Animal-Genome cDNA 20110601C-013040


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013040
         (1128 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001069769.1| apolipoprotein D precursor [Bos taurus].          349   3e-96

>ref|NP_001069769.1| apolipoprotein D precursor [Bos taurus].
          Length = 189

 Score =  349 bits (895), Expect = 3e-96
 Identities = 162/187 (86%), Positives = 171/187 (91%)
 Frame = +2

Query: 203 MVPTXXXXXXXXXXXXVAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPVSFEKGS 382
           MVP              AEGQAFHLGKCP+PPVQENFDVNKYLG+WYEIEKIPVSFEKGS
Sbjct: 1   MVPVLLLLPALAGLFGAAEGQAFHLGKCPHPPVQENFDVNKYLGKWYEIEKIPVSFEKGS 60

Query: 383 CIQANYSLKENGNIKVINKELRADGTVNQIEGEATPDNITEPAKLGVKFFWLMPSAPYWV 562
           CIQANYSLKENGN++VINKELRADGTVNQIEGEATP+NITEPAKL VKFFW MPSAPYWV
Sbjct: 61  CIQANYSLKENGNVEVINKELRADGTVNQIEGEATPENITEPAKLAVKFFWFMPSAPYWV 120

Query: 563 LATDYENYALVYSCTTIIWLFHLDHVWILGRNPYLPPETVTYLKDILTSNDIDIEKMTIT 742
           LATDYENYALVYSCTTIIWLFH+DHVWILGRNPYLPPETVTYLKDILTSN+I++EKMTIT
Sbjct: 121 LATDYENYALVYSCTTIIWLFHMDHVWILGRNPYLPPETVTYLKDILTSNNIEVEKMTIT 180

Query: 743 DQVNCPE 763
           DQVNCPE
Sbjct: 181 DQVNCPE 187


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,228,195
Number of extensions: 1052160
Number of successful extensions: 2990
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2981
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 272
Effective length of database: 14,240,222
Effective search space: 3873340384
Effective search space used: 3873340384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013040

Animal-Genome cDNA 20110601C-013040


Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013040
         (1128 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_859125.1| PREDICTED: similar to Apolipoprotein D precurso...   345   5e-95
Alignment   gi|XP_535780.1| PREDICTED: similar to Apolipoprotein D precurso...   345   5e-95

>ref|XP_859125.1| PREDICTED: similar to Apolipoprotein D precursor (Apo-D) (ApoD)
           isoform 2 [Canis familiaris].
          Length = 205

 Score =  345 bits (885), Expect = 5e-95
 Identities = 162/203 (79%), Positives = 175/203 (86%)
 Frame = +2

Query: 161 LDLKKVHLQPPSPKMVPTXXXXXXXXXXXXVAEGQAFHLGKCPNPPVQENFDVNKYLGRW 340
           L ++   +    P+M+               A+GQAFHLG+CP PPVQENFDV+KYLGRW
Sbjct: 3   LHVETAFILTKKPRMLTALLLLPALAGLLPAADGQAFHLGRCPTPPVQENFDVHKYLGRW 62

Query: 341 YEIEKIPVSFEKGSCIQANYSLKENGNIKVINKELRADGTVNQIEGEATPDNITEPAKLG 520
           YEIEKIPVSFEKGSCIQANYSL ENGNIKVIN+ELR+DGTVNQIEGEAT  N+TEPAKLG
Sbjct: 63  YEIEKIPVSFEKGSCIQANYSLMENGNIKVINQELRSDGTVNQIEGEATQGNLTEPAKLG 122

Query: 521 VKFFWLMPSAPYWVLATDYENYALVYSCTTIIWLFHLDHVWILGRNPYLPPETVTYLKDI 700
           VKFFWLMPSAPYWVLATDYENYALVYSCTTI+WLFH+DHVWILGRNPYLPPETVTYLKDI
Sbjct: 123 VKFFWLMPSAPYWVLATDYENYALVYSCTTIVWLFHMDHVWILGRNPYLPPETVTYLKDI 182

