Animal-Genome cDNA 20110601C-013264


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013264
         (1085 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_002684050.1| PREDICTED: interleukin 3 receptor, alpha-lik...   140   1e-33
Alignment   gi|XP_002686644.1| PREDICTED: colony stimulating factor 2 recep...    89   5e-18
Alignment   gi|NP_001193606.1| interleukin-13 receptor subunit alpha-1 [Bos...    56   6e-08
Alignment   gi|XP_002686633.1| PREDICTED: colony stimulating factor 2 recep...    55   1e-07

>ref|XP_002684050.1| PREDICTED: interleukin 3 receptor, alpha-like, partial [Bos
           taurus].
          Length = 427

 Score =  140 bits (354), Expect = 1e-33
 Identities = 72/127 (56%), Positives = 89/127 (70%), Gaps = 1/127 (0%)
 Frame = +1

Query: 427 DPDAPIRNLRIEPESGRLSWDLHGNVSEITCYINSKREKRKAQNNRYCAVQPIPCSVTNY 606
           DPD PI+NLRI+PE  RL+WD HGNVSEI CY+NSK  K KA    YC++  + C V NY
Sbjct: 3   DPDPPIKNLRIDPERKRLAWDQHGNVSEIGCYVNSKILK-KAIEKPYCSLGDLSCEVKNY 61

Query: 607 TVSVNQGPPLSTFSTWLLYPEPEGNPKAAA-NLTCWIHDVHFLTCRWARGRAAPPDVRYR 783
           TV V +G P   FS W+ YP+ +GNP AAA NLTC +HDV  L+C WA G  AP +V+Y 
Sbjct: 62  TVKVIKGQP---FSAWIQYPK-QGNPLAAADNLTCRVHDVDQLSCSWAVGEEAPANVQYH 117

Query: 784 LYLENPL 804
            YL++PL
Sbjct: 118 FYLKHPL 124



 Score = 87.4 bits (215), Expect = 2e-17
 Identities = 48/115 (41%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
 Frame = +1

Query: 739  RWARGRAA--PPDVRYRLYLENPLSHQMWECVHDEADPRGTHFQCRFDISALSDKLGRLA 912
            R  RG A+  PPD   R       + + W C     + +G + QC FD  +L  +   L 
Sbjct: 172  RGFRGGASGSPPDPAPRACCP---ARKTWPCPKYMQNQQGVNVQCHFDSLSLQPERQTLF 228

Query: 913  RFLVNGSTSSGSRIPCSELTSQLSPMEILTAPHITNSWCNQSYAIMRWTVQSTLT 1077
            RFLVNG TS GS+IPC ++T +L  +EIL AP+IT  WCN++Y+ M W V+S  T
Sbjct: 229  RFLVNG-TSGGSKIPCRQMTHRLEEIEILAAPNITKKWCNENYSFMEWEVRSLFT 282


>ref|XP_002686644.1| PREDICTED: colony stimulating factor 2 receptor alpha chain-like [Bos
            taurus].
          Length = 348

 Score = 89.4 bits (220), Expect = 5e-18
 Identities = 68/221 (30%), Positives = 104/221 (47%), Gaps = 12/221 (5%)
 Frame = +1

Query: 430  PDAPIRNLRIEPESGRLSWDLHGNVSEITCYINSKRE---KRKAQNNRYCAVQPIPCSVT 600
            P+A + N++ +P++ +L+WD   N S   C +  K +   K+K +++         C  T
Sbjct: 21   PNASL-NVKFDPQTTKLTWDCRENASSGECVLIHKEKGPIKKKVKDSE--------CQCT 71

Query: 601  NYTVSVNQGPPLST--------FSTWLLYPEPEGNPKAAANLTCWIHDVHFLTCRWARGR 756
                S++ G  L+          S  L+Y  P     AA N +C I+D  F+ C WA+GR
Sbjct: 72   FQDYSLHGGVTLTVEVHVNQRRLSEMLVYTNPGREGTAAQNFSCVIYDADFMNCSWAKGR 131

Query: 757  AAPPDVRYRLYLENPLSHQMWECVHDEADPRGTHFQCRF-DISALSDKLGRLARFLVNGS 933
            AAP DV+Y LY+ +    +  EC     D  GTH  C   D+S L+        FLVNG 
Sbjct: 132  AAPDDVQYFLYIRSKKRIER-ECPRYLKD-SGTHVGCHLQDLSGLTS----YNYFLVNG- 184

Query: 934  TSSGSRIPCSELTSQLSPMEILTAPHITNSWCNQSYAIMRW 1056
            TS  + I   +    L  +E    P      CN+S+ ++RW
Sbjct: 185  TSQETGIQFFDSVLLLKEIEQYNPPDNITVQCNESHCLIRW 225


>ref|NP_001193606.1| interleukin-13 receptor subunit alpha-1 [Bos taurus].
          Length = 424

 Score = 55.8 bits (133), Expect = 6e-08
 Identities = 49/192 (25%), Positives = 74/192 (38%), Gaps = 4/192 (2%)
 Frame = +1

Query: 496  GNVSEITCYINSKREKRKAQNNRYCAVQPIPCSVTNYTVSVNQGPPLSTFSTWLLYPEPE 675
            GN  +      + R K    N R C      CS        N+    S      + P PE
Sbjct: 68   GNKQDKKIAPETHRSKEVPLNERICLQVGSQCST-------NESEKPSILVEKCISP-PE 119

