccggaatccttgtgcttgattcgataaagcaactcagtcacgcccagagg 47619770
Query: 836 atgctggactccaaagcctccagagccaagagcaagcaaaactaatgagtgatgaactgg 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47619769 atgctggactccaaagcctccagagccaagagcaagcaaaactaatgagtgatgaactgg 47619710
Query: 896 gcttgaacactggccgttgaggaactcgccacctgtgtccagtccttgctcctacagatt 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47619709 gcttgaacactggccgttgaggaactcgccacctgtgtccagtccttgctcctacagatt 47619650
Query: 956 ggaaggaccaatcgaattgatctgtcaaactcgggctga 994
|||||||||||||||||||||||||||||||||||||||
Sbjct: 47619649 ggaaggaccaatcgaattgatctgtcaaactcgggctga 47619611
Score = 264 bits (133), Expect = 1e-67
Identities = 133/133 (100%)
Strand = Plus / Minus
Query: 526 gaatgataacttcaccatctgcatggagaccatcaccgcctgcctctggggaccactcag 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47621335 gaatgataacttcaccatctgcatggagaccatcaccgcctgcctctggggaccactcag 47621276
Query: 586 cctatgggtggtgatcgcctttctccgccagcagccccaccgctttgtcctccagctggt 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47621275 cctatgggtggtgatcgcctttctccgccagcagccccaccgctttgtcctccagctggt 47621216
Query: 646 ggtctctgtgggt 658
|||||||||||||
Sbjct: 47621215 ggtctctgtgggt 47621203
Score = 234 bits (118), Expect = 9e-59
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 2 ataaggcgaggaaaccgtgaagggatgggtaagaatcacggctctctcggaccctgcgag 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47627411 ataaggcgaggaaaccgtgaagggatgggtaagaatcacggctctctcggaccctgcgag 47627352
Query: 62 ctagcctagagagacctgggaggctgtgggagaagccgccgcaaccgcgctgctgggt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47627351 ctagcctagagagacctgggaggctgtgggagaagccgccgcaaccgcgctgctgggt 47627294
Score = 75.8 bits (38), Expect = 5e-11
Identities = 38/38 (100%)
Strand = Plus / Minus
Query: 489 ggaaggaatatgccaagggagacagccgatacatcctg 526
||||||||||||||||||||||||||||||||||||||
Sbjct: 47621503 ggaaggaatatgccaagggagacagccgatacatcctg 47621466
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,153,847
Number of extensions: 186
Number of successful extensions: 186
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 5
Length of query: 1170
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1149
Effective length of database: 2,808,413,156
Effective search space: 3226866716244
Effective search space used: 3226866716244
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)