Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013040
(1128 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069769.1| apolipoprotein D precursor [Bos taurus]. 349 3e-96
>ref|NP_001069769.1| apolipoprotein D precursor [Bos taurus].
Length = 189
Score = 349 bits (895), Expect = 3e-96
Identities = 162/187 (86%), Positives = 171/187 (91%)
Frame = +2
Query: 203 MVPTXXXXXXXXXXXXVAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPVSFEKGS 382
MVP AEGQAFHLGKCP+PPVQENFDVNKYLG+WYEIEKIPVSFEKGS
Sbjct: 1 MVPVLLLLPALAGLFGAAEGQAFHLGKCPHPPVQENFDVNKYLGKWYEIEKIPVSFEKGS 60
Query: 383 CIQANYSLKENGNIKVINKELRADGTVNQIEGEATPDNITEPAKLGVKFFWLMPSAPYWV 562
CIQANYSLKENGN++VINKELRADGTVNQIEGEATP+NITEPAKL VKFFW MPSAPYWV
Sbjct: 61 CIQANYSLKENGNVEVINKELRADGTVNQIEGEATPENITEPAKLAVKFFWFMPSAPYWV 120
Query: 563 LATDYENYALVYSCTTIIWLFHLDHVWILGRNPYLPPETVTYLKDILTSNDIDIEKMTIT 742
LATDYENYALVYSCTTIIWLFH+DHVWILGRNPYLPPETVTYLKDILTSN+I++EKMTIT
Sbjct: 121 LATDYENYALVYSCTTIIWLFHMDHVWILGRNPYLPPETVTYLKDILTSNNIEVEKMTIT 180
Query: 743 DQVNCPE 763
DQVNCPE
Sbjct: 181 DQVNCPE 187
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,228,195
Number of extensions: 1052160
Number of successful extensions: 2990
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2981
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 272
Effective length of database: 14,240,222
Effective search space: 3873340384
Effective search space used: 3873340384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013040
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013040
(1128 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_859125.1| PREDICTED: similar to Apolipoprotein D precurso... 345 5e-95
Alignment gi|XP_535780.1| PREDICTED: similar to Apolipoprotein D precurso... 345 5e-95
>ref|XP_859125.1| PREDICTED: similar to Apolipoprotein D precursor (Apo-D) (ApoD)
isoform 2 [Canis familiaris].
Length = 205
Score = 345 bits (885), Expect = 5e-95
Identities = 162/203 (79%), Positives = 175/203 (86%)
Frame = +2
Query: 161 LDLKKVHLQPPSPKMVPTXXXXXXXXXXXXVAEGQAFHLGKCPNPPVQENFDVNKYLGRW 340
L ++ + P+M+ A+GQAFHLG+CP PPVQENFDV+KYLGRW
Sbjct: 3 LHVETAFILTKKPRMLTALLLLPALAGLLPAADGQAFHLGRCPTPPVQENFDVHKYLGRW 62
Query: 341 YEIEKIPVSFEKGSCIQANYSLKENGNIKVINKELRADGTVNQIEGEATPDNITEPAKLG 520
YEIEKIPVSFEKGSCIQANYSL ENGNIKVIN+ELR+DGTVNQIEGEAT N+TEPAKLG
Sbjct: 63 YEIEKIPVSFEKGSCIQANYSLMENGNIKVINQELRSDGTVNQIEGEATQGNLTEPAKLG 122
Query: 521 VKFFWLMPSAPYWVLATDYENYALVYSCTTIIWLFHLDHVWILGRNPYLPPETVTYLKDI 700
VKFFWLMPSAPYWVLATDYENYALVYSCTTI+WLFH+DHVWILGRNPYLPPETVTYLKDI
Sbjct: 123 VKFFWLMPSAPYWVLATDYENYALVYSCTTIVWLFHMDHVWILGRNPYLPPETVTYLKDI 182
Query: 701 LTSNDIDIEKMTITDQVNCPEYL 769
LTSNDIDIEKMTITDQVNCPE L
Sbjct: 183 LTSNDIDIEKMTITDQVNCPESL 205
>ref|XP_535780.1| PREDICTED: similar to Apolipoprotein D precursor (Apo-D) (ApoD)
isoform 1 [Canis familiaris].
