Animal-Genome cDNA 20110601C-013275


Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013275
         (995 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_533549.2| PREDICTED: similar to Methylglutaconyl-CoA hydr...   278   6e-75
Alignment   gi|XP_853370.1| PREDICTED: similar to enoyl Coenzyme A hydratas...   242   5e-64
Alignment   gi|XP_537945.2| PREDICTED: similar to Enoyl-CoA hydratase, mito...   114   1e-25
Alignment   gi|XP_533678.1| PREDICTED: similar to peroxisomal enoyl-coenzym...    85   9e-17
Alignment   gi|XP_859489.1| PREDICTED: similar to hydroxyacyl dehydrogenase...    82   8e-16
Alignment   gi|XP_532894.1| PREDICTED: similar to hydroxyacyl dehydrogenase...    82   8e-16
Alignment   gi|XP_545234.1| PREDICTED: similar to enoyl-Coenzyme A, hydrata...    79   7e-15
Alignment   gi|XP_544259.2| PREDICTED: similar to enoyl Coenzyme A hydratas...    74   3e-13
Alignment   gi|XP_851564.1| PREDICTED: similar to enoyl Coenzyme A hydratas...    70   2e-12
Alignment   gi|XP_867316.1| PREDICTED: similar to peroxisomal enoyl-coenzym...    70   3e-12

>ref|XP_533549.2| PREDICTED: similar to Methylglutaconyl-CoA hydratase, mitochondrial
           precursor (AU-specific RNA-binding enoyl-CoA hydratase)
           (AU-binding protein/enoyl-CoA hydratase) [Canis
           familiaris].
          Length = 340

 Score =  278 bits (711), Expect = 6e-75
 Identities = 140/264 (53%), Positives = 191/264 (72%)
 Frame = +1

Query: 202 SSPVDAGREIQVRALEGLDQGITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVL 381
           SS V    E++VR LE  ++GI  + +NR  A+N      V  L +A+  L+ D+ VR +
Sbjct: 69  SSEVKTEDELRVRYLEEENRGIVVLGINRAYAKNTFSKSLVKMLSKAVDALKSDKKVRTI 128

Query: 382 IFRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLRGLMNEIAAFPAPTIAAMDXXXXXXX 561
           I RS V G+FCAGADLKER +M+ +EVG FV ++R +++EIA  P PTIAA+D       
Sbjct: 129 IVRSEVPGIFCAGADLKERVKMNPSEVGPFVSKIRAVIDEIANLPVPTIAAIDGLALGGG 188

Query: 562 XXXXXXCDLRVAASSAVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQ 741
                 CD+RVAASSA MGL+ET   ++PG GGTQRLPR +G++LAKELIF+ R L G +
Sbjct: 189 LELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGQE 248

Query: 742 AQALGLVNHAVAQNEEGNAAYHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAI 921
           A+A+GL++H + QN+EG+AAY +AL LA+E LPQ P+AVR+ KLAI++G+EVD+ +G+AI
Sbjct: 249 AKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAVRVAKLAINQGMEVDLVTGLAI 308

Query: 922 EGICYAQNIPTRDRLEGMAAFREK 993
           E  CYAQ IPT+DRLEG+ AF+EK
Sbjct: 309 EEACYAQTIPTKDRLEGLLAFKEK 332


>ref|XP_853370.1| PREDICTED: similar to enoyl Coenzyme A hydratase domain containing
           2 [Canis familiaris].
          Length = 147

 Score =  242 bits (617), Expect = 5e-64
 Identities = 126/147 (85%), Positives = 131/147 (89%)
 Frame = +1

Query: 280 MNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMSEAE 459
           MNRPSA NALGNV V+QLLEALAQLRED+ VRVL+FRSGVKGVFCAGADLKEREQMSEAE
Sbjct: 1   MNRPSACNALGNVLVNQLLEALAQLREDQQVRVLLFRSGVKGVFCAGADLKEREQMSEAE 60

Query: 460 VGVFVQRLRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRG 639
           VG+FVQRLRGLMNEIAAFPAPTIAAMD             CDLRVAASSAVMGLIETTRG
Sbjct: 61  VGIFVQRLRGLMNEIAAFPAPTIAAMDGFALGGGLELALACDLRVAASSAVMGLIETTRG 120

Query: 640 LLPGAGGTQRLPRCLGVALAKELIFTG 720
           LLPGAGGTQRLPRC+GVALAKELIFTG
Sbjct: 121 LLPGAGGTQRLPRCIGVALAKELIFTG 147


>ref|XP_537945.2| PREDICTED: similar to Enoyl-CoA hydratase, mitochondrial precursor
            (Short chain enoyl-CoA hydratase) (SCEH) (Enoyl-CoA
            hydratase 1) [Canis familiaris].
          Length = 575

 Score =  114 bits (286), Expect = 1e-25
 Identities = 75/249 (30%), Positives = 117/249 (46%)
 Frame = +1

Query: 247  EGLDQGITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGAD 426
            +G +  +  I +NRP A NAL N  + +L +AL    +D  V  ++   G K  F AGAD
Sbjct: 326  KGKNSNVGLIQLNRPKALNALCNGLMMELNQALEAFEKDPAVGAIVLTGGEKA-FAAGAD 384

Query: 427  LKEREQMSEAEVGVFVQRLRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASS 606
            +KE +  +  +   +  +     +++A    P IAA++             CD+  A   
Sbjct: 385  IKEMQNQTFQDC--YSSKFLSHWDQLAQVKKPVIAAVNGYALGGGCELAMMCDIIYAGEK 442

Query: 607  AVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNE 786
            A     E   G +PGAGGTQRL R +G +LA E++ TG R+S   A+  GLV+       
Sbjct: 443  AQFAQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPV-- 500

Query: 787  EGNAAYHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRL 966
                    A+  A++I   + I   + K +++   E+ +  G  +E   +     T DR 
Sbjct: 501  --ETLVEEAIRCAEKIASNSKIVTAMAKESVNAAFEMTLTEGNRLEKKLFYATFATEDRK 558

Query: 967  EGMAAFREK 993
            EGM AF EK
Sbjct: 559  EGMTAFVEK 567


>ref|XP_533678.1| PREDICTED: similar to peroxisomal enoyl-coenzyme A hydratase-like
           protein isoform 1 [Canis familiaris].
          Length = 328

 Score = 85.1 bits (209), Expect = 9e-17
 Identities = 77/290 (26%), Positives = 119/290 (41%), Gaps = 16/290 (5%)
 Frame = +1

Query: 172 RPLEKT---RGCASSPVDA-GREIQVRALEGLDQGITEILMNRPSARNALGNVFVSQLLE 339
           RPL          ++P +A G   +   +    + I  + +NRP  RNA+   F  +++E
Sbjct: 32  RPLSSAAQDEASTAAPREAPGHSYESLRVTAAQKHILHVQLNRPEKRNAMNKAFWREMVE 91

Query: 340 ALAQLREDRHVRVLIFRSGVKGVFCAGADLKERE----QMSEAEVGVFVQRLRGLMNE-- 501
              ++ +D   R ++  SG   VF AG DL +      Q    +V      LR L+    
Sbjct: 92  CFNKIAQDPDCRAVVI-SGAGKVFTAGIDLMDMASEILQPQGDDVARISWNLRNLITRYQ 150

Query: 502 -----IAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLLPGAGGTQ 666
                I   P P IAA+              CD+R  A  A   + E   GL    G  Q
Sbjct: 151 ETFSVIEKCPKPVIAAIHGACIGAGVDLITACDIRYCAQDAFFQVKEVDIGLAADVGTLQ 210

Query: 667 RLPRCLG-VALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQEILPQ 843
           RLP+ +G  +L  EL FT R +   +A A GLV+      E        A  LA EI  +
Sbjct: 211 RLPKIIGNQSLVNELAFTCRTMMADEALASGLVSRVFPDKE---GMLDAAFTLAAEISTK 267

Query: 844 APIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK 993
           +P+AV+  K+ +       +  G+          + T+D ++ + A  EK
Sbjct: 268 SPVAVQSTKINLIYSRNHPVTEGLNYMATWNMSMLQTQDIIKSVQAAMEK 317


>ref|XP_859489.1| PREDICTED: similar to hydroxyacyl dehydrogenase, subunit A isoform
           3 [Canis familiaris].
          Length = 761

 Score = 82.0 bits (201), Expect = 8e-16
 Identities = 62/239 (25%), Positives = 106/239 (44%), Gaps = 5/239 (2%)
 Frame = +1

Query: 250 GLDQGITEILMNRPSAR-NALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGAD 426
           G+   +  + +N P+++ N L     S+ +E + ++     +R  +  S   G F AGAD
Sbjct: 44  GVKGDVAVVRLNSPNSKVNTLNKELQSEFMEVMNEIWASDQIRSAVLISTKPGCFIAGAD 103

Query: 427 LKEREQM-SEAEVGVFVQRLRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAAS 603
           +       +  EV    Q  + +  ++     P +AA+              C  R+A  
Sbjct: 104 INMLASCKTHEEVTRISQEGQRMFEKLEKSTKPIVAAISGACLGGGLELAISCQYRIATK 163

Query: 604 S--AVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVA 777
               V+G  E   G+LPGAGGTQRLP+ +G+  A +++ TGR +   +A+ +GLV+  V 
Sbjct: 164 DRKTVLGAPEVLLGILPGAGGTQRLPKMVGLPAAFDMMLTGRNIRADRAKRMGLVDQLVE 223

Query: 778 QNEEG-NAAYHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIP 951
               G      R +   +E      +AV   K   D+ I +    G+  +   YA +IP
Sbjct: 224 PLGPGLKPPEERTIEYLEE------VAVNFAKGLSDKKISIKRDKGLVEKLTSYALSIP 276


>ref|XP_532894.1| PREDICTED: similar to hydroxyacyl dehydrogenase, subunit A isoform
           2 [Canis familiaris].
          Length = 762

 Score = 82.0 bits (201), Expect = 8e-16
 Identities = 62/239 (25%), Positives = 106/239 (44%), Gaps = 5/239 (2%)
 Frame = +1

Query: 250 GLDQGITEILMNRPSAR-NALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGAD 426
           G+   +  + +N P+++ N L     S+ +E + ++     +R  +  S   G F AGAD
Sbjct: 44  GVKGDVAVVRLNSPNSKVNTLNKELQSEFMEVMNEIWASDQIRSAVLISTKPGCFIAGAD 103

Query: 427 LKEREQM-SEAEVGVFVQRLRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAAS 603
           +       +  EV    Q  + +  ++     P +AA+              C  R+A  
Sbjct: 104 INMLASCKTHEEVTRISQEGQRMFEKLEKSTKPIVAAISGACLGGGLELAISCQYRIATK 163

Query: 604 S--AVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVA 777
               V+G  E   G+LPGAGGTQRLP+ +G+  A +++ TGR +   +A+ +GLV+  V 
Sbjct: 164 DRKTVLGAPEVLLGILPGAGGTQRLPKMVGLPAAFDMMLTGRNIRADRAKRMGLVDQLVE 223

Query: 778 QNEEG-NAAYHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIP 951
               G      R +   +E      +AV   K   D+ I +    G+  +   YA +IP
Sbjct: 224 PLGPGLKPPEERTIEYLEE------VAVNFAKGLSDKKISIKRDKGLVEKLTSYALSIP 276


>ref|XP_545234.1| PREDICTED: similar to enoyl-Coenzyme A, hydratase/3-hydroxyacyl
           Coenzyme A dehydrogenase [Canis familiaris].
          Length = 723

 Score = 79.0 bits (193), Expect = 7e-15
 Identities = 59/188 (31%), Positives = 89/188 (47%)
 Frame = +1

