Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013021
(1117 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_544672.2| PREDICTED: similar to Protein KIAA0256 isoform ... 491 e-153
Alignment gi|XP_861906.1| PREDICTED: similar to Protein KIAA0256 isoform ... 491 e-153
>ref|XP_544672.2| PREDICTED: similar to Protein KIAA0256 isoform 1 [Canis familiaris].
Length = 1102
Score = 491 bits (1265), Expect(2) = e-153
Identities = 235/250 (94%), Positives = 245/250 (98%)
Frame = +2
Query: 284 MDRAPADQNVKLSAEVEPFIPQKKNPDTFMIPMALPNDSGNVSGVEPTPIPSYLITCYPF 463
MDRAPA+QNVKLSAEVEPFIPQKKNPDTFMIPMALPND+GNVSGVEPTPIPSYLITCYPF
Sbjct: 1 MDRAPAEQNVKLSAEVEPFIPQKKNPDTFMIPMALPNDNGNVSGVEPTPIPSYLITCYPF 60
Query: 464 VQENQSNRQFPLYSSDIRWQQPNPNPAGPYLAYPIISAQPPVSTEYTYYQLMPAPCAQVM 643
VQENQSNRQFPLY++DIRWQQP+PNPAGPYLAYPIISAQPPVSTEYTYYQLMPAPCAQVM
Sbjct: 61 VQENQSNRQFPLYNNDIRWQQPSPNPAGPYLAYPIISAQPPVSTEYTYYQLMPAPCAQVM 120
Query: 644 GFYHPFPAPYSNTFQAANTVNTITTECTERPSQLGQVFPLSGHRSRNSNRGPVVPKQQLL 823
GFYHPFP PYSNTFQAANTVNTITTECTERP+QLGQVFPLS HRSRNSNRGPVVPKQQLL
Sbjct: 121 GFYHPFPTPYSNTFQAANTVNTITTECTERPNQLGQVFPLSSHRSRNSNRGPVVPKQQLL 180
Query: 824 QQHIKSKRPLVKNVATQKETNAAGPDNRSKIVLLVDASQQTDFPSDIANKSLSESSAAML 1003
QQHIKSKRPLVKNVATQKETNAAGPDNRSKIVLLVDASQQTDFPSDIANKSLSESSA ML
Sbjct: 181 QQHIKSKRPLVKNVATQKETNAAGPDNRSKIVLLVDASQQTDFPSDIANKSLSESSATML 240
Query: 1004 WKAKGQEEKS 1033
WK+KG+ ++
Sbjct: 241 WKSKGRRRRA 250
Score = 68.9 bits (167), Expect(2) = e-153
Identities = 32/36 (88%), Positives = 33/36 (91%)
Frame = +3
Query: 1008 RPKARRRRASHPTAESSSEQGASETDIDSDSGYCSP 1115
+ K RRRRASHPTAESSSEQGASE DIDSDSGYCSP
Sbjct: 242 KSKGRRRRASHPTAESSSEQGASEADIDSDSGYCSP 277
>ref|XP_861906.1| PREDICTED: similar to Protein KIAA0256 isoform 2 [Canis familiaris].