Query: 701 LTSNDIDIEKMTITDQVNCPEYL 769
           LTSNDIDIEKMTITDQVNCPE L
Sbjct: 183 LTSNDIDIEKMTITDQVNCPESL 205


>ref|XP_535780.1| PREDICTED: similar to Apolipoprotein D precursor (Apo-D) (ApoD)
           isoform 1 [Canis familiaris].
          Length = 205

 Score =  345 bits (885), Expect = 5e-95
 Identities = 162/203 (79%), Positives = 175/203 (86%)
 Frame = +2

Query: 161 LDLKKVHLQPPSPKMVPTXXXXXXXXXXXXVAEGQAFHLGKCPNPPVQENFDVNKYLGRW 340
           L ++   +    P+M+               A+GQAFHLG+CP PPVQENFDV+KYLGRW
Sbjct: 3   LHVETAFILTKKPRMLTALLLLPALAGLLPAADGQAFHLGRCPTPPVQENFDVHKYLGRW 62

Query: 341 YEIEKIPVSFEKGSCIQANYSLKENGNIKVINKELRADGTVNQIEGEATPDNITEPAKLG 520
           YEIEKIPVSFEKGSCIQANYSL ENGNIKVIN+ELR+DGTVNQIEGEAT  N+TEPAKLG
Sbjct: 63  YEIEKIPVSFEKGSCIQANYSLMENGNIKVINQELRSDGTVNQIEGEATQGNLTEPAKLG 122

Query: 521 VKFFWLMPSAPYWVLATDYENYALVYSCTTIIWLFHLDHVWILGRNPYLPPETVTYLKDI 700
           VKFFWLMPSAPYWVLATDYENYALVYSCTTI+WLFH+DHVWILGRNPYLPPETVTYLKDI
Sbjct: 123 VKFFWLMPSAPYWVLATDYENYALVYSCTTIVWLFHMDHVWILGRNPYLPPETVTYLKDI 182

Query: 701 LTSNDIDIEKMTITDQVNCPEYL 769
           LTSNDIDIEKMTITDQVNCPE L
Sbjct: 183 LTSNDIDIEKMTITDQVNCPESL 205


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,051,138
Number of extensions: 1073151
Number of successful extensions: 3159
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3149
Number of HSP's successfully gapped: 2
Length of query: 376
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 272
Effective length of database: 15,407,560
Effective search space: 4190856320
Effective search space used: 4190856320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013040
         (1128 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003132650.1| PREDICTED: apolipoprotein D isoform 2 [Sus s...   374   e-104
Alignment   gi|XP_001926098.2| PREDICTED: apolipoprotein D isoform 1 [Sus s...   374   e-104
Alignment   gi|XP_003360946.1| PREDICTED: apolipoprotein D-like [Sus scrofa].    360   1e-99

>ref|XP_003132650.1| PREDICTED: apolipoprotein D isoform 2 [Sus scrofa].
          Length = 190

 Score =  374 bits (959), Expect = e-104
 Identities = 178/190 (93%), Positives = 178/190 (93%)
 Frame = +2

Query: 203 MVPTXXXXXXXXXXXXVAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPVSFEKGS 382
           MVPT            VAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPVSFEKGS
Sbjct: 1   MVPTLLLLPALAGLLGVAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPVSFEKGS 60

Query: 383 CIQANYSLKENGNIKVINKELRADGTVNQIEGEATPDNITEPAKLGVKFFWLMPSAPYWV 562
           CIQANYSLKENGNIKVINKELRADGTVNQIEGEATPDNITEPAKLGVKFFWLMPSAPYWV
Sbjct: 61  CIQANYSLKENGNIKVINKELRADGTVNQIEGEATPDNITEPAKLGVKFFWLMPSAPYWV 120

Query: 563 LATDYENYALVYSCTTIIWLFHLDHVWILGRNPYLPPETVTYLKDILTSNDIDIEKMTIT 742
           LATDYENYALVYSCTTIIWLFHLDHVWILGRNPYLPPETVTYLKDILTSNDIDIEKMTIT
Sbjct: 121 LATDYENYALVYSCTTIIWLFHLDHVWILGRNPYLPPETVTYLKDILTSNDIDIEKMTIT 180

