Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013264
(1085 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002684050.1| PREDICTED: interleukin 3 receptor, alpha-lik... 140 1e-33
Alignment gi|XP_002686644.1| PREDICTED: colony stimulating factor 2 recep... 89 5e-18
Alignment gi|NP_001193606.1| interleukin-13 receptor subunit alpha-1 [Bos... 56 6e-08
Alignment gi|XP_002686633.1| PREDICTED: colony stimulating factor 2 recep... 55 1e-07
>ref|XP_002684050.1| PREDICTED: interleukin 3 receptor, alpha-like, partial [Bos
taurus].
Length = 427
Score = 140 bits (354), Expect = 1e-33
Identities = 72/127 (56%), Positives = 89/127 (70%), Gaps = 1/127 (0%)
Frame = +1
Query: 427 DPDAPIRNLRIEPESGRLSWDLHGNVSEITCYINSKREKRKAQNNRYCAVQPIPCSVTNY 606
DPD PI+NLRI+PE RL+WD HGNVSEI CY+NSK K KA YC++ + C V NY
Sbjct: 3 DPDPPIKNLRIDPERKRLAWDQHGNVSEIGCYVNSKILK-KAIEKPYCSLGDLSCEVKNY 61
Query: 607 TVSVNQGPPLSTFSTWLLYPEPEGNPKAAA-NLTCWIHDVHFLTCRWARGRAAPPDVRYR 783
TV V +G P FS W+ YP+ +GNP AAA NLTC +HDV L+C WA G AP +V+Y
Sbjct: 62 TVKVIKGQP---FSAWIQYPK-QGNPLAAADNLTCRVHDVDQLSCSWAVGEEAPANVQYH 117
Query: 784 LYLENPL 804
YL++PL
Sbjct: 118 FYLKHPL 124
Score = 87.4 bits (215), Expect = 2e-17
Identities = 48/115 (41%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Frame = +1
Query: 739 RWARGRAA--PPDVRYRLYLENPLSHQMWECVHDEADPRGTHFQCRFDISALSDKLGRLA 912
R RG A+ PPD R + + W C + +G + QC FD +L + L
Sbjct: 172 RGFRGGASGSPPDPAPRACCP---ARKTWPCPKYMQNQQGVNVQCHFDSLSLQPERQTLF 228
Query: 913 RFLVNGSTSSGSRIPCSELTSQLSPMEILTAPHITNSWCNQSYAIMRWTVQSTLT 1077
RFLVNG TS GS+IPC ++T +L +EIL AP+IT WCN++Y+ M W V+S T
Sbjct: 229 RFLVNG-TSGGSKIPCRQMTHRLEEIEILAAPNITKKWCNENYSFMEWEVRSLFT 282
>ref|XP_002686644.1| PREDICTED: colony stimulating factor 2 receptor alpha chain-like [Bos
taurus].
Length = 348
Score = 89.4 bits (220), Expect = 5e-18
Identities = 68/221 (30%), Positives = 104/221 (47%), Gaps = 12/221 (5%)
Frame = +1
Query: 430 PDAPIRNLRIEPESGRLSWDLHGNVSEITCYINSKRE---KRKAQNNRYCAVQPIPCSVT 600
P+A + N++ +P++ +L+WD N S C + K + K+K +++ C T
Sbjct: 21 PNASL-NVKFDPQTTKLTWDCRENASSGECVLIHKEKGPIKKKVKDSE--------CQCT 71
Query: 601 NYTVSVNQGPPLST--------FSTWLLYPEPEGNPKAAANLTCWIHDVHFLTCRWARGR 756
S++ G L+ S L+Y P AA N +C I+D F+ C WA+GR
Sbjct: 72 FQDYSLHGGVTLTVEVHVNQRRLSEMLVYTNPGREGTAAQNFSCVIYDADFMNCSWAKGR 131
Query: 757 AAPPDVRYRLYLENPLSHQMWECVHDEADPRGTHFQCRF-DISALSDKLGRLARFLVNGS 933
AAP DV+Y LY+ + + EC D GTH C D+S L+ FLVNG
Sbjct: 132 AAPDDVQYFLYIRSKKRIER-ECPRYLKD-SGTHVGCHLQDLSGLTS----YNYFLVNG- 184
Query: 934 TSSGSRIPCSELTSQLSPMEILTAPHITNSWCNQSYAIMRW 1056
TS + I + L +E P CN+S+ ++RW
Sbjct: 185 TSQETGIQFFDSVLLLKEIEQYNPPDNITVQCNESHCLIRW 225
>ref|NP_001193606.1| interleukin-13 receptor subunit alpha-1 [Bos taurus].
Length = 424
Score = 55.8 bits (133), Expect = 6e-08
Identities = 49/192 (25%), Positives = 74/192 (38%), Gaps = 4/192 (2%)
Frame = +1
Query: 496 GNVSEITCYINSKREKRKAQNNRYCAVQPIPCSVTNYTVSVNQGPPLSTFSTWLLYPEPE 675
GN + + R K N R C CS N+ S + P PE
Sbjct: 68 GNKQDKKIAPETHRSKEVPLNERICLQVGSQCST-------NESEKPSILVEKCISP-PE 119
Query: 676 GNPKAAAN-LTCWIHDVHFLTCRWARGRAAPPDVRYRLYLENPLSHQMWECVHDEADPRG 852
G+P++A L C H++ ++ C W GR A PD Y LY + ++ +C + G
Sbjct: 120 GDPESAVTELQCIWHNLRYMKCTWLPGRNASPDTNYTLYYWHNSLGKILQC--ENIYREG 177
Query: 853 THFQCRFDISALSDKLGRLARFLVNGSTSSGSRIPCSE---LTSQLSPMEILTAPHITNS 1023
H C F+++ + D V ++G P LTS + P PHI N
Sbjct: 178 QHIACSFNLTKVKDSSFEQHSVQVMVKDNAGKIRPSFNIVPLTSHVKP----DPPHIKNL 233
Query: 1024 WCNQSYAIMRWT 1059
++WT
Sbjct: 234 SFQNGDLYVQWT 245
>ref|XP_002686633.1| PREDICTED: colony stimulating factor 2 receptor alpha chain-like [Bos
taurus].