Query: 301 NALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMSEAEVGVFVQR 480
           NA+    +  + + L +   DR V+ ++   G  G F AGAD+       E     FV  
Sbjct: 22  NAISTAVLRGIKDGLQKATTDRTVKAIVL-CGADGKFSAGADI---HSFGEPRKSDFV-- 75

Query: 481 LRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLLPGAGG 660
           L  +++EI     P +AA+              C  R+A + A +G  E T G+LPGA G
Sbjct: 76  LGHIVDEIQRTEKPVVAAIQGLALGGGLELALGCHYRIAHAEAQIGFPEVTLGILPGARG 135

Query: 661 TQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQEILP 840
           TQ LPR +GV  A +LI +GR +   +A  LG+++  V      +     A+ LAQ I  
Sbjct: 136 TQLLPRLIGVPAALDLITSGRHVLADEALKLGILDEIV-----NSDPVEEAIKLAQRISD 190

Query: 841 QAPIAVRL 864
           Q+  + RL
Sbjct: 191 QSLESRRL 198


>ref|XP_544259.2| PREDICTED: similar to enoyl Coenzyme A hydratase domain containing
           3 [Canis familiaris].
          Length = 261

 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 67/246 (27%), Positives = 105/246 (42%), Gaps = 2/246 (0%)
 Frame = +1

Query: 262 GITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKER- 438
           GI  I+++ P  RNAL    +  L   L    E + +RV+I  S    VF +G DLKE  
Sbjct: 16  GIRNIVLSDPKKRNALSLAMLKSLQTDLLHESESKDLRVIII-SAEGPVFSSGHDLKELT 74

Query: 439 -EQMSEAEVGVFVQRLRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVM 615
            E+  +    VF Q    +M  I   P P IA ++             CD+ VA+  +  
Sbjct: 75  DERSPDYHAEVF-QTCSEVMMLIQNHPVPIIAMVNGLATAAGCQLVASCDIAVASDKSSF 133

Query: 616 GLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGN 795
                  GL     G   L R +   +A E++FTG  +S  +A   GL++  V   +   
Sbjct: 134 ATPGVNIGLFCSTPGVA-LGRAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPAEQ--- 189

Query: 796 AAYHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGM 975
                 + +A++I   +   V LGK A  R +  D+ +   +       N+  +D  EG+
Sbjct: 190 -LEEETMRIARKIASLSRRVVSLGKAAFYRQLPQDLRTAYHLTSQTMVDNVALQDGQEGI 248

Query: 976 AAFREK 993
            AF +K
Sbjct: 249 KAFIQK 254


>ref|XP_851564.1| PREDICTED: similar to enoyl Coenzyme A hydratase domain containing
           1 isoform 1 [Canis familiaris].
          Length = 307

 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 53/228 (23%), Positives = 97/228 (42%), Gaps = 1/228 (0%)
 Frame = +1

Query: 244 LEGLDQGITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGA 423
           L+  D GI  + +N PS  NA   V + QLLE + +L      + LI R G K  F +G+
Sbjct: 57  LQKEDSGIGILTLNNPSKMNAFSGVMMLQLLEKVIELENWTEGKGLIVR-GAKNTFSSGS 115

Query: 424 DLKEREQMSEAEVGV-FVQRLRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAA 600
           DL   + ++  E G+     ++  +  +   P  ++A +              CD R+  
Sbjct: 116 DLNAVKALATPEDGMALCMFMQNTLTRLMRLPLISVALIQGRALGGGAEVTTACDFRLMT 175

Query: 601 SSAVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQ 780
           +   +  +    G++P  GG  RL   LG   A +++     L   +A +LG+V   +  
Sbjct: 176 ADGEIRFVHREMGIVPSWGGGTRLVELLGARQALKVLSGALPLDAARALSLGMVEEVLRA 235

Query: 781 NEEGNAAYHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIE 924
           ++E  +    A A   +     P  +R  K ++    E+ +   + +E
Sbjct: 236 SDEA-SCLQEARAWLGQFTQGPPQVIRALKRSVSSSRELCLEEALQME 282


>ref|XP_867316.1| PREDICTED: similar to peroxisomal enoyl-coenzyme A hydratase-like
           protein isoform 2 [Canis familiaris].
          Length = 248

 Score = 70.1 bits (170), Expect = 3e-12
 Identities = 64/241 (26%), Positives = 98/241 (40%), Gaps = 12/241 (4%)
 Frame = +1

Query: 307 LGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKERE----QMSEAEVGVFV 474
           +   F  +++E   ++ +D   R ++  SG   VF AG DL +      Q    +V    
Sbjct: 1   MNKAFWREMVECFNKIAQDPDCRAVVI-SGAGKVFTAGIDLMDMASEILQPQGDDVARIS 59

Query: 475 QRLRGLMNE-------IAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETT 633
             LR L+         I   P P IAA+              CD+R  A  A   + E  
Sbjct: 60  WNLRNLITRYQETFSVIEKCPKPVIAAIHGACIGAGVDLITACDIRYCAQDAFFQVKEVD 119

Query: 634 RGLLPGAGGTQRLPRCLG-VALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHR 810
            GL    G  QRLP+ +G  +L  EL FT R +   +A A GLV+      E        
Sbjct: 120 IGLAADVGTLQRLPKIIGNQSLVNELAFTCRTMMADEALASGLVSRVFPDKE---GMLDA 176

Query: 811 ALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFRE 990
           A  LA EI  ++P+AV+  K+ +       +  G+          + T+D ++ + A  E
Sbjct: 177 AFTLAAEISTKSPVAVQSTKINLIYSRNHPVTEGLNYMATWNMSMLQTQDIIKSVQAAME 236

Query: 991 K 993
           K
Sbjct: 237 K 237


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,122,297
Number of extensions: 1464764
Number of successful extensions: 9030
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 8786
Number of HSP's successfully gapped: 17
Length of query: 331
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 228
Effective length of database: 15,440,896
Effective search space: 3520524288
Effective search space used: 3520524288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013275
         (995 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001033625.1| enoyl-CoA hydratase domain-containing protei...   474   e-134
Alignment   gi|XP_002694023.1| PREDICTED: AU RNA binding protein/enoyl-Coen...   189   3e-48
Alignment   gi|NP_001020377.2| enoyl-CoA hydratase, mitochondrial precursor...   130   2e-30
Alignment   gi|NP_001069248.2| peroxisomal bifunctional enzyme [Bos taurus].      89   5e-18
Alignment   gi|NP_776760.1| trifunctional enzyme subunit alpha, mitochondri...    78   1e-14
Alignment   gi|XP_002695024.1| PREDICTED: enoyl Coenzyme A hydratase 1, per...    75   7e-14
Alignment   gi|XP_002701918.1| PREDICTED: enoyl Coenzyme A hydratase 1, per...    75   7e-14
Alignment   gi|NP_001180085.1| enoyl-CoA hydratase domain-containing protei...    72   6e-13
Alignment   gi|XP_002692097.1| PREDICTED: enoyl Coenzyme A hydratase domain...    72   6e-13
Alignment   gi|NP_001030492.1| enoyl-CoA hydratase domain-containing protei...    66   5e-11

>ref|NP_001033625.1| enoyl-CoA hydratase domain-containing protein 2, mitochondrial
           precursor [Bos taurus].
          Length = 296

 Score =  474 bits (1220), Expect = e-134
 Identities = 253/289 (87%), Positives = 259/289 (89%)
 Frame = +1

Query: 127 MLRTLASALRPPRRWRPLEKTRGCASSPVDAGREIQVRALEGLDQGITEILMNRPSARNA 306
           MLR L S LR PR W+PLE TRGC+S+P  AGREIQV AL G +QGI EILMNRPSARNA
Sbjct: 1   MLRVLTSTLRFPRPWKPLE-TRGCSSNPGAAGREIQVCALAGPNQGIAEILMNRPSARNA 59

Query: 307 LGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLR 486
           LGNVFVSQLLEALAQLREDR VRVLIFRSGVKGVFCAGADLKEREQMSEAEVG+FVQRLR
Sbjct: 60  LGNVFVSQLLEALAQLREDRQVRVLIFRSGVKGVFCAGADLKEREQMSEAEVGLFVQRLR 119

Query: 487 GLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLLPGAGGTQ 666
           GLM EIAAFPAPTIAAMD             CDLRVAASSAVMGLIETTRGLLPGAGGTQ
Sbjct: 120 GLMTEIAAFPAPTIAAMDGFALGGGLELALACDLRVAASSAVMGLIETTRGLLPGAGGTQ 179

Query: 667 RLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQEILPQA 846
           RLPRCLGVALAKELIFTGRRLSG QAQALGLVNHAVAQNEEGNAAYHRA ALAQEILPQA
Sbjct: 180 RLPRCLGVALAKELIFTGRRLSGAQAQALGLVNHAVAQNEEGNAAYHRARALAQEILPQA 239

Query: 847 PIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK 993
           PIAVRL K+AIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK
Sbjct: 240 PIAVRLSKVAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK 288


>ref|XP_002694023.1| PREDICTED: AU RNA binding protein/enoyl-Coenzyme A hydratase-like
           [Bos taurus].
          Length = 288

 Score =  189 bits (480), Expect = 3e-48
 Identities = 106/264 (40%), Positives = 153/264 (57%)
 Frame = +1

Query: 202 SSPVDAGREIQVRALEGLDQGITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVL 381
           S+ V    E++V  LE  ++GI  + +NR  A+N+L    +  L  A+  L+ D+ VR +
Sbjct: 67  SAEVKTEDELRVWYLEEENRGIVVLGINRAYAKNSLSKNLIKMLSRAVDALKSDKKVRTI 126

Query: 382 IFRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLRGLMNEIAAFPAPTIAAMDXXXXXXX 561
           I R+ V G+FCAGADLKER +MS                                     
Sbjct: 127 IVRNEVPGIFCAGADLKERAKMS------------------------------------- 149

Query: 562 XXXXXXCDLRVAASSAVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQ 741
                        SS V   +   R ++   GGTQRLPR +G++L KELIF+ R L G +
Sbjct: 150 -------------SSEVGPFVSKIRAMINEIGGTQRLPRAIGMSLGKELIFSARVLDGQE 196

Query: 742 AQALGLVNHAVAQNEEGNAAYHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAI 921
           A+++GL++H + QN+EG+AAY +AL LA+E LPQ P+A+ + KLAI++G+EVD+ +G+AI
Sbjct: 197 AKSVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMTVAKLAINQGMEVDLVTGLAI 256

Query: 922 EGICYAQNIPTRDRLEGMAAFREK 993
           E  CYAQ IPT+DRLEG+ AF+EK
Sbjct: 257 EEACYAQTIPTKDRLEGLLAFKEK 280


>ref|NP_001020377.2| enoyl-CoA hydratase, mitochondrial precursor [Bos taurus].
          Length = 290

 Score =  130 bits (327), Expect = 2e-30
 Identities = 95/291 (32%), Positives = 138/291 (47%), Gaps = 3/291 (1%)
 Frame = +1

Query: 130 LRTLASALRPPRR-WRPLEKTRGCASSPVDAGREIQVRALEGLDQGITEILMNRPSARNA 306
           LR L   +R P R W      R  ASS   A  E  + A +G +  +  I +NRP A NA
Sbjct: 4   LRALLPRVRAPLRPWLFCPVQRSFASS---AAFEYIITAKKGRNSNVGLIQLNRPKALNA 60

Query: 307 LGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMS--EAEVGVFVQR 480
           L N  + +L +AL    ED  V  ++   G K VF AGAD+KE + ++      G F+  
Sbjct: 61  LCNGLIVELNQALQAFEEDPAVGAIVLTGGEK-VFAAGADIKEMQSLTFQNCYSGGFLSH 119