Query: 676  GNPKAAAN-LTCWIHDVHFLTCRWARGRAAPPDVRYRLYLENPLSHQMWECVHDEADPRG 852
            G+P++A   L C  H++ ++ C W  GR A PD  Y LY  +    ++ +C  +     G
Sbjct: 120  GDPESAVTELQCIWHNLRYMKCTWLPGRNASPDTNYTLYYWHNSLGKILQC--ENIYREG 177

Query: 853  THFQCRFDISALSDKLGRLARFLVNGSTSSGSRIPCSE---LTSQLSPMEILTAPHITNS 1023
             H  C F+++ + D         V    ++G   P      LTS + P      PHI N 
Sbjct: 178  QHIACSFNLTKVKDSSFEQHSVQVMVKDNAGKIRPSFNIVPLTSHVKP----DPPHIKNL 233

Query: 1024 WCNQSYAIMRWT 1059
                    ++WT
Sbjct: 234  SFQNGDLYVQWT 245


>ref|XP_002686633.1| PREDICTED: colony stimulating factor 2 receptor alpha chain-like [Bos
            taurus].
          Length = 300

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 40/110 (36%), Positives = 49/110 (44%), Gaps = 1/110 (0%)
 Frame = +1

Query: 730  LTCRWARGRAAPPDVRYRLYLENPLSHQMWECVHDEADPRGTHFQCRFDISALSDKLGRL 909
            + C W RG AAP DV+Y+LY    L   + EC H   D  GT   C FD           
Sbjct: 1    MNCSWTRGPAAPADVQYQLYSWTSLHGNVSECSHYVLDSAGTRVGCHFDELGEGHTTDDY 60

Query: 910  ARFLVNGSTSSGSRIPCSELTSQLSP-MEILTAPHITNSWCNQSYAIMRW 1056
              FLVNG TSS S I   +  S   P +E    P       N S+ ++RW
Sbjct: 61   F-FLVNG-TSSDSDIQFLDSPSVNGPSLEKYNPPANVTVQDNVSHFVIRW 108


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,848,450
Number of extensions: 1606829
Number of successful extensions: 10025
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 9858
Number of HSP's successfully gapped: 5
Length of query: 361
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 258
Effective length of database: 14,273,310
Effective search space: 3682513980
Effective search space used: 3682513980
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013264
         (1085 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_851626.1| PREDICTED: similar to interleukin 3 receptor, a...   200   2e-51
Alignment   gi|XP_851588.1| PREDICTED: similar to Granulocyte-macrophage co...    84   2e-16
Alignment   gi|XP_538150.2| PREDICTED: similar to Interleukin-13 receptor a...    52   1e-06

>ref|XP_851626.1| PREDICTED: similar to interleukin 3 receptor, alpha precursor [Canis
            familiaris].
          Length = 639

 Score =  200 bits (508), Expect = 2e-51
 Identities = 116/224 (51%), Positives = 148/224 (66%), Gaps = 4/224 (1%)
 Frame = +1

Query: 409  LLSVHQDPDAPIRNLRIEPESGRLSWDLHGNVSEITCYINSKREKRKAQNNRYCAVQPIP 588
            +L+  +DPD+PI+NLR+EP S RL+WDL GNVSEI C+INSK    KA ++RYC    +P
Sbjct: 214  VLARTRDPDSPIKNLRMEPGSRRLTWDLSGNVSEIKCFINSKYIT-KAIDSRYCQFYVLP 272

Query: 589  -CSVTNYTVSVNQGPPLSTFSTWLLYPE--PEGNPKAAAN-LTCWIHDVHFLTCRWARGR 756
             C V N+T+SV Q PP   FST L Y     EG P AAA  L CW+HDV FLTC W  GR
Sbjct: 273  LCEVKNFTISVKQDPP---FSTGLQYVPRGAEGKPAAAARGLDCWVHDVDFLTCSWEVGR 329

Query: 757  AAPPDVRYRLYLENPLSHQMWECVHDEADPRGTHFQCRFDISALSDKLGRLARFLVNGST 936
            AAP DV+YRLY  +  +++  EC   EA+ RG H +CRFD  +   +L R  +F VNG T
Sbjct: 330  AAPGDVQYRLYWRDLKAYREQECPRYEANNRGVHVRCRFDDVS---RLQRHIQFWVNG-T 385

Query: 937  SSGSRIPCSELTSQLSPMEILTAPHITNSWCNQSYAIMRWTVQS 1068
            S  S IPCS+L  +L  +E L+ PHIT + CN+SY++M W V S
Sbjct: 386  SRRSGIPCSDLCVELPEIERLSPPHIT-ATCNKSYSMMEWKVLS 428


>ref|XP_851588.1| PREDICTED: similar to Granulocyte-macrophage colony-stimulating
            factor receptor alpha chain precursor (GM-CSF-R-alpha)
            (GMR) (CDw116) (CD116 antigen) [Canis familiaris].
          Length = 495

 Score = 84.0 bits (206), Expect = 2e-16
 Identities = 65/214 (30%), Positives = 99/214 (46%), Gaps = 8/214 (3%)
 Frame = +1

Query: 439  PIRNLRIEPESGRLSWDLHGNVSEITCYINSKR----EKRKAQNNRYCAVQPIPCSV-TN 603
            P  N++ +     LSWD   N + + C +  K     E    +N  +C            
Sbjct: 20   PSLNMKFDSRRMELSWDCKENTTYLECVMIHKEKGPIEIMLKENECHCKFPDYSLHEGVT 79

Query: 604  YTVSVN--QGPPLSTFSTWLLYPEPEGNPKAAANLTCWIHDVHFLTCRWARGRAAPPDVR 777
            + V VN  Q P   T    L+Y    G   AA N +C+I++ +F+ C WA+G+AAP DV+
Sbjct: 80   FMVKVNSIQRPIPET----LVYTNSGGKGTAAQNFSCFIYNANFMNCTWAKGQAAPDDVQ 135