Length = 1056
Score = 491 bits (1265), Expect(2) = e-153
Identities = 235/250 (94%), Positives = 245/250 (98%)
Frame = +2
Query: 284 MDRAPADQNVKLSAEVEPFIPQKKNPDTFMIPMALPNDSGNVSGVEPTPIPSYLITCYPF 463
MDRAPA+QNVKLSAEVEPFIPQKKNPDTFMIPMALPND+GNVSGVEPTPIPSYLITCYPF
Sbjct: 1 MDRAPAEQNVKLSAEVEPFIPQKKNPDTFMIPMALPNDNGNVSGVEPTPIPSYLITCYPF 60
Query: 464 VQENQSNRQFPLYSSDIRWQQPNPNPAGPYLAYPIISAQPPVSTEYTYYQLMPAPCAQVM 643
VQENQSNRQFPLY++DIRWQQP+PNPAGPYLAYPIISAQPPVSTEYTYYQLMPAPCAQVM
Sbjct: 61 VQENQSNRQFPLYNNDIRWQQPSPNPAGPYLAYPIISAQPPVSTEYTYYQLMPAPCAQVM 120
Query: 644 GFYHPFPAPYSNTFQAANTVNTITTECTERPSQLGQVFPLSGHRSRNSNRGPVVPKQQLL 823
GFYHPFP PYSNTFQAANTVNTITTECTERP+QLGQVFPLS HRSRNSNRGPVVPKQQLL
Sbjct: 121 GFYHPFPTPYSNTFQAANTVNTITTECTERPNQLGQVFPLSSHRSRNSNRGPVVPKQQLL 180
Query: 824 QQHIKSKRPLVKNVATQKETNAAGPDNRSKIVLLVDASQQTDFPSDIANKSLSESSAAML 1003
QQHIKSKRPLVKNVATQKETNAAGPDNRSKIVLLVDASQQTDFPSDIANKSLSESSA ML
Sbjct: 181 QQHIKSKRPLVKNVATQKETNAAGPDNRSKIVLLVDASQQTDFPSDIANKSLSESSATML 240
Query: 1004 WKAKGQEEKS 1033
WK+KG+ ++
Sbjct: 241 WKSKGRRRRA 250
Score = 68.9 bits (167), Expect(2) = e-153
Identities = 32/36 (88%), Positives = 33/36 (91%)
Frame = +3
Query: 1008 RPKARRRRASHPTAESSSEQGASETDIDSDSGYCSP 1115
+ K RRRRASHPTAESSSEQGASE DIDSDSGYCSP
Sbjct: 242 KSKGRRRRASHPTAESSSEQGASEADIDSDSGYCSP 277
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,312,265
Number of extensions: 1279986
Number of successful extensions: 4747
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4718
Number of HSP's successfully gapped: 4
Length of query: 372
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 268
Effective length of database: 15,407,560
Effective search space: 4129226080
Effective search space used: 4129226080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013021
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013021
(1117 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002691021.1| PREDICTED: SECIS-binding protein 2-like [Bos... 327 2e-89
>ref|XP_002691021.1| PREDICTED: SECIS-binding protein 2-like [Bos taurus].
Length = 411
Score = 327 bits (837), Expect = 2e-89
Identities = 155/165 (93%), Positives = 162/165 (98%)
Frame = +2
Query: 485 RQFPLYSSDIRWQQPNPNPAGPYLAYPIISAQPPVSTEYTYYQLMPAPCAQVMGFYHPFP 664
++FPLY++DIRWQQPNPNPAGPYLAYPIISAQPPVSTEYTYYQLMPAPCAQVMGFYHPFP
Sbjct: 168 KKFPLYNNDIRWQQPNPNPAGPYLAYPIISAQPPVSTEYTYYQLMPAPCAQVMGFYHPFP 227
Query: 665 APYSNTFQAANTVNTITTECTERPSQLGQVFPLSGHRSRNSNRGPVVPKQQLLQQHIKSK 844
APYSNTFQAANTVNTITTECTERP+ LGQVFPLSGHR+RNSNRGPVVPKQQL QQHIKSK
Sbjct: 228 APYSNTFQAANTVNTITTECTERPNHLGQVFPLSGHRNRNSNRGPVVPKQQLTQQHIKSK 287
Query: 845 RPLVKNVATQKETNAAGPDNRSKIVLLVDASQQTDFPSDIANKSL 979
RPLVKNVA QKET+AAGPDNRSKIVLLVDASQQTDFPSDIANKSL
Sbjct: 288 RPLVKNVAIQKETSAAGPDNRSKIVLLVDASQQTDFPSDIANKSL 332
Score = 126 bits (317), Expect = 3e-29
Identities = 59/60 (98%), Positives = 60/60 (100%)
Frame = +2
Query: 308 NVKLSAEVEPFIPQKKNPDTFMIPMALPNDSGNVSGVEPTPIPSYLITCYPFVQENQSNR 487
NVKLSAEVEPFIPQKKNPDTFMIPMALPND+GNVSGVEPTPIPSYLITCYPFVQENQSNR
Sbjct: 337 NVKLSAEVEPFIPQKKNPDTFMIPMALPNDNGNVSGVEPTPIPSYLITCYPFVQENQSNR 396
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,452,931
Number of extensions: 1245187
Number of successful extensions: 4697
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4680
Number of HSP's successfully gapped: 2
Length of query: 372
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 268
Effective length of database: 14,240,222
Effective search space: 3816379496
Effective search space used: 3816379496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013021
(1117 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193270.1| selenocysteine insertion sequence-binding pr... 506 e-157
>ref|NP_001193270.1| selenocysteine insertion sequence-binding protein 2-like [Sus
scrofa].