Query: 481 LRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLLPGAGG 660
                +++     P IAA++             CD+  A   A  G  E   G +PGAGG
Sbjct: 120 ----WDQLTRVKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILIGTIPGAGG 175

Query: 661 TQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQEILP 840
           TQRL R +G +LA E++ TG R+S   A+  GLV+               A+  A++I  
Sbjct: 176 TQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPV----ETVVEEAIQCAEKIAS 231

Query: 841 QAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK 993
            + I   + K +++   E+ +A G+ +E   +     T DR EGMAAF EK
Sbjct: 232 NSKIVTAMAKESVNAAFEMTLAEGVKLEKKLFYSTFATEDRKEGMAAFVEK 282


>ref|NP_001069248.2| peroxisomal bifunctional enzyme [Bos taurus].
          Length = 723

 Score = 89.4 bits (220), Expect = 5e-18
 Identities = 57/193 (29%), Positives = 96/193 (49%)
 Frame = +1

Query: 301 NALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMSEAEVGVFVQR 480
           NA+       + E+L +   D  V+ ++   G  G+FCAGAD++E +     ++     +
Sbjct: 22  NAISTTVARGIKESLQKAITDDTVKAIVI-CGADGIFCAGADIREFKVHKTFDI-----Q 75

Query: 481 LRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLLPGAGG 660
           L  +++EI     P +AA+              C  R+A + A +G  E T G+LPGA G
Sbjct: 76  LGDIVDEIQRNKKPVVAAIQKLALGGGLELALGCHYRIAHAEAQVGFPEVTLGILPGARG 135

Query: 661 TQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQEILP 840
           TQ LPR +GV  A +LI +GR +S  +A  LG+++  V      +     ++  AQ I  
Sbjct: 136 TQLLPRLVGVPAALDLIISGRHISANEALKLGIIDKIV-----NSDPIEESIKFAQRISD 190

Query: 841 QAPIAVRLGKLAI 879
           Q+P + R+  + +
Sbjct: 191 QSPESRRICNMPV 203


>ref|NP_776760.1| trifunctional enzyme subunit alpha, mitochondrial [Bos taurus].
          Length = 773

 Score = 77.8 bits (190), Expect = 1e-14
 Identities = 62/239 (25%), Positives = 105/239 (43%), Gaps = 5/239 (2%)
 Frame = +1

Query: 250 GLDQGITEILMNRPSAR-NALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGAD 426
           G+   +  I +N P+++ N L     S+ +E + ++     +R  +  S   G F AGAD
Sbjct: 54  GVRGDVAVIRINSPNSKVNTLSQELHSEFMEVMNEVWSSSQIRSAVLISTKPGCFIAGAD 113

Query: 427 LKEREQMSEA-EVGVFVQRLRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAAS 603
           L      + + EV    Q  + +  ++     P +AA++             C  R+A  
Sbjct: 114 LNMLNSCTTSQEVTQISQEAQKMFEKLEKSTKPVVAAINGSCLGGGLELAISCQYRIATK 173

Query: 604 S--AVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVA 777
               V+G  E   G+LPGAG TQRLP+ +G   A +++ TGR +   +A+ +GLV+  V 
Sbjct: 174 DKKTVLGSPEVLLGILPGAGATQRLPKMVGRPAAFDMMLTGRGIRADRAKKMGLVDQLVE 233

Query: 778 QNEEG-NAAYHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIP 951
               G      R +   +E      +A+   K   D+ I      G+  +   YA +IP
Sbjct: 234 PLGPGVKPPEERTIEYLEE------VAITFAKGLADKKITPKRDKGLVEKLTSYALSIP 286


>ref|XP_002695024.1| PREDICTED: enoyl Coenzyme A hydratase 1, peroxisomal isoform 1 [Bos
           taurus].
          Length = 326

 Score = 75.5 bits (184), Expect = 7e-14
 Identities = 69/294 (23%), Positives = 122/294 (41%), Gaps = 13/294 (4%)
 Frame = +1

Query: 151 LRPPRRWRPLEKTRGCASSPVDA-GREIQVRALEGLDQGITEILMNRPSARNALGNVFVS 327
           LRP   +   E ++   +SP +A G   +   +    + +  + +NRP  RNA+   F  
Sbjct: 29  LRPMSAFTQEEASK---ASPEEAPGHSYESLRVTAAQKHVLHVQLNRPEKRNAMNKAFWR 85

Query: 328 QLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMSEAEVG-----------VFV 474
           +++    ++ ED   RV++  SG   +F +G DL +         G             +
Sbjct: 86  EMVVCFNKIAEDSDCRVVVI-SGAGKMFSSGIDLMDMASDLLQPAGDDSARISWHLHSLL 144

Query: 475 QRLRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLLPGA 654
            R +   + I   P P IAA+              CD+R +   +   + E   GL    
Sbjct: 145 TRYQETFSVIEKCPKPVIAAIHGGCIGGGVDLITACDIRYSTRDSFFQVKEVDVGLAADV 204

Query: 655 GGTQRLPRCLG-VALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQE 831
           G  QRLP+ +G  +L  EL +T R++   +A   GLV+      E   +    A  LA E
Sbjct: 205 GTLQRLPKVIGNQSLVNELAYTARKMMADEALESGLVSRLFPDKE---SMLDAAFTLAAE 261

Query: 832 ILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK 993
           I  ++P+AV+  K+ +    +  +   +          + T+D ++ + A  EK
Sbjct: 262 ISSKSPVAVQSTKINLIYSRDHSVMESLNYMKSWNMSMLQTKDIMKSVQAAIEK 315


>ref|XP_002701918.1| PREDICTED: enoyl Coenzyme A hydratase 1, peroxisomal isoform 1 [Bos
           taurus].
          Length = 326

 Score = 75.5 bits (184), Expect = 7e-14
 Identities = 69/294 (23%), Positives = 122/294 (41%), Gaps = 13/294 (4%)
 Frame = +1

Query: 151 LRPPRRWRPLEKTRGCASSPVDA-GREIQVRALEGLDQGITEILMNRPSARNALGNVFVS 327
           LRP   +   E ++   +SP +A G   +   +    + +  + +NRP  RNA+   F  
Sbjct: 29  LRPMSAFTQEEASK---ASPEEAPGHSYESLRVTAAQKHVLHVQLNRPEKRNAMNKAFWR 85

Query: 328 QLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMSEAEVG-----------VFV 474
           +++    ++ ED   RV++  SG   +F +G DL +         G             +
Sbjct: 86  EMVVCFNKIAEDSDCRVVVI-SGAGKMFSSGIDLMDMASDLLQPAGDDSARISWHLHSLL 144

Query: 475 QRLRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLLPGA 654
            R +   + I   P P IAA+              CD+R +   +   + E   GL    
Sbjct: 145 TRYQETFSVIEKCPKPVIAAIHGGCIGGGVDLITACDIRYSTRDSFFQVKEVDVGLAADV 204

Query: 655 GGTQRLPRCLG-VALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQE 831
           G  QRLP+ +G  +L  EL +T R++   +A   GLV+      E   +    A  LA E
Sbjct: 205 GTLQRLPKVIGNQSLVNELAYTARKMMADEALESGLVSRLFPDKE---SMLDAAFTLAAE 261

Query: 832 ILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK 993
           I  ++P+AV+  K+ +    +  +   +          + T+D ++ + A  EK
Sbjct: 262 ISSKSPVAVQSTKINLIYSRDHSVMESLNYMKSWNMSMLQTKDIMKSVQAAIEK 315


>ref|NP_001180085.1| enoyl-CoA hydratase domain-containing protein 3, mitochondrial [Bos
           taurus].
          Length = 300

 Score = 72.4 bits (176), Expect = 6e-13
 Identities = 73/279 (26%), Positives = 116/279 (41%), Gaps = 4/279 (1%)
 Frame = +1

Query: 169 WRPLEKTRGCASSPVDAGR-EIQVRALEGLDQ-GITEILMNRPSARNALGNVFVSQLLEA 342
           W PL  T  C+  P   GR E   R      Q GI  I+++ P  RNAL    +  L   
Sbjct: 23  WAPLT-TGFCSGGPAGIGRPEPGPRPTIARQQDGIRSIVLSDPKRRNALSLAMLKSLQSD 81

Query: 343 LAQLREDRHVRVLIFRSGVKGVFCAGADLKER--EQMSEAEVGVFVQRLRGLMNEIAAFP 516
           +    E + ++V+I  S    VF +G DLKE   EQ  +    VF Q    +M  I   P
Sbjct: 82  ILHEAESQDLKVIII-SAEGPVFSSGHDLKELTDEQGPDYHAEVF-QTCSEVMMLIQNHP 139

Query: 517 APTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLLPGAGGTQRLPRCLGVAL 696
            P IA ++             CD+ VA+  +   +     G+         L R +   +
Sbjct: 140 VPIIAMVNGLATAAGCQLVASCDIAVASDKSSFAMPGVNIGVFCSTPAVA-LGRAVPRKV 198

Query: 697 AKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQEILPQAPIAVRLGKLA 876
           A E++FTG  +S  +A   GL++  V +           + +A+++   +   + LGK A
Sbjct: 199 ALEMLFTGEPISAQEALLHGLLSRVVPEER----LEEETMRIARKVASLSRSVLSLGKAA 254

Query: 877 IDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK 993
             R +  D+ +   +       N+   D  EG+ AF +K
Sbjct: 255 FYRQLAQDLRTAYHLTSQTMVDNLGLPDGQEGVKAFLQK 293


>ref|XP_002692097.1| PREDICTED: enoyl Coenzyme A hydratase domain containing 3-like [Bos
           taurus].
          Length = 300

 Score = 72.4 bits (176), Expect = 6e-13
 Identities = 73/279 (26%), Positives = 116/279 (41%), Gaps = 4/279 (1%)
 Frame = +1

Query: 169 WRPLEKTRGCASSPVDAGR-EIQVRALEGLDQ-GITEILMNRPSARNALGNVFVSQLLEA 342
           W PL  T  C+  P   GR E   R      Q GI  I+++ P  RNAL    +  L   
Sbjct: 23  WAPLT-TGFCSGGPAGIGRPEPGPRPTIARQQDGIRSIVLSDPKRRNALSLAMLKSLQSD 81

Query: 343 LAQLREDRHVRVLIFRSGVKGVFCAGADLKER--EQMSEAEVGVFVQRLRGLMNEIAAFP 516
           +    E + ++V+I  S    VF +G DLKE   EQ  +    VF Q    +M  I   P
Sbjct: 82  ILHEAESQDLKVIII-SAEGPVFSSGHDLKELTDEQGPDYHAEVF-QTCSEVMMLIQNHP 139

Query: 517 APTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLLPGAGGTQRLPRCLGVAL 696
            P IA ++             CD+ VA+  +   +     G+         L R +   +
Sbjct: 140 VPIIAMVNGLATAAGCQLVASCDIAVASDKSSFAMPGVNIGVFCSTPAVA-LGRAVPRKV 198

Query: 697 AKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQEILPQAPIAVRLGKLA 876
           A E++FTG  +S  +A   GL++  V +           + +A+++   +   + LGK A
Sbjct: 199 ALEMLFTGEPISAQEALLHGLLSRVVPEER----LEEETMRIARKVASLSRSVLSLGKAA 254

Query: 877 IDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK 993
             R +  D+ +   +       N+   D  EG+ AF +K
Sbjct: 255 FYRQLAQDLRTAYHLTSQTMVDNLGLPDGQEGVKAFLQK 293


>ref|NP_001030492.1| enoyl-CoA hydratase domain-containing protein 1 [Bos taurus].
          Length = 306