Query: 743 DQVNCPEYLQ 772
           DQVNCPEYLQ
Sbjct: 181 DQVNCPEYLQ 190


>ref|XP_001926098.2| PREDICTED: apolipoprotein D isoform 1 [Sus scrofa].
          Length = 190

 Score =  374 bits (959), Expect = e-104
 Identities = 178/190 (93%), Positives = 178/190 (93%)
 Frame = +2

Query: 203 MVPTXXXXXXXXXXXXVAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPVSFEKGS 382
           MVPT            VAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPVSFEKGS
Sbjct: 1   MVPTLLLLPALAGLLGVAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPVSFEKGS 60

Query: 383 CIQANYSLKENGNIKVINKELRADGTVNQIEGEATPDNITEPAKLGVKFFWLMPSAPYWV 562
           CIQANYSLKENGNIKVINKELRADGTVNQIEGEATPDNITEPAKLGVKFFWLMPSAPYWV
Sbjct: 61  CIQANYSLKENGNIKVINKELRADGTVNQIEGEATPDNITEPAKLGVKFFWLMPSAPYWV 120

Query: 563 LATDYENYALVYSCTTIIWLFHLDHVWILGRNPYLPPETVTYLKDILTSNDIDIEKMTIT 742
           LATDYENYALVYSCTTIIWLFHLDHVWILGRNPYLPPETVTYLKDILTSNDIDIEKMTIT
Sbjct: 121 LATDYENYALVYSCTTIIWLFHLDHVWILGRNPYLPPETVTYLKDILTSNDIDIEKMTIT 180

Query: 743 DQVNCPEYLQ 772
           DQVNCPEYLQ
Sbjct: 181 DQVNCPEYLQ 190


>ref|XP_003360946.1| PREDICTED: apolipoprotein D-like [Sus scrofa].
          Length = 190

 Score =  360 bits (923), Expect = 1e-99
 Identities = 172/190 (90%), Positives = 172/190 (90%)
 Frame = +2

Query: 203 MVPTXXXXXXXXXXXXVAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPVSFEKGS 382
           MVPT            VAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPVSFEKGS
Sbjct: 1   MVPTLLLLPALAGLLGVAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPVSFEKGS 60

Query: 383 CIQANYSLKENGNIKVINKELRADGTVNQIEGEATPDNITEPAKLGVKFFWLMPSAPYWV 562
           CIQANYSLKENGNIKVINKELRADGTVNQIEGEATPDNITEPAKLGVKFFWLMPSAPYWV
Sbjct: 61  CIQANYSLKENGNIKVINKELRADGTVNQIEGEATPDNITEPAKLGVKFFWLMPSAPYWV 120

Query: 563 LATDYENYALVYSCTTIIWLFHLDHVWILGRNPYLPPETVTYLKDILTSNDIDIEKMTIT 742
           LATDYENYALVYSCTTIIWLFHLDHVWILGRNPYLPP      KDILTSNDIDIEKMTIT
Sbjct: 121 LATDYENYALVYSCTTIIWLFHLDHVWILGRNPYLPPXXXXXXKDILTSNDIDIEKMTIT 180

Query: 743 DQVNCPEYLQ 772
           DQVNCPEYLQ
Sbjct: 181 DQVNCPEYLQ 190


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,721,885
Number of extensions: 701815
Number of successful extensions: 1939
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1933
Number of HSP's successfully gapped: 3
Length of query: 376
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 275
Effective length of database: 8,829,335
Effective search space: 2428067125
Effective search space used: 2428067125
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013040
         (1128 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_031496.2| apolipoprotein D precursor [Mus musculus].           305   6e-83
Alignment   gi|XP_001479188.2| PREDICTED: apolipoprotein D-like [Mus muscul...   159   3e-39

>ref|NP_031496.2| apolipoprotein D precursor [Mus musculus].
          Length = 189