Length = 205
Score = 345 bits (885), Expect = 5e-95
Identities = 162/203 (79%), Positives = 175/203 (86%)
Frame = +2
Query: 161 LDLKKVHLQPPSPKMVPTXXXXXXXXXXXXVAEGQAFHLGKCPNPPVQENFDVNKYLGRW 340
L ++ + P+M+ A+GQAFHLG+CP PPVQENFDV+KYLGRW
Sbjct: 3 LHVETAFILTKKPRMLTALLLLPALAGLLPAADGQAFHLGRCPTPPVQENFDVHKYLGRW 62
Query: 341 YEIEKIPVSFEKGSCIQANYSLKENGNIKVINKELRADGTVNQIEGEATPDNITEPAKLG 520
YEIEKIPVSFEKGSCIQANYSL ENGNIKVIN+ELR+DGTVNQIEGEAT N+TEPAKLG
Sbjct: 63 YEIEKIPVSFEKGSCIQANYSLMENGNIKVINQELRSDGTVNQIEGEATQGNLTEPAKLG 122
Query: 521 VKFFWLMPSAPYWVLATDYENYALVYSCTTIIWLFHLDHVWILGRNPYLPPETVTYLKDI 700
VKFFWLMPSAPYWVLATDYENYALVYSCTTI+WLFH+DHVWILGRNPYLPPETVTYLKDI
Sbjct: 123 VKFFWLMPSAPYWVLATDYENYALVYSCTTIVWLFHMDHVWILGRNPYLPPETVTYLKDI 182
Query: 701 LTSNDIDIEKMTITDQVNCPEYL 769
LTSNDIDIEKMTITDQVNCPE L
Sbjct: 183 LTSNDIDIEKMTITDQVNCPESL 205
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,051,138
Number of extensions: 1073151
Number of successful extensions: 3159
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3149
Number of HSP's successfully gapped: 2
Length of query: 376
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 272
Effective length of database: 15,407,560
Effective search space: 4190856320
Effective search space used: 4190856320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013040
(1128 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003132650.1| PREDICTED: apolipoprotein D isoform 2 [Sus s... 374 e-104
Alignment gi|XP_001926098.2| PREDICTED: apolipoprotein D isoform 1 [Sus s... 374 e-104
Alignment gi|XP_003360946.1| PREDICTED: apolipoprotein D-like [Sus scrofa]. 360 1e-99
>ref|XP_003132650.1| PREDICTED: apolipoprotein D isoform 2 [Sus scrofa].
Length = 190
Score = 374 bits (959), Expect = e-104
Identities = 178/190 (93%), Positives = 178/190 (93%)
Frame = +2
Query: 203 MVPTXXXXXXXXXXXXVAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPVSFEKGS 382
MVPT VAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPVSFEKGS
Sbjct: 1 MVPTLLLLPALAGLLGVAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPVSFEKGS 60
Query: 383 CIQANYSLKENGNIKVINKELRADGTVNQIEGEATPDNITEPAKLGVKFFWLMPSAPYWV 562
CIQANYSLKENGNIKVINKELRADGTVNQIEGEATPDNITEPAKLGVKFFWLMPSAPYWV
Sbjct: 61 CIQANYSLKENGNIKVINKELRADGTVNQIEGEATPDNITEPAKLGVKFFWLMPSAPYWV 120
Query: 563 LATDYENYALVYSCTTIIWLFHLDHVWILGRNPYLPPETVTYLKDILTSNDIDIEKMTIT 742
LATDYENYALVYSCTTIIWLFHLDHVWILGRNPYLPPETVTYLKDILTSNDIDIEKMTIT
Sbjct: 121 LATDYENYALVYSCTTIIWLFHLDHVWILGRNPYLPPETVTYLKDILTSNDIDIEKMTIT 180
Query: 743 DQVNCPEYLQ 772
DQVNCPEYLQ
Sbjct: 181 DQVNCPEYLQ 190
>ref|XP_001926098.2| PREDICTED: apolipoprotein D isoform 1 [Sus scrofa].