 Score = 65.9 bits (159), Expect = 5e-11
 Identities = 49/213 (23%), Positives = 92/213 (43%), Gaps = 1/213 (0%)
 Frame = +1

Query: 244 LEGLDQGITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGA 423
           L+  + GI  + +N PS  NA   V + QLLE + +L      + LI R G K  F +G+
Sbjct: 56  LQKENSGIGILTLNNPSKMNAFSGVMMLQLLEKVIELENWTEGKGLIIR-GAKNTFSSGS 114

Query: 424 DLKEREQMSEAEVGVFV-QRLRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAA 600
           DL   + +   E G+ V   ++  +      P  ++A +              CD R+  
Sbjct: 115 DLNAVKALGTPEDGMAVCMFMQNTLTRFMRLPLISVALVQGRALGGGAEVTTACDFRLMT 174

Query: 601 SSAVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQ 780
           + + +  +    G++P  GG  RL   +G   A +++    +L   +A  +G+V+  +  
Sbjct: 175 TQSEIRFVHKEMGIIPSWGGATRLVEIIGGRQALKVLSGALKLDSEKALNIGMVDDILPS 234

Query: 781 NEEGNAAYHRALALAQEILPQAPIAVRLGKLAI 879
           ++E       A    Q+ +   P  +R  K ++
Sbjct: 235 SDE-TECLKEAQEWLQQFIKGPPEVIRALKKSV 266


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,284,348
Number of extensions: 1423258
Number of successful extensions: 8410
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 8187
Number of HSP's successfully gapped: 19
Length of query: 331
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,273,310
Effective search space: 3254314680
Effective search space used: 3254314680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013275
         (995 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003128050.2| PREDICTED: enoyl-CoA hydratase domain-contai...   439   e-124
Alignment   gi|XP_001928827.3| PREDICTED: methylglutaconyl-CoA hydratase, m...   282   2e-76
Alignment   gi|NP_001177104.1| enoyl-CoA hydratase, mitochondrial [Sus scro...   121   5e-28
Alignment   gi|XP_003362049.1| PREDICTED: enoyl-CoA hydratase, mitochondria...    97   2e-20
Alignment   gi|NP_999127.1| trifunctional enzyme subunit alpha, mitochondri...    86   4e-17
Alignment   gi|NP_001038072.1| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase,...    85   7e-17
Alignment   gi|XP_003358782.1| PREDICTED: peroxisomal bifunctional enzyme [...    82   4e-16
Alignment   gi|XP_003130864.2| PREDICTED: hypothetical protein LOC100513945...    78   9e-15
Alignment   gi|NP_001106914.1| enoyl-CoA delta isomerase 2, mitochondrial [...    60   2e-09

>ref|XP_003128050.2| PREDICTED: enoyl-CoA hydratase domain-containing protein 2,
           mitochondrial-like isoform 1 [Sus scrofa].
          Length = 275

 Score =  439 bits (1130), Expect = e-124
 Identities = 231/244 (94%), Positives = 231/244 (94%)
 Frame = +1

Query: 262 GITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKERE 441
           GITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKERE
Sbjct: 24  GITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKERE 83

Query: 442 QMSEAEVGVFVQRLRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGL 621
           QMSEAEVGVFVQRLRGLMNEIAAFPAPTIAAMD             CDLRVAASSAVMGL
Sbjct: 84  QMSEAEVGVFVQRLRGLMNEIAAFPAPTIAAMDGFALGGGLELALACDLRVAASSAVMGL 143

Query: 622 IETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAA 801
           IETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAA
Sbjct: 144 IETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAA 203

Query: 802 YHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAA 981
           YHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAA
Sbjct: 204 YHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAA 263

Query: 982 FREK 993
           FREK
Sbjct: 264 FREK 267


>ref|XP_001928827.3| PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial [Sus
           scrofa].
          Length = 338

 Score =  282 bits (721), Expect = 2e-76
 Identities = 149/300 (49%), Positives = 203/300 (67%)
 Frame = +1

Query: 94  GAWRHLPDGTPMLRTLASALRPPRRWRPLEKTRGCASSPVDAGREIQVRALEGLDQGITE 273
           G+W  LP G  +     +       WR     RG  SS      E++VR LE  ++GI  
Sbjct: 37  GSWTGLPVGPAIWARGWTPAAGGAAWR-----RGY-SSEAKTEDELRVRYLEEENRGIVV 90

Query: 274 ILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMSE 453
           + +NR  A+N+L    V  L +A+  L+ D+ VR +I RS V G+FCAGADLKER +M  
Sbjct: 91  LGINRAYAKNSLSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLKERVKMHS 150

Query: 454 AEVGVFVQRLRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETT 633
           +EVG FV +LR ++NEIA  P PTIAA+D             CD+RVAASSA MGL+ET 
Sbjct: 151 SEVGPFVSKLRAVINEIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETK 210

Query: 634 RGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRA 813
             ++PG GGTQRLPR +G++LAKELIF+ R L G +A+A+GL++H + QN+EG+AAY +A
Sbjct: 211 LAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKA 270

Query: 814 LALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK 993
           L LA+E LPQ P+A+R+ KLAI++G+EVD+ +G+AIE  CYAQ +PT+DRLEG+ AF+EK
Sbjct: 271 LDLAREFLPQGPVAIRVAKLAINQGMEVDLVTGLAIEEACYAQTVPTKDRLEGLLAFKEK 330


>ref|NP_001177104.1| enoyl-CoA hydratase, mitochondrial [Sus scrofa].
          Length = 290

 Score =  121 bits (304), Expect = 5e-28
 Identities = 91/291 (31%), Positives = 132/291 (45%), Gaps = 3/291 (1%)
 Frame = +1

Query: 130 LRTLASALRPP-RRWRPLEKTRGCASSPVDAGREIQVRALEGLDQGITEILMNRPSARNA 306
           LR L   +R P R W      R  ASS   A  E  V A +G    +  I +NRP A NA
Sbjct: 4   LRALLPRVRAPLRAWPGCPALRSLASS---AHFEHIVVAKKGKSSNVGLIQLNRPKALNA 60

Query: 307 LGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMS--EAEVGVFVQR 480
           L    + +L +AL    ED  V  ++   G K  F AGAD+KE +  +  +   G F+  
Sbjct: 61  LCKGLILELNQALQAFEEDPAVGAIVLTGGEKA-FAAGADIKEMQNQTFQDCYSGGFLSH 119

Query: 481 LRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLLPGAGG 660
                + ++    P IAA++             CD+  A   A  G  E   G +PG GG
Sbjct: 120 ----WDHLSRVRKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGTGG 175

Query: 661 TQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQEILP 840
           TQRL R +G +L  E++ TG R+S  +A+  GLV+               A+  A++I  
Sbjct: 176 TQRLTRAVGKSLTMEMVLTGDRISAQEAKQAGLVSKIFPV----ETLVEEAIQCAEKIAS 231

Query: 841 QAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK 993
            + I   + K +++   E  +A G+ +E   +     T DR EGM AF EK
Sbjct: 232 YSKIVTAMAKESVNAAFETSLAEGLKLEKKLFYSTFATEDRKEGMTAFVEK 282


>ref|XP_003362049.1| PREDICTED: enoyl-CoA hydratase, mitochondrial-like [Sus scrofa].
          Length = 341

 Score = 96.7 bits (239), Expect = 2e-20
 Identities = 71/255 (27%), Positives = 110/255 (43%), Gaps = 2/255 (0%)
 Frame = +1

Query: 235 VRALEGLDQGITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFC 414
           V A +G    +  I +NR           + +L +AL    ED  V  ++   G K  F 
Sbjct: 88  VVAKKGKSSNVGLIQLNRXXXXXXXCKGLILELNQALQAFEEDPAVGAIVLTGGEKA-FA 146

Query: 415 AGADLKEREQMS--EAEVGVFVQRLRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDL 588
           AGAD+KE +  +  +   G F+       + ++    P IAA++             CD+
Sbjct: 147 AGADIKEMQNQTFQDCYSGGFLSH----WDHLSRVRKPVIAAVNGYALGGGCELAMMCDI 202

Query: 589 RVAASSAVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNH 768
             A   A  G  E      P  GGTQRL R +G +L  E++ TG R+S  +A+  GLV+ 
Sbjct: 203 IYAGEKAQFGQPELLSETCPRTGGTQRLTRAVGKSLTMEMVLTGDRISAQEAKQAGLVSK 262

Query: 769 AVAQNEEGNAAYHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNI 948
                         A+  A++I   + I   + K +++   E  +A G+ +E   +    
Sbjct: 263 IFPV----ETLVEEAIQCAEKIASYSKIVTAMAKESVNAAFETSLAEGLKLEKKLFYSTF 318

Query: 949 PTRDRLEGMAAFREK 993
            T DR EGM AF EK
Sbjct: 319 ATEDRKEGMTAFVEK 333


>ref|NP_999127.1| trifunctional enzyme subunit alpha, mitochondrial [Sus scrofa].
          Length = 763

 Score = 85.5 bits (210), Expect = 4e-17
 Identities = 65/239 (27%), Positives = 107/239 (44%), Gaps = 5/239 (2%)
 Frame = +1

Query: 250 GLDQGITEILMNRPSAR-NALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGAD 426
           G+   +  I +N P+++ N LG    S+ +E + ++     +R  +  S   G F AGAD
Sbjct: 44  GVKGDVAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGAD 103

Query: 427 LKEREQMSEA-EVGVFVQRLRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAAS 603
           +      + + EV    Q  +    ++     P +AA++             C  R+A  
Sbjct: 104 INMLSACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATK 163

Query: 604 S--AVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVA 777
               V+G  E   G+LPGAGGTQRLP+ +GV  A +++ TGR +   +A+ +GLV+  V 
Sbjct: 164 DKKTVLGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLVE 223

Query: 778 QNEEG-NAAYHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIP 951
               G      R +   +E      +AV   K   D+ I      G+  +   YA +IP
Sbjct: 224 PLGPGLKPPEERTIEYLEE------VAVTFAKGLADKKISPKRDKGLVEKLTSYAMSIP 276


>ref|NP_001038072.1| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [Sus
           scrofa].
          Length = 322

 Score = 84.7 bits (208), Expect = 7e-17
 Identities = 77/298 (25%), Positives = 130/298 (43%), Gaps = 13/298 (4%)
 Frame = +1

Query: 139 LASALRPPRRWRPLEKTRGCAS-SPVDAGREIQVRALEGLDQGITEILMNRPSARNALGN 315
           L+ +L P   +   E ++   S +P      +QV A++   + +  + +NRP  RNA+  
Sbjct: 21  LSLSLHPMSSFTQEEASKAAPSEAPGHNYESLQVTAVQ---KHVLHVQLNRPEKRNAMNR 77

Query: 316 VFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKERE----QMSEAEVGVFVQRL 483
            F  +++    ++ +D   R ++  SG   +F +G DL +      Q    +V      L
Sbjct: 78  AFWREMVVCFNKIAQDPDCRAVVI-SGAGKMFTSGIDLVDMASDIFQPQGEDVARISWHL 136

Query: 484 RGLMNE-------IAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGL 642
             L+++       I   P P IAA+              CD+R  A  A   + E   GL
Sbjct: 137 HNLISKYQETFSVIEKCPKPVIAAIHGGCIGGGVDLITACDIRYCAQDAFFQVKEVDIGL 196

Query: 643 LPGAGGTQRLPRCLG-VALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALA 819
               G  QRLP+ +G  +L  EL FT R++   +A   GLV+      E        ALA
Sbjct: 197 AADVGTLQRLPKIIGNQSLVNELAFTARKMMADEALNSGLVSRIFPDQE---VLLEAALA 253