 Score =  305 bits (780), Expect = 6e-83
 Identities = 138/172 (80%), Positives = 154/172 (89%)
 Frame = +2

Query: 254 AEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPVSFEKGSCIQANYSLKENGNIKVI 433
           A+GQ FHLGKCP+PPVQENFDV KYLGRWYEIEKIP SFEKG+CIQANYSL ENGNI+V+
Sbjct: 18  AKGQNFHLGKCPSPPVQENFDVKKYLGRWYEIEKIPASFEKGNCIQANYSLMENGNIEVL 77

Query: 434 NKELRADGTVNQIEGEATPDNITEPAKLGVKFFWLMPSAPYWVLATDYENYALVYSCTTI 613
           NKEL  DGT+NQ++GEA   N++EPAKL V+FF LMP APYW+LATDYENYALVYSCTT 
Sbjct: 78  NKELSPDGTMNQVKGEAKQSNVSEPAKLEVQFFPLMPPAPYWILATDYENYALVYSCTTF 137

Query: 614 IWLFHLDHVWILGRNPYLPPETVTYLKDILTSNDIDIEKMTITDQVNCPEYL 769
            WLFH+D VWILGRNPYLPPET+TYLKDILTSN IDIEKMT TDQ NCP++L
Sbjct: 138 FWLFHVDFVWILGRNPYLPPETITYLKDILTSNGIDIEKMTTTDQANCPDFL 189


>ref|XP_001479188.2| PREDICTED: apolipoprotein D-like [Mus musculus].
          Length = 118

 Score =  159 bits (403), Expect = 3e-39
 Identities = 73/97 (75%), Positives = 84/97 (86%)
 Frame = +2

Query: 254 AEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPVSFEKGSCIQANYSLKENGNIKVI 433
           A+GQ FHLGKCP+PPVQENFDV KYLGRWYEIEKIP SFEKG+CIQANYSL ENGNI+V+
Sbjct: 18  AKGQNFHLGKCPSPPVQENFDVKKYLGRWYEIEKIPASFEKGNCIQANYSLMENGNIEVL 77

Query: 434 NKELRADGTVNQIEGEATPDNITEPAKLGVKFFWLMP 544
           NKEL  DGT+NQ++GEA   N++EPAKL V+FF   P
Sbjct: 78  NKELSPDGTMNQVKGEAKQSNVSEPAKLEVQFFPCRP 114


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,976,097
Number of extensions: 896583
Number of successful extensions: 2664
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2648
Number of HSP's successfully gapped: 2
Length of query: 376
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 273
Effective length of database: 12,523,851
Effective search space: 3419011323
Effective search space used: 3419011323
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013040
         (1128 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001638.1| apolipoprotein D precursor [Homo sapiens].           304   1e-82

>ref|NP_001638.1| apolipoprotein D precursor [Homo sapiens].
          Length = 189

 Score =  304 bits (778), Expect = 1e-82
 Identities = 141/170 (82%), Positives = 153/170 (90%)
 Frame = +2

Query: 254 AEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPVSFEKGSCIQANYSLKENGNIKVI 433
           AEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIP +FE G CIQANYSL ENG IKV+
Sbjct: 18  AEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFENGRCIQANYSLMENGKIKVL 77

Query: 434 NKELRADGTVNQIEGEATPDNITEPAKLGVKFFWLMPSAPYWVLATDYENYALVYSCTTI 613
           N+ELRADGTVNQIEGEATP N+TEPAKL VKF W MPSAPYW+LATDYENYALVYSCT I
Sbjct: 78  NQELRADGTVNQIEGEATPVNLTEPAKLEVKFSWFMPSAPYWILATDYENYALVYSCTCI 137

Query: 614 IWLFHLDHVWILGRNPYLPPETVTYLKDILTSNDIDIEKMTITDQVNCPE 763
           I LFH+D  WIL RNP LPPETV  LK+ILTSN+ID++KMT+TDQVNCP+
Sbjct: 138 IQLFHVDFAWILARNPNLPPETVDSLKNILTSNNIDVKKMTVTDQVNCPK 187


