Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013275
(995 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533549.2| PREDICTED: similar to Methylglutaconyl-CoA hydr... 278 6e-75
Alignment gi|XP_853370.1| PREDICTED: similar to enoyl Coenzyme A hydratas... 242 5e-64
Alignment gi|XP_537945.2| PREDICTED: similar to Enoyl-CoA hydratase, mito... 114 1e-25
Alignment gi|XP_533678.1| PREDICTED: similar to peroxisomal enoyl-coenzym... 85 9e-17
Alignment gi|XP_859489.1| PREDICTED: similar to hydroxyacyl dehydrogenase... 82 8e-16
Alignment gi|XP_532894.1| PREDICTED: similar to hydroxyacyl dehydrogenase... 82 8e-16
Alignment gi|XP_545234.1| PREDICTED: similar to enoyl-Coenzyme A, hydrata... 79 7e-15
Alignment gi|XP_544259.2| PREDICTED: similar to enoyl Coenzyme A hydratas... 74 3e-13
Alignment gi|XP_851564.1| PREDICTED: similar to enoyl Coenzyme A hydratas... 70 2e-12
Alignment gi|XP_867316.1| PREDICTED: similar to peroxisomal enoyl-coenzym... 70 3e-12
>ref|XP_533549.2| PREDICTED: similar to Methylglutaconyl-CoA hydratase, mitochondrial
precursor (AU-specific RNA-binding enoyl-CoA hydratase)
(AU-binding protein/enoyl-CoA hydratase) [Canis
familiaris].
Length = 340
Score = 278 bits (711), Expect = 6e-75
Identities = 140/264 (53%), Positives = 191/264 (72%)
Frame = +1
Query: 202 SSPVDAGREIQVRALEGLDQGITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVL 381
SS V E++VR LE ++GI + +NR A+N V L +A+ L+ D+ VR +
Sbjct: 69 SSEVKTEDELRVRYLEEENRGIVVLGINRAYAKNTFSKSLVKMLSKAVDALKSDKKVRTI 128
Query: 382 IFRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLRGLMNEIAAFPAPTIAAMDXXXXXXX 561
I RS V G+FCAGADLKER +M+ +EVG FV ++R +++EIA P PTIAA+D
Sbjct: 129 IVRSEVPGIFCAGADLKERVKMNPSEVGPFVSKIRAVIDEIANLPVPTIAAIDGLALGGG 188
Query: 562 XXXXXXCDLRVAASSAVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQ 741
CD+RVAASSA MGL+ET ++PG GGTQRLPR +G++LAKELIF+ R L G +
Sbjct: 189 LELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGQE 248
Query: 742 AQALGLVNHAVAQNEEGNAAYHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAI 921
A+A+GL++H + QN+EG+AAY +AL LA+E LPQ P+AVR+ KLAI++G+EVD+ +G+AI
Sbjct: 249 AKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAVRVAKLAINQGMEVDLVTGLAI 308
Query: 922 EGICYAQNIPTRDRLEGMAAFREK 993
E CYAQ IPT+DRLEG+ AF+EK
Sbjct: 309 EEACYAQTIPTKDRLEGLLAFKEK 332
>ref|XP_853370.1| PREDICTED: similar to enoyl Coenzyme A hydratase domain containing
2 [Canis familiaris].
Length = 147
Score = 242 bits (617), Expect = 5e-64
Identities = 126/147 (85%), Positives = 131/147 (89%)
Frame = +1
Query: 280 MNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMSEAE 459
MNRPSA NALGNV V+QLLEALAQLRED+ VRVL+FRSGVKGVFCAGADLKEREQMSEAE
Sbjct: 1 MNRPSACNALGNVLVNQLLEALAQLREDQQVRVLLFRSGVKGVFCAGADLKEREQMSEAE 60
Query: 460 VGVFVQRLRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRG 639
VG+FVQRLRGLMNEIAAFPAPTIAAMD CDLRVAASSAVMGLIETTRG
Sbjct: 61 VGIFVQRLRGLMNEIAAFPAPTIAAMDGFALGGGLELALACDLRVAASSAVMGLIETTRG 120
Query: 640 LLPGAGGTQRLPRCLGVALAKELIFTG 720
LLPGAGGTQRLPRC+GVALAKELIFTG
Sbjct: 121 LLPGAGGTQRLPRCIGVALAKELIFTG 147
>ref|XP_537945.2| PREDICTED: similar to Enoyl-CoA hydratase, mitochondrial precursor
(Short chain enoyl-CoA hydratase) (SCEH) (Enoyl-CoA
hydratase 1) [Canis familiaris].
Length = 575
Score = 114 bits (286), Expect = 1e-25
Identities = 75/249 (30%), Positives = 117/249 (46%)
Frame = +1
Query: 247 EGLDQGITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGAD 426
+G + + I +NRP A NAL N + +L +AL +D V ++ G K F AGAD
Sbjct: 326 KGKNSNVGLIQLNRPKALNALCNGLMMELNQALEAFEKDPAVGAIVLTGGEKA-FAAGAD 384
Query: 427 LKEREQMSEAEVGVFVQRLRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASS 606
+KE + + + + + +++A P IAA++ CD+ A
Sbjct: 385 IKEMQNQTFQDC--YSSKFLSHWDQLAQVKKPVIAAVNGYALGGGCELAMMCDIIYAGEK 442
Query: 607 AVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNE 786
A E G +PGAGGTQRL R +G +LA E++ TG R+S A+ GLV+
Sbjct: 443 AQFAQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPV-- 500
Query: 787 EGNAAYHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRL 966
A+ A++I + I + K +++ E+ + G +E + T DR
Sbjct: 501 --ETLVEEAIRCAEKIASNSKIVTAMAKESVNAAFEMTLTEGNRLEKKLFYATFATEDRK 558
Query: 967 EGMAAFREK 993
EGM AF EK
Sbjct: 559 EGMTAFVEK 567
>ref|XP_533678.1| PREDICTED: similar to peroxisomal enoyl-coenzyme A hydratase-like
protein isoform 1 [Canis familiaris].
Length = 328
Score = 85.1 bits (209), Expect = 9e-17
Identities = 77/290 (26%), Positives = 119/290 (41%), Gaps = 16/290 (5%)
Frame = +1
Query: 172 RPLEKT---RGCASSPVDA-GREIQVRALEGLDQGITEILMNRPSARNALGNVFVSQLLE 339
RPL ++P +A G + + + I + +NRP RNA+ F +++E
Sbjct: 32 RPLSSAAQDEASTAAPREAPGHSYESLRVTAAQKHILHVQLNRPEKRNAMNKAFWREMVE 91
Query: 340 ALAQLREDRHVRVLIFRSGVKGVFCAGADLKERE----QMSEAEVGVFVQRLRGLMNE-- 501
++ +D R ++ SG VF AG DL + Q +V LR L+
Sbjct: 92 CFNKIAQDPDCRAVVI-SGAGKVFTAGIDLMDMASEILQPQGDDVARISWNLRNLITRYQ 150
Query: 502 -----IAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLLPGAGGTQ 666
I P P IAA+ CD+R A A + E GL G Q
Sbjct: 151 ETFSVIEKCPKPVIAAIHGACIGAGVDLITACDIRYCAQDAFFQVKEVDIGLAADVGTLQ 210
Query: 667 RLPRCLG-VALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQEILPQ 843
RLP+ +G +L EL FT R + +A A GLV+ E A LA EI +
Sbjct: 211 RLPKIIGNQSLVNELAFTCRTMMADEALASGLVSRVFPDKE---GMLDAAFTLAAEISTK 267
Query: 844 APIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK 993
+P+AV+ K+ + + G+ + T+D ++ + A EK
Sbjct: 268 SPVAVQSTKINLIYSRNHPVTEGLNYMATWNMSMLQTQDIIKSVQAAMEK 317
>ref|XP_859489.1| PREDICTED: similar to hydroxyacyl dehydrogenase, subunit A isoform
3 [Canis familiaris].