Query: 820 LAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK 993
           LA EI  ++P+AV+  K+ +    +  +A G+          + T+D ++ + A  EK
Sbjct: 254 LAAEIASKSPVAVQGTKINLLYSRDHSVAEGLNYMKSWNMSMLQTKDVIKSVQAAMEK 311


>ref|XP_003358782.1| PREDICTED: peroxisomal bifunctional enzyme [Sus scrofa].
          Length = 723

 Score = 82.4 bits (202), Expect = 4e-16
 Identities = 57/195 (29%), Positives = 92/195 (47%)
 Frame = +1

Query: 259 QGITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKER 438
           Q    +L  R    NAL    +  + E L +   D  V+ ++   G  G+F AGAD+   
Sbjct: 8   QNALALLRLRNPPVNALSVSVLHGIKEGLQKALTDHTVKAIVI-CGTDGIFSAGADIHGF 66

Query: 439 EQMSEAEVGVFVQRLRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMG 618
                +++      L  ++++I  +  P +AA+              C  R+A + A +G
Sbjct: 67  SAHKTSDL-----TLGDIVDKIQRYEKPVVAAIQGLALGGGLELALGCHYRIAHAEAQVG 121

Query: 619 LIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNA 798
             E T G+LPGA GTQ LPR +GV  A +LI +GR +S  +A+ LG+++  V      + 
Sbjct: 122 FPEVTLGILPGARGTQLLPRLIGVPAALDLITSGRHISANEARKLGILDEVV-----NSD 176

Query: 799 AYHRALALAQEILPQ 843
               A+  AQ +L Q
Sbjct: 177 PVEEAIRFAQRVLDQ 191


>ref|XP_003130864.2| PREDICTED: hypothetical protein LOC100513945 [Sus scrofa].
          Length = 845

 Score = 77.8 bits (190), Expect = 9e-15
 Identities = 76/282 (26%), Positives = 116/282 (41%), Gaps = 7/282 (2%)
 Frame = +1

Query: 169  WRPLEKTRGCASSPVDAGREIQVRALEGLDQ--GITEILMNRPSARNALGNVFVSQLLEA 342
            W PL     C+      GR      L    Q  GI  I++N P  RNAL    +  L   
Sbjct: 568  WAPLA-AGFCSRGSAGVGRPEPGPRLTSARQRDGIRSIVLNNPKRRNALSLAMLKSLQSD 626

Query: 343  LAQLREDRHVRVLIFRSGVKGVFCAGADLKE--REQMSEAEVGVFVQRLRGLMNEIAAFP 516
            L    E R ++V++  S    VF +G DLKE   EQ  +    VF +    +M  I   P
Sbjct: 627  LLHDAESRDLKVIVI-SAEGPVFSSGHDLKELTAEQGPDYHAEVF-RACSEVMMLIQNHP 684

Query: 517  APTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLL---PGAGGTQRLPRCLG 687
             P IA ++             CD+ VA+  +       T GL    PG    + LPR   
Sbjct: 685  VPIIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVTIGLFCSTPGVAVGRALPR--- 741

Query: 688  VALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQEILPQAPIAVRLG 867
              +A E++FTG  +S  +A   GL++  V +           + +A+++   +   + LG
Sbjct: 742  -KVALEMLFTGEPMSAQEALLHGLLSRVVPEER----LEEETMRIARKVASLSRPVLSLG 796

Query: 868  KLAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK 993
            K A  R +  D+ +   +       N+   D  EG+ AF +K
Sbjct: 797  KAAFYRQLAQDLRTAYHLASQTMVDNLGLPDAQEGIQAFLQK 838


>ref|NP_001106914.1| enoyl-CoA delta isomerase 2, mitochondrial [Sus scrofa].
          Length = 394

 Score = 60.1 bits (144), Expect = 2e-09
 Identities = 54/209 (25%), Positives = 89/209 (42%), Gaps = 4/209 (1%)
 Frame = +1

Query: 256 DQGITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKE 435
           + GIT I +NRP+ +NAL       ++ AL    ED     ++  SG    +C+G DL  
Sbjct: 147 EDGITTIRLNRPAKKNALTTQMYRDIMRALEAASEDSSRITVLTGSG--DYYCSGNDLTN 204

Query: 436 REQMSEAEVGVFVQR----LRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAAS 603
            + +   +V    Q     LR  ++    FP P IA ++              D+  A+ 
Sbjct: 205 FKDIPPDKVEERAQSSAVLLRDFVDRFIDFPKPLIAVVNGPAVGISVTLLGLFDVVYASD 264

Query: 604 SAVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQN 783
            A      +  G  P    +   P+ +G + A E++  G++L+  +A A GLV      +
Sbjct: 265 RATFHTPFSHLGQSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGLVTAVFPDD 324

Query: 784 EEGNAAYHRALALAQEILPQAPIAVRLGK 870
                 + R  A A+  LP  P A+R+ K
Sbjct: 325 TFQKEVWARLKAYAK--LP--PNAMRIAK 349


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,415,060
Number of extensions: 926748
Number of successful extensions: 5521
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 5348
Number of HSP's successfully gapped: 9
Length of query: 331
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 232
Effective length of database: 8,879,129
Effective search space: 2059957928
Effective search space used: 2059957928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013275
         (995 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_081004.2| enoyl-CoA hydratase domain-containing protein 2...   437   e-123
Alignment   gi|NP_057918.2| methylglutaconyl-CoA hydratase, mitochondrial p...   276   1e-74
Alignment   gi|NP_444349.1| enoyl-CoA hydratase, mitochondrial precursor [M...   117   1e-26
Alignment   gi|NP_849209.1| trifunctional enzyme subunit alpha, mitochondri...    90   2e-18
Alignment   gi|NP_058052.1| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mi...    82   5e-16
Alignment   gi|NP_076226.2| peroxisomal bifunctional enzyme [Mus musculus].       79   7e-15
Alignment   gi|NP_001103665.1| enoyl-CoA hydratase domain-containing protei...    73   4e-13
Alignment   gi|NP_080131.4| enoyl-CoA hydratase domain-containing protein 1...    73   4e-13
Alignment   gi|NP_077170.2| enoyl-CoA hydratase domain-containing protein 3...    70   2e-12
Alignment   gi|NP_666220.1| 3-hydroxyisobutyryl-CoA hydrolase, mitochondria...    67   3e-11

>ref|NP_081004.2| enoyl-CoA hydratase domain-containing protein 2, mitochondrial
           precursor [Mus musculus].
          Length = 296

 Score =  437 bits (1123), Expect = e-123
 Identities = 232/289 (80%), Positives = 247/289 (85%)
 Frame = +1

Query: 127 MLRTLASALRPPRRWRPLEKTRGCASSPVDAGREIQVRALEGLDQGITEILMNRPSARNA 306
           MLR L  ALR P  WR     R CAS       EIQV+AL G +QGITEILMNRP+ARNA
Sbjct: 1   MLRVLPRALRLPCSWR-FSGARDCASHATTRTPEIQVQALTGPNQGITEILMNRPNARNA 59

Query: 307 LGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLR 486
           LGNVFVS+LLEALAQLRED+ VRVL+FRS VKGVFCAGADLKEREQMS+ EVG FVQRLR
Sbjct: 60  LGNVFVSELLEALAQLREDQQVRVLLFRSAVKGVFCAGADLKEREQMSDVEVGTFVQRLR 119

Query: 487 GLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLLPGAGGTQ 666
           GLM+EIAAFP PTIAAMD             CDLR+AASSAVMGLIETTRGLLPGAGGTQ
Sbjct: 120 GLMSEIAAFPVPTIAAMDGFALGGGLELALACDLRIAASSAVMGLIETTRGLLPGAGGTQ 179

Query: 667 RLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQEILPQA 846
           RLPRCLGVALAKELIFTGRRL+G QA+ LGLVNHAVAQNEEGNAAYHRALALAQEILPQA
Sbjct: 180 RLPRCLGVALAKELIFTGRRLNGAQARELGLVNHAVAQNEEGNAAYHRALALAQEILPQA 239

Query: 847 PIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK 993
           PIAVRLGK+AIDRG+EVDIASGMAIE +CYAQNIPT+DRLEGMAAFREK
Sbjct: 240 PIAVRLGKVAIDRGMEVDIASGMAIEQMCYAQNIPTQDRLEGMAAFREK 288


>ref|NP_057918.2| methylglutaconyl-CoA hydratase, mitochondrial precursor [Mus
           musculus].
          Length = 314

 Score =  276 bits (707), Expect = 1e-74
 Identities = 141/278 (50%), Positives = 193/278 (69%)
 Frame = +1

Query: 160 PRRWRPLEKTRGCASSPVDAGREIQVRALEGLDQGITEILMNRPSARNALGNVFVSQLLE 339
           P  W      R   SS V    E++VR LE  ++GI  + +NR   +NAL    +  L +
Sbjct: 29  PAAWARGTAPRRGYSSEVKTEDELRVRHLEEENRGIVVLGINRAYGKNALSKNLLKMLSK 88

Query: 340 ALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLRGLMNEIAAFPA 519
           A+  L+ D+ VR +I RS V G+FCAGADLKER +M  +EVG FV ++R ++N+IA  P 
Sbjct: 89  AVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMHSSEVGPFVSKIRSVINDIANLPV 148

Query: 520 PTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLLPGAGGTQRLPRCLGVALA 699
           PTIAA+D             CD+RVAASSA MGL+ET   ++PG GGTQRLPR +G++LA
Sbjct: 149 PTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLA 208

Query: 700 KELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQEILPQAPIAVRLGKLAI 879
           KELIF+ R L G +A+A+GL++H + QN+EG+AAY +AL LA+E LPQ P+A+R+ KLAI
Sbjct: 209 KELIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAI 268

Query: 880 DRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK 993
           ++G+EVD+ +G+AIE  CYAQ I T+DRLEG+ AF+EK
Sbjct: 269 NQGMEVDLVTGLAIEEACYAQTISTKDRLEGLLAFKEK 306


>ref|NP_444349.1| enoyl-CoA hydratase, mitochondrial precursor [Mus musculus].
          Length = 290

 Score =  117 bits (294), Expect = 1e-26
 Identities = 77/249 (30%), Positives = 118/249 (47%)
 Frame = +1

Query: 247 EGLDQGITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGAD 426
           +G +  +  I +NRP A NAL N  + +L +AL    +D  V  ++   G K  F AGAD
Sbjct: 41  KGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEQDPAVGAIVLTGGDKA-FAAGAD 99

Query: 427 LKEREQMSEAEVGVFVQRLRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASS 606
           +KE +  +  +   +  +     + I     P IAA++             CD+  A   
Sbjct: 100 IKEMQNRTFQDC--YSSKFLSHWDHITRVKKPVIAAVNGYALGGGCELAMMCDIIYAGEK 157

Query: 607 AVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNE 786
           A  G  E   G +PGAGGTQRL R +G +LA E++ TG R+S   A+  GLV+      +
Sbjct: 158 AQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVEK 217

Query: 787 EGNAAYHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRL 966
                   A+  A++I   + I V + K +++   E+ +  G  +E   +     T DR 
Sbjct: 218 ----LVEEAIQCAEKIASNSKIVVAMAKESVNAAFEMTLTEGNKLEKRLFYSTFATDDRR 273

Query: 967 EGMAAFREK 993
           EGM AF EK
Sbjct: 274 EGMTAFVEK 282


>ref|NP_849209.1| trifunctional enzyme subunit alpha, mitochondrial precursor [Mus
           musculus].
          Length = 763

 Score = 90.1 bits (222), Expect = 2e-18
 Identities = 66/263 (25%), Positives = 116/263 (44%), Gaps = 7/263 (2%)
 Frame = +1