Length = 190
Score = 374 bits (959), Expect = e-104
Identities = 178/190 (93%), Positives = 178/190 (93%)
Frame = +2
Query: 203 MVPTXXXXXXXXXXXXVAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPVSFEKGS 382
MVPT VAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPVSFEKGS
Sbjct: 1 MVPTLLLLPALAGLLGVAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPVSFEKGS 60
Query: 383 CIQANYSLKENGNIKVINKELRADGTVNQIEGEATPDNITEPAKLGVKFFWLMPSAPYWV 562
CIQANYSLKENGNIKVINKELRADGTVNQIEGEATPDNITEPAKLGVKFFWLMPSAPYWV
Sbjct: 61 CIQANYSLKENGNIKVINKELRADGTVNQIEGEATPDNITEPAKLGVKFFWLMPSAPYWV 120
Query: 563 LATDYENYALVYSCTTIIWLFHLDHVWILGRNPYLPPETVTYLKDILTSNDIDIEKMTIT 742
LATDYENYALVYSCTTIIWLFHLDHVWILGRNPYLPPETVTYLKDILTSNDIDIEKMTIT
Sbjct: 121 LATDYENYALVYSCTTIIWLFHLDHVWILGRNPYLPPETVTYLKDILTSNDIDIEKMTIT 180
Query: 743 DQVNCPEYLQ 772
DQVNCPEYLQ
Sbjct: 181 DQVNCPEYLQ 190
>ref|XP_003360946.1| PREDICTED: apolipoprotein D-like [Sus scrofa].
Length = 190
Score = 360 bits (923), Expect = 1e-99
Identities = 172/190 (90%), Positives = 172/190 (90%)
Frame = +2
Query: 203 MVPTXXXXXXXXXXXXVAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPVSFEKGS 382
MVPT VAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPVSFEKGS
Sbjct: 1 MVPTLLLLPALAGLLGVAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPVSFEKGS 60
Query: 383 CIQANYSLKENGNIKVINKELRADGTVNQIEGEATPDNITEPAKLGVKFFWLMPSAPYWV 562
CIQANYSLKENGNIKVINKELRADGTVNQIEGEATPDNITEPAKLGVKFFWLMPSAPYWV
Sbjct: 61 CIQANYSLKENGNIKVINKELRADGTVNQIEGEATPDNITEPAKLGVKFFWLMPSAPYWV 120
Query: 563 LATDYENYALVYSCTTIIWLFHLDHVWILGRNPYLPPETVTYLKDILTSNDIDIEKMTIT 742
LATDYENYALVYSCTTIIWLFHLDHVWILGRNPYLPP KDILTSNDIDIEKMTIT
Sbjct: 121 LATDYENYALVYSCTTIIWLFHLDHVWILGRNPYLPPXXXXXXKDILTSNDIDIEKMTIT 180
Query: 743 DQVNCPEYLQ 772
DQVNCPEYLQ
Sbjct: 181 DQVNCPEYLQ 190
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,721,885
Number of extensions: 701815
Number of successful extensions: 1939
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1933
Number of HSP's successfully gapped: 3
Length of query: 376
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 275
Effective length of database: 8,829,335
Effective search space: 2428067125
Effective search space used: 2428067125
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013040
(1128 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031496.2| apolipoprotein D precursor [Mus musculus]. 305 6e-83
Alignment gi|XP_001479188.2| PREDICTED: apolipoprotein D-like [Mus muscul... 159 3e-39
>ref|NP_031496.2| apolipoprotein D precursor [Mus musculus].
Length = 189
Score = 305 bits (780), Expect = 6e-83
Identities = 138/172 (80%), Positives = 154/172 (89%)
Frame = +2
Query: 254 AEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPVSFEKGSCIQANYSLKENGNIKVI 433
A+GQ FHLGKCP+PPVQENFDV KYLGRWYEIEKIP SFEKG+CIQANYSL ENGNI+V+
Sbjct: 18 AKGQNFHLGKCPSPPVQENFDVKKYLGRWYEIEKIPASFEKGNCIQANYSLMENGNIEVL 77
Query: 434 NKELRADGTVNQIEGEATPDNITEPAKLGVKFFWLMPSAPYWVLATDYENYALVYSCTTI 613
NKEL DGT+NQ++GEA N++EPAKL V+FF LMP APYW+LATDYENYALVYSCTT
Sbjct: 78 NKELSPDGTMNQVKGEAKQSNVSEPAKLEVQFFPLMPPAPYWILATDYENYALVYSCTTF 137
Query: 614 IWLFHLDHVWILGRNPYLPPETVTYLKDILTSNDIDIEKMTITDQVNCPEYL 769
WLFH+D VWILGRNPYLPPET+TYLKDILTSN IDIEKMT TDQ NCP++L
Sbjct: 138 FWLFHVDFVWILGRNPYLPPETITYLKDILTSNGIDIEKMTTTDQANCPDFL 189
>ref|XP_001479188.2| PREDICTED: apolipoprotein D-like [Mus musculus].