Length = 761
Score = 82.0 bits (201), Expect = 8e-16
Identities = 62/239 (25%), Positives = 106/239 (44%), Gaps = 5/239 (2%)
Frame = +1
Query: 250 GLDQGITEILMNRPSAR-NALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGAD 426
G+ + + +N P+++ N L S+ +E + ++ +R + S G F AGAD
Sbjct: 44 GVKGDVAVVRLNSPNSKVNTLNKELQSEFMEVMNEIWASDQIRSAVLISTKPGCFIAGAD 103
Query: 427 LKEREQM-SEAEVGVFVQRLRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAAS 603
+ + EV Q + + ++ P +AA+ C R+A
Sbjct: 104 INMLASCKTHEEVTRISQEGQRMFEKLEKSTKPIVAAISGACLGGGLELAISCQYRIATK 163
Query: 604 S--AVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVA 777
V+G E G+LPGAGGTQRLP+ +G+ A +++ TGR + +A+ +GLV+ V
Sbjct: 164 DRKTVLGAPEVLLGILPGAGGTQRLPKMVGLPAAFDMMLTGRNIRADRAKRMGLVDQLVE 223
Query: 778 QNEEG-NAAYHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIP 951
G R + +E +AV K D+ I + G+ + YA +IP
Sbjct: 224 PLGPGLKPPEERTIEYLEE------VAVNFAKGLSDKKISIKRDKGLVEKLTSYALSIP 276
>ref|XP_532894.1| PREDICTED: similar to hydroxyacyl dehydrogenase, subunit A isoform
2 [Canis familiaris].
Length = 762
Score = 82.0 bits (201), Expect = 8e-16
Identities = 62/239 (25%), Positives = 106/239 (44%), Gaps = 5/239 (2%)
Frame = +1
Query: 250 GLDQGITEILMNRPSAR-NALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGAD 426
G+ + + +N P+++ N L S+ +E + ++ +R + S G F AGAD
Sbjct: 44 GVKGDVAVVRLNSPNSKVNTLNKELQSEFMEVMNEIWASDQIRSAVLISTKPGCFIAGAD 103
Query: 427 LKEREQM-SEAEVGVFVQRLRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAAS 603
+ + EV Q + + ++ P +AA+ C R+A
Sbjct: 104 INMLASCKTHEEVTRISQEGQRMFEKLEKSTKPIVAAISGACLGGGLELAISCQYRIATK 163
Query: 604 S--AVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVA 777
V+G E G+LPGAGGTQRLP+ +G+ A +++ TGR + +A+ +GLV+ V
Sbjct: 164 DRKTVLGAPEVLLGILPGAGGTQRLPKMVGLPAAFDMMLTGRNIRADRAKRMGLVDQLVE 223
Query: 778 QNEEG-NAAYHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIP 951
G R + +E +AV K D+ I + G+ + YA +IP
Sbjct: 224 PLGPGLKPPEERTIEYLEE------VAVNFAKGLSDKKISIKRDKGLVEKLTSYALSIP 276
>ref|XP_545234.1| PREDICTED: similar to enoyl-Coenzyme A, hydratase/3-hydroxyacyl
Coenzyme A dehydrogenase [Canis familiaris].
Length = 723
Score = 79.0 bits (193), Expect = 7e-15
Identities = 59/188 (31%), Positives = 89/188 (47%)
Frame = +1
Query: 301 NALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMSEAEVGVFVQR 480
NA+ + + + L + DR V+ ++ G G F AGAD+ E FV
Sbjct: 22 NAISTAVLRGIKDGLQKATTDRTVKAIVL-CGADGKFSAGADI---HSFGEPRKSDFV-- 75
Query: 481 LRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLLPGAGG 660
L +++EI P +AA+ C R+A + A +G E T G+LPGA G
Sbjct: 76 LGHIVDEIQRTEKPVVAAIQGLALGGGLELALGCHYRIAHAEAQIGFPEVTLGILPGARG 135
Query: 661 TQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQEILP 840
TQ LPR +GV A +LI +GR + +A LG+++ V + A+ LAQ I
Sbjct: 136 TQLLPRLIGVPAALDLITSGRHVLADEALKLGILDEIV-----NSDPVEEAIKLAQRISD 190
Query: 841 QAPIAVRL 864
Q+ + RL
Sbjct: 191 QSLESRRL 198
>ref|XP_544259.2| PREDICTED: similar to enoyl Coenzyme A hydratase domain containing
3 [Canis familiaris].
Length = 261
Score = 73.6 bits (179), Expect = 3e-13
Identities = 67/246 (27%), Positives = 105/246 (42%), Gaps = 2/246 (0%)
Frame = +1
Query: 262 GITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKER- 438
GI I+++ P RNAL + L L E + +RV+I S VF +G DLKE
Sbjct: 16 GIRNIVLSDPKKRNALSLAMLKSLQTDLLHESESKDLRVIII-SAEGPVFSSGHDLKELT 74
Query: 439 -EQMSEAEVGVFVQRLRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVM 615
E+ + VF Q +M I P P IA ++ CD+ VA+ +
Sbjct: 75 DERSPDYHAEVF-QTCSEVMMLIQNHPVPIIAMVNGLATAAGCQLVASCDIAVASDKSSF 133
Query: 616 GLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGN 795
GL G L R + +A E++FTG +S +A GL++ V +
Sbjct: 134 ATPGVNIGLFCSTPGVA-LGRAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPAEQ--- 189
Query: 796 AAYHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGM 975
+ +A++I + V LGK A R + D+ + + N+ +D EG+
Sbjct: 190 -LEEETMRIARKIASLSRRVVSLGKAAFYRQLPQDLRTAYHLTSQTMVDNVALQDGQEGI 248
Query: 976 AAFREK 993
AF +K
Sbjct: 249 KAFIQK 254
>ref|XP_851564.1| PREDICTED: similar to enoyl Coenzyme A hydratase domain containing
1 isoform 1 [Canis familiaris].
Length = 307
Score = 70.5 bits (171), Expect = 2e-12
Identities = 53/228 (23%), Positives = 97/228 (42%), Gaps = 1/228 (0%)
Frame = +1
Query: 244 LEGLDQGITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGA 423
L+ D GI + +N PS NA V + QLLE + +L + LI R G K F +G+
Sbjct: 57 LQKEDSGIGILTLNNPSKMNAFSGVMMLQLLEKVIELENWTEGKGLIVR-GAKNTFSSGS 115
Query: 424 DLKEREQMSEAEVGV-FVQRLRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAA 600
DL + ++ E G+ ++ + + P ++A + CD R+
Sbjct: 116 DLNAVKALATPEDGMALCMFMQNTLTRLMRLPLISVALIQGRALGGGAEVTTACDFRLMT 175
Query: 601 SSAVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQ 780
+ + + G++P GG RL LG A +++ L +A +LG+V +
Sbjct: 176 ADGEIRFVHREMGIVPSWGGGTRLVELLGARQALKVLSGALPLDAARALSLGMVEEVLRA 235
Query: 781 NEEGNAAYHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIE 924
++E + A A + P +R K ++ E+ + + +E
Sbjct: 236 SDEA-SCLQEARAWLGQFTQGPPQVIRALKRSVSSSRELCLEEALQME 282
>ref|XP_867316.1| PREDICTED: similar to peroxisomal enoyl-coenzyme A hydratase-like
protein isoform 2 [Canis familiaris].