Length = 300
Score = 54.7 bits (130), Expect = 1e-07
Identities = 40/110 (36%), Positives = 49/110 (44%), Gaps = 1/110 (0%)
Frame = +1
Query: 730 LTCRWARGRAAPPDVRYRLYLENPLSHQMWECVHDEADPRGTHFQCRFDISALSDKLGRL 909
+ C W RG AAP DV+Y+LY L + EC H D GT C FD
Sbjct: 1 MNCSWTRGPAAPADVQYQLYSWTSLHGNVSECSHYVLDSAGTRVGCHFDELGEGHTTDDY 60
Query: 910 ARFLVNGSTSSGSRIPCSELTSQLSP-MEILTAPHITNSWCNQSYAIMRW 1056
FLVNG TSS S I + S P +E P N S+ ++RW
Sbjct: 61 F-FLVNG-TSSDSDIQFLDSPSVNGPSLEKYNPPANVTVQDNVSHFVIRW 108
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,848,450
Number of extensions: 1606829
Number of successful extensions: 10025
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 9858
Number of HSP's successfully gapped: 5
Length of query: 361
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 258
Effective length of database: 14,273,310
Effective search space: 3682513980
Effective search space used: 3682513980
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013264
(1085 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851626.1| PREDICTED: similar to interleukin 3 receptor, a... 200 2e-51
Alignment gi|XP_851588.1| PREDICTED: similar to Granulocyte-macrophage co... 84 2e-16
Alignment gi|XP_538150.2| PREDICTED: similar to Interleukin-13 receptor a... 52 1e-06
>ref|XP_851626.1| PREDICTED: similar to interleukin 3 receptor, alpha precursor [Canis
familiaris].
Length = 639
Score = 200 bits (508), Expect = 2e-51
Identities = 116/224 (51%), Positives = 148/224 (66%), Gaps = 4/224 (1%)
Frame = +1
Query: 409 LLSVHQDPDAPIRNLRIEPESGRLSWDLHGNVSEITCYINSKREKRKAQNNRYCAVQPIP 588
+L+ +DPD+PI+NLR+EP S RL+WDL GNVSEI C+INSK KA ++RYC +P
Sbjct: 214 VLARTRDPDSPIKNLRMEPGSRRLTWDLSGNVSEIKCFINSKYIT-KAIDSRYCQFYVLP 272
Query: 589 -CSVTNYTVSVNQGPPLSTFSTWLLYPE--PEGNPKAAAN-LTCWIHDVHFLTCRWARGR 756
C V N+T+SV Q PP FST L Y EG P AAA L CW+HDV FLTC W GR
Sbjct: 273 LCEVKNFTISVKQDPP---FSTGLQYVPRGAEGKPAAAARGLDCWVHDVDFLTCSWEVGR 329
Query: 757 AAPPDVRYRLYLENPLSHQMWECVHDEADPRGTHFQCRFDISALSDKLGRLARFLVNGST 936
AAP DV+YRLY + +++ EC EA+ RG H +CRFD + +L R +F VNG T
Sbjct: 330 AAPGDVQYRLYWRDLKAYREQECPRYEANNRGVHVRCRFDDVS---RLQRHIQFWVNG-T 385
Query: 937 SSGSRIPCSELTSQLSPMEILTAPHITNSWCNQSYAIMRWTVQS 1068
S S IPCS+L +L +E L+ PHIT + CN+SY++M W V S
Sbjct: 386 SRRSGIPCSDLCVELPEIERLSPPHIT-ATCNKSYSMMEWKVLS 428
>ref|XP_851588.1| PREDICTED: similar to Granulocyte-macrophage colony-stimulating
factor receptor alpha chain precursor (GM-CSF-R-alpha)
(GMR) (CDw116) (CD116 antigen) [Canis familiaris].