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,321,722
Number of extensions: 1061576
Number of successful extensions: 3104
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3101
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 272
Effective length of database: 14,868,908
Effective search space: 4044342976
Effective search space used: 4044342976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013040
         (1128 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr13                                                         557   e-156
gb|GL893127.2| Sus scrofa unplaced genomic scaffold ChrUScaf1012      426   e-116

>Sscrofa_Chr13 
||          Length = 218635234

 Score =  557 bits (281), Expect = e-156
 Identities = 281/281 (100%)
 Strand = Plus / Plus

                                                                             
Query: 537       tgatgccatcagctccatactgggtcctggccaccgactatgagaactacgcccttgtgt 596
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142094464 tgatgccatcagctccatactgggtcctggccaccgactatgagaactacgcccttgtgt 142094523

                                                                             
Query: 597       actcctgtaccacaatcatctggctttttcacctggatcatgtttggatcttgggaagaa 656
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142094524 actcctgtaccacaatcatctggctttttcacctggatcatgtttggatcttgggaagaa 142094583

                                                                             
Query: 657       acccttatctccctccagaaacagtgacctatctcaaagatatcctgacctctaatgaca 716
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142094584 acccttatctccctccagaaacagtgacctatctcaaagatatcctgacctctaatgaca 142094643

                                                                             
Query: 717       ttgacattgagaaaatgactatcacagatcaggtgaactgccccgagtacctgcaatgag 776
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142094644 ttgacattgagaaaatgactatcacagatcaggtgaactgccccgagtacctgcaatgag 142094703

                                                          
Query: 777       gctttaaagggaggctccatgttctttcttttgctttgcgt 817
                 |||||||||||||||||||||||||||||||||||||||||
Sbjct: 142094704 gctttaaagggaggctccatgttctttcttttgctttgcgt 142094744



 Score =  442 bits (223), Expect = e-121
 Identities = 235/239 (98%)
 Strand = Plus / Plus

                                                                             
Query: 850       tcacaaggacacaccaacccaccacgacagatctctgcaaataccagaagggaaatgtga 909
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142094777 tcacaaggacacaccaacccaccacgacagatctctgcaaataccagaagggaaatgtga 142094836

                                                                             
Query: 910       cagcagaagctagtggtgaggaattcaaggcaagttgacccaaacacttagccgtgcacc 969
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142094837 cagcagaagctagtggtgaggaattcaaggcaagttgacccaaacacttagccgtgcacc 142094896

                                                                             
Query: 970       accgtgttactttgcaagcctgataataaaattgctgccgacctgctgttctcacagtag 1029
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142094897 accgtgttactttgcaagcctgataataaaattgctgccgacctgctgttctcacagtag 142094956

                                                                            
Query: 1030      attccaaattggactatttattatggggttttaattaaaagctttggtttaaaaatcct 1088
                 |||||||||||||||| |||||||||||||||||||| ||||||| |||| ||||||||
Sbjct: 142094957 attccaaattggactaattattatggggttttaattataagcttttgtttgaaaatcct 142095015



 Score =  349 bits (176), Expect = 2e-93
 Identities = 176/176 (100%)
 Strand = Plus / Plus

                                                                             
Query: 2         agcttttaggccagccttcctgaactgtagggggtgtggcatgcattaaaattaaacatc 61
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142076205 agcttttaggccagccttcctgaactgtagggggtgtggcatgcattaaaattaaacatc 142076264

                                                                             
Query: 62        agtgaccctgaggaagcttataaaatagcttaggagaagccagtcaccaacagaaggcat 121
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142076265 agtgaccctgaggaagcttataaaatagcttaggagaagccagtcaccaacagaaggcat 142076324

                                                                         
Query: 122       ctcaccttggatgattctgcatgtggaaacttctttcatcttgatttaaaaaaggt 177
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142076325 ctcaccttggatgattctgcatgtggaaacttctttcatcttgatttaaaaaaggt 142076380



 Score =  301 bits (152), Expect = 4e-79
 Identities = 152/152 (100%)
 Strand = Plus / Plus