Query: 184 KTRGCASSPVDAGREIQVRAL--EGLDQGITEILMNRPSAR-NALGNVFVSQLLEALAQL 354
           ++RGC          +  R     G+   +  I +N P+++ N L     S+ +E + ++
Sbjct: 20  RSRGCICRSFTTSSALLTRTHINYGVKGDVAVIRINSPNSKVNTLNKEVQSEFIEVMNEI 79

Query: 355 REDRHVRVLIFRSGVKGVFCAGADLKEREQMSEAEVGVFV-QRLRGLMNEIAAFPAPTIA 531
             +  +R  +  S   G F AGAD+      +  +    + Q  + +  ++   P P +A
Sbjct: 80  WANDQIRSAVLISSKPGCFVAGADINMLSSCTTPQEATRISQEGQRMFEKLEKSPKPVVA 139

Query: 532 AMDXXXXXXXXXXXXXCDLRVAASS--AVMGLIETTRGLLPGAGGTQRLPRCLGVALAKE 705
           A+              C  R+A      V+G+ E   G+LPGAGGTQRLP+ +GV  A +
Sbjct: 140 AISGSCLGGGLELAIACQYRIATKDRKTVLGVPEVLLGILPGAGGTQRLPKMVGVPAAFD 199

Query: 706 LIFTGRRLSGMQAQALGLVNHAVAQNEEG-NAAYHRALALAQEILPQAPIAVRLGKLAID 882
           ++ TGR +   +A+ +GLV+  V     G  +   R +   +E      +AV   K   D
Sbjct: 200 MMLTGRNIRADRAKKMGLVDQLVEPLGPGIKSPEERTIEYLEE------VAVNFAKGLAD 253

Query: 883 RGIEVDIASGMAIEGICYAQNIP 951
           R +    + G+  +   YA  +P
Sbjct: 254 RKVSAKQSKGLVEKLTTYAMTVP 276


>ref|NP_058052.1| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial
           precursor [Mus musculus].
          Length = 327

 Score = 82.4 bits (202), Expect = 5e-16
 Identities = 66/255 (25%), Positives = 113/255 (44%), Gaps = 12/255 (4%)
 Frame = +1

Query: 265 ITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADL----K 432
           +  + +NRP  RNA+   F  +L+E   ++ +D   R ++  SG   +F +G DL     
Sbjct: 66  VLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVV-SGAGKMFTSGIDLMDMAS 124

Query: 433 EREQMSEAEVGVFVQRLRGLMNE-------IAAFPAPTIAAMDXXXXXXXXXXXXXCDLR 591
           E  Q S  +       LR L+++       I   P P IAA+              CD+R
Sbjct: 125 ELMQPSGDDAARIAWYLRDLISKYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLVSACDIR 184

Query: 592 VAASSAVMGLIETTRGLLPGAGGTQRLPRCLG-VALAKELIFTGRRLSGMQAQALGLVNH 768
                A   + E   GL    G  QRLP+ +G  +L  EL F+ R++   +A   GLV+ 
Sbjct: 185 YCTQDAFFQIKEVDMGLAADVGTLQRLPKVIGNQSLVNELTFSARKMMADEALDSGLVSR 244

Query: 769 AVAQNEEGNAAYHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNI 948
                ++ +A  + A ALA +I  ++P+AV+  K+ +    +  +   +          +
Sbjct: 245 VF---QDKDAMLNAAFALAADISSKSPVAVQGSKINLIYSRDHSVDESLDYMATWNMSML 301

Query: 949 PTRDRLEGMAAFREK 993
            T+D ++ + A  EK
Sbjct: 302 QTQDIIKSVQAAMEK 316


>ref|NP_076226.2| peroxisomal bifunctional enzyme [Mus musculus].
          Length = 718

 Score = 78.6 bits (192), Expect = 7e-15
 Identities = 52/181 (28%), Positives = 86/181 (47%)
 Frame = +1

Query: 301 NALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMSEAEVGVFVQR 480
           NA+    ++++   L +   D  VR ++   G    FCAGAD+   +  +   +G     
Sbjct: 22  NAISPTVITEVRNGLQKASLDHTVRAIVI-CGANDNFCAGADIHGFKSPTGLTLG----- 75

Query: 481 LRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLLPGAGG 660
              L++EI  +  P +AA+              C  R+A + A +G  E   G+LPGA G
Sbjct: 76  --SLVDEIQRYQKPVVAAIQGVALGGGLELALGCHYRIANAKARVGFPEVMLGILPGARG 133

Query: 661 TQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQEILP 840
           TQ LPR +GV +A +LI +GR +S  +A  LG+++  V  +    A       + + I P
Sbjct: 134 TQLLPRVVGVPVALDLITSGRHISTDEALKLGILDVVVKSDPVEEAIKFAQTVIGKPIEP 193

Query: 841 Q 843
           +
Sbjct: 194 R 194


>ref|NP_001103665.1| enoyl-CoA hydratase domain-containing protein 1 isoform b [Mus
           musculus].
          Length = 299

 Score = 72.8 bits (177), Expect = 4e-13
 Identities = 53/222 (23%), Positives = 97/222 (43%), Gaps = 1/222 (0%)
 Frame = +1

Query: 262 GITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKERE 441
           GI  + +N P+  NA   V + QLLE + +L      + LI   G K  FC+G+DL   +
Sbjct: 55  GIGILTLNNPNKMNAFSGVMMLQLLERVIELENWTEGKGLIIH-GAKNTFCSGSDLNAVK 113

Query: 442 QMSEAEVGVFVQR-LRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMG 618
            +S  E GV +   ++  +      P  ++A +              CD R+    +V+ 
Sbjct: 114 ALSTPESGVALSMFMQNTLTRFMRLPLISVALVQGWAMGGGAELTTACDFRLMTEESVIR 173

Query: 619 LIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNA 798
            +    G++P  GGT RL   +G   A +++    +L   +A  +GL +  +  ++E   
Sbjct: 174 FVHKEMGIVPSWGGTSRLVEIIGSRQALKVLSGTLKLDSKEALNIGLTDEVLQPSDE-TT 232

Query: 799 AYHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIE 924
           A  +A    ++ +   P  +R  K ++    E+ I   +  E
Sbjct: 233 ALEQAQEWLEKFVSGPPQVIRGLKKSVCSARELYIEEALQNE 274


>ref|NP_080131.4| enoyl-CoA hydratase domain-containing protein 1 isoform a [Mus
           musculus].
          Length = 322

 Score = 72.8 bits (177), Expect = 4e-13
 Identities = 53/222 (23%), Positives = 97/222 (43%), Gaps = 1/222 (0%)
 Frame = +1

Query: 262 GITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKERE 441
           GI  + +N P+  NA   V + QLLE + +L      + LI   G K  FC+G+DL   +
Sbjct: 78  GIGILTLNNPNKMNAFSGVMMLQLLERVIELENWTEGKGLIIH-GAKNTFCSGSDLNAVK 136

Query: 442 QMSEAEVGVFVQR-LRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMG 618
            +S  E GV +   ++  +      P  ++A +              CD R+    +V+ 
Sbjct: 137 ALSTPESGVALSMFMQNTLTRFMRLPLISVALVQGWAMGGGAELTTACDFRLMTEESVIR 196

Query: 619 LIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNA 798
            +    G++P  GGT RL   +G   A +++    +L   +A  +GL +  +  ++E   
Sbjct: 197 FVHKEMGIVPSWGGTSRLVEIIGSRQALKVLSGTLKLDSKEALNIGLTDEVLQPSDE-TT 255

Query: 799 AYHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIE 924
           A  +A    ++ +   P  +R  K ++    E+ I   +  E
Sbjct: 256 ALEQAQEWLEKFVSGPPQVIRGLKKSVCSARELYIEEALQNE 297


>ref|NP_077170.2| enoyl-CoA hydratase domain-containing protein 3, mitochondrial
           precursor [Mus musculus].
          Length = 300

 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 68/277 (24%), Positives = 110/277 (39%), Gaps = 2/277 (0%)
 Frame = +1

Query: 169 WRPLEKTRGCASSPVDAGREIQVRALEGLDQ-GITEILMNRPSARNALGNVFVSQLLEAL 345
           W PL        S   AG E + R      Q GI  I+++ P  RNAL    +  L   +
Sbjct: 23  WAPLSAGFCSPGSAGPAGSESEPRLTSTRQQDGIRNIVLSNPRRRNALSLAMLKSLRSDI 82

Query: 346 AQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMSEAEVGVFV-QRLRGLMNEIAAFPAP 522
               E   ++V+I  S    VF +G DLKE       +    V Q    +M  I   P P
Sbjct: 83  LHEAESEDLKVIII-SAEGPVFSSGHDLKELTDAQGRDYHAEVFQTCSEVMMLIRNHPVP 141

Query: 523 TIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLLPGAGGTQRLPRCLGVALAK 702
            +A ++             CD+ VA+  +         GL         L R +   +A 
Sbjct: 142 ILAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPAVA-LGRAVPRKVAL 200

Query: 703 ELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQEILPQAPIAVRLGKLAID 882
           E++FTG  +S  +A   GL++  V + +         + +A++I   +   V LGK    
Sbjct: 201 EMLFTGEPISAQEALRHGLISKVVPEEQ----LEAETMRIAKKISSLSRSVVALGKATFY 256

Query: 883 RGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK 993
           + +  D+ +   +       N+  +D  EG+ AF +K
Sbjct: 257 KQLPQDLRTAYFLASQAMVDNLALQDGQEGIEAFIQK 293


>ref|NP_666220.1| 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial precursor [Mus
           musculus].
          Length = 385

 Score = 66.6 bits (161), Expect = 3e-11
 Identities = 50/170 (29%), Positives = 68/170 (40%), Gaps = 3/170 (1%)
 Frame = +1

Query: 274 ILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMSE 453
           I +NRP   NAL    + Q+   L    +D    ++I +      FCAG D+K   +  +
Sbjct: 48  ITLNRPKFLNALSLNMIRQIYPQLKTWEQDPDTFLIIIKGAGGKAFCAGGDIKALSEAKK 107

Query: 454 AEVGVFVQRLRG---LMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLI 624
           A   +     R    L N IA+   P +A +D                RVA   ++  + 
Sbjct: 108 ARQNLTQDLFREEYILNNAIASCQKPYVALIDGITMGGGVGLSVHGQFRVATERSLFAMP 167

Query: 625 ETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAV 774
           ET  GL P  GG   LPR  G  L   L  TG RL G      G+  H V
Sbjct: 168 ETGIGLFPDVGGGYFLPRLQG-KLGYFLALTGYRLKGRDVHRAGIATHFV 216


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,958,438
Number of extensions: 1146944
Number of successful extensions: 5974
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 5779
Number of HSP's successfully gapped: 17
Length of query: 331
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 229
Effective length of database: 12,553,887
Effective search space: 2874840123
Effective search space used: 2874840123
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013275
         (995 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001185890.1| enoyl-CoA hydratase domain-containing protei...   451   e-127
Alignment   gi|NP_060751.2| enoyl-CoA hydratase domain-containing protein 2...   404   e-113
Alignment   gi|NP_001185891.1| enoyl-CoA hydratase domain-containing protei...   365   e-101
Alignment   gi|NP_001689.1| methylglutaconyl-CoA hydratase, mitochondrial p...   278   6e-75
Alignment   gi|NP_004083.3| enoyl-CoA hydratase, mitochondrial precursor [H...   120   3e-27
Alignment   gi|NP_001389.2| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mi...    86   7e-17
Alignment   gi|NP_078969.2| enoyl-CoA hydratase domain-containing protein 3...    80   3e-15
Alignment   gi|NP_000173.2| trifunctional enzyme subunit alpha, mitochondri...    80   3e-15
Alignment   gi|NP_001957.2| peroxisomal bifunctional enzyme isoform 1 [Homo...    77   2e-14
Alignment   gi|NP_001002030.1| enoyl-CoA hydratase domain-containing protei...    72   8e-13