Length = 495
Score = 84.0 bits (206), Expect = 2e-16
Identities = 65/214 (30%), Positives = 99/214 (46%), Gaps = 8/214 (3%)
Frame = +1
Query: 439 PIRNLRIEPESGRLSWDLHGNVSEITCYINSKR----EKRKAQNNRYCAVQPIPCSV-TN 603
P N++ + LSWD N + + C + K E +N +C
Sbjct: 20 PSLNMKFDSRRMELSWDCKENTTYLECVMIHKEKGPIEIMLKENECHCKFPDYSLHEGVT 79
Query: 604 YTVSVN--QGPPLSTFSTWLLYPEPEGNPKAAANLTCWIHDVHFLTCRWARGRAAPPDVR 777
+ V VN Q P T L+Y G AA N +C+I++ +F+ C WA+G+AAP DV+
Sbjct: 80 FMVKVNSIQRPIPET----LVYTNSGGKGTAAQNFSCFIYNANFMNCTWAKGQAAPDDVQ 135
Query: 778 YRLYLENPLSHQMWECVHDEADPRGTHFQCRF-DISALSDKLGRLARFLVNGSTSSGSRI 954
Y LY+ + + EC H D GTH C D+S L+ FLVNG TS + I
Sbjct: 136 YFLYIRDLKYRRERECPHYLED-SGTHVGCHLEDLSGLA----YYNYFLVNG-TSQRTGI 189
Query: 955 PCSELTSQLSPMEILTAPHITNSWCNQSYAIMRW 1056
+ +EI + P+ + CN S+ +++W
Sbjct: 190 QFFDSILYWKKIEIYSPPNNISVHCNVSHCLIQW 223
>ref|XP_538150.2| PREDICTED: similar to Interleukin-13 receptor alpha-1 chain precursor
(IL-13R-alpha-1) (IL-13RA-1) (CD213a1 antigen) [Canis
familiaris].
Length = 450
Score = 51.6 bits (122), Expect = 1e-06
Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 4/135 (2%)
Frame = +1
Query: 664 PEPEGNPKAAAN-LTCWIHDVHFLTCRWARGRAAPPDVRYRLYLENPLSHQMWECVHDEA 840
P PEG+P++A L C H++ ++ C W GR PD Y LY + ++ +C ++
Sbjct: 142 PPPEGDPESAVTELQCVWHNLSYMKCTWLPGRNTSPDTNYTLYYWHSSLGKILQC--EDI 199
Query: 841 DPRGTHFQCRFDISALSDKLGRLARFLVNGSTSSGSRIPCSE---LTSQLSPMEILTAPH 1011
G H C F ++ L D + ++G P LTS + P PH
Sbjct: 200 YREGQHIGCSFALTNLKDSSFEQHSVQIVVKDNAGKIRPSFNIVPLTSHVKP----DPPH 255
Query: 1012 ITNSWCNQSYAIMRW 1056
I + ++W
Sbjct: 256 IKRLFFQNGNLYVQW 270
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 51,043,340
Number of extensions: 1662242
Number of successful extensions: 10419
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 10217
Number of HSP's successfully gapped: 3
Length of query: 361
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 257
Effective length of database: 15,407,560
Effective search space: 3959742920
Effective search space used: 3959742920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013264
(1085 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003362122.1| PREDICTED: granulocyte-macrophage colony-sti... 78 1e-14
>ref|XP_003362122.1| PREDICTED: granulocyte-macrophage colony-stimulating factor receptor
subunit alpha-like, partial [Sus scrofa].
Length = 260
Score = 77.8 bits (190), Expect = 1e-14
Identities = 53/153 (34%), Positives = 77/153 (50%), Gaps = 1/153 (0%)
Frame = +1
Query: 601 NYTVSVNQGPPLSTFSTWLLYPEPEGNPKAAANLTCWIHDVHFLTCRWARGRAAPPDVRY 780
++TV VN G S L+Y P AA N +C I++ F+ C WA+G+AAP D++Y
Sbjct: 20 SFTVKVNIGQ--RWISETLVYSNPGVEGTAAQNFSCLIYNADFMNCTWAKGQAAPNDIQY 77
Query: 781 RLYLENPLSHQMWECVHDEADPRGTHFQCRF-DISALSDKLGRLARFLVNGSTSSGSRIP 957
LY+ + EC +D GTH C +IS LS + FLVNG TS S I
Sbjct: 78 FLYIRDSKKKIERECPRYLSD-SGTHVGCHLQNISGLS----FYSYFLVNG-TSQKSGIQ 131
Query: 958 CSELTSQLSPMEILTAPHITNSWCNQSYAIMRW 1056
+ L +E P+ +CN+S+ ++W
Sbjct: 132 FFDSVLMLKEIERYNPPNNITVYCNESHCFIQW 164
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,627,379
Number of extensions: 1042880
Number of successful extensions: 6766
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6611
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 261
Effective length of database: 8,854,232
Effective search space: 2310954552
Effective search space used: 2310954552
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013264
(1085 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032395.1| interleukin-3 receptor subunit alpha precursor ... 80 3e-15
Alignment gi|NP_034100.2| granulocyte-macrophage colony-stimulating facto... 77 3e-14
Alignment gi|XP_001474061.2| PREDICTED: hypothetical protein LOC100045292... 63 3e-10
>ref|NP_032395.1| interleukin-3 receptor subunit alpha precursor [Mus musculus].