                                                                             
Query: 174       aggtccatctccagccacccagccccaagatggtgccaacgctgctgctgcttcccgccc 233
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142079918 aggtccatctccagccacccagccccaagatggtgccaacgctgctgctgcttcccgccc 142079977

                                                                             
Query: 234       tggctggcctccttggagtggctgagggacaagccttccacctcgggaaatgcccgaatc 293
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142079978 tggctggcctccttggagtggctgagggacaagccttccacctcgggaaatgcccgaatc 142080037

                                                 
Query: 294       ctccagtgcaggagaattttgacgtcaataag 325
                 ||||||||||||||||||||||||||||||||
Sbjct: 142080038 ctccagtgcaggagaattttgacgtcaataag 142080069



 Score =  246 bits (124), Expect = 2e-62
 Identities = 124/124 (100%)
 Strand = Plus / Plus

                                                                             
Query: 324       agtatcttggaagatggtatgaaattgagaagatcccagtgagctttgagaagggaagtt 383
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142088563 agtatcttggaagatggtatgaaattgagaagatcccagtgagctttgagaagggaagtt 142088622

                                                                             
Query: 384       gcatccaagccaactactcactaaaggaaaacggaaacatcaaagtgataaacaaggagt 443
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142088623 gcatccaagccaactactcactaaaggaaaacggaaacatcaaagtgataaacaaggagt 142088682

                     
Query: 444       tgag 447
                 ||||
Sbjct: 142088683 tgag 142088686



 Score =  180 bits (91), Expect = 1e-42
 Identities = 91/91 (100%)
 Strand = Plus / Plus

                                                                             
Query: 446       agagctgacggaactgtgaatcaaattgaaggtgaagccaccccagataacatcactgag 505
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142092597 agagctgacggaactgtgaatcaaattgaaggtgaagccaccccagataacatcactgag 142092656

                                                
Query: 506       cctgccaagttgggagttaagtttttctggt 536
                 |||||||||||||||||||||||||||||||
Sbjct: 142092657 cctgccaagttgggagttaagtttttctggt 142092687


>gb|GL893127.2| Sus scrofa unplaced genomic scaffold ChrUScaf1012
          Length = 139712

 Score =  426 bits (215), Expect = e-116
 Identities = 233/239 (97%)
 Strand = Plus / Plus

                                                                         
Query: 850   tcacaaggacacaccaacccaccacgacagatctctgcaaataccagaagggaaatgtga 909
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55825 tcacaaggacacaccaacccaccacgacagatctctgcaaataccagaagggaaatgtga 55884

                                                                         
Query: 910   cagcagaagctagtggtgaggaattcaaggcaagttgacccaaacacttagccgtgcacc 969
             ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 55885 cagcagaagctagtggtgaggaattaaaagcaagttgacccaaacacttagccgtgcacc 55944

                                                                         
Query: 970   accgtgttactttgcaagcctgataataaaattgctgccgacctgctgttctcacagtag 1029
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55945 accgtgttactttgcaagcctgataataaaattgctgccgacctgctgttctcacagtag 56004

                                                                        
Query: 1030  attccaaattggactatttattatggggttttaattaaaagctttggtttaaaaatcct 1088
             |||||||||||||||| |||||||||||||||||||| ||||||| |||| ||||||||
Sbjct: 56005 attccaaattggactaattattatggggttttaattataagcttttgtttgaaaatcct 56063



 Score =  349 bits (176), Expect = 2e-93
 Identities = 176/176 (100%)
 Strand = Plus / Plus

                                                                         
Query: 2     agcttttaggccagccttcctgaactgtagggggtgtggcatgcattaaaattaaacatc 61
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38584 agcttttaggccagccttcctgaactgtagggggtgtggcatgcattaaaattaaacatc 38643

                                                                         
Query: 62    agtgaccctgaggaagcttataaaatagcttaggagaagccagtcaccaacagaaggcat 121
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38644 agtgaccctgaggaagcttataaaatagcttaggagaagccagtcaccaacagaaggcat 38703