>ref|NP_001185890.1| enoyl-CoA hydratase domain-containing protein 2, mitochondrial
           isoform 1 [Homo sapiens].
          Length = 292

 Score =  451 bits (1159), Expect = e-127
 Identities = 243/289 (84%), Positives = 251/289 (86%)
 Frame = +1

Query: 127 MLRTLASALRPPRRWRPLEKTRGCASSPVDAGREIQVRALEGLDQGITEILMNRPSARNA 306
           MLR L   LRP   WRPL + RGCAS     G EIQVRAL G DQGITEILMNRPSARNA
Sbjct: 1   MLRVLC-LLRP---WRPL-RARGCASDGAAGGSEIQVRALAGPDQGITEILMNRPSARNA 55

Query: 307 LGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLR 486
           LGNVFVS+LLE LAQLREDR VRVL+FRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLR
Sbjct: 56  LGNVFVSELLETLAQLREDRQVRVLLFRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLR 115

Query: 487 GLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLLPGAGGTQ 666
           GLMN+IAAFPAPTIAAMD             CDLRVAASSAVMGLIETTRGLLPGAGGTQ
Sbjct: 116 GLMNDIAAFPAPTIAAMDGFALGGGLELALACDLRVAASSAVMGLIETTRGLLPGAGGTQ 175

Query: 667 RLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQEILPQA 846
           RLPRCLGVALAKELIFTGRRLSG +A  LGLVNHAVAQNEEG+AAY RA ALAQEILPQA
Sbjct: 176 RLPRCLGVALAKELIFTGRRLSGTEAHVLGLVNHAVAQNEEGDAAYQRARALAQEILPQA 235

Query: 847 PIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK 993
           PIAVRLGK+AIDRG EVDIASGMAIEG+CYAQNIPTRDRLEGMAAFREK
Sbjct: 236 PIAVRLGKVAIDRGTEVDIASGMAIEGMCYAQNIPTRDRLEGMAAFREK 284


>ref|NP_060751.2| enoyl-CoA hydratase domain-containing protein 2, mitochondrial
           isoform 2 [Homo sapiens].
          Length = 261

 Score =  404 bits (1038), Expect = e-113
 Identities = 225/289 (77%), Positives = 233/289 (80%)
 Frame = +1

Query: 127 MLRTLASALRPPRRWRPLEKTRGCASSPVDAGREIQVRALEGLDQGITEILMNRPSARNA 306
           MLR L   LRP   WRPL + RGCAS     G EIQVRAL G DQGITEILMNRPSARNA
Sbjct: 1   MLRVLC-LLRP---WRPL-RARGCASDGAAGGSEIQVRALAGPDQGITEILMNRPSARNA 55

Query: 307 LGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLR 486
           LGNVFVS+LLE LAQLREDR VRVL+FRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLR
Sbjct: 56  LGNVFVSELLETLAQLREDRQVRVLLFRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLR 115

Query: 487 GLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLLPGAGGTQ 666
           GLMN+IA                               SSAVMGLIETTRGLLPGAGGTQ
Sbjct: 116 GLMNDIA-------------------------------SSAVMGLIETTRGLLPGAGGTQ 144

Query: 667 RLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQEILPQA 846
           RLPRCLGVALAKELIFTGRRLSG +A  LGLVNHAVAQNEEG+AAY RA ALAQEILPQA
Sbjct: 145 RLPRCLGVALAKELIFTGRRLSGTEAHVLGLVNHAVAQNEEGDAAYQRARALAQEILPQA 204

Query: 847 PIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK 993
           PIAVRLGK+AIDRG EVDIASGMAIEG+CYAQNIPTRDRLEGMAAFREK
Sbjct: 205 PIAVRLGKVAIDRGTEVDIASGMAIEGMCYAQNIPTRDRLEGMAAFREK 253


>ref|NP_001185891.1| enoyl-CoA hydratase domain-containing protein 2, mitochondrial
           isoform 3 [Homo sapiens].
          Length = 244

 Score =  365 bits (937), Expect = e-101
 Identities = 210/289 (72%), Positives = 217/289 (75%)
 Frame = +1

Query: 127 MLRTLASALRPPRRWRPLEKTRGCASSPVDAGREIQVRALEGLDQGITEILMNRPSARNA 306
           MLR L   LRP   WRPL + RGCAS     G EIQVRAL G DQGITEILMNRPSARNA
Sbjct: 1   MLRVLC-LLRP---WRPL-RARGCASDGAAGGSEIQVRALAGPDQGITEILMNRPSARNA 55

Query: 307 LGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLR 486
           LGNVFVS+LLE LAQLREDR VRVL+FRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLR
Sbjct: 56  LGNVFVSELLETLAQLREDRQVRVLLFRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLR 115

Query: 487 GLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLLPGAGGTQ 666
           GLMN+IA                               SSAVMGLIETTRGLLPGAGGTQ
Sbjct: 116 GLMNDIA-------------------------------SSAVMGLIETTRGLLPGAGGTQ 144

Query: 667 RLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQEILPQA 846
           RLPRCLGVALAKELIFTGRRLSG +A  LGLVNHAVAQNEEG+AAY RA ALAQEILPQ 
Sbjct: 145 RLPRCLGVALAKELIFTGRRLSGTEAHVLGLVNHAVAQNEEGDAAYQRARALAQEILPQ- 203

Query: 847 PIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK 993
                           VDIASGMAIEG+CYAQNIPTRDRLEGMAAFREK
Sbjct: 204 ----------------VDIASGMAIEGMCYAQNIPTRDRLEGMAAFREK 236


>ref|NP_001689.1| methylglutaconyl-CoA hydratase, mitochondrial precursor [Homo
           sapiens].
          Length = 339

 Score =  278 bits (711), Expect = 6e-75
 Identities = 138/264 (52%), Positives = 192/264 (72%)
 Frame = +1

Query: 202 SSPVDAGREIQVRALEGLDQGITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVL 381
           SS +    E++VR LE  ++GI  + +NR   +N+L    +  L +A+  L+ D+ VR +
Sbjct: 68  SSEMKTEDELRVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTI 127

Query: 382 IFRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLRGLMNEIAAFPAPTIAAMDXXXXXXX 561
           I RS V G+FCAGADLKER +MS +EVG FV ++R ++N+IA  P PTIAA+D       
Sbjct: 128 IIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGG 187

Query: 562 XXXXXXCDLRVAASSAVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQ 741
                 CD+RVAASSA MGL+ET   ++PG GGTQRLPR +G++LAKELIF+ R L G +
Sbjct: 188 LELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKE 247

Query: 742 AQALGLVNHAVAQNEEGNAAYHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAI 921
           A+A+GL++H + QN+EG+AAY +AL LA+E LPQ P+A+R+ KLAI++G+EVD+ +G+AI
Sbjct: 248 AKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAI 307

Query: 922 EGICYAQNIPTRDRLEGMAAFREK 993
           E  CYAQ IPT+DRLEG+ AF+EK
Sbjct: 308 EEACYAQTIPTKDRLEGLLAFKEK 331


>ref|NP_004083.3| enoyl-CoA hydratase, mitochondrial precursor [Homo sapiens].
          Length = 290

 Score =  120 bits (300), Expect = 3e-27
 Identities = 87/292 (29%), Positives = 130/292 (44%), Gaps = 3/292 (1%)
 Frame = +1

Query: 127 MLRTLASALRPPRR---WRPLEKTRGCASSPVDAGREIQVRALEGLDQGITEILMNRPSA 297
           +L  +   LRPP R   WRP             A  E  +    G +  +  I +NRP A
Sbjct: 7   LLSCVRGPLRPPVRCPAWRPFAS---------GANFEYIIAEKRGKNNTVGLIQLNRPKA 57

Query: 298 RNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMSEAEVGVFVQ 477
            NAL +  + +L +AL    ED  V  ++   G K  F AGAD+KE + +S  +   +  
Sbjct: 58  LNALCDGLIDELNQALKTFEEDPAVGAIVLTGGDKA-FAAGADIKEMQNLSFQDC--YSS 114

Query: 478 RLRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLLPGAG 657
           +     + +     P IAA++             CD+  A   A     E   G +PGAG
Sbjct: 115 KFLKHWDHLTQVKKPVIAAVNGYAFGGGCELAMMCDIIYAGEKAQFAQPEILIGTIPGAG 174

Query: 658 GTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQEIL 837
           GTQRL R +G +LA E++ TG R+S   A+  GLV+               A+  A++I 
Sbjct: 175 GTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKICPV----ETLVEEAIQCAEKIA 230

Query: 838 PQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK 993
             + I V + K +++   E+ +  G  +E   +     T DR EGM AF EK
Sbjct: 231 SNSKIVVAMAKESVNAAFEMTLTEGSKLEKKLFYSTFATDDRKEGMTAFVEK 282


>ref|NP_001389.2| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial
           precursor [Homo sapiens].
          Length = 328

 Score = 85.5 bits (210), Expect = 7e-17
 Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 12/254 (4%)
 Frame = +1

Query: 265 ITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQ 444
           +  + +NRP+ RNA+  VF  +++E   ++  D   R ++  SG   +F AG DL +   
Sbjct: 67  VLHVQLNRPNKRNAMNKVFWREMVECFNKISRDADCRAVVI-SGAGKMFTAGIDLMDMAS 125

Query: 445 MSEAEVGVFVQRLRGLM-----------NEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLR 591
                 G  V R+   +           N I   P P IAA+              CD+R
Sbjct: 126 DILQPKGDDVARISWYLRDIITRYQETFNVIERCPKPVIAAVHGGCIGGGVDLVTACDIR 185

Query: 592 VAASSAVMGLIETTRGLLPGAGGTQRLPRCLG-VALAKELIFTGRRLSGMQAQALGLVNH 768
             A  A   + E   GL    G  QRLP+ +G  +L  EL FT R++   +A   GLV+ 
Sbjct: 186 YCAQDAFFQVKEVDVGLAADVGTLQRLPKVIGNQSLVNELAFTARKMMADEALGSGLVSR 245

Query: 769 AVAQNEEGNAAYHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNI 948
                E        ALALA EI  ++P+AV+  K+ +    +  +A  +          +
Sbjct: 246 VFPDKE---VMLDAALALAAEISSKSPVAVQSTKVNLLYSRDHSVAESLNYVASWNMSML 302

Query: 949 PTRDRLEGMAAFRE 990
            T+D ++ + A  E
Sbjct: 303 QTQDLVKSVQATTE 316


>ref|NP_078969.2| enoyl-CoA hydratase domain-containing protein 3, mitochondrial
           precursor [Homo sapiens].
          Length = 303

 Score = 80.1 bits (196), Expect = 3e-15
 Identities = 74/276 (26%), Positives = 117/276 (42%), Gaps = 8/276 (2%)
 Frame = +1

Query: 190 RGCASSPVDAGR---EIQVRALEGLDQGITEILMNRPSARNALGNVFVSQLLEALAQLRE 360
           R C+  P  AGR   E +  +   LD GI  I+++ P  RN L    +  L   +    +
Sbjct: 29  RFCSRDPAGAGRRESEPRPTSARQLD-GIRNIVLSNPKKRNTLSLAMLKSLQSDILHDAD 87

Query: 361 DRHVRVLIFRSGVKGVFCAGADLKE--REQMSEAEVGVFVQRLRGLMNEIAAFPAPTIAA 534
              ++V+I  S    VF +G DLKE   EQ  +    VF Q    +M  I   P P IA 
Sbjct: 88  SNDLKVIII-SAEGPVFSSGHDLKELTEEQGRDYHAEVF-QTCSKVMMHIRNHPVPVIAM 145