Query: 778  YRLYLENPLSHQMWECVHDEADPRGTHFQCRF-DISALSDKLGRLARFLVNGSTSSGSRI 954
            Y LY+ +    +  EC H   D  GTH  C   D+S L+        FLVNG TS  + I
Sbjct: 136  YFLYIRDLKYRRERECPHYLED-SGTHVGCHLEDLSGLA----YYNYFLVNG-TSQRTGI 189

Query: 955  PCSELTSQLSPMEILTAPHITNSWCNQSYAIMRW 1056
               +       +EI + P+  +  CN S+ +++W
Sbjct: 190  QFFDSILYWKKIEIYSPPNNISVHCNVSHCLIQW 223


>ref|XP_538150.2| PREDICTED: similar to Interleukin-13 receptor alpha-1 chain precursor
            (IL-13R-alpha-1) (IL-13RA-1) (CD213a1 antigen) [Canis
            familiaris].
          Length = 450

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 4/135 (2%)
 Frame = +1

Query: 664  PEPEGNPKAAAN-LTCWIHDVHFLTCRWARGRAAPPDVRYRLYLENPLSHQMWECVHDEA 840
            P PEG+P++A   L C  H++ ++ C W  GR   PD  Y LY  +    ++ +C  ++ 
Sbjct: 142  PPPEGDPESAVTELQCVWHNLSYMKCTWLPGRNTSPDTNYTLYYWHSSLGKILQC--EDI 199

Query: 841  DPRGTHFQCRFDISALSDKLGRLARFLVNGSTSSGSRIPCSE---LTSQLSPMEILTAPH 1011
               G H  C F ++ L D         +    ++G   P      LTS + P      PH
Sbjct: 200  YREGQHIGCSFALTNLKDSSFEQHSVQIVVKDNAGKIRPSFNIVPLTSHVKP----DPPH 255

Query: 1012 ITNSWCNQSYAIMRW 1056
            I   +       ++W
Sbjct: 256  IKRLFFQNGNLYVQW 270


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 51,043,340
Number of extensions: 1662242
Number of successful extensions: 10419
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 10217
Number of HSP's successfully gapped: 3
Length of query: 361
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 257
Effective length of database: 15,407,560
Effective search space: 3959742920
Effective search space used: 3959742920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013264
         (1085 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003362122.1| PREDICTED: granulocyte-macrophage colony-sti...    78   1e-14

>ref|XP_003362122.1| PREDICTED: granulocyte-macrophage colony-stimulating factor receptor
            subunit alpha-like, partial [Sus scrofa].
          Length = 260

 Score = 77.8 bits (190), Expect = 1e-14
 Identities = 53/153 (34%), Positives = 77/153 (50%), Gaps = 1/153 (0%)
 Frame = +1

Query: 601  NYTVSVNQGPPLSTFSTWLLYPEPEGNPKAAANLTCWIHDVHFLTCRWARGRAAPPDVRY 780
            ++TV VN G      S  L+Y  P     AA N +C I++  F+ C WA+G+AAP D++Y
Sbjct: 20   SFTVKVNIGQ--RWISETLVYSNPGVEGTAAQNFSCLIYNADFMNCTWAKGQAAPNDIQY 77

Query: 781  RLYLENPLSHQMWECVHDEADPRGTHFQCRF-DISALSDKLGRLARFLVNGSTSSGSRIP 957
             LY+ +       EC    +D  GTH  C   +IS LS      + FLVNG TS  S I 
Sbjct: 78   FLYIRDSKKKIERECPRYLSD-SGTHVGCHLQNISGLS----FYSYFLVNG-TSQKSGIQ 131

Query: 958  CSELTSQLSPMEILTAPHITNSWCNQSYAIMRW 1056
              +    L  +E    P+    +CN+S+  ++W
Sbjct: 132  FFDSVLMLKEIERYNPPNNITVYCNESHCFIQW 164


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,627,379
Number of extensions: 1042880
Number of successful extensions: 6766
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6611
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 261
Effective length of database: 8,854,232
Effective search space: 2310954552
Effective search space used: 2310954552
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013264
         (1085 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_032395.1| interleukin-3 receptor subunit alpha precursor ...    80   3e-15
Alignment   gi|NP_034100.2| granulocyte-macrophage colony-stimulating facto...    77   3e-14
Alignment   gi|XP_001474061.2| PREDICTED: hypothetical protein LOC100045292...    63   3e-10

>ref|NP_032395.1| interleukin-3 receptor subunit alpha precursor [Mus musculus].
          Length = 396

 Score = 80.1 bits (196), Expect = 3e-15
 Identities = 79/263 (30%), Positives = 116/263 (44%), Gaps = 29/263 (11%)
 Frame = +1

Query: 367  AFLWLAVLLMPV--SCLLSVHQDPDA----PIRNLRIEPESGRLSWDLHGNVSEITCYIN 528
            A LWL + L+    S L +V + P      PI+NL I+P    LSWD        T    
Sbjct: 3    ANLWLILGLLASHSSDLAAVREAPPTAVTTPIQNLHIDPAHYTLSWDPAPGADITTGAFC 62

Query: 529  SKREKRKAQNN---RYCAVQPIP-CSVTNYTVSVNQGPPLSTFSTWLLYPEPEGNPKAAA 696
             K        +     C+ Q +  C VTN+TV +  G   +   +    P+ +G+ +AAA
Sbjct: 63   RKGRDIFVWADPGLARCSFQSLSLCHVTNFTVFL--GKDRAVAGSIQFPPDDDGDHEAAA 120