Length = 1100
Score = 506 bits (1303), Expect(2) = e-157
Identities = 245/250 (98%), Positives = 248/250 (99%)
Frame = +2
Query: 284 MDRAPADQNVKLSAEVEPFIPQKKNPDTFMIPMALPNDSGNVSGVEPTPIPSYLITCYPF 463
MDRAPADQNVKLSAEVEPFIPQKKNPDTFMIPMALPNDSGNVSGVEPTPIPSYLITCYPF
Sbjct: 1 MDRAPADQNVKLSAEVEPFIPQKKNPDTFMIPMALPNDSGNVSGVEPTPIPSYLITCYPF 60
Query: 464 VQENQSNRQFPLYSSDIRWQQPNPNPAGPYLAYPIISAQPPVSTEYTYYQLMPAPCAQVM 643
VQENQSNRQFPLYSSDIRWQQPNPNPAGPYLAYPIISAQPPVSTEYTYYQLMPAPCAQVM
Sbjct: 61 VQENQSNRQFPLYSSDIRWQQPNPNPAGPYLAYPIISAQPPVSTEYTYYQLMPAPCAQVM 120
Query: 644 GFYHPFPAPYSNTFQAANTVNTITTECTERPSQLGQVFPLSGHRSRNSNRGPVVPKQQLL 823
GFYHPFPAPYSNTFQAANTVNTITTECTERPSQLGQVFPLSGHRSRNSNRGPVVPKQQLL
Sbjct: 121 GFYHPFPAPYSNTFQAANTVNTITTECTERPSQLGQVFPLSGHRSRNSNRGPVVPKQQLL 180
Query: 824 QQHIKSKRPLVKNVATQKETNAAGPDNRSKIVLLVDASQQTDFPSDIANKSLSESSAAML 1003
QQHIKSKRPLVKNVATQKETNAAGPDNRSKIVLLVDASQQTDFPSDIANKSLSESSAAML
Sbjct: 181 QQHIKSKRPLVKNVATQKETNAAGPDNRSKIVLLVDASQQTDFPSDIANKSLSESSAAML 240
Query: 1004 WKAKGQEEKS 1033
WKAKG+ ++
Sbjct: 241 WKAKGRRRRA 250
Score = 68.9 bits (167), Expect(2) = e-157
Identities = 32/36 (88%), Positives = 33/36 (91%)
Frame = +3
Query: 1008 RPKARRRRASHPTAESSSEQGASETDIDSDSGYCSP 1115
+ K RRRRASHPTAESSSEQGASE DIDSDSGYCSP
Sbjct: 242 KAKGRRRRASHPTAESSSEQGASEADIDSDSGYCSP 277
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,992,793
Number of extensions: 799138
Number of successful extensions: 2987
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2977
Number of HSP's successfully gapped: 2
Length of query: 372
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 272
Effective length of database: 8,854,232
Effective search space: 2408351104
Effective search space used: 2408351104
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013021
(1117 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_808276.2| selenocysteine insertion sequence-binding prote... 456 e-141
>ref|NP_808276.2| selenocysteine insertion sequence-binding protein 2-like [Mus
musculus].