Length = 396
Score = 80.1 bits (196), Expect = 3e-15
Identities = 79/263 (30%), Positives = 116/263 (44%), Gaps = 29/263 (11%)
Frame = +1
Query: 367 AFLWLAVLLMPV--SCLLSVHQDPDA----PIRNLRIEPESGRLSWDLHGNVSEITCYIN 528
A LWL + L+ S L +V + P PI+NL I+P LSWD T
Sbjct: 3 ANLWLILGLLASHSSDLAAVREAPPTAVTTPIQNLHIDPAHYTLSWDPAPGADITTGAFC 62
Query: 529 SKREKRKAQNN---RYCAVQPIP-CSVTNYTVSVNQGPPLSTFSTWLLYPEPEGNPKAAA 696
K + C+ Q + C VTN+TV + G + + P+ +G+ +AAA
Sbjct: 63 RKGRDIFVWADPGLARCSFQSLSLCHVTNFTVFL--GKDRAVAGSIQFPPDDDGDHEAAA 120
Query: 697 -NLTCWIHDVHFLTCRWARGRAAPPDVRYRLYLEN----PLSHQMWECVHDEA------- 840
+L CW+H+ L+C+W RG A DV YR++ + P ++ EC H +
Sbjct: 121 QDLRCWVHEGQ-LSCQWERGPKATGDVHYRMFWRDVRLGPAHNR--ECPHYHSLDVNTAG 177
Query: 841 -DPRGTHFQCRFDISAL------SDKLGRLARFLVNGSTSSGSRIPCSELTSQLSPMEIL 999
P G H C D+ + S L VNGS +G +PC + T L E+L
Sbjct: 178 PAPHGGHEGCTLDLDTVLGSTPNSPDLVPQVTITVNGSGRAGP-VPCMDNTVDLQRAEVL 236
Query: 1000 TAPHITNSWCNQSYAIMRWTVQS 1068
P +T CN S A RW ++
Sbjct: 237 APPTLTVE-CNGSEAHARWVARN 258
>ref|NP_034100.2| granulocyte-macrophage colony-stimulating factor receptor subunit
alpha precursor [Mus musculus].
Length = 388
Score = 76.6 bits (187), Expect = 3e-14
Identities = 73/248 (29%), Positives = 107/248 (43%), Gaps = 8/248 (3%)
Frame = +1
Query: 352 TCVAMAFLWLAVLLMPVSCLLSVHQDPDA-PIRNLRIEPESGRLSWDLH---GNVSEITC 519
T +A L + LL+P + L PDA NL +P + L+W GNV+ +C
Sbjct: 10 TPLAQLALLFSTLLLPGTQALLAPTTPDAGSALNLTFDPWTRTLTWACDTAAGNVTVTSC 69
Query: 520 YINSKR---EKRKAQNNRYCAVQPIPCSVTNYTVSVNQGPPLSTFSTWLLYPEPEGNPKA 690
+ S+ +R + C + + T+ VN G + W L EG +
Sbjct: 70 TVTSREAGIHRRVSPFGCRCWFRRMMALHHGVTLDVN-GTVGGAAAHWRLSFVNEGAAGS 128
Query: 691 AA-NLTCWIHDVHFLTCRWARGRAAPPDVRYRLYLENPLSHQMWECVHDEADPRGTHFQC 867
A NLTC I FL+C W G AAP DVRY L + N H + C+ D D T QC
Sbjct: 129 GAENLTCEIRAARFLSCAWREGPAAPADVRYSLRVLNSTGHDVARCMADPGDDVIT--QC 186
Query: 868 RFDISALSDKLGRLARFLVNGSTSSGSRIPCSELTSQLSPMEILTAPHITNSWCNQSYAI 1047
+ +L LG A +V G + +G ++ + +E L P + CN S+
Sbjct: 187 IANDLSL---LGSEAYLVVTGRSGAGPVRFLDDVVA-TKALERLGPPRDVTASCNSSHCT 242
Query: 1048 MRWTVQST 1071
+ W ST
Sbjct: 243 VSWAPPST 250
>ref|XP_001474061.2| PREDICTED: hypothetical protein LOC100045292 [Mus musculus].
Length = 419
Score = 63.2 bits (152), Expect = 3e-10
Identities = 43/127 (33%), Positives = 59/127 (46%)
Frame = +1
Query: 691 AANLTCWIHDVHFLTCRWARGRAAPPDVRYRLYLENPLSHQMWECVHDEADPRGTHFQCR 870
A NLTC I FL+C W G AAP DVRY L + N H + C+ D D T QC
Sbjct: 234 AENLTCEIRAARFLSCAWREGPAAPADVRYSLRVLNSTGHDVARCMADPGDDVIT--QCI 291
Query: 871 FDISALSDKLGRLARFLVNGSTSSGSRIPCSELTSQLSPMEILTAPHITNSWCNQSYAIM 1050
+ +L LG A +V G + +G ++ + +E L P + CN S+ +
Sbjct: 292 ANDLSL---LGSEAYLVVTGRSGAGPVRFLDDVVA-TKALERLDPPRDVTASCNSSHCTV 347
Query: 1051 RWTVQST 1071
W ST
Sbjct: 348 SWAPPST 354
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,793,035
Number of extensions: 1315724
Number of successful extensions: 7426
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7288
Number of HSP's successfully gapped: 4
Length of query: 361
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 258
Effective length of database: 12,523,851
Effective search space: 3231153558
Effective search space used: 3231153558
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013264
(1085 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002174.1| interleukin-3 receptor subunit alpha precursor ... 190 2e-48
Alignment gi|NP_001155003.1| granulocyte-macrophage colony-stimulating fa... 89 5e-18
Alignment gi|NP_001155002.1| granulocyte-macrophage colony-stimulating fa... 89 5e-18
Alignment gi|NP_001155001.1| granulocyte-macrophage colony-stimulating fa... 89 5e-18
Alignment gi|NP_758450.1| granulocyte-macrophage colony-stimulating facto... 89 5e-18
Alignment gi|NP_758449.1| granulocyte-macrophage colony-stimulating facto... 89 5e-18
Alignment gi|NP_758448.1| granulocyte-macrophage colony-stimulating facto... 89 5e-18
Alignment gi|NP_006131.2| granulocyte-macrophage colony-stimulating facto... 89 5e-18
Alignment gi|NP_758452.1| granulocyte-macrophage colony-stimulating facto... 82 7e-16
Alignment gi|NP_001551.1| interleukin-13 receptor subunit alpha-1 precurs... 55 1e-07
>ref|NP_002174.1| interleukin-3 receptor subunit alpha precursor [Homo sapiens].