Length = 248
Score = 70.1 bits (170), Expect = 3e-12
Identities = 64/241 (26%), Positives = 98/241 (40%), Gaps = 12/241 (4%)
Frame = +1
Query: 307 LGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKERE----QMSEAEVGVFV 474
+ F +++E ++ +D R ++ SG VF AG DL + Q +V
Sbjct: 1 MNKAFWREMVECFNKIAQDPDCRAVVI-SGAGKVFTAGIDLMDMASEILQPQGDDVARIS 59
Query: 475 QRLRGLMNE-------IAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETT 633
LR L+ I P P IAA+ CD+R A A + E
Sbjct: 60 WNLRNLITRYQETFSVIEKCPKPVIAAIHGACIGAGVDLITACDIRYCAQDAFFQVKEVD 119
Query: 634 RGLLPGAGGTQRLPRCLG-VALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHR 810
GL G QRLP+ +G +L EL FT R + +A A GLV+ E
Sbjct: 120 IGLAADVGTLQRLPKIIGNQSLVNELAFTCRTMMADEALASGLVSRVFPDKE---GMLDA 176
Query: 811 ALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFRE 990
A LA EI ++P+AV+ K+ + + G+ + T+D ++ + A E
Sbjct: 177 AFTLAAEISTKSPVAVQSTKINLIYSRNHPVTEGLNYMATWNMSMLQTQDIIKSVQAAME 236
Query: 991 K 993
K
Sbjct: 237 K 237
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,122,297
Number of extensions: 1464764
Number of successful extensions: 9030
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 8786
Number of HSP's successfully gapped: 17
Length of query: 331
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 228
Effective length of database: 15,440,896
Effective search space: 3520524288
Effective search space used: 3520524288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013275
(995 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033625.1| enoyl-CoA hydratase domain-containing protei... 474 e-134
Alignment gi|XP_002694023.1| PREDICTED: AU RNA binding protein/enoyl-Coen... 189 3e-48
Alignment gi|NP_001020377.2| enoyl-CoA hydratase, mitochondrial precursor... 130 2e-30
Alignment gi|NP_001069248.2| peroxisomal bifunctional enzyme [Bos taurus]. 89 5e-18
Alignment gi|NP_776760.1| trifunctional enzyme subunit alpha, mitochondri... 78 1e-14
Alignment gi|XP_002695024.1| PREDICTED: enoyl Coenzyme A hydratase 1, per... 75 7e-14
Alignment gi|XP_002701918.1| PREDICTED: enoyl Coenzyme A hydratase 1, per... 75 7e-14
Alignment gi|NP_001180085.1| enoyl-CoA hydratase domain-containing protei... 72 6e-13
Alignment gi|XP_002692097.1| PREDICTED: enoyl Coenzyme A hydratase domain... 72 6e-13
Alignment gi|NP_001030492.1| enoyl-CoA hydratase domain-containing protei... 66 5e-11
>ref|NP_001033625.1| enoyl-CoA hydratase domain-containing protein 2, mitochondrial
precursor [Bos taurus].
Length = 296
Score = 474 bits (1220), Expect = e-134
Identities = 253/289 (87%), Positives = 259/289 (89%)
Frame = +1
Query: 127 MLRTLASALRPPRRWRPLEKTRGCASSPVDAGREIQVRALEGLDQGITEILMNRPSARNA 306
MLR L S LR PR W+PLE TRGC+S+P AGREIQV AL G +QGI EILMNRPSARNA
Sbjct: 1 MLRVLTSTLRFPRPWKPLE-TRGCSSNPGAAGREIQVCALAGPNQGIAEILMNRPSARNA 59
Query: 307 LGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLR 486
LGNVFVSQLLEALAQLREDR VRVLIFRSGVKGVFCAGADLKEREQMSEAEVG+FVQRLR
Sbjct: 60 LGNVFVSQLLEALAQLREDRQVRVLIFRSGVKGVFCAGADLKEREQMSEAEVGLFVQRLR 119
Query: 487 GLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLLPGAGGTQ 666
GLM EIAAFPAPTIAAMD CDLRVAASSAVMGLIETTRGLLPGAGGTQ
Sbjct: 120 GLMTEIAAFPAPTIAAMDGFALGGGLELALACDLRVAASSAVMGLIETTRGLLPGAGGTQ 179
Query: 667 RLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQEILPQA 846
RLPRCLGVALAKELIFTGRRLSG QAQALGLVNHAVAQNEEGNAAYHRA ALAQEILPQA
Sbjct: 180 RLPRCLGVALAKELIFTGRRLSGAQAQALGLVNHAVAQNEEGNAAYHRARALAQEILPQA 239
Query: 847 PIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK 993
PIAVRL K+AIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK
Sbjct: 240 PIAVRLSKVAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK 288
>ref|XP_002694023.1| PREDICTED: AU RNA binding protein/enoyl-Coenzyme A hydratase-like
[Bos taurus].
Length = 288
Score = 189 bits (480), Expect = 3e-48
Identities = 106/264 (40%), Positives = 153/264 (57%)
Frame = +1
Query: 202 SSPVDAGREIQVRALEGLDQGITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVL 381
S+ V E++V LE ++GI + +NR A+N+L + L A+ L+ D+ VR +
Sbjct: 67 SAEVKTEDELRVWYLEEENRGIVVLGINRAYAKNSLSKNLIKMLSRAVDALKSDKKVRTI 126
Query: 382 IFRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLRGLMNEIAAFPAPTIAAMDXXXXXXX 561
I R+ V G+FCAGADLKER +MS
Sbjct: 127 IVRNEVPGIFCAGADLKERAKMS------------------------------------- 149
Query: 562 XXXXXXCDLRVAASSAVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQ 741
SS V + R ++ GGTQRLPR +G++L KELIF+ R L G +
Sbjct: 150 -------------SSEVGPFVSKIRAMINEIGGTQRLPRAIGMSLGKELIFSARVLDGQE 196
Query: 742 AQALGLVNHAVAQNEEGNAAYHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAI 921
A+++GL++H + QN+EG+AAY +AL LA+E LPQ P+A+ + KLAI++G+EVD+ +G+AI
Sbjct: 197 AKSVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMTVAKLAINQGMEVDLVTGLAI 256
Query: 922 EGICYAQNIPTRDRLEGMAAFREK 993
E CYAQ IPT+DRLEG+ AF+EK
Sbjct: 257 EEACYAQTIPTKDRLEGLLAFKEK 280
>ref|NP_001020377.2| enoyl-CoA hydratase, mitochondrial precursor [Bos taurus].