Length = 1089
Score = 456 bits (1173), Expect(2) = e-141
Identities = 215/250 (86%), Positives = 236/250 (94%)
Frame = +2
Query: 284 MDRAPADQNVKLSAEVEPFIPQKKNPDTFMIPMALPNDSGNVSGVEPTPIPSYLITCYPF 463
MDRAPA+QNVKLSAEVEPF+PQKKN D F++PMALP+D+G+VSGVEPTPIPSYLITCYPF
Sbjct: 1 MDRAPAEQNVKLSAEVEPFVPQKKNLDAFVLPMALPSDNGSVSGVEPTPIPSYLITCYPF 60
Query: 464 VQENQSNRQFPLYSSDIRWQQPNPNPAGPYLAYPIISAQPPVSTEYTYYQLMPAPCAQVM 643
VQENQSNRQFPLY++DIRWQQP+P+P GPYLAYPIISAQPPVSTEYTYYQLMPAPCAQVM
Sbjct: 61 VQENQSNRQFPLYNNDIRWQQPSPSPTGPYLAYPIISAQPPVSTEYTYYQLMPAPCAQVM 120
Query: 644 GFYHPFPAPYSNTFQAANTVNTITTECTERPSQLGQVFPLSGHRSRNSNRGPVVPKQQLL 823
GFYHPFP PYS+TFQAANTVN I+TECTERP+QLGQ FPLS HRSRN NRGPVVPK QLL
Sbjct: 121 GFYHPFPTPYSSTFQAANTVNAISTECTERPNQLGQAFPLSSHRSRNGNRGPVVPKPQLL 180
Query: 824 QQHIKSKRPLVKNVATQKETNAAGPDNRSKIVLLVDASQQTDFPSDIANKSLSESSAAML 1003
QQHIK+KRP VKNVATQKET+A GPD+RSKIVLLVDASQQTDFPSDIANKSLSES+A ML
Sbjct: 181 QQHIKNKRPQVKNVATQKETSATGPDSRSKIVLLVDASQQTDFPSDIANKSLSESTATML 240
Query: 1004 WKAKGQEEKS 1033
WKAKG+ ++
Sbjct: 241 WKAKGRRRRA 250
Score = 65.5 bits (158), Expect(2) = e-141
Identities = 30/36 (83%), Positives = 31/36 (86%)
Frame = +3
Query: 1008 RPKARRRRASHPTAESSSEQGASETDIDSDSGYCSP 1115
+ K RRRRASHP ESSSEQGASE DIDSDSGYCSP
Sbjct: 242 KAKGRRRRASHPAVESSSEQGASEADIDSDSGYCSP 277
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,811,705
Number of extensions: 1065543
Number of successful extensions: 3973
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3953
Number of HSP's successfully gapped: 2
Length of query: 372
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 269
Effective length of database: 12,523,851
Effective search space: 3368915919
Effective search space used: 3368915919
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013021
(1117 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001180418.1| selenocysteine insertion sequence-binding pr... 477 e-148
Alignment gi|NP_055516.2| selenocysteine insertion sequence-binding prote... 477 e-148
>ref|NP_001180418.1| selenocysteine insertion sequence-binding protein 2-like isoform 1
[Homo sapiens].
Length = 1101
Score = 477 bits (1227), Expect(2) = e-148
Identities = 227/250 (90%), Positives = 240/250 (96%)
Frame = +2
Query: 284 MDRAPADQNVKLSAEVEPFIPQKKNPDTFMIPMALPNDSGNVSGVEPTPIPSYLITCYPF 463
MDRAP +QNVKLSAEVEPFIPQKK+PDTFMIPMALPND+G+VSGVEPTPIPSYLITCYPF
Sbjct: 1 MDRAPTEQNVKLSAEVEPFIPQKKSPDTFMIPMALPNDNGSVSGVEPTPIPSYLITCYPF 60
Query: 464 VQENQSNRQFPLYSSDIRWQQPNPNPAGPYLAYPIISAQPPVSTEYTYYQLMPAPCAQVM 643
VQENQSNRQFPLY++DIRWQQPNPNP GPY AYPIISAQPPVSTEYTYYQLMPAPCAQVM
Sbjct: 61 VQENQSNRQFPLYNNDIRWQQPNPNPTGPYFAYPIISAQPPVSTEYTYYQLMPAPCAQVM 120
Query: 644 GFYHPFPAPYSNTFQAANTVNTITTECTERPSQLGQVFPLSGHRSRNSNRGPVVPKQQLL 823
GFYHPFP PYSNTFQAANTVN ITTECTERPSQLGQVFPLS HRSRNSNRG VVPKQQLL
Sbjct: 121 GFYHPFPTPYSNTFQAANTVNAITTECTERPSQLGQVFPLSSHRSRNSNRGSVVPKQQLL 180
Query: 824 QQHIKSKRPLVKNVATQKETNAAGPDNRSKIVLLVDASQQTDFPSDIANKSLSESSAAML 1003
QQHIKSKRPLVKNVATQKETNAAGPD+RSKIVLLVDASQQTDFPSDIANKSLSE++A ML
Sbjct: 181 QQHIKSKRPLVKNVATQKETNAAGPDSRSKIVLLVDASQQTDFPSDIANKSLSETTATML 240
Query: 1004 WKAKGQEEKS 1033
WK+KG+ ++
Sbjct: 241 WKSKGRRRRA 250
Score = 68.9 bits (167), Expect(2) = e-148
Identities = 32/36 (88%), Positives = 33/36 (91%)
Frame = +3
Query: 1008 RPKARRRRASHPTAESSSEQGASETDIDSDSGYCSP 1115
+ K RRRRASHPTAESSSEQGASE DIDSDSGYCSP
Sbjct: 242 KSKGRRRRASHPTAESSSEQGASEADIDSDSGYCSP 277
>ref|NP_055516.2| selenocysteine insertion sequence-binding protein 2-like isoform 2
[Homo sapiens].