Length = 378
Score = 190 bits (483), Expect = 2e-48
Identities = 107/238 (44%), Positives = 145/238 (60%), Gaps = 3/238 (1%)
Frame = +1
Query: 364 MAFLWLAVLLMPVSCLLSVHQDPDAPIRNLRIEPESGRLSWDLHGNVSEITCYINSKREK 543
M LWL +LL+ + CLL +DP+ PI NLR++ ++ +L+WDL+ NV++I C +
Sbjct: 1 MVLLWLTLLLIALPCLLQTKEDPNPPITNLRMKAKAQQLTWDLNRNVTDIEC-VKDADYS 59
Query: 544 RKAQNNRYCAVQPIP-CSVTNYTVSVNQGPPLSTFSTWLLYPEPEGNPKAAA-NLTCWIH 717
A NN YC I C VTNYTV V P FSTW+L+PE G P A A NLTCWIH
Sbjct: 60 MPAVNNSYCQFGAISLCEVTNYTVRVANPP----FSTWILFPENSGKPWAGAENLTCWIH 115
Query: 718 DVHFLTCRWARGRAAPPDVRYRLYLENPLSHQMWECVHDEADPRGTHFQCRF-DISALSD 894
DV FL+C WA G AP DV+Y LYL Q +EC+H + D +GT CRF DIS LS
Sbjct: 116 DVDFLSCSWAVGPGAPADVQYDLYLNVANRRQQYECLHYKTDAQGTRIGCRFDDISRLSS 175
Query: 895 KLGRLARFLVNGSTSSGSRIPCSELTSQLSPMEILTAPHITNSWCNQSYAIMRWTVQS 1068
+ + LV G S+ IPC++ S +EILT P++T + CN++++ M W ++S
Sbjct: 176 G-SQSSHILVRG-RSAAFGIPCTDKFVVFSQIEILTPPNMT-AKCNKTHSFMHWKMRS 230
>ref|NP_001155003.1| granulocyte-macrophage colony-stimulating factor receptor subunit
alpha isoform g precursor [Homo sapiens].
Length = 410
Score = 89.4 bits (220), Expect = 5e-18
Identities = 63/208 (30%), Positives = 91/208 (43%), Gaps = 5/208 (2%)
Frame = +1
Query: 448 NLRIEPESGRLSWDLHGNVSEITCYINSKR----EKRKAQNNRYCAVQPIPCSVTNYTVS 615
N+R + + LSWD N + C++ K+ E R + N C + I C T
Sbjct: 37 NVRFDSRTMNLSWDCQENTTFSKCFLTDKKNRVVEPRLSNNECSCTFREI-CLHEGVTFE 95
Query: 616 VNQGPPLSTFSTWLLYPEPEGNPKAAANLTCWIHDVHFLTCRWARGRAAPPDVRYRLYLE 795
V+ F LLYP AA N +C+I++ + C WARG AP DV+Y LY+
Sbjct: 96 VHVNTSQRGFQQKLLYPNSGREGTAAQNFSCFIYNADLMNCTWARGPTAPRDVQYFLYIR 155
Query: 796 NPLSHQMWECVHDEADPRGTHFQCRFD-ISALSDKLGRLARFLVNGSTSSGSRIPCSELT 972
N + C + D GTH C D +S L+ + FLVNG TS I +
Sbjct: 156 NSKRRREIRCPYYIQD-SGTHVGCHLDNLSGLTSR----NYFLVNG-TSREIGIQFFDSL 209
Query: 973 SQLSPMEILTAPHITNSWCNQSYAIMRW 1056
+E P CN ++ ++RW
Sbjct: 210 LDTKKIERFNPPSNVTVRCNTTHCLVRW 237
>ref|NP_001155002.1| granulocyte-macrophage colony-stimulating factor receptor subunit
alpha isoform f precursor [Homo sapiens].
Length = 434
Score = 89.4 bits (220), Expect = 5e-18
Identities = 63/208 (30%), Positives = 91/208 (43%), Gaps = 5/208 (2%)
Frame = +1
Query: 448 NLRIEPESGRLSWDLHGNVSEITCYINSKR----EKRKAQNNRYCAVQPIPCSVTNYTVS 615
N+R + + LSWD N + C++ K+ E R + N C + I C T
Sbjct: 37 NVRFDSRTMNLSWDCQENTTFSKCFLTDKKNRVVEPRLSNNECSCTFREI-CLHEGVTFE 95
Query: 616 VNQGPPLSTFSTWLLYPEPEGNPKAAANLTCWIHDVHFLTCRWARGRAAPPDVRYRLYLE 795
V+ F LLYP AA N +C+I++ + C WARG AP DV+Y LY+
Sbjct: 96 VHVNTSQRGFQQKLLYPNSGREGTAAQNFSCFIYNADLMNCTWARGPTAPRDVQYFLYIR 155
Query: 796 NPLSHQMWECVHDEADPRGTHFQCRFD-ISALSDKLGRLARFLVNGSTSSGSRIPCSELT 972
N + C + D GTH C D +S L+ + FLVNG TS I +
Sbjct: 156 NSKRRREIRCPYYIQD-SGTHVGCHLDNLSGLTSR----NYFLVNG-TSREIGIQFFDSL 209
Query: 973 SQLSPMEILTAPHITNSWCNQSYAIMRW 1056
+E P CN ++ ++RW
Sbjct: 210 LDTKKIERFNPPSNVTVRCNTTHCLVRW 237
>ref|NP_001155001.1| granulocyte-macrophage colony-stimulating factor receptor subunit
alpha isoform a precursor [Homo sapiens].