Length = 290
Score = 130 bits (327), Expect = 2e-30
Identities = 95/291 (32%), Positives = 138/291 (47%), Gaps = 3/291 (1%)
Frame = +1
Query: 130 LRTLASALRPPRR-WRPLEKTRGCASSPVDAGREIQVRALEGLDQGITEILMNRPSARNA 306
LR L +R P R W R ASS A E + A +G + + I +NRP A NA
Sbjct: 4 LRALLPRVRAPLRPWLFCPVQRSFASS---AAFEYIITAKKGRNSNVGLIQLNRPKALNA 60
Query: 307 LGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMS--EAEVGVFVQR 480
L N + +L +AL ED V ++ G K VF AGAD+KE + ++ G F+
Sbjct: 61 LCNGLIVELNQALQAFEEDPAVGAIVLTGGEK-VFAAGADIKEMQSLTFQNCYSGGFLSH 119
Query: 481 LRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLLPGAGG 660
+++ P IAA++ CD+ A A G E G +PGAGG
Sbjct: 120 ----WDQLTRVKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILIGTIPGAGG 175
Query: 661 TQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQEILP 840
TQRL R +G +LA E++ TG R+S A+ GLV+ A+ A++I
Sbjct: 176 TQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPV----ETVVEEAIQCAEKIAS 231
Query: 841 QAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK 993
+ I + K +++ E+ +A G+ +E + T DR EGMAAF EK
Sbjct: 232 NSKIVTAMAKESVNAAFEMTLAEGVKLEKKLFYSTFATEDRKEGMAAFVEK 282
>ref|NP_001069248.2| peroxisomal bifunctional enzyme [Bos taurus].
Length = 723
Score = 89.4 bits (220), Expect = 5e-18
Identities = 57/193 (29%), Positives = 96/193 (49%)
Frame = +1
Query: 301 NALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMSEAEVGVFVQR 480
NA+ + E+L + D V+ ++ G G+FCAGAD++E + ++ +
Sbjct: 22 NAISTTVARGIKESLQKAITDDTVKAIVI-CGADGIFCAGADIREFKVHKTFDI-----Q 75
Query: 481 LRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLLPGAGG 660
L +++EI P +AA+ C R+A + A +G E T G+LPGA G
Sbjct: 76 LGDIVDEIQRNKKPVVAAIQKLALGGGLELALGCHYRIAHAEAQVGFPEVTLGILPGARG 135
Query: 661 TQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQEILP 840
TQ LPR +GV A +LI +GR +S +A LG+++ V + ++ AQ I
Sbjct: 136 TQLLPRLVGVPAALDLIISGRHISANEALKLGIIDKIV-----NSDPIEESIKFAQRISD 190
Query: 841 QAPIAVRLGKLAI 879
Q+P + R+ + +
Sbjct: 191 QSPESRRICNMPV 203
>ref|NP_776760.1| trifunctional enzyme subunit alpha, mitochondrial [Bos taurus].
Length = 773
Score = 77.8 bits (190), Expect = 1e-14
Identities = 62/239 (25%), Positives = 105/239 (43%), Gaps = 5/239 (2%)
Frame = +1
Query: 250 GLDQGITEILMNRPSAR-NALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGAD 426
G+ + I +N P+++ N L S+ +E + ++ +R + S G F AGAD
Sbjct: 54 GVRGDVAVIRINSPNSKVNTLSQELHSEFMEVMNEVWSSSQIRSAVLISTKPGCFIAGAD 113
Query: 427 LKEREQMSEA-EVGVFVQRLRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAAS 603
L + + EV Q + + ++ P +AA++ C R+A
Sbjct: 114 LNMLNSCTTSQEVTQISQEAQKMFEKLEKSTKPVVAAINGSCLGGGLELAISCQYRIATK 173
Query: 604 S--AVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVA 777
V+G E G+LPGAG TQRLP+ +G A +++ TGR + +A+ +GLV+ V
Sbjct: 174 DKKTVLGSPEVLLGILPGAGATQRLPKMVGRPAAFDMMLTGRGIRADRAKKMGLVDQLVE 233
Query: 778 QNEEG-NAAYHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIP 951
G R + +E +A+ K D+ I G+ + YA +IP
Sbjct: 234 PLGPGVKPPEERTIEYLEE------VAITFAKGLADKKITPKRDKGLVEKLTSYALSIP 286
>ref|XP_002695024.1| PREDICTED: enoyl Coenzyme A hydratase 1, peroxisomal isoform 1 [Bos
taurus].
Length = 326
Score = 75.5 bits (184), Expect = 7e-14
Identities = 69/294 (23%), Positives = 122/294 (41%), Gaps = 13/294 (4%)
Frame = +1
Query: 151 LRPPRRWRPLEKTRGCASSPVDA-GREIQVRALEGLDQGITEILMNRPSARNALGNVFVS 327
LRP + E ++ +SP +A G + + + + + +NRP RNA+ F
Sbjct: 29 LRPMSAFTQEEASK---ASPEEAPGHSYESLRVTAAQKHVLHVQLNRPEKRNAMNKAFWR 85
Query: 328 QLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMSEAEVG-----------VFV 474
+++ ++ ED RV++ SG +F +G DL + G +
Sbjct: 86 EMVVCFNKIAEDSDCRVVVI-SGAGKMFSSGIDLMDMASDLLQPAGDDSARISWHLHSLL 144
Query: 475 QRLRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLLPGA 654
R + + I P P IAA+ CD+R + + + E GL
Sbjct: 145 TRYQETFSVIEKCPKPVIAAIHGGCIGGGVDLITACDIRYSTRDSFFQVKEVDVGLAADV 204
Query: 655 GGTQRLPRCLG-VALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQE 831
G QRLP+ +G +L EL +T R++ +A GLV+ E + A LA E
Sbjct: 205 GTLQRLPKVIGNQSLVNELAYTARKMMADEALESGLVSRLFPDKE---SMLDAAFTLAAE 261
Query: 832 ILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK 993
I ++P+AV+ K+ + + + + + T+D ++ + A EK
Sbjct: 262 ISSKSPVAVQSTKINLIYSRDHSVMESLNYMKSWNMSMLQTKDIMKSVQAAIEK 315
>ref|XP_002701918.1| PREDICTED: enoyl Coenzyme A hydratase 1, peroxisomal isoform 1 [Bos
taurus].
Length = 326
Score = 75.5 bits (184), Expect = 7e-14
Identities = 69/294 (23%), Positives = 122/294 (41%), Gaps = 13/294 (4%)
Frame = +1
Query: 151 LRPPRRWRPLEKTRGCASSPVDA-GREIQVRALEGLDQGITEILMNRPSARNALGNVFVS 327
LRP + E ++ +SP +A G + + + + + +NRP RNA+ F
Sbjct: 29 LRPMSAFTQEEASK---ASPEEAPGHSYESLRVTAAQKHVLHVQLNRPEKRNAMNKAFWR 85
Query: 328 QLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMSEAEVG-----------VFV 474
+++ ++ ED RV++ SG +F +G DL + G +
Sbjct: 86 EMVVCFNKIAEDSDCRVVVI-SGAGKMFSSGIDLMDMASDLLQPAGDDSARISWHLHSLL 144
Query: 475 QRLRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLLPGA 654
R + + I P P IAA+ CD+R + + + E GL
Sbjct: 145 TRYQETFSVIEKCPKPVIAAIHGGCIGGGVDLITACDIRYSTRDSFFQVKEVDVGLAADV 204
Query: 655 GGTQRLPRCLG-VALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQE 831
G QRLP+ +G +L EL +T R++ +A GLV+ E + A LA E
Sbjct: 205 GTLQRLPKVIGNQSLVNELAYTARKMMADEALESGLVSRLFPDKE---SMLDAAFTLAAE 261
Query: 832 ILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK 993
I ++P+AV+ K+ + + + + + T+D ++ + A EK
Sbjct: 262 ISSKSPVAVQSTKINLIYSRDHSVMESLNYMKSWNMSMLQTKDIMKSVQAAIEK 315
>ref|NP_001180085.1| enoyl-CoA hydratase domain-containing protein 3, mitochondrial [Bos
taurus].