Length = 1056
Score = 477 bits (1227), Expect(2) = e-148
Identities = 227/250 (90%), Positives = 240/250 (96%)
Frame = +2
Query: 284 MDRAPADQNVKLSAEVEPFIPQKKNPDTFMIPMALPNDSGNVSGVEPTPIPSYLITCYPF 463
MDRAP +QNVKLSAEVEPFIPQKK+PDTFMIPMALPND+G+VSGVEPTPIPSYLITCYPF
Sbjct: 1 MDRAPTEQNVKLSAEVEPFIPQKKSPDTFMIPMALPNDNGSVSGVEPTPIPSYLITCYPF 60
Query: 464 VQENQSNRQFPLYSSDIRWQQPNPNPAGPYLAYPIISAQPPVSTEYTYYQLMPAPCAQVM 643
VQENQSNRQFPLY++DIRWQQPNPNP GPY AYPIISAQPPVSTEYTYYQLMPAPCAQVM
Sbjct: 61 VQENQSNRQFPLYNNDIRWQQPNPNPTGPYFAYPIISAQPPVSTEYTYYQLMPAPCAQVM 120
Query: 644 GFYHPFPAPYSNTFQAANTVNTITTECTERPSQLGQVFPLSGHRSRNSNRGPVVPKQQLL 823
GFYHPFP PYSNTFQAANTVN ITTECTERPSQLGQVFPLS HRSRNSNRG VVPKQQLL
Sbjct: 121 GFYHPFPTPYSNTFQAANTVNAITTECTERPSQLGQVFPLSSHRSRNSNRGSVVPKQQLL 180
Query: 824 QQHIKSKRPLVKNVATQKETNAAGPDNRSKIVLLVDASQQTDFPSDIANKSLSESSAAML 1003
QQHIKSKRPLVKNVATQKETNAAGPD+RSKIVLLVDASQQTDFPSDIANKSLSE++A ML
Sbjct: 181 QQHIKSKRPLVKNVATQKETNAAGPDSRSKIVLLVDASQQTDFPSDIANKSLSETTATML 240
Query: 1004 WKAKGQEEKS 1033
WK+KG+ ++
Sbjct: 241 WKSKGRRRRA 250
Score = 68.9 bits (167), Expect(2) = e-148
Identities = 32/36 (88%), Positives = 33/36 (91%)
Frame = +3
Query: 1008 RPKARRRRASHPTAESSSEQGASETDIDSDSGYCSP 1115
+ K RRRRASHPTAESSSEQGASE DIDSDSGYCSP
Sbjct: 242 KSKGRRRRASHPTAESSSEQGASEADIDSDSGYCSP 277
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,541,054
Number of extensions: 1268146
Number of successful extensions: 4867
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4849
Number of HSP's successfully gapped: 4
Length of query: 372
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 268
Effective length of database: 14,868,908
Effective search space: 3984867344
Effective search space used: 3984867344
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013021
(1117 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 648 0.0
>Sscrofa_Chr01
|| Length = 315321322
Score = 648 bits (327), Expect = 0.0
Identities = 327/327 (100%)
Strand = Plus / Plus
Query: 485 agacagtttccattatatagcagtgatatacgatggcaacagcccaatccaaaccctgct 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136468761 agacagtttccattatatagcagtgatatacgatggcaacagcccaatccaaaccctgct 136468820
Query: 545 ggaccataccttgcttaccccattatatctgctcagccacctgtttctacggagtataca 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136468821 ggaccataccttgcttaccccattatatctgctcagccacctgtttctacggagtataca 136468880
Query: 605 tattatcagttgatgccagcaccatgtgcccaggttatgggtttctatcatccttttcct 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136468881 tattatcagttgatgccagcaccatgtgcccaggttatgggtttctatcatccttttcct 136468940
Query: 665 gcaccctactccaacacttttcaggctgcaaatactgtcaataccataaccacagagtgc 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136468941 gcaccctactccaacacttttcaggctgcaaatactgtcaataccataaccacagagtgc 136469000
Query: 725 actgagcgtccaagtcagcttggacaagtcttcccattgtctggtcatcgaagcagaaac 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136469001 actgagcgtccaagtcagcttggacaagtcttcccattgtctggtcatcgaagcagaaac 136469060
Query: 785 agtaacagaggaccagtggtaccaaaa 811
|||||||||||||||||||||||||||
Sbjct: 136469061 agtaacagaggaccagtggtaccaaaa 136469087
Score = 603 bits (304), Expect = e-170
Identities = 304/304 (100%)
Strand = Plus / Plus
Query: 4 attttgcgtacctccatttccgactacgcctctcgcccatttggaccctcctcggcttcc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136458261 attttgcgtacctccatttccgactacgcctctcgcccatttggaccctcctcggcttcc 136458320