Length = 400
Score = 89.4 bits (220), Expect = 5e-18
Identities = 63/208 (30%), Positives = 91/208 (43%), Gaps = 5/208 (2%)
Frame = +1
Query: 448 NLRIEPESGRLSWDLHGNVSEITCYINSKR----EKRKAQNNRYCAVQPIPCSVTNYTVS 615
N+R + + LSWD N + C++ K+ E R + N C + I C T
Sbjct: 37 NVRFDSRTMNLSWDCQENTTFSKCFLTDKKNRVVEPRLSNNECSCTFREI-CLHEGVTFE 95
Query: 616 VNQGPPLSTFSTWLLYPEPEGNPKAAANLTCWIHDVHFLTCRWARGRAAPPDVRYRLYLE 795
V+ F LLYP AA N +C+I++ + C WARG AP DV+Y LY+
Sbjct: 96 VHVNTSQRGFQQKLLYPNSGREGTAAQNFSCFIYNADLMNCTWARGPTAPRDVQYFLYIR 155
Query: 796 NPLSHQMWECVHDEADPRGTHFQCRFD-ISALSDKLGRLARFLVNGSTSSGSRIPCSELT 972
N + C + D GTH C D +S L+ + FLVNG TS I +
Sbjct: 156 NSKRRREIRCPYYIQD-SGTHVGCHLDNLSGLTSR----NYFLVNG-TSREIGIQFFDSL 209
Query: 973 SQLSPMEILTAPHITNSWCNQSYAIMRW 1056
+E P CN ++ ++RW
Sbjct: 210 LDTKKIERFNPPSNVTVRCNTTHCLVRW 237
>ref|NP_758450.1| granulocyte-macrophage colony-stimulating factor receptor subunit
alpha isoform c precursor [Homo sapiens].
Length = 333
Score = 89.4 bits (220), Expect = 5e-18
Identities = 63/208 (30%), Positives = 91/208 (43%), Gaps = 5/208 (2%)
Frame = +1
Query: 448 NLRIEPESGRLSWDLHGNVSEITCYINSKR----EKRKAQNNRYCAVQPIPCSVTNYTVS 615
N+R + + LSWD N + C++ K+ E R + N C + I C T
Sbjct: 37 NVRFDSRTMNLSWDCQENTTFSKCFLTDKKNRVVEPRLSNNECSCTFREI-CLHEGVTFE 95
Query: 616 VNQGPPLSTFSTWLLYPEPEGNPKAAANLTCWIHDVHFLTCRWARGRAAPPDVRYRLYLE 795
V+ F LLYP AA N +C+I++ + C WARG AP DV+Y LY+
Sbjct: 96 VHVNTSQRGFQQKLLYPNSGREGTAAQNFSCFIYNADLMNCTWARGPTAPRDVQYFLYIR 155
Query: 796 NPLSHQMWECVHDEADPRGTHFQCRFD-ISALSDKLGRLARFLVNGSTSSGSRIPCSELT 972
N + C + D GTH C D +S L+ + FLVNG TS I +
Sbjct: 156 NSKRRREIRCPYYIQD-SGTHVGCHLDNLSGLTSR----NYFLVNG-TSREIGIQFFDSL 209
Query: 973 SQLSPMEILTAPHITNSWCNQSYAIMRW 1056
+E P CN ++ ++RW
Sbjct: 210 LDTKKIERFNPPSNVTVRCNTTHCLVRW 237
>ref|NP_758449.1| granulocyte-macrophage colony-stimulating factor receptor subunit
alpha isoform b precursor [Homo sapiens].
Length = 377
Score = 89.4 bits (220), Expect = 5e-18
Identities = 63/208 (30%), Positives = 91/208 (43%), Gaps = 5/208 (2%)
Frame = +1
Query: 448 NLRIEPESGRLSWDLHGNVSEITCYINSKR----EKRKAQNNRYCAVQPIPCSVTNYTVS 615
N+R + + LSWD N + C++ K+ E R + N C + I C T
Sbjct: 37 NVRFDSRTMNLSWDCQENTTFSKCFLTDKKNRVVEPRLSNNECSCTFREI-CLHEGVTFE 95
Query: 616 VNQGPPLSTFSTWLLYPEPEGNPKAAANLTCWIHDVHFLTCRWARGRAAPPDVRYRLYLE 795
V+ F LLYP AA N +C+I++ + C WARG AP DV+Y LY+
Sbjct: 96 VHVNTSQRGFQQKLLYPNSGREGTAAQNFSCFIYNADLMNCTWARGPTAPRDVQYFLYIR 155
Query: 796 NPLSHQMWECVHDEADPRGTHFQCRFD-ISALSDKLGRLARFLVNGSTSSGSRIPCSELT 972
N + C + D GTH C D +S L+ + FLVNG TS I +
Sbjct: 156 NSKRRREIRCPYYIQD-SGTHVGCHLDNLSGLTSR----NYFLVNG-TSREIGIQFFDSL 209
Query: 973 SQLSPMEILTAPHITNSWCNQSYAIMRW 1056
+E P CN ++ ++RW
Sbjct: 210 LDTKKIERFNPPSNVTVRCNTTHCLVRW 237
>ref|NP_758448.1| granulocyte-macrophage colony-stimulating factor receptor subunit
alpha isoform a precursor [Homo sapiens].