Length = 118
Score = 159 bits (403), Expect = 3e-39
Identities = 73/97 (75%), Positives = 84/97 (86%)
Frame = +2
Query: 254 AEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPVSFEKGSCIQANYSLKENGNIKVI 433
A+GQ FHLGKCP+PPVQENFDV KYLGRWYEIEKIP SFEKG+CIQANYSL ENGNI+V+
Sbjct: 18 AKGQNFHLGKCPSPPVQENFDVKKYLGRWYEIEKIPASFEKGNCIQANYSLMENGNIEVL 77
Query: 434 NKELRADGTVNQIEGEATPDNITEPAKLGVKFFWLMP 544
NKEL DGT+NQ++GEA N++EPAKL V+FF P
Sbjct: 78 NKELSPDGTMNQVKGEAKQSNVSEPAKLEVQFFPCRP 114
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,976,097
Number of extensions: 896583
Number of successful extensions: 2664
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2648
Number of HSP's successfully gapped: 2
Length of query: 376
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 273
Effective length of database: 12,523,851
Effective search space: 3419011323
Effective search space used: 3419011323
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013040
(1128 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001638.1| apolipoprotein D precursor [Homo sapiens]. 304 1e-82
>ref|NP_001638.1| apolipoprotein D precursor [Homo sapiens].
Length = 189
Score = 304 bits (778), Expect = 1e-82
Identities = 141/170 (82%), Positives = 153/170 (90%)
Frame = +2
Query: 254 AEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPVSFEKGSCIQANYSLKENGNIKVI 433
AEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIP +FE G CIQANYSL ENG IKV+
Sbjct: 18 AEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFENGRCIQANYSLMENGKIKVL 77
Query: 434 NKELRADGTVNQIEGEATPDNITEPAKLGVKFFWLMPSAPYWVLATDYENYALVYSCTTI 613
N+ELRADGTVNQIEGEATP N+TEPAKL VKF W MPSAPYW+LATDYENYALVYSCT I
Sbjct: 78 NQELRADGTVNQIEGEATPVNLTEPAKLEVKFSWFMPSAPYWILATDYENYALVYSCTCI 137
Query: 614 IWLFHLDHVWILGRNPYLPPETVTYLKDILTSNDIDIEKMTITDQVNCPE 763
I LFH+D WIL RNP LPPETV LK+ILTSN+ID++KMT+TDQVNCP+
Sbjct: 138 IQLFHVDFAWILARNPNLPPETVDSLKNILTSNNIDVKKMTVTDQVNCPK 187
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,321,722
Number of extensions: 1061576
Number of successful extensions: 3104
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3101
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 272
Effective length of database: 14,868,908
Effective search space: 4044342976
Effective search space used: 4044342976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013040
(1128 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 557 e-156
gb|GL893127.2| Sus scrofa unplaced genomic scaffold ChrUScaf1012 426 e-116
>Sscrofa_Chr13
|| Length = 218635234
Score = 557 bits (281), Expect = e-156
Identities = 281/281 (100%)
Strand = Plus / Plus
Query: 537 tgatgccatcagctccatactgggtcctggccaccgactatgagaactacgcccttgtgt 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142094464 tgatgccatcagctccatactgggtcctggccaccgactatgagaactacgcccttgtgt 142094523
Query: 597 actcctgtaccacaatcatctggctttttcacctggatcatgtttggatcttgggaagaa 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142094524 actcctgtaccacaatcatctggctttttcacctggatcatgtttggatcttgggaagaa 142094583
Query: 657 acccttatctccctccagaaacagtgacctatctcaaagatatcctgacctctaatgaca 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142094584 acccttatctccctccagaaacagtgacctatctcaaagatatcctgacctctaatgaca 142094643
Query: 717 ttgacattgagaaaatgactatcacagatcaggtgaactgccccgagtacctgcaatgag 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142094644 ttgacattgagaaaatgactatcacagatcaggtgaactgccccgagtacctgcaatgag 142094703
Query: 777 gctttaaagggaggctccatgttctttcttttgctttgcgt 817
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 142094704 gctttaaagggaggctccatgttctttcttttgctttgcgt 142094744
Score = 442 bits (223), Expect = e-121
Identities = 235/239 (98%)
Strand = Plus / Plus
Query: 850 tcacaaggacacaccaacccaccacgacagatctctgcaaataccagaagggaaatgtga 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142094777 tcacaaggacacaccaacccaccacgacagatctctgcaaataccagaagggaaatgtga 142094836