Query: 64 gttccagatgatccctcccagaggttgaggctgcctcctccttcttctggagctagagcc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136458321 gttccagatgatccctcccagaggttgaggctgcctcctccttcttctggagctagagcc 136458380
Query: 124 acctccccggccagtggcgtagccggactctgcgtcggggccagctagataggggcggag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136458381 acctccccggccagtggcgtagccggactctgcgtcggggccagctagataggggcggag 136458440
Query: 184 gtccggagcccggtctggactcgagcggagggccatggagaaagcggccccaggcgcttt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136458441 gtccggagcccggtctggactcgagcggagggccatggagaaagcggccccaggcgcttt 136458500
Query: 244 ccacaccgactaacgtgggcccgttccggctgtaggcgccatggaccgagcccccgcaga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136458501 ccacaccgactaacgtgggcccgttccggctgtaggcgccatggaccgagcccccgcaga 136458560
Query: 304 ccag 307
||||
Sbjct: 136458561 ccag 136458564
Score = 359 bits (181), Expect = 2e-96
Identities = 181/181 (100%)
Strand = Plus / Plus
Query: 306 agaatgtcaagctgtcagctgaggtagaaccatttattccccaaaagaagaatcctgata 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136466615 agaatgtcaagctgtcagctgaggtagaaccatttattccccaaaagaagaatcctgata 136466674
Query: 366 cgtttatgatccctatggcactcccaaatgatagtggaaatgtttctggtgtagaaccaa 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136466675 cgtttatgatccctatggcactcccaaatgatagtggaaatgtttctggtgtagaaccaa 136466734
Query: 426 ctccaattcccagctacctgattacttgttatccgtttgtgcaggaaaaccagtccaata 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136466735 ctccaattcccagctacctgattacttgttatccgtttgtgcaggaaaaccagtccaata 136466794
Query: 486 g 486
|
Sbjct: 136466795 g 136466795
Score = 315 bits (159), Expect = 3e-83
Identities = 169/171 (98%), Gaps = 1/171 (0%)
Strand = Plus / Plus
Query: 947 gatttcccatcagacatcgctaacaagtctctctcggagagctctgctgcgatgctttgg 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136475793 gatttcccatcagacatcgctaacaagtctctctcggagagctctgctgcgatgctttgg 136475852
Query: 1007 aaggccaaaggccaggaggagaagagcatcccatcctactgcagagtcctctagtgagca 1066
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136475853 aaggccaaaggc-aggaggagaagagcatcccatcctactgcagagtcctctagtgagca 136475911
Query: 1067 gggagctagtgaaactgacattgacagtgatagtggctattgcagtcccaa 1117
||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 136475912 gggagctagtgaagctgacattgacagtgatagtggctattgcagtcccaa 136475962
Score = 270 bits (136), Expect = 2e-69
Identities = 136/136 (100%)
Strand = Plus / Plus
Query: 812 caacagcttttacaacagcacataaaaagcaaaaggccactggtgaaaaatgtagctact 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136471716 caacagcttttacaacagcacataaaaagcaaaaggccactggtgaaaaatgtagctact 136471775
Query: 872 cagaaggagacaaatgcagcaggtcctgataatcgatcaaaaattgtgctactggtagac 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136471776 cagaaggagacaaatgcagcaggtcctgataatcgatcaaaaattgtgctactggtagac 136471835
Query: 932 gcttcccagcaaactg 947
||||||||||||||||
Sbjct: 136471836 gcttcccagcaaactg 136471851
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,863,233
Number of extensions: 149
Number of successful extensions: 149
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 5
Length of query: 1117
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1096
Effective length of database: 2,808,413,156
Effective search space: 3078020818976
Effective search space used: 3078020818976
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)