Length = 300
Score = 72.4 bits (176), Expect = 6e-13
Identities = 73/279 (26%), Positives = 116/279 (41%), Gaps = 4/279 (1%)
Frame = +1
Query: 169 WRPLEKTRGCASSPVDAGR-EIQVRALEGLDQ-GITEILMNRPSARNALGNVFVSQLLEA 342
W PL T C+ P GR E R Q GI I+++ P RNAL + L
Sbjct: 23 WAPLT-TGFCSGGPAGIGRPEPGPRPTIARQQDGIRSIVLSDPKRRNALSLAMLKSLQSD 81
Query: 343 LAQLREDRHVRVLIFRSGVKGVFCAGADLKER--EQMSEAEVGVFVQRLRGLMNEIAAFP 516
+ E + ++V+I S VF +G DLKE EQ + VF Q +M I P
Sbjct: 82 ILHEAESQDLKVIII-SAEGPVFSSGHDLKELTDEQGPDYHAEVF-QTCSEVMMLIQNHP 139
Query: 517 APTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLLPGAGGTQRLPRCLGVAL 696
P IA ++ CD+ VA+ + + G+ L R + +
Sbjct: 140 VPIIAMVNGLATAAGCQLVASCDIAVASDKSSFAMPGVNIGVFCSTPAVA-LGRAVPRKV 198
Query: 697 AKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQEILPQAPIAVRLGKLA 876
A E++FTG +S +A GL++ V + + +A+++ + + LGK A
Sbjct: 199 ALEMLFTGEPISAQEALLHGLLSRVVPEER----LEEETMRIARKVASLSRSVLSLGKAA 254
Query: 877 IDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK 993
R + D+ + + N+ D EG+ AF +K
Sbjct: 255 FYRQLAQDLRTAYHLTSQTMVDNLGLPDGQEGVKAFLQK 293
>ref|XP_002692097.1| PREDICTED: enoyl Coenzyme A hydratase domain containing 3-like [Bos
taurus].
Length = 300
Score = 72.4 bits (176), Expect = 6e-13
Identities = 73/279 (26%), Positives = 116/279 (41%), Gaps = 4/279 (1%)
Frame = +1
Query: 169 WRPLEKTRGCASSPVDAGR-EIQVRALEGLDQ-GITEILMNRPSARNALGNVFVSQLLEA 342
W PL T C+ P GR E R Q GI I+++ P RNAL + L
Sbjct: 23 WAPLT-TGFCSGGPAGIGRPEPGPRPTIARQQDGIRSIVLSDPKRRNALSLAMLKSLQSD 81
Query: 343 LAQLREDRHVRVLIFRSGVKGVFCAGADLKER--EQMSEAEVGVFVQRLRGLMNEIAAFP 516
+ E + ++V+I S VF +G DLKE EQ + VF Q +M I P
Sbjct: 82 ILHEAESQDLKVIII-SAEGPVFSSGHDLKELTDEQGPDYHAEVF-QTCSEVMMLIQNHP 139
Query: 517 APTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLLPGAGGTQRLPRCLGVAL 696
P IA ++ CD+ VA+ + + G+ L R + +
Sbjct: 140 VPIIAMVNGLATAAGCQLVASCDIAVASDKSSFAMPGVNIGVFCSTPAVA-LGRAVPRKV 198
Query: 697 AKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQEILPQAPIAVRLGKLA 876
A E++FTG +S +A GL++ V + + +A+++ + + LGK A
Sbjct: 199 ALEMLFTGEPISAQEALLHGLLSRVVPEER----LEEETMRIARKVASLSRSVLSLGKAA 254
Query: 877 IDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK 993
R + D+ + + N+ D EG+ AF +K
Sbjct: 255 FYRQLAQDLRTAYHLTSQTMVDNLGLPDGQEGVKAFLQK 293
>ref|NP_001030492.1| enoyl-CoA hydratase domain-containing protein 1 [Bos taurus].
Length = 306
Score = 65.9 bits (159), Expect = 5e-11
Identities = 49/213 (23%), Positives = 92/213 (43%), Gaps = 1/213 (0%)
Frame = +1
Query: 244 LEGLDQGITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGA 423
L+ + GI + +N PS NA V + QLLE + +L + LI R G K F +G+
Sbjct: 56 LQKENSGIGILTLNNPSKMNAFSGVMMLQLLEKVIELENWTEGKGLIIR-GAKNTFSSGS 114
Query: 424 DLKEREQMSEAEVGVFV-QRLRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAA 600
DL + + E G+ V ++ + P ++A + CD R+
Sbjct: 115 DLNAVKALGTPEDGMAVCMFMQNTLTRFMRLPLISVALVQGRALGGGAEVTTACDFRLMT 174
Query: 601 SSAVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQ 780
+ + + + G++P GG RL +G A +++ +L +A +G+V+ +
Sbjct: 175 TQSEIRFVHKEMGIIPSWGGATRLVEIIGGRQALKVLSGALKLDSEKALNIGMVDDILPS 234
Query: 781 NEEGNAAYHRALALAQEILPQAPIAVRLGKLAI 879
++E A Q+ + P +R K ++
Sbjct: 235 SDE-TECLKEAQEWLQQFIKGPPEVIRALKKSV 266
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,284,348
Number of extensions: 1423258
Number of successful extensions: 8410
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 8187
Number of HSP's successfully gapped: 19
Length of query: 331
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,273,310
Effective search space: 3254314680
Effective search space used: 3254314680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013275
(995 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003128050.2| PREDICTED: enoyl-CoA hydratase domain-contai... 439 e-124
Alignment gi|XP_001928827.3| PREDICTED: methylglutaconyl-CoA hydratase, m... 282 2e-76
Alignment gi|NP_001177104.1| enoyl-CoA hydratase, mitochondrial [Sus scro... 121 5e-28
Alignment gi|XP_003362049.1| PREDICTED: enoyl-CoA hydratase, mitochondria... 97 2e-20
Alignment gi|NP_999127.1| trifunctional enzyme subunit alpha, mitochondri... 86 4e-17
Alignment gi|NP_001038072.1| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase,... 85 7e-17
Alignment gi|XP_003358782.1| PREDICTED: peroxisomal bifunctional enzyme [... 82 4e-16
Alignment gi|XP_003130864.2| PREDICTED: hypothetical protein LOC100513945... 78 9e-15
Alignment gi|NP_001106914.1| enoyl-CoA delta isomerase 2, mitochondrial [... 60 2e-09
>ref|XP_003128050.2| PREDICTED: enoyl-CoA hydratase domain-containing protein 2,
mitochondrial-like isoform 1 [Sus scrofa].
Length = 275
Score = 439 bits (1130), Expect = e-124
Identities = 231/244 (94%), Positives = 231/244 (94%)
Frame = +1
Query: 262 GITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKERE 441
GITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKERE
Sbjct: 24 GITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKERE 83
Query: 442 QMSEAEVGVFVQRLRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGL 621
QMSEAEVGVFVQRLRGLMNEIAAFPAPTIAAMD CDLRVAASSAVMGL
Sbjct: 84 QMSEAEVGVFVQRLRGLMNEIAAFPAPTIAAMDGFALGGGLELALACDLRVAASSAVMGL 143
Query: 622 IETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAA 801
IETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAA
Sbjct: 144 IETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAA 203
Query: 802 YHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAA 981
YHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAA
Sbjct: 204 YHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAA 263
Query: 982 FREK 993
FREK
Sbjct: 264 FREK 267
>ref|XP_001928827.3| PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial [Sus
scrofa].