Query: 910 cagcagaagctagtggtgaggaattcaaggcaagttgacccaaacacttagccgtgcacc 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142094837 cagcagaagctagtggtgaggaattcaaggcaagttgacccaaacacttagccgtgcacc 142094896
Query: 970 accgtgttactttgcaagcctgataataaaattgctgccgacctgctgttctcacagtag 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142094897 accgtgttactttgcaagcctgataataaaattgctgccgacctgctgttctcacagtag 142094956
Query: 1030 attccaaattggactatttattatggggttttaattaaaagctttggtttaaaaatcct 1088
|||||||||||||||| |||||||||||||||||||| ||||||| |||| ||||||||
Sbjct: 142094957 attccaaattggactaattattatggggttttaattataagcttttgtttgaaaatcct 142095015
Score = 349 bits (176), Expect = 2e-93
Identities = 176/176 (100%)
Strand = Plus / Plus
Query: 2 agcttttaggccagccttcctgaactgtagggggtgtggcatgcattaaaattaaacatc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142076205 agcttttaggccagccttcctgaactgtagggggtgtggcatgcattaaaattaaacatc 142076264
Query: 62 agtgaccctgaggaagcttataaaatagcttaggagaagccagtcaccaacagaaggcat 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142076265 agtgaccctgaggaagcttataaaatagcttaggagaagccagtcaccaacagaaggcat 142076324
Query: 122 ctcaccttggatgattctgcatgtggaaacttctttcatcttgatttaaaaaaggt 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142076325 ctcaccttggatgattctgcatgtggaaacttctttcatcttgatttaaaaaaggt 142076380
Score = 301 bits (152), Expect = 4e-79
Identities = 152/152 (100%)
Strand = Plus / Plus
Query: 174 aggtccatctccagccacccagccccaagatggtgccaacgctgctgctgcttcccgccc 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142079918 aggtccatctccagccacccagccccaagatggtgccaacgctgctgctgcttcccgccc 142079977
Query: 234 tggctggcctccttggagtggctgagggacaagccttccacctcgggaaatgcccgaatc 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142079978 tggctggcctccttggagtggctgagggacaagccttccacctcgggaaatgcccgaatc 142080037
Query: 294 ctccagtgcaggagaattttgacgtcaataag 325
||||||||||||||||||||||||||||||||
Sbjct: 142080038 ctccagtgcaggagaattttgacgtcaataag 142080069
Score = 246 bits (124), Expect = 2e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 324 agtatcttggaagatggtatgaaattgagaagatcccagtgagctttgagaagggaagtt 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142088563 agtatcttggaagatggtatgaaattgagaagatcccagtgagctttgagaagggaagtt 142088622
Query: 384 gcatccaagccaactactcactaaaggaaaacggaaacatcaaagtgataaacaaggagt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142088623 gcatccaagccaactactcactaaaggaaaacggaaacatcaaagtgataaacaaggagt 142088682
Query: 444 tgag 447
||||
Sbjct: 142088683 tgag 142088686
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 446 agagctgacggaactgtgaatcaaattgaaggtgaagccaccccagataacatcactgag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142092597 agagctgacggaactgtgaatcaaattgaaggtgaagccaccccagataacatcactgag 142092656
Query: 506 cctgccaagttgggagttaagtttttctggt 536
|||||||||||||||||||||||||||||||
Sbjct: 142092657 cctgccaagttgggagttaagtttttctggt 142092687
>gb|GL893127.2| Sus scrofa unplaced genomic scaffold ChrUScaf1012
Length = 139712
Score = 426 bits (215), Expect = e-116
Identities = 233/239 (97%)
Strand = Plus / Plus
Query: 850 tcacaaggacacaccaacccaccacgacagatctctgcaaataccagaagggaaatgtga 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55825 tcacaaggacacaccaacccaccacgacagatctctgcaaataccagaagggaaatgtga 55884
Query: 910 cagcagaagctagtggtgaggaattcaaggcaagttgacccaaacacttagccgtgcacc 969
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 55885 cagcagaagctagtggtgaggaattaaaagcaagttgacccaaacacttagccgtgcacc 55944
Query: 970 accgtgttactttgcaagcctgataataaaattgctgccgacctgctgttctcacagtag 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55945 accgtgttactttgcaagcctgataataaaattgctgccgacctgctgttctcacagtag 56004
Query: 1030 attccaaattggactatttattatggggttttaattaaaagctttggtttaaaaatcct 1088
|||||||||||||||| |||||||||||||||||||| ||||||| |||| ||||||||