Length = 400
Score = 89.4 bits (220), Expect = 5e-18
Identities = 63/208 (30%), Positives = 91/208 (43%), Gaps = 5/208 (2%)
Frame = +1
Query: 448 NLRIEPESGRLSWDLHGNVSEITCYINSKR----EKRKAQNNRYCAVQPIPCSVTNYTVS 615
N+R + + LSWD N + C++ K+ E R + N C + I C T
Sbjct: 37 NVRFDSRTMNLSWDCQENTTFSKCFLTDKKNRVVEPRLSNNECSCTFREI-CLHEGVTFE 95
Query: 616 VNQGPPLSTFSTWLLYPEPEGNPKAAANLTCWIHDVHFLTCRWARGRAAPPDVRYRLYLE 795
V+ F LLYP AA N +C+I++ + C WARG AP DV+Y LY+
Sbjct: 96 VHVNTSQRGFQQKLLYPNSGREGTAAQNFSCFIYNADLMNCTWARGPTAPRDVQYFLYIR 155
Query: 796 NPLSHQMWECVHDEADPRGTHFQCRFD-ISALSDKLGRLARFLVNGSTSSGSRIPCSELT 972
N + C + D GTH C D +S L+ + FLVNG TS I +
Sbjct: 156 NSKRRREIRCPYYIQD-SGTHVGCHLDNLSGLTSR----NYFLVNG-TSREIGIQFFDSL 209
Query: 973 SQLSPMEILTAPHITNSWCNQSYAIMRW 1056
+E P CN ++ ++RW
Sbjct: 210 LDTKKIERFNPPSNVTVRCNTTHCLVRW 237
>ref|NP_006131.2| granulocyte-macrophage colony-stimulating factor receptor subunit
alpha isoform a precursor [Homo sapiens].
Length = 400
Score = 89.4 bits (220), Expect = 5e-18
Identities = 63/208 (30%), Positives = 91/208 (43%), Gaps = 5/208 (2%)
Frame = +1
Query: 448 NLRIEPESGRLSWDLHGNVSEITCYINSKR----EKRKAQNNRYCAVQPIPCSVTNYTVS 615
N+R + + LSWD N + C++ K+ E R + N C + I C T
Sbjct: 37 NVRFDSRTMNLSWDCQENTTFSKCFLTDKKNRVVEPRLSNNECSCTFREI-CLHEGVTFE 95
Query: 616 VNQGPPLSTFSTWLLYPEPEGNPKAAANLTCWIHDVHFLTCRWARGRAAPPDVRYRLYLE 795
V+ F LLYP AA N +C+I++ + C WARG AP DV+Y LY+
Sbjct: 96 VHVNTSQRGFQQKLLYPNSGREGTAAQNFSCFIYNADLMNCTWARGPTAPRDVQYFLYIR 155
Query: 796 NPLSHQMWECVHDEADPRGTHFQCRFD-ISALSDKLGRLARFLVNGSTSSGSRIPCSELT 972
N + C + D GTH C D +S L+ + FLVNG TS I +
Sbjct: 156 NSKRRREIRCPYYIQD-SGTHVGCHLDNLSGLTSR----NYFLVNG-TSREIGIQFFDSL 209
Query: 973 SQLSPMEILTAPHITNSWCNQSYAIMRW 1056
+E P CN ++ ++RW
Sbjct: 210 LDTKKIERFNPPSNVTVRCNTTHCLVRW 237
>ref|NP_758452.1| granulocyte-macrophage colony-stimulating factor receptor subunit
alpha isoform e precursor [Homo sapiens].
Length = 233
Score = 82.4 bits (202), Expect = 7e-16
Identities = 54/168 (32%), Positives = 78/168 (46%), Gaps = 5/168 (2%)
Frame = +1
Query: 448 NLRIEPESGRLSWDLHGNVSEITCYINSKR----EKRKAQNNRYCAVQPIPCSVTNYTVS 615
N+R + + LSWD N + C++ K+ E R + N C + I C T
Sbjct: 37 NVRFDSRTMNLSWDCQENTTFSKCFLTDKKNRVVEPRLSNNECSCTFREI-CLHEGVTFE 95
Query: 616 VNQGPPLSTFSTWLLYPEPEGNPKAAANLTCWIHDVHFLTCRWARGRAAPPDVRYRLYLE 795
V+ F LLYP AA N +C+I++ + C WARG AP DV+Y LY+
Sbjct: 96 VHVNTSQRGFQQKLLYPNSGREGTAAQNFSCFIYNADLMNCTWARGPTAPRDVQYFLYIR 155
Query: 796 NPLSHQMWECVHDEADPRGTHFQCRFD-ISALSDKLGRLARFLVNGST 936
N + C + D GTH C D +S L+ + FLVNG++
Sbjct: 156 NSKRRREIRCPYYIQD-SGTHVGCHLDNLSGLTSR----NYFLVNGTS 198
>ref|NP_001551.1| interleukin-13 receptor subunit alpha-1 precursor [Homo sapiens].