Query: 535 MDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLL---PGAGGTQRLPRCLGVALAKE 705
           ++             CD+ VA+  +         GL    PG    + +PR     +A E
Sbjct: 146 VNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVALARAVPR----KVALE 201

Query: 706 LIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQEILPQAPIAVRLGKLAIDR 885
           ++FTG  +S  +A   GL++  V + E         + +A++I   +   V LGK    +
Sbjct: 202 MLFTGEPISAQEALLHGLLSKVVPEAE----LQEETMRIARKIASLSRPVVSLGKATFYK 257

Query: 886 GIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK 993
            +  D+ +   +       N+  RD  EG+ AF +K
Sbjct: 258 QLPQDLGTAYYLTSQAMVDNLALRDGQEGITAFLQK 293


>ref|NP_000173.2| trifunctional enzyme subunit alpha, mitochondrial precursor [Homo
           sapiens].
          Length = 763

 Score = 80.1 bits (196), Expect = 3e-15
 Identities = 62/239 (25%), Positives = 103/239 (43%), Gaps = 5/239 (2%)
 Frame = +1

Query: 250 GLDQGITEILMNRPSAR-NALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGAD 426
           G+   +  + +N P+++ N L     S+  E + ++     +R  +  S   G F AGAD
Sbjct: 44  GVKGDVAVVRINSPNSKVNTLSKELHSEFSEVMNEIWASDQIRSAVLISSKPGCFIAGAD 103

Query: 427 LKEREQMSEA-EVGVFVQRLRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAAS 603
           +          EV    Q  + ++ ++     P +AA++             C  R+A  
Sbjct: 104 INMLAACKTLQEVTQLSQEAQRIVEKLEKSTKPIVAAINGSCLGGGLEVAISCQYRIATK 163

Query: 604 S--AVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVA 777
               V+G  E   G LPGAGGTQRLP+ +GV  A +++ TGR +   +A+ +GLV+  V 
Sbjct: 164 DRKTVLGTPEVLLGALPGAGGTQRLPKMVGVPAALDMMLTGRSIRADRAKKMGLVDQLVE 223

Query: 778 QNEEG-NAAYHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIP 951
               G      R +   +E      +A+   K   D+ I      G+  +   YA  IP
Sbjct: 224 PLGPGLKPPEERTIEYLEE------VAITFAKGLADKKISPKRDKGLVEKLTAYAMTIP 276


>ref|NP_001957.2| peroxisomal bifunctional enzyme isoform 1 [Homo sapiens].
          Length = 723

 Score = 77.0 bits (188), Expect = 2e-14
 Identities = 51/158 (32%), Positives = 78/158 (49%)
 Frame = +1

Query: 301 NALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMSEAEVGVFVQR 480
           NA+    +  + E L +   D  ++ ++   G +G F AGAD++       +    F   
Sbjct: 22  NAISTTLLRDIKEGLQKAVIDHTIKAIVI-CGAEGKFSAGADIR-----GFSAPRTFGLT 75

Query: 481 LRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLLPGAGG 660
           L  +++EI     P +AA+              C  R+A + A +GL E T GLLPGA G
Sbjct: 76  LGHVVDEIQRNEKPVVAAIQGMAFGGGLELALGCHYRIAHAEAQVGLPEVTLGLLPGARG 135

Query: 661 TQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAV 774
           TQ LPR  GV  A +LI +GRR+   +A  LG+++  V
Sbjct: 136 TQLLPRLTGVPAALDLITSGRRILADEALKLGILDKVV 173


>ref|NP_001002030.1| enoyl-CoA hydratase domain-containing protein 1 isoform 1 [Homo
           sapiens].
          Length = 301

 Score = 72.0 bits (175), Expect = 8e-13
 Identities = 58/232 (25%), Positives = 100/232 (43%), Gaps = 5/232 (2%)
 Frame = +1

Query: 244 LEGLDQGITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGA 423
           L+  D GI  + +N PS  NA   V + QLLE + +L      + LI R G K  F +G+
Sbjct: 51  LQKEDNGIGILTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGLIVR-GAKNTFSSGS 109

Query: 424 DLKEREQMSEAEVGVFV-QRLRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAA 600
           DL   + +   E G+ V   ++  +      P  ++A +              CD R+  
Sbjct: 110 DLNAVKSLGTPEDGMAVCMFMQNTLTRFMRLPLISVALVQGWALGGGAEFTTACDFRLMT 169

Query: 601 SSAVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQ 780
             + +  +    G++P  GGT RL   +G   A +++    +L    A  +G+V   +  
Sbjct: 170 PESKIRFVHKEMGIIPSWGGTTRLVEIIGSRQALKVLSGALKLDSKNALNIGMVEEVLQS 229

Query: 781 NEEGNAAYHRALALAQEILPQ----APIAVRLGKLAIDRGIEVDIASGMAIE 924
           ++E      ++L  AQE L Q     P  +R  K ++  G E+ +   +  E
Sbjct: 230 SDE-----TKSLEEAQEWLKQFIQGPPEVIRALKKSVCSGRELYLEEALQNE 276


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,982,263
Number of extensions: 1411350
Number of successful extensions: 7791
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 7596
Number of HSP's successfully gapped: 30
Length of query: 331
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,901,872
Effective search space: 3397626816
Effective search space used: 3397626816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013275
         (995 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr06                                                         381   e-103
Sscrofa_Chr01                                                         186   2e-44

>Sscrofa_Chr06 
||          Length = 157765593

 Score =  381 bits (192), Expect = e-103
 Identities = 192/192 (100%)
 Strand = Plus / Plus

                                                                             
Query: 653       cagggggcactcagaggctgcctcgatgcctgggcgtggccctggcgaaggagctcatct 712
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146957965 cagggggcactcagaggctgcctcgatgcctgggcgtggccctggcgaaggagctcatct 146958024

                                                                             
Query: 713       tcacaggccgacgactgagtgggatgcaggcccaggctctggggctggtgaaccatgctg 772
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146958025 tcacaggccgacgactgagtgggatgcaggcccaggctctggggctggtgaaccatgctg 146958084

                                                                             
Query: 773       tggcccagaacgaggagggcaacgccgcctaccaccgggctctagcactggcccaggaga 832
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146958085 tggcccagaacgaggagggcaacgccgcctaccaccgggctctagcactggcccaggaga 146958144

                             
Query: 833       tcctgccccagg 844
                 ||||||||||||
Sbjct: 146958145 tcctgccccagg 146958156



 Score =  186 bits (94), Expect = 2e-44
 Identities = 94/94 (100%)
 Strand = Plus / Plus

                                                                             
Query: 328       cagctgctggaagccctggcccagctgcgggaggaccggcacgtgcgcgtcctcatcttc 387
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146951497 cagctgctggaagccctggcccagctgcgggaggaccggcacgtgcgcgtcctcatcttc 146951556

                                                   
Query: 388       agaagtggagtgaagggtgtattctgcgcaggtg 421
                 ||||||||||||||||||||||||||||||||||
Sbjct: 146951557 agaagtggagtgaagggtgtattctgcgcaggtg 146951590



 Score =  186 bits (94), Expect = 2e-44
 Identities = 94/94 (100%)
 Strand = Plus / Plus

                                                                             
Query: 505       gcagccttccctgcgcccaccatcgcagctatggatgggtttgccttgggcggaggcctg 564
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146955560 gcagccttccctgcgcccaccatcgcagctatggatgggtttgccttgggcggaggcctg 146955619

                                                   
Query: 565       gaacttgccctggcctgtgacctccgagtggcag 598
                 ||||||||||||||||||||||||||||||||||
Sbjct: 146955620 gaacttgccctggcctgtgacctccgagtggcag 146955653



 Score =  180 bits (91), Expect = 1e-42
 Identities = 91/91 (100%)
 Strand = Plus / Plus

                                                                             
Query: 415       gcaggtgcagacctgaaggagcgggagcagatgagtgaggcggaggtgggggtctttgtc 474
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146954499 gcaggtgcagacctgaaggagcgggagcagatgagtgaggcggaggtgggggtctttgtc 146954558

                                                
Query: 475       cagcggctccgaggcctgatgaatgagattg 505
                 |||||||||||||||||||||||||||||||
Sbjct: 146954559 cagcggctccgaggcctgatgaatgagattg 146954589



 Score =  139 bits (70), Expect = 3e-30
 Identities = 70/70 (100%)
 Strand = Plus / Plus

                                                                             
Query: 261       aggaatcactgagattctgatgaacagaccgagcgcccgaaatgccctggggaatgtctt 320
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146951361 aggaatcactgagattctgatgaacagaccgagcgcccgaaatgccctggggaatgtctt 146951420

                           
Query: 321       tgtcagccag 330
                 ||||||||||
Sbjct: 146951421 tgtcagccag 146951430



 Score =  123 bits (62), Expect = 2e-25
 Identities = 62/62 (100%)
 Strand = Plus / Plus

                                                                             
Query: 595       gcagcttcctcggctgtcatggggctgatcgagaccacccgagggctcctcccgggagca 654
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146957704 gcagcttcctcggctgtcatggggctgatcgagaccacccgagggctcctcccgggagca 146957763

                   
Query: 655       gg 656
                 ||
Sbjct: 146957764 gg 146957765



 Score =  111 bits (56), Expect = 7e-22
 Identities = 56/56 (100%)
 Strand = Plus / Plus

                                                                         
Query: 842       aggctcccattgctgtgcggctgggcaaactagctattgaccgaggaatagaggtg 897
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146963388 aggctcccattgctgtgcggctgggcaaactagctattgaccgaggaatagaggtg 146963443



 Score =  111 bits (56), Expect = 7e-22
 Identities = 56/56 (100%)
 Strand = Plus / Plus

                                                                         
Query: 940       cagaacatcccgacccgagatcgcctggaaggcatggcagccttcagggagaagcg 995
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146965962 cagaacatcccgacccgagatcgcctggaaggcatggcagccttcagggagaagcg 146966017



 Score = 99.6 bits (50), Expect = 3e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                                   
Query: 893       aggtggacattgcatcagggatggccattgaagggatatgctatgcccag 942
                 ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146964845 aggtggacattgcatcagggatggccattgaagggatatgctatgcccag 146964894


>Sscrofa_Chr01 
||          Length = 315321322

 Score =  186 bits (94), Expect = 2e-44
 Identities = 94/94 (100%)
 Strand = Plus / Plus

                                                                            
Query: 505      gcagccttccctgcgcccaccatcgcagctatggatgggtttgccttgggcggaggcctg 564
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68678637 gcagccttccctgcgcccaccatcgcagctatggatgggtttgccttgggcggaggcctg 68678696

                                                  
Query: 565      gaacttgccctggcctgtgacctccgagtggcag 598
                ||||||||||||||||||||||||||||||||||
Sbjct: 68678697 gaacttgccctggcctgtgacctccgagtggcag 68678730



 Score =  180 bits (91), Expect = 1e-42
 Identities = 91/91 (100%)
 Strand = Plus / Plus

                                                                            
Query: 415      gcaggtgcagacctgaaggagcgggagcagatgagtgaggcggaggtgggggtctttgtc 474
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68677576 gcaggtgcagacctgaaggagcgggagcagatgagtgaggcggaggtgggggtctttgtc 68677635

                                               
Query: 475      cagcggctccgaggcctgatgaatgagattg 505
                |||||||||||||||||||||||||||||||
Sbjct: 68677636 cagcggctccgaggcctgatgaatgagattg 68677666


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,603,453
Number of extensions: 168
Number of successful extensions: 168
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 11
Length of query: 995
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 974
Effective length of database: 2,808,413,156
Effective search space: 2735394413944
Effective search space used: 2735394413944
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)