Sbjct: 56005 attccaaattggactaattattatggggttttaattataagcttttgtttgaaaatcct 56063
Score = 349 bits (176), Expect = 2e-93
Identities = 176/176 (100%)
Strand = Plus / Plus
Query: 2 agcttttaggccagccttcctgaactgtagggggtgtggcatgcattaaaattaaacatc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38584 agcttttaggccagccttcctgaactgtagggggtgtggcatgcattaaaattaaacatc 38643
Query: 62 agtgaccctgaggaagcttataaaatagcttaggagaagccagtcaccaacagaaggcat 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38644 agtgaccctgaggaagcttataaaatagcttaggagaagccagtcaccaacagaaggcat 38703
Query: 122 ctcaccttggatgattctgcatgtggaaacttctttcatcttgatttaaaaaaggt 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38704 ctcaccttggatgattctgcatgtggaaacttctttcatcttgatttaaaaaaggt 38759
Score = 301 bits (152), Expect = 4e-79
Identities = 152/152 (100%)
Strand = Plus / Plus
Query: 174 aggtccatctccagccacccagccccaagatggtgccaacgctgctgctgcttcccgccc 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42127 aggtccatctccagccacccagccccaagatggtgccaacgctgctgctgcttcccgccc 42186
Query: 234 tggctggcctccttggagtggctgagggacaagccttccacctcgggaaatgcccgaatc 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42187 tggctggcctccttggagtggctgagggacaagccttccacctcgggaaatgcccgaatc 42246
Query: 294 ctccagtgcaggagaattttgacgtcaataag 325
||||||||||||||||||||||||||||||||
Sbjct: 42247 ctccagtgcaggagaattttgacgtcaataag 42278
Score = 270 bits (136), Expect = 2e-69
Identities = 136/136 (100%)
Strand = Plus / Plus
Query: 537 tgatgccatcagctccatactgggtcctggccaccgactatgagaactacgcccttgtgt 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55417 tgatgccatcagctccatactgggtcctggccaccgactatgagaactacgcccttgtgt 55476
Query: 597 actcctgtaccacaatcatctggctttttcacctggatcatgtttggatcttgggaagaa 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55477 actcctgtaccacaatcatctggctttttcacctggatcatgtttggatcttgggaagaa 55536
Query: 657 acccttatctccctcc 672
||||||||||||||||
Sbjct: 55537 acccttatctccctcc 55552
Score = 252 bits (127), Expect = 4e-64
Identities = 127/127 (100%)
Strand = Plus / Plus
Query: 691 caaagatatcctgacctctaatgacattgacattgagaaaatgactatcacagatcaggt 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55653 caaagatatcctgacctctaatgacattgacattgagaaaatgactatcacagatcaggt 55712
Query: 751 gaactgccccgagtacctgcaatgaggctttaaagggaggctccatgttctttcttttgc 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55713 gaactgccccgagtacctgcaatgaggctttaaagggaggctccatgttctttcttttgc 55772
Query: 811 tttgcgt 817
|||||||
Sbjct: 55773 tttgcgt 55779
Score = 246 bits (124), Expect = 2e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 324 agtatcttggaagatggtatgaaattgagaagatcccagtgagctttgagaagggaagtt 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49634 agtatcttggaagatggtatgaaattgagaagatcccagtgagctttgagaagggaagtt 49693
Query: 384 gcatccaagccaactactcactaaaggaaaacggaaacatcaaagtgataaacaaggagt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49694 gcatccaagccaactactcactaaaggaaaacggaaacatcaaagtgataaacaaggagt 49753
Query: 444 tgag 447
||||
Sbjct: 49754 tgag 49757
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 446 agagctgacggaactgtgaatcaaattgaaggtgaagccaccccagataacatcactgag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53550 agagctgacggaactgtgaatcaaattgaaggtgaagccaccccagataacatcactgag 53609
Query: 506 cctgccaagttgggagttaagtttttctggt 536
|||||||||||||||||||||||||||||||
Sbjct: 53610 cctgccaagttgggagttaagtttttctggt 53640
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,619,391
Number of extensions: 223
Number of successful extensions: 223
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 13
Length of query: 1128
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1107
Effective length of database: 2,808,413,156
Effective search space: 3108913363692
Effective search space used: 3108913363692
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)