Query: 697  -NLTCWIHDVHFLTCRWARGRAAPPDVRYRLYLEN----PLSHQMWECVHDEA------- 840
             +L CW+H+   L+C+W RG  A  DV YR++  +    P  ++  EC H  +       
Sbjct: 121  QDLRCWVHEGQ-LSCQWERGPKATGDVHYRMFWRDVRLGPAHNR--ECPHYHSLDVNTAG 177

Query: 841  -DPRGTHFQCRFDISAL------SDKLGRLARFLVNGSTSSGSRIPCSELTSQLSPMEIL 999
              P G H  C  D+  +      S  L       VNGS  +G  +PC + T  L   E+L
Sbjct: 178  PAPHGGHEGCTLDLDTVLGSTPNSPDLVPQVTITVNGSGRAGP-VPCMDNTVDLQRAEVL 236

Query: 1000 TAPHITNSWCNQSYAIMRWTVQS 1068
              P +T   CN S A  RW  ++
Sbjct: 237  APPTLTVE-CNGSEAHARWVARN 258


>ref|NP_034100.2| granulocyte-macrophage colony-stimulating factor receptor subunit
            alpha precursor [Mus musculus].
          Length = 388

 Score = 76.6 bits (187), Expect = 3e-14
 Identities = 73/248 (29%), Positives = 107/248 (43%), Gaps = 8/248 (3%)
 Frame = +1

Query: 352  TCVAMAFLWLAVLLMPVSCLLSVHQDPDA-PIRNLRIEPESGRLSWDLH---GNVSEITC 519
            T +A   L  + LL+P +  L     PDA    NL  +P +  L+W      GNV+  +C
Sbjct: 10   TPLAQLALLFSTLLLPGTQALLAPTTPDAGSALNLTFDPWTRTLTWACDTAAGNVTVTSC 69

Query: 520  YINSKR---EKRKAQNNRYCAVQPIPCSVTNYTVSVNQGPPLSTFSTWLLYPEPEGNPKA 690
             + S+     +R +     C  + +       T+ VN G      + W L    EG   +
Sbjct: 70   TVTSREAGIHRRVSPFGCRCWFRRMMALHHGVTLDVN-GTVGGAAAHWRLSFVNEGAAGS 128

Query: 691  AA-NLTCWIHDVHFLTCRWARGRAAPPDVRYRLYLENPLSHQMWECVHDEADPRGTHFQC 867
             A NLTC I    FL+C W  G AAP DVRY L + N   H +  C+ D  D   T  QC
Sbjct: 129  GAENLTCEIRAARFLSCAWREGPAAPADVRYSLRVLNSTGHDVARCMADPGDDVIT--QC 186

Query: 868  RFDISALSDKLGRLARFLVNGSTSSGSRIPCSELTSQLSPMEILTAPHITNSWCNQSYAI 1047
              +  +L   LG  A  +V G + +G      ++ +    +E L  P    + CN S+  
Sbjct: 187  IANDLSL---LGSEAYLVVTGRSGAGPVRFLDDVVA-TKALERLGPPRDVTASCNSSHCT 242

Query: 1048 MRWTVQST 1071
            + W   ST
Sbjct: 243  VSWAPPST 250


>ref|XP_001474061.2| PREDICTED: hypothetical protein LOC100045292 [Mus musculus].
          Length = 419

 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 43/127 (33%), Positives = 59/127 (46%)
 Frame = +1

Query: 691  AANLTCWIHDVHFLTCRWARGRAAPPDVRYRLYLENPLSHQMWECVHDEADPRGTHFQCR 870
            A NLTC I    FL+C W  G AAP DVRY L + N   H +  C+ D  D   T  QC 
Sbjct: 234  AENLTCEIRAARFLSCAWREGPAAPADVRYSLRVLNSTGHDVARCMADPGDDVIT--QCI 291

Query: 871  FDISALSDKLGRLARFLVNGSTSSGSRIPCSELTSQLSPMEILTAPHITNSWCNQSYAIM 1050
             +  +L   LG  A  +V G + +G      ++ +    +E L  P    + CN S+  +
Sbjct: 292  ANDLSL---LGSEAYLVVTGRSGAGPVRFLDDVVA-TKALERLDPPRDVTASCNSSHCTV 347

Query: 1051 RWTVQST 1071
             W   ST
Sbjct: 348  SWAPPST 354


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,793,035
Number of extensions: 1315724
Number of successful extensions: 7426
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7288
Number of HSP's successfully gapped: 4
Length of query: 361
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 258
Effective length of database: 12,523,851
Effective search space: 3231153558
Effective search space used: 3231153558
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013264
         (1085 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_002174.1| interleukin-3 receptor subunit alpha precursor ...   190   2e-48
Alignment   gi|NP_001155003.1| granulocyte-macrophage colony-stimulating fa...    89   5e-18
Alignment   gi|NP_001155002.1| granulocyte-macrophage colony-stimulating fa...    89   5e-18
Alignment   gi|NP_001155001.1| granulocyte-macrophage colony-stimulating fa...    89   5e-18
Alignment   gi|NP_758450.1| granulocyte-macrophage colony-stimulating facto...    89   5e-18
Alignment   gi|NP_758449.1| granulocyte-macrophage colony-stimulating facto...    89   5e-18
Alignment   gi|NP_758448.1| granulocyte-macrophage colony-stimulating facto...    89   5e-18
Alignment   gi|NP_006131.2| granulocyte-macrophage colony-stimulating facto...    89   5e-18
Alignment   gi|NP_758452.1| granulocyte-macrophage colony-stimulating facto...    82   7e-16
Alignment   gi|NP_001551.1| interleukin-13 receptor subunit alpha-1 precurs...    55   1e-07