Length = 427
Score = 55.1 bits (131), Expect = 1e-07
Identities = 45/186 (24%), Positives = 76/186 (40%), Gaps = 7/186 (3%)
Frame = +1
Query: 520 YINSKREKRKAQNNRYCAVQPIP---CSVTNYTVSVNQGPPLSTFSTWLLYPEPEGNPKA 690
+ K++K+ A R P+ C S N+ S + P PEG+P++
Sbjct: 69 HFGDKQDKKIAPETRRSIEVPLNERICLQVGSQCSTNESEKPSILVEKCISP-PEGDPES 127
Query: 691 AAN-LTCWIHDVHFLTCRWARGRAAPPDVRYRLYLENPLSHQMWECVHDEADPRGTHFQC 867
A L C H++ ++ C W GR PD Y LY + ++ +C + G +F C
Sbjct: 128 AVTELQCIWHNLSYMKCSWLPGRNTSPDTNYTLYYWHRSLEKIHQC--ENIFREGQYFGC 185
Query: 868 RFDISALSDKLGRLARFLVNGSTSSGSRIPCSE---LTSQLSPMEILTAPHITNSWCNQS 1038
FD++ + D + ++G P LTS++ P PHI N +
Sbjct: 186 SFDLTKVKDSSFEQHSVQIMVKDNAGKIKPSFNIVPLTSRVKP----DPPHIKNLSFHND 241
Query: 1039 YAIMRW 1056
++W
Sbjct: 242 DLYVQW 247
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,781,723
Number of extensions: 1609563
Number of successful extensions: 9780
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 9580
Number of HSP's successfully gapped: 11
Length of query: 361
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 257
Effective length of database: 14,868,908
Effective search space: 3821309356
Effective search space used: 3821309356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013264
(1085 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896402.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 246 2e-62
gb|GL896045.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 198 4e-48
gb|GL892657.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 168 4e-39
gb|GL896347.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 165 6e-38
>gb|GL896402.1| Sus scrofa unplaced genomic scaffold chrU_scaffold746
Length = 9599
Score = 246 bits (124), Expect = 2e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 427 gatccagacgcaccgattaggaacttaaggatagagccggaaagtggacggctgagctgg 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8651 gatccagacgcaccgattaggaacttaaggatagagccggaaagtggacggctgagctgg 8710
Query: 487 gacctccacggaaatgtctccgaaattacgtgttacatcaattcgaaacgtgaaaagcga 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8711 gacctccacggaaatgtctccgaaattacgtgttacatcaattcgaaacgtgaaaagcga 8770
Query: 547 aagg 550
||||
Sbjct: 8771 aagg 8774
Score = 93.7 bits (47), Expect = 2e-16
Identities = 47/47 (100%)
Strand = Plus / Plus
Query: 759 ggcgcccccggacgtgcgctaccgtctctacctggagaatccactgt 805
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9372 ggcgcccccggacgtgcgctaccgtctctacctggagaatccactgt 9418
>gb|GL896045.1| Sus scrofa unplaced genomic scaffold chrU_scaffold455
Length = 1132
Score = 198 bits (100), Expect = 4e-48
Identities = 103/104 (99%)
Strand = Plus / Minus
Query: 570 cgccgttcagcccatcccatgctcagtgaccaactacacggtctccgtgaaccaagggcc 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 cgccgttcagcccatcccatgctcagtgaccaactacacggtctccgtgaaccaagggcc 69
Query: 630 gccgttgtccacgttctccacgtggctcctgtatcctgagccag 673
||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 68 gccgttgtccacgttctccacgtggatcctgtatcctgagccag 25
>gb|GL892657.1| Sus scrofa unplaced genomic scaffold chrU_scaffold150
Length = 188
Score = 168 bits (85), Expect = 4e-39
Identities = 88/89 (98%)
Strand = Plus / Minus
Query: 151 ctctttctctttccagaggctgcctgcatttcagccgtgaaaataagaccgtgaggagcc 210
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 89 ctctttctctttccagaggctgcctgcatttcagccgtgaaaataagaccctgaggagcc 30
Query: 211 aaggatacccctgcccctggcccctcgtg 239
|||||||||||||||||||||||||||||
Sbjct: 29 aaggatacccctgcccctggcccctcgtg 1
>gb|GL896347.1| Sus scrofa unplaced genomic scaffold chrU_scaffold697
Length = 12539
Score = 165 bits (83), Expect = 6e-38
Identities = 93/95 (97%), Gaps = 1/95 (1%)
Strand = Plus / Minus
Query: 992 agatactcaccgccccccacatcacaaacagttggtgtaaccaaagctatgctatcatgc 1051
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10692 agatactcaccgcccccaacatcacaaacagttggtgtaaccaaagctatgctatcatgc 10633
Query: 1052 ggtggacagtgcaaagt-actttaactttcatttc 1085
||||||||||||||||| |||||||||||||||||
Sbjct: 10632 ggtggacagtgcaaagtaactttaactttcatttc 10598
Score = 83.8 bits (42), Expect = 2e-13
Identities = 45/46 (97%)
Strand = Plus / Minus
Query: 946 tccagaatcccctgctccgaacttacgagccaactgtccccgatgg 991
||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 12539 tccagaatcccctgctctgaacttacgagccaactgtccccgatgg 12494
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,313,100
Number of extensions: 159
Number of successful extensions: 159
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 6
Length of query: 1085
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1064
Effective length of database: 2,808,413,156
Effective search space: 2988151597984
Effective search space used: 2988151597984
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)