Length = 338
Score = 282 bits (721), Expect = 2e-76
Identities = 149/300 (49%), Positives = 203/300 (67%)
Frame = +1
Query: 94 GAWRHLPDGTPMLRTLASALRPPRRWRPLEKTRGCASSPVDAGREIQVRALEGLDQGITE 273
G+W LP G + + WR RG SS E++VR LE ++GI
Sbjct: 37 GSWTGLPVGPAIWARGWTPAAGGAAWR-----RGY-SSEAKTEDELRVRYLEEENRGIVV 90
Query: 274 ILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMSE 453
+ +NR A+N+L V L +A+ L+ D+ VR +I RS V G+FCAGADLKER +M
Sbjct: 91 LGINRAYAKNSLSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLKERVKMHS 150
Query: 454 AEVGVFVQRLRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETT 633
+EVG FV +LR ++NEIA P PTIAA+D CD+RVAASSA MGL+ET
Sbjct: 151 SEVGPFVSKLRAVINEIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETK 210
Query: 634 RGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRA 813
++PG GGTQRLPR +G++LAKELIF+ R L G +A+A+GL++H + QN+EG+AAY +A
Sbjct: 211 LAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKA 270
Query: 814 LALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK 993
L LA+E LPQ P+A+R+ KLAI++G+EVD+ +G+AIE CYAQ +PT+DRLEG+ AF+EK
Sbjct: 271 LDLAREFLPQGPVAIRVAKLAINQGMEVDLVTGLAIEEACYAQTVPTKDRLEGLLAFKEK 330
>ref|NP_001177104.1| enoyl-CoA hydratase, mitochondrial [Sus scrofa].
Length = 290
Score = 121 bits (304), Expect = 5e-28
Identities = 91/291 (31%), Positives = 132/291 (45%), Gaps = 3/291 (1%)
Frame = +1
Query: 130 LRTLASALRPP-RRWRPLEKTRGCASSPVDAGREIQVRALEGLDQGITEILMNRPSARNA 306
LR L +R P R W R ASS A E V A +G + I +NRP A NA
Sbjct: 4 LRALLPRVRAPLRAWPGCPALRSLASS---AHFEHIVVAKKGKSSNVGLIQLNRPKALNA 60
Query: 307 LGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMS--EAEVGVFVQR 480
L + +L +AL ED V ++ G K F AGAD+KE + + + G F+
Sbjct: 61 LCKGLILELNQALQAFEEDPAVGAIVLTGGEKA-FAAGADIKEMQNQTFQDCYSGGFLSH 119
Query: 481 LRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLLPGAGG 660
+ ++ P IAA++ CD+ A A G E G +PG GG
Sbjct: 120 ----WDHLSRVRKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGTGG 175
Query: 661 TQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQEILP 840
TQRL R +G +L E++ TG R+S +A+ GLV+ A+ A++I
Sbjct: 176 TQRLTRAVGKSLTMEMVLTGDRISAQEAKQAGLVSKIFPV----ETLVEEAIQCAEKIAS 231
Query: 841 QAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK 993
+ I + K +++ E +A G+ +E + T DR EGM AF EK
Sbjct: 232 YSKIVTAMAKESVNAAFETSLAEGLKLEKKLFYSTFATEDRKEGMTAFVEK 282
>ref|XP_003362049.1| PREDICTED: enoyl-CoA hydratase, mitochondrial-like [Sus scrofa].
Length = 341
Score = 96.7 bits (239), Expect = 2e-20
Identities = 71/255 (27%), Positives = 110/255 (43%), Gaps = 2/255 (0%)
Frame = +1
Query: 235 VRALEGLDQGITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFC 414
V A +G + I +NR + +L +AL ED V ++ G K F
Sbjct: 88 VVAKKGKSSNVGLIQLNRXXXXXXXCKGLILELNQALQAFEEDPAVGAIVLTGGEKA-FA 146
Query: 415 AGADLKEREQMS--EAEVGVFVQRLRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDL 588
AGAD+KE + + + G F+ + ++ P IAA++ CD+
Sbjct: 147 AGADIKEMQNQTFQDCYSGGFLSH----WDHLSRVRKPVIAAVNGYALGGGCELAMMCDI 202
Query: 589 RVAASSAVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNH 768
A A G E P GGTQRL R +G +L E++ TG R+S +A+ GLV+
Sbjct: 203 IYAGEKAQFGQPELLSETCPRTGGTQRLTRAVGKSLTMEMVLTGDRISAQEAKQAGLVSK 262
Query: 769 AVAQNEEGNAAYHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNI 948
A+ A++I + I + K +++ E +A G+ +E +
Sbjct: 263 IFPV----ETLVEEAIQCAEKIASYSKIVTAMAKESVNAAFETSLAEGLKLEKKLFYSTF 318
Query: 949 PTRDRLEGMAAFREK 993
T DR EGM AF EK
Sbjct: 319 ATEDRKEGMTAFVEK 333
>ref|NP_999127.1| trifunctional enzyme subunit alpha, mitochondrial [Sus scrofa].
Length = 763
Score = 85.5 bits (210), Expect = 4e-17
Identities = 65/239 (27%), Positives = 107/239 (44%), Gaps = 5/239 (2%)
Frame = +1
Query: 250 GLDQGITEILMNRPSAR-NALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGAD 426
G+ + I +N P+++ N LG S+ +E + ++ +R + S G F AGAD
Sbjct: 44 GVKGDVAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGAD 103
Query: 427 LKEREQMSEA-EVGVFVQRLRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAAS 603
+ + + EV Q + ++ P +AA++ C R+A
Sbjct: 104 INMLSACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATK 163
Query: 604 S--AVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVA 777
V+G E G+LPGAGGTQRLP+ +GV A +++ TGR + +A+ +GLV+ V
Sbjct: 164 DKKTVLGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLVE 223
Query: 778 QNEEG-NAAYHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIP 951
G R + +E +AV K D+ I G+ + YA +IP
Sbjct: 224 PLGPGLKPPEERTIEYLEE------VAVTFAKGLADKKISPKRDKGLVEKLTSYAMSIP 276
>ref|NP_001038072.1| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [Sus
scrofa].
Length = 322
Score = 84.7 bits (208), Expect = 7e-17
Identities = 77/298 (25%), Positives = 130/298 (43%), Gaps = 13/298 (4%)
Frame = +1
Query: 139 LASALRPPRRWRPLEKTRGCAS-SPVDAGREIQVRALEGLDQGITEILMNRPSARNALGN 315
L+ +L P + E ++ S +P +QV A++ + + + +NRP RNA+
Sbjct: 21 LSLSLHPMSSFTQEEASKAAPSEAPGHNYESLQVTAVQ---KHVLHVQLNRPEKRNAMNR 77
Query: 316 VFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKERE----QMSEAEVGVFVQRL 483
F +++ ++ +D R ++ SG +F +G DL + Q +V L
Sbjct: 78 AFWREMVVCFNKIAQDPDCRAVVI-SGAGKMFTSGIDLVDMASDIFQPQGEDVARISWHL 136
Query: 484 RGLMNE-------IAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGL 642
L+++ I P P IAA+ CD+R A A + E GL
Sbjct: 137 HNLISKYQETFSVIEKCPKPVIAAIHGGCIGGGVDLITACDIRYCAQDAFFQVKEVDIGL 196
Query: 643 LPGAGGTQRLPRCLG-VALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALA 819
G QRLP+ +G +L EL FT R++ +A GLV+ E ALA
Sbjct: 197 AADVGTLQRLPKIIGNQSLVNELAFTARKMMADEALNSGLVSRIFPDQE---VLLEAALA 253
Query: 820 LAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK 993
LA EI ++P+AV+ K+ + + +A G+ + T+D ++ + A EK
Sbjct: 254 LAAEIASKSPVAVQGTKINLLYSRDHSVAEGLNYMKSWNMSMLQTKDVIKSVQAAMEK 311
>ref|XP_003358782.1| PREDICTED: peroxisomal bifunctional enzyme [Sus scrofa].