>ref|NP_002174.1| interleukin-3 receptor subunit alpha precursor [Homo sapiens].
          Length = 378

 Score =  190 bits (483), Expect = 2e-48
 Identities = 107/238 (44%), Positives = 145/238 (60%), Gaps = 3/238 (1%)
 Frame = +1

Query: 364  MAFLWLAVLLMPVSCLLSVHQDPDAPIRNLRIEPESGRLSWDLHGNVSEITCYINSKREK 543
            M  LWL +LL+ + CLL   +DP+ PI NLR++ ++ +L+WDL+ NV++I C +      
Sbjct: 1    MVLLWLTLLLIALPCLLQTKEDPNPPITNLRMKAKAQQLTWDLNRNVTDIEC-VKDADYS 59

Query: 544  RKAQNNRYCAVQPIP-CSVTNYTVSVNQGPPLSTFSTWLLYPEPEGNPKAAA-NLTCWIH 717
              A NN YC    I  C VTNYTV V   P    FSTW+L+PE  G P A A NLTCWIH
Sbjct: 60   MPAVNNSYCQFGAISLCEVTNYTVRVANPP----FSTWILFPENSGKPWAGAENLTCWIH 115

Query: 718  DVHFLTCRWARGRAAPPDVRYRLYLENPLSHQMWECVHDEADPRGTHFQCRF-DISALSD 894
            DV FL+C WA G  AP DV+Y LYL      Q +EC+H + D +GT   CRF DIS LS 
Sbjct: 116  DVDFLSCSWAVGPGAPADVQYDLYLNVANRRQQYECLHYKTDAQGTRIGCRFDDISRLSS 175

Query: 895  KLGRLARFLVNGSTSSGSRIPCSELTSQLSPMEILTAPHITNSWCNQSYAIMRWTVQS 1068
               + +  LV G  S+   IPC++     S +EILT P++T + CN++++ M W ++S
Sbjct: 176  G-SQSSHILVRG-RSAAFGIPCTDKFVVFSQIEILTPPNMT-AKCNKTHSFMHWKMRS 230


>ref|NP_001155003.1| granulocyte-macrophage colony-stimulating factor receptor subunit
            alpha isoform g precursor [Homo sapiens].
          Length = 410

 Score = 89.4 bits (220), Expect = 5e-18
 Identities = 63/208 (30%), Positives = 91/208 (43%), Gaps = 5/208 (2%)
 Frame = +1

Query: 448  NLRIEPESGRLSWDLHGNVSEITCYINSKR----EKRKAQNNRYCAVQPIPCSVTNYTVS 615
            N+R +  +  LSWD   N +   C++  K+    E R + N   C  + I C     T  
Sbjct: 37   NVRFDSRTMNLSWDCQENTTFSKCFLTDKKNRVVEPRLSNNECSCTFREI-CLHEGVTFE 95

Query: 616  VNQGPPLSTFSTWLLYPEPEGNPKAAANLTCWIHDVHFLTCRWARGRAAPPDVRYRLYLE 795
            V+       F   LLYP       AA N +C+I++   + C WARG  AP DV+Y LY+ 
Sbjct: 96   VHVNTSQRGFQQKLLYPNSGREGTAAQNFSCFIYNADLMNCTWARGPTAPRDVQYFLYIR 155

Query: 796  NPLSHQMWECVHDEADPRGTHFQCRFD-ISALSDKLGRLARFLVNGSTSSGSRIPCSELT 972
            N    +   C +   D  GTH  C  D +S L+ +      FLVNG TS    I   +  
Sbjct: 156  NSKRRREIRCPYYIQD-SGTHVGCHLDNLSGLTSR----NYFLVNG-TSREIGIQFFDSL 209

Query: 973  SQLSPMEILTAPHITNSWCNQSYAIMRW 1056
                 +E    P      CN ++ ++RW
Sbjct: 210  LDTKKIERFNPPSNVTVRCNTTHCLVRW 237


>ref|NP_001155002.1| granulocyte-macrophage colony-stimulating factor receptor subunit
            alpha isoform f precursor [Homo sapiens].
          Length = 434

 Score = 89.4 bits (220), Expect = 5e-18
 Identities = 63/208 (30%), Positives = 91/208 (43%), Gaps = 5/208 (2%)
 Frame = +1

Query: 448  NLRIEPESGRLSWDLHGNVSEITCYINSKR----EKRKAQNNRYCAVQPIPCSVTNYTVS 615
            N+R +  +  LSWD   N +   C++  K+    E R + N   C  + I C     T  
Sbjct: 37   NVRFDSRTMNLSWDCQENTTFSKCFLTDKKNRVVEPRLSNNECSCTFREI-CLHEGVTFE 95

Query: 616  VNQGPPLSTFSTWLLYPEPEGNPKAAANLTCWIHDVHFLTCRWARGRAAPPDVRYRLYLE 795
            V+       F   LLYP       AA N +C+I++   + C WARG  AP DV+Y LY+ 
Sbjct: 96   VHVNTSQRGFQQKLLYPNSGREGTAAQNFSCFIYNADLMNCTWARGPTAPRDVQYFLYIR 155

Query: 796  NPLSHQMWECVHDEADPRGTHFQCRFD-ISALSDKLGRLARFLVNGSTSSGSRIPCSELT 972
            N    +   C +   D  GTH  C  D +S L+ +      FLVNG TS    I   +  
Sbjct: 156  NSKRRREIRCPYYIQD-SGTHVGCHLDNLSGLTSR----NYFLVNG-TSREIGIQFFDSL 209