                                                                     
Query: 122   ctcaccttggatgattctgcatgtggaaacttctttcatcttgatttaaaaaaggt 177
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38704 ctcaccttggatgattctgcatgtggaaacttctttcatcttgatttaaaaaaggt 38759



 Score =  301 bits (152), Expect = 4e-79
 Identities = 152/152 (100%)
 Strand = Plus / Plus

                                                                         
Query: 174   aggtccatctccagccacccagccccaagatggtgccaacgctgctgctgcttcccgccc 233
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42127 aggtccatctccagccacccagccccaagatggtgccaacgctgctgctgcttcccgccc 42186

                                                                         
Query: 234   tggctggcctccttggagtggctgagggacaagccttccacctcgggaaatgcccgaatc 293
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42187 tggctggcctccttggagtggctgagggacaagccttccacctcgggaaatgcccgaatc 42246

                                             
Query: 294   ctccagtgcaggagaattttgacgtcaataag 325
             ||||||||||||||||||||||||||||||||
Sbjct: 42247 ctccagtgcaggagaattttgacgtcaataag 42278



 Score =  270 bits (136), Expect = 2e-69
 Identities = 136/136 (100%)
 Strand = Plus / Plus

                                                                         
Query: 537   tgatgccatcagctccatactgggtcctggccaccgactatgagaactacgcccttgtgt 596
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55417 tgatgccatcagctccatactgggtcctggccaccgactatgagaactacgcccttgtgt 55476

                                                                         
Query: 597   actcctgtaccacaatcatctggctttttcacctggatcatgtttggatcttgggaagaa 656
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55477 actcctgtaccacaatcatctggctttttcacctggatcatgtttggatcttgggaagaa 55536

                             
Query: 657   acccttatctccctcc 672
             ||||||||||||||||
Sbjct: 55537 acccttatctccctcc 55552



 Score =  252 bits (127), Expect = 4e-64
 Identities = 127/127 (100%)
 Strand = Plus / Plus

                                                                         
Query: 691   caaagatatcctgacctctaatgacattgacattgagaaaatgactatcacagatcaggt 750
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55653 caaagatatcctgacctctaatgacattgacattgagaaaatgactatcacagatcaggt 55712

                                                                         
Query: 751   gaactgccccgagtacctgcaatgaggctttaaagggaggctccatgttctttcttttgc 810
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55713 gaactgccccgagtacctgcaatgaggctttaaagggaggctccatgttctttcttttgc 55772

                    
Query: 811   tttgcgt 817
             |||||||
Sbjct: 55773 tttgcgt 55779



 Score =  246 bits (124), Expect = 2e-62
 Identities = 124/124 (100%)
 Strand = Plus / Plus

                                                                         
Query: 324   agtatcttggaagatggtatgaaattgagaagatcccagtgagctttgagaagggaagtt 383
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49634 agtatcttggaagatggtatgaaattgagaagatcccagtgagctttgagaagggaagtt 49693

                                                                         
Query: 384   gcatccaagccaactactcactaaaggaaaacggaaacatcaaagtgataaacaaggagt 443
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49694 gcatccaagccaactactcactaaaggaaaacggaaacatcaaagtgataaacaaggagt 49753

                 
Query: 444   tgag 447
             ||||
Sbjct: 49754 tgag 49757



 Score =  180 bits (91), Expect = 1e-42
 Identities = 91/91 (100%)
 Strand = Plus / Plus

                                                                         
Query: 446   agagctgacggaactgtgaatcaaattgaaggtgaagccaccccagataacatcactgag 505
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53550 agagctgacggaactgtgaatcaaattgaaggtgaagccaccccagataacatcactgag 53609

                                            
Query: 506   cctgccaagttgggagttaagtttttctggt 536
             |||||||||||||||||||||||||||||||
Sbjct: 53610 cctgccaagttgggagttaagtttttctggt 53640


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,619,391
Number of extensions: 223
Number of successful extensions: 223
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 13
Length of query: 1128
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1107
Effective length of database: 2,808,413,156
Effective search space: 3108913363692
Effective search space used: 3108913363692
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)