Length = 723
Score = 82.4 bits (202), Expect = 4e-16
Identities = 57/195 (29%), Positives = 92/195 (47%)
Frame = +1
Query: 259 QGITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKER 438
Q +L R NAL + + E L + D V+ ++ G G+F AGAD+
Sbjct: 8 QNALALLRLRNPPVNALSVSVLHGIKEGLQKALTDHTVKAIVI-CGTDGIFSAGADIHGF 66
Query: 439 EQMSEAEVGVFVQRLRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMG 618
+++ L ++++I + P +AA+ C R+A + A +G
Sbjct: 67 SAHKTSDL-----TLGDIVDKIQRYEKPVVAAIQGLALGGGLELALGCHYRIAHAEAQVG 121
Query: 619 LIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNA 798
E T G+LPGA GTQ LPR +GV A +LI +GR +S +A+ LG+++ V +
Sbjct: 122 FPEVTLGILPGARGTQLLPRLIGVPAALDLITSGRHISANEARKLGILDEVV-----NSD 176
Query: 799 AYHRALALAQEILPQ 843
A+ AQ +L Q
Sbjct: 177 PVEEAIRFAQRVLDQ 191
>ref|XP_003130864.2| PREDICTED: hypothetical protein LOC100513945 [Sus scrofa].
Length = 845
Score = 77.8 bits (190), Expect = 9e-15
Identities = 76/282 (26%), Positives = 116/282 (41%), Gaps = 7/282 (2%)
Frame = +1
Query: 169 WRPLEKTRGCASSPVDAGREIQVRALEGLDQ--GITEILMNRPSARNALGNVFVSQLLEA 342
W PL C+ GR L Q GI I++N P RNAL + L
Sbjct: 568 WAPLA-AGFCSRGSAGVGRPEPGPRLTSARQRDGIRSIVLNNPKRRNALSLAMLKSLQSD 626
Query: 343 LAQLREDRHVRVLIFRSGVKGVFCAGADLKE--REQMSEAEVGVFVQRLRGLMNEIAAFP 516
L E R ++V++ S VF +G DLKE EQ + VF + +M I P
Sbjct: 627 LLHDAESRDLKVIVI-SAEGPVFSSGHDLKELTAEQGPDYHAEVF-RACSEVMMLIQNHP 684
Query: 517 APTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLL---PGAGGTQRLPRCLG 687
P IA ++ CD+ VA+ + T GL PG + LPR
Sbjct: 685 VPIIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVTIGLFCSTPGVAVGRALPR--- 741
Query: 688 VALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQEILPQAPIAVRLG 867
+A E++FTG +S +A GL++ V + + +A+++ + + LG
Sbjct: 742 -KVALEMLFTGEPMSAQEALLHGLLSRVVPEER----LEEETMRIARKVASLSRPVLSLG 796
Query: 868 KLAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK 993
K A R + D+ + + N+ D EG+ AF +K
Sbjct: 797 KAAFYRQLAQDLRTAYHLASQTMVDNLGLPDAQEGIQAFLQK 838
>ref|NP_001106914.1| enoyl-CoA delta isomerase 2, mitochondrial [Sus scrofa].
Length = 394
Score = 60.1 bits (144), Expect = 2e-09
Identities = 54/209 (25%), Positives = 89/209 (42%), Gaps = 4/209 (1%)
Frame = +1
Query: 256 DQGITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKE 435
+ GIT I +NRP+ +NAL ++ AL ED ++ SG +C+G DL
Sbjct: 147 EDGITTIRLNRPAKKNALTTQMYRDIMRALEAASEDSSRITVLTGSG--DYYCSGNDLTN 204
Query: 436 REQMSEAEVGVFVQR----LRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAAS 603
+ + +V Q LR ++ FP P IA ++ D+ A+
Sbjct: 205 FKDIPPDKVEERAQSSAVLLRDFVDRFIDFPKPLIAVVNGPAVGISVTLLGLFDVVYASD 264
Query: 604 SAVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQN 783
A + G P + P+ +G + A E++ G++L+ +A A GLV +
Sbjct: 265 RATFHTPFSHLGQSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGLVTAVFPDD 324
Query: 784 EEGNAAYHRALALAQEILPQAPIAVRLGK 870
+ R A A+ LP P A+R+ K
Sbjct: 325 TFQKEVWARLKAYAK--LP--PNAMRIAK 349
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,415,060
Number of extensions: 926748
Number of successful extensions: 5521
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 5348
Number of HSP's successfully gapped: 9
Length of query: 331
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 232
Effective length of database: 8,879,129
Effective search space: 2059957928
Effective search space used: 2059957928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013275
(995 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081004.2| enoyl-CoA hydratase domain-containing protein 2... 437 e-123
Alignment gi|NP_057918.2| methylglutaconyl-CoA hydratase, mitochondrial p... 276 1e-74
Alignment gi|NP_444349.1| enoyl-CoA hydratase, mitochondrial precursor [M... 117 1e-26
Alignment gi|NP_849209.1| trifunctional enzyme subunit alpha, mitochondri... 90 2e-18
Alignment gi|NP_058052.1| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mi... 82 5e-16
Alignment gi|NP_076226.2| peroxisomal bifunctional enzyme [Mus musculus]. 79 7e-15
Alignment gi|NP_001103665.1| enoyl-CoA hydratase domain-containing protei... 73 4e-13
Alignment gi|NP_080131.4| enoyl-CoA hydratase domain-containing protein 1... 73 4e-13
Alignment gi|NP_077170.2| enoyl-CoA hydratase domain-containing protein 3... 70 2e-12
Alignment gi|NP_666220.1| 3-hydroxyisobutyryl-CoA hydrolase, mitochondria... 67 3e-11
>ref|NP_081004.2| enoyl-CoA hydratase domain-containing protein 2, mitochondrial
precursor [Mus musculus].
Length = 296
Score = 437 bits (1123), Expect = e-123
Identities = 232/289 (80%), Positives = 247/289 (85%)
Frame = +1
Query: 127 MLRTLASALRPPRRWRPLEKTRGCASSPVDAGREIQVRALEGLDQGITEILMNRPSARNA 306
MLR L ALR P WR R CAS EIQV+AL G +QGITEILMNRP+ARNA
Sbjct: 1 MLRVLPRALRLPCSWR-FSGARDCASHATTRTPEIQVQALTGPNQGITEILMNRPNARNA 59
Query: 307 LGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLR 486
LGNVFVS+LLEALAQLRED+ VRVL+FRS VKGVFCAGADLKEREQMS+ EVG FVQRLR
Sbjct: 60 LGNVFVSELLEALAQLREDQQVRVLLFRSAVKGVFCAGADLKEREQMSDVEVGTFVQRLR 119
Query: 487 GLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLLPGAGGTQ 666
GLM+EIAAFP PTIAAMD CDLR+AASSAVMGLIETTRGLLPGAGGTQ
Sbjct: 120 GLMSEIAAFPVPTIAAMDGFALGGGLELALACDLRIAASSAVMGLIETTRGLLPGAGGTQ 179
Query: 667 RLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQEILPQA 846
RLPRCLGVALAKELIFTGRRL+G QA+ LGLVNHAVAQNEEGNAAYHRALALAQEILPQA
Sbjct: 180 RLPRCLGVALAKELIFTGRRLNGAQARELGLVNHAVAQNEEGNAAYHRALALAQEILPQA 239
Query: 847 PIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK 993
PIAVRLGK+AIDRG+EVDIASGMAIE +CYAQNIPT+DRLEGMAAFREK
Sbjct: 240 PIAVRLGKVAIDRGMEVDIASGMAIEQMCYAQNIPTQDRLEGMAAFREK 288
>ref|NP_057918.2| methylglutaconyl-CoA hydratase, mitochondrial precursor [Mus
musculus].