Query: 973  SQLSPMEILTAPHITNSWCNQSYAIMRW 1056
                 +E    P      CN ++ ++RW
Sbjct: 210  LDTKKIERFNPPSNVTVRCNTTHCLVRW 237


>ref|NP_001155001.1| granulocyte-macrophage colony-stimulating factor receptor subunit
            alpha isoform a precursor [Homo sapiens].
          Length = 400

 Score = 89.4 bits (220), Expect = 5e-18
 Identities = 63/208 (30%), Positives = 91/208 (43%), Gaps = 5/208 (2%)
 Frame = +1

Query: 448  NLRIEPESGRLSWDLHGNVSEITCYINSKR----EKRKAQNNRYCAVQPIPCSVTNYTVS 615
            N+R +  +  LSWD   N +   C++  K+    E R + N   C  + I C     T  
Sbjct: 37   NVRFDSRTMNLSWDCQENTTFSKCFLTDKKNRVVEPRLSNNECSCTFREI-CLHEGVTFE 95

Query: 616  VNQGPPLSTFSTWLLYPEPEGNPKAAANLTCWIHDVHFLTCRWARGRAAPPDVRYRLYLE 795
            V+       F   LLYP       AA N +C+I++   + C WARG  AP DV+Y LY+ 
Sbjct: 96   VHVNTSQRGFQQKLLYPNSGREGTAAQNFSCFIYNADLMNCTWARGPTAPRDVQYFLYIR 155

Query: 796  NPLSHQMWECVHDEADPRGTHFQCRFD-ISALSDKLGRLARFLVNGSTSSGSRIPCSELT 972
            N    +   C +   D  GTH  C  D +S L+ +      FLVNG TS    I   +  
Sbjct: 156  NSKRRREIRCPYYIQD-SGTHVGCHLDNLSGLTSR----NYFLVNG-TSREIGIQFFDSL 209

Query: 973  SQLSPMEILTAPHITNSWCNQSYAIMRW 1056
                 +E    P      CN ++ ++RW
Sbjct: 210  LDTKKIERFNPPSNVTVRCNTTHCLVRW 237


>ref|NP_758450.1| granulocyte-macrophage colony-stimulating factor receptor subunit
            alpha isoform c precursor [Homo sapiens].
          Length = 333

 Score = 89.4 bits (220), Expect = 5e-18
 Identities = 63/208 (30%), Positives = 91/208 (43%), Gaps = 5/208 (2%)
 Frame = +1

Query: 448  NLRIEPESGRLSWDLHGNVSEITCYINSKR----EKRKAQNNRYCAVQPIPCSVTNYTVS 615
            N+R +  +  LSWD   N +   C++  K+    E R + N   C  + I C     T  
Sbjct: 37   NVRFDSRTMNLSWDCQENTTFSKCFLTDKKNRVVEPRLSNNECSCTFREI-CLHEGVTFE 95

Query: 616  VNQGPPLSTFSTWLLYPEPEGNPKAAANLTCWIHDVHFLTCRWARGRAAPPDVRYRLYLE 795
            V+       F   LLYP       AA N +C+I++   + C WARG  AP DV+Y LY+ 
Sbjct: 96   VHVNTSQRGFQQKLLYPNSGREGTAAQNFSCFIYNADLMNCTWARGPTAPRDVQYFLYIR 155

Query: 796  NPLSHQMWECVHDEADPRGTHFQCRFD-ISALSDKLGRLARFLVNGSTSSGSRIPCSELT 972
            N    +   C +   D  GTH  C  D +S L+ +      FLVNG TS    I   +  
Sbjct: 156  NSKRRREIRCPYYIQD-SGTHVGCHLDNLSGLTSR----NYFLVNG-TSREIGIQFFDSL 209

Query: 973  SQLSPMEILTAPHITNSWCNQSYAIMRW 1056
                 +E    P      CN ++ ++RW
Sbjct: 210  LDTKKIERFNPPSNVTVRCNTTHCLVRW 237


>ref|NP_758449.1| granulocyte-macrophage colony-stimulating factor receptor subunit
            alpha isoform b precursor [Homo sapiens].
          Length = 377

 Score = 89.4 bits (220), Expect = 5e-18
 Identities = 63/208 (30%), Positives = 91/208 (43%), Gaps = 5/208 (2%)
 Frame = +1

Query: 448  NLRIEPESGRLSWDLHGNVSEITCYINSKR----EKRKAQNNRYCAVQPIPCSVTNYTVS 615
            N+R +  +  LSWD   N +   C++  K+    E R + N   C  + I C     T  
Sbjct: 37   NVRFDSRTMNLSWDCQENTTFSKCFLTDKKNRVVEPRLSNNECSCTFREI-CLHEGVTFE 95

Query: 616  VNQGPPLSTFSTWLLYPEPEGNPKAAANLTCWIHDVHFLTCRWARGRAAPPDVRYRLYLE 795
            V+       F   LLYP       AA N +C+I++   + C WARG  AP DV+Y LY+ 
Sbjct: 96   VHVNTSQRGFQQKLLYPNSGREGTAAQNFSCFIYNADLMNCTWARGPTAPRDVQYFLYIR 155

Query: 796  NPLSHQMWECVHDEADPRGTHFQCRFD-ISALSDKLGRLARFLVNGSTSSGSRIPCSELT 972
            N    +   C +   D  GTH  C  D +S L+ +      FLVNG TS    I   +  
Sbjct: 156  NSKRRREIRCPYYIQD-SGTHVGCHLDNLSGLTSR----NYFLVNG-TSREIGIQFFDSL 209

Query: 973  SQLSPMEILTAPHITNSWCNQSYAIMRW 1056
                 +E    P      CN ++ ++RW
Sbjct: 210  LDTKKIERFNPPSNVTVRCNTTHCLVRW 237


>ref|NP_758448.1| granulocyte-macrophage colony-stimulating factor receptor subunit
            alpha isoform a precursor [Homo sapiens].
          Length = 400

 Score = 89.4 bits (220), Expect = 5e-18
 Identities = 63/208 (30%), Positives = 91/208 (43%), Gaps = 5/208 (2%)
 Frame = +1

Query: 448  NLRIEPESGRLSWDLHGNVSEITCYINSKR----EKRKAQNNRYCAVQPIPCSVTNYTVS 615
            N+R +  +  LSWD   N +   C++  K+    E R + N   C  + I C     T  
Sbjct: 37   NVRFDSRTMNLSWDCQENTTFSKCFLTDKKNRVVEPRLSNNECSCTFREI-CLHEGVTFE 95

Query: 616  VNQGPPLSTFSTWLLYPEPEGNPKAAANLTCWIHDVHFLTCRWARGRAAPPDVRYRLYLE 795
            V+       F   LLYP       AA N +C+I++   + C WARG  AP DV+Y LY+ 
Sbjct: 96   VHVNTSQRGFQQKLLYPNSGREGTAAQNFSCFIYNADLMNCTWARGPTAPRDVQYFLYIR 155

Query: 796  NPLSHQMWECVHDEADPRGTHFQCRFD-ISALSDKLGRLARFLVNGSTSSGSRIPCSELT 972
            N    +   C +   D  GTH  C  D +S L+ +      FLVNG TS    I   +  
Sbjct: 156  NSKRRREIRCPYYIQD-SGTHVGCHLDNLSGLTSR----NYFLVNG-TSREIGIQFFDSL 209

Query: 973  SQLSPMEILTAPHITNSWCNQSYAIMRW 1056
                 +E    P      CN ++ ++RW
Sbjct: 210  LDTKKIERFNPPSNVTVRCNTTHCLVRW 237


>ref|NP_006131.2| granulocyte-macrophage colony-stimulating factor receptor subunit
            alpha isoform a precursor [Homo sapiens].
          Length = 400

 Score = 89.4 bits (220), Expect = 5e-18
 Identities = 63/208 (30%), Positives = 91/208 (43%), Gaps = 5/208 (2%)
 Frame = +1

Query: 448  NLRIEPESGRLSWDLHGNVSEITCYINSKR----EKRKAQNNRYCAVQPIPCSVTNYTVS 615
            N+R +  +  LSWD   N +   C++  K+    E R + N   C  + I C     T  
Sbjct: 37   NVRFDSRTMNLSWDCQENTTFSKCFLTDKKNRVVEPRLSNNECSCTFREI-CLHEGVTFE 95

Query: 616  VNQGPPLSTFSTWLLYPEPEGNPKAAANLTCWIHDVHFLTCRWARGRAAPPDVRYRLYLE 795
            V+       F   LLYP       AA N +C+I++   + C WARG  AP DV+Y LY+ 
Sbjct: 96   VHVNTSQRGFQQKLLYPNSGREGTAAQNFSCFIYNADLMNCTWARGPTAPRDVQYFLYIR 155

Query: 796  NPLSHQMWECVHDEADPRGTHFQCRFD-ISALSDKLGRLARFLVNGSTSSGSRIPCSELT 972
            N    +   C +   D  GTH  C  D +S L+ +      FLVNG TS    I   +  
Sbjct: 156  NSKRRREIRCPYYIQD-SGTHVGCHLDNLSGLTSR----NYFLVNG-TSREIGIQFFDSL 209

Query: 973  SQLSPMEILTAPHITNSWCNQSYAIMRW 1056
                 +E    P      CN ++ ++RW
Sbjct: 210  LDTKKIERFNPPSNVTVRCNTTHCLVRW 237


>ref|NP_758452.1| granulocyte-macrophage colony-stimulating factor receptor subunit
           alpha isoform e precursor [Homo sapiens].
          Length = 233

 Score = 82.4 bits (202), Expect = 7e-16
 Identities = 54/168 (32%), Positives = 78/168 (46%), Gaps = 5/168 (2%)
 Frame = +1

Query: 448 NLRIEPESGRLSWDLHGNVSEITCYINSKR----EKRKAQNNRYCAVQPIPCSVTNYTVS 615
           N+R +  +  LSWD   N +   C++  K+    E R + N   C  + I C     T  
Sbjct: 37  NVRFDSRTMNLSWDCQENTTFSKCFLTDKKNRVVEPRLSNNECSCTFREI-CLHEGVTFE 95

Query: 616 VNQGPPLSTFSTWLLYPEPEGNPKAAANLTCWIHDVHFLTCRWARGRAAPPDVRYRLYLE 795
           V+       F   LLYP       AA N +C+I++   + C WARG  AP DV+Y LY+ 
Sbjct: 96  VHVNTSQRGFQQKLLYPNSGREGTAAQNFSCFIYNADLMNCTWARGPTAPRDVQYFLYIR 155

Query: 796 NPLSHQMWECVHDEADPRGTHFQCRFD-ISALSDKLGRLARFLVNGST 936
           N    +   C +   D  GTH  C  D +S L+ +      FLVNG++
Sbjct: 156 NSKRRREIRCPYYIQD-SGTHVGCHLDNLSGLTSR----NYFLVNGTS 198


>ref|NP_001551.1| interleukin-13 receptor subunit alpha-1 precursor [Homo sapiens].
          Length = 427

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 45/186 (24%), Positives = 76/186 (40%), Gaps = 7/186 (3%)
 Frame = +1