Length = 314
Score = 276 bits (707), Expect = 1e-74
Identities = 141/278 (50%), Positives = 193/278 (69%)
Frame = +1
Query: 160 PRRWRPLEKTRGCASSPVDAGREIQVRALEGLDQGITEILMNRPSARNALGNVFVSQLLE 339
P W R SS V E++VR LE ++GI + +NR +NAL + L +
Sbjct: 29 PAAWARGTAPRRGYSSEVKTEDELRVRHLEEENRGIVVLGINRAYGKNALSKNLLKMLSK 88
Query: 340 ALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLRGLMNEIAAFPA 519
A+ L+ D+ VR +I RS V G+FCAGADLKER +M +EVG FV ++R ++N+IA P
Sbjct: 89 AVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMHSSEVGPFVSKIRSVINDIANLPV 148
Query: 520 PTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLLPGAGGTQRLPRCLGVALA 699
PTIAA+D CD+RVAASSA MGL+ET ++PG GGTQRLPR +G++LA
Sbjct: 149 PTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLA 208
Query: 700 KELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQEILPQAPIAVRLGKLAI 879
KELIF+ R L G +A+A+GL++H + QN+EG+AAY +AL LA+E LPQ P+A+R+ KLAI
Sbjct: 209 KELIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAI 268
Query: 880 DRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK 993
++G+EVD+ +G+AIE CYAQ I T+DRLEG+ AF+EK
Sbjct: 269 NQGMEVDLVTGLAIEEACYAQTISTKDRLEGLLAFKEK 306
>ref|NP_444349.1| enoyl-CoA hydratase, mitochondrial precursor [Mus musculus].
Length = 290
Score = 117 bits (294), Expect = 1e-26
Identities = 77/249 (30%), Positives = 118/249 (47%)
Frame = +1
Query: 247 EGLDQGITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGAD 426
+G + + I +NRP A NAL N + +L +AL +D V ++ G K F AGAD
Sbjct: 41 KGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEQDPAVGAIVLTGGDKA-FAAGAD 99
Query: 427 LKEREQMSEAEVGVFVQRLRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASS 606
+KE + + + + + + I P IAA++ CD+ A
Sbjct: 100 IKEMQNRTFQDC--YSSKFLSHWDHITRVKKPVIAAVNGYALGGGCELAMMCDIIYAGEK 157
Query: 607 AVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNE 786
A G E G +PGAGGTQRL R +G +LA E++ TG R+S A+ GLV+ +
Sbjct: 158 AQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVEK 217
Query: 787 EGNAAYHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRL 966
A+ A++I + I V + K +++ E+ + G +E + T DR
Sbjct: 218 ----LVEEAIQCAEKIASNSKIVVAMAKESVNAAFEMTLTEGNKLEKRLFYSTFATDDRR 273
Query: 967 EGMAAFREK 993
EGM AF EK
Sbjct: 274 EGMTAFVEK 282
>ref|NP_849209.1| trifunctional enzyme subunit alpha, mitochondrial precursor [Mus
musculus].
Length = 763
Score = 90.1 bits (222), Expect = 2e-18
Identities = 66/263 (25%), Positives = 116/263 (44%), Gaps = 7/263 (2%)
Frame = +1
Query: 184 KTRGCASSPVDAGREIQVRAL--EGLDQGITEILMNRPSAR-NALGNVFVSQLLEALAQL 354
++RGC + R G+ + I +N P+++ N L S+ +E + ++
Sbjct: 20 RSRGCICRSFTTSSALLTRTHINYGVKGDVAVIRINSPNSKVNTLNKEVQSEFIEVMNEI 79
Query: 355 REDRHVRVLIFRSGVKGVFCAGADLKEREQMSEAEVGVFV-QRLRGLMNEIAAFPAPTIA 531
+ +R + S G F AGAD+ + + + Q + + ++ P P +A
Sbjct: 80 WANDQIRSAVLISSKPGCFVAGADINMLSSCTTPQEATRISQEGQRMFEKLEKSPKPVVA 139
Query: 532 AMDXXXXXXXXXXXXXCDLRVAASS--AVMGLIETTRGLLPGAGGTQRLPRCLGVALAKE 705
A+ C R+A V+G+ E G+LPGAGGTQRLP+ +GV A +
Sbjct: 140 AISGSCLGGGLELAIACQYRIATKDRKTVLGVPEVLLGILPGAGGTQRLPKMVGVPAAFD 199
Query: 706 LIFTGRRLSGMQAQALGLVNHAVAQNEEG-NAAYHRALALAQEILPQAPIAVRLGKLAID 882
++ TGR + +A+ +GLV+ V G + R + +E +AV K D
Sbjct: 200 MMLTGRNIRADRAKKMGLVDQLVEPLGPGIKSPEERTIEYLEE------VAVNFAKGLAD 253
Query: 883 RGIEVDIASGMAIEGICYAQNIP 951
R + + G+ + YA +P
Sbjct: 254 RKVSAKQSKGLVEKLTTYAMTVP 276
>ref|NP_058052.1| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial
precursor [Mus musculus].
Length = 327
Score = 82.4 bits (202), Expect = 5e-16
Identities = 66/255 (25%), Positives = 113/255 (44%), Gaps = 12/255 (4%)
Frame = +1
Query: 265 ITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADL----K 432
+ + +NRP RNA+ F +L+E ++ +D R ++ SG +F +G DL
Sbjct: 66 VLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVV-SGAGKMFTSGIDLMDMAS 124
Query: 433 EREQMSEAEVGVFVQRLRGLMNE-------IAAFPAPTIAAMDXXXXXXXXXXXXXCDLR 591
E Q S + LR L+++ I P P IAA+ CD+R
Sbjct: 125 ELMQPSGDDAARIAWYLRDLISKYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLVSACDIR 184
Query: 592 VAASSAVMGLIETTRGLLPGAGGTQRLPRCLG-VALAKELIFTGRRLSGMQAQALGLVNH 768
A + E GL G QRLP+ +G +L EL F+ R++ +A GLV+
Sbjct: 185 YCTQDAFFQIKEVDMGLAADVGTLQRLPKVIGNQSLVNELTFSARKMMADEALDSGLVSR 244
Query: 769 AVAQNEEGNAAYHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNI 948
++ +A + A ALA +I ++P+AV+ K+ + + + + +
Sbjct: 245 VF---QDKDAMLNAAFALAADISSKSPVAVQGSKINLIYSRDHSVDESLDYMATWNMSML 301
Query: 949 PTRDRLEGMAAFREK 993
T+D ++ + A EK
Sbjct: 302 QTQDIIKSVQAAMEK 316