Query: 520  YINSKREKRKAQNNRYCAVQPIP---CSVTNYTVSVNQGPPLSTFSTWLLYPEPEGNPKA 690
            +   K++K+ A   R     P+    C       S N+    S      + P PEG+P++
Sbjct: 69   HFGDKQDKKIAPETRRSIEVPLNERICLQVGSQCSTNESEKPSILVEKCISP-PEGDPES 127

Query: 691  AAN-LTCWIHDVHFLTCRWARGRAAPPDVRYRLYLENPLSHQMWECVHDEADPRGTHFQC 867
            A   L C  H++ ++ C W  GR   PD  Y LY  +    ++ +C  +     G +F C
Sbjct: 128  AVTELQCIWHNLSYMKCSWLPGRNTSPDTNYTLYYWHRSLEKIHQC--ENIFREGQYFGC 185

Query: 868  RFDISALSDKLGRLARFLVNGSTSSGSRIPCSE---LTSQLSPMEILTAPHITNSWCNQS 1038
             FD++ + D         +    ++G   P      LTS++ P      PHI N   +  
Sbjct: 186  SFDLTKVKDSSFEQHSVQIMVKDNAGKIKPSFNIVPLTSRVKP----DPPHIKNLSFHND 241

Query: 1039 YAIMRW 1056
               ++W
Sbjct: 242  DLYVQW 247


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,781,723
Number of extensions: 1609563
Number of successful extensions: 9780
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 9580
Number of HSP's successfully gapped: 11
Length of query: 361
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 257
Effective length of database: 14,868,908
Effective search space: 3821309356
Effective search space used: 3821309356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013264
         (1085 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL896402.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...   246   2e-62
gb|GL896045.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...   198   4e-48
gb|GL892657.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...   168   4e-39
gb|GL896347.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...   165   6e-38

>gb|GL896402.1| Sus scrofa unplaced genomic scaffold chrU_scaffold746
          Length = 9599

 Score =  246 bits (124), Expect = 2e-62
 Identities = 124/124 (100%)
 Strand = Plus / Plus

                                                                        
Query: 427  gatccagacgcaccgattaggaacttaaggatagagccggaaagtggacggctgagctgg 486
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8651 gatccagacgcaccgattaggaacttaaggatagagccggaaagtggacggctgagctgg 8710

                                                                        
Query: 487  gacctccacggaaatgtctccgaaattacgtgttacatcaattcgaaacgtgaaaagcga 546
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8711 gacctccacggaaatgtctccgaaattacgtgttacatcaattcgaaacgtgaaaagcga 8770

                
Query: 547  aagg 550
            ||||
Sbjct: 8771 aagg 8774



 Score = 93.7 bits (47), Expect = 2e-16
 Identities = 47/47 (100%)
 Strand = Plus / Plus

                                                           
Query: 759  ggcgcccccggacgtgcgctaccgtctctacctggagaatccactgt 805
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9372 ggcgcccccggacgtgcgctaccgtctctacctggagaatccactgt 9418


>gb|GL896045.1| Sus scrofa unplaced genomic scaffold chrU_scaffold455
          Length = 1132

 Score =  198 bits (100), Expect = 4e-48
 Identities = 103/104 (99%)
 Strand = Plus / Minus

                                                                       
Query: 570 cgccgttcagcccatcccatgctcagtgaccaactacacggtctccgtgaaccaagggcc 629
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 cgccgttcagcccatcccatgctcagtgaccaactacacggtctccgtgaaccaagggcc 69

                                                       
Query: 630 gccgttgtccacgttctccacgtggctcctgtatcctgagccag 673
           ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 68  gccgttgtccacgttctccacgtggatcctgtatcctgagccag 25


>gb|GL892657.1| Sus scrofa unplaced genomic scaffold chrU_scaffold150
          Length = 188

 Score =  168 bits (85), Expect = 4e-39
 Identities = 88/89 (98%)
 Strand = Plus / Minus

                                                                       
Query: 151 ctctttctctttccagaggctgcctgcatttcagccgtgaaaataagaccgtgaggagcc 210
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 89  ctctttctctttccagaggctgcctgcatttcagccgtgaaaataagaccctgaggagcc 30

                                        
Query: 211 aaggatacccctgcccctggcccctcgtg 239
           |||||||||||||||||||||||||||||
Sbjct: 29  aaggatacccctgcccctggcccctcgtg 1


>gb|GL896347.1| Sus scrofa unplaced genomic scaffold chrU_scaffold697
          Length = 12539

 Score =  165 bits (83), Expect = 6e-38
 Identities = 93/95 (97%), Gaps = 1/95 (1%)
 Strand = Plus / Minus

                                                                         
Query: 992   agatactcaccgccccccacatcacaaacagttggtgtaaccaaagctatgctatcatgc 1051
             ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10692 agatactcaccgcccccaacatcacaaacagttggtgtaaccaaagctatgctatcatgc 10633

                                                
Query: 1052  ggtggacagtgcaaagt-actttaactttcatttc 1085
             ||||||||||||||||| |||||||||||||||||
Sbjct: 10632 ggtggacagtgcaaagtaactttaactttcatttc 10598



 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 45/46 (97%)
 Strand = Plus / Minus

                                                           
Query: 946   tccagaatcccctgctccgaacttacgagccaactgtccccgatgg 991
             ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 12539 tccagaatcccctgctctgaacttacgagccaactgtccccgatgg 12494


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,313,100
Number of extensions: 159
Number of successful extensions: 159
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 6
Length of query: 1085
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1064
Effective length of database: 2,808,413,156
Effective search space: 2988151597984
Effective search space used: 2988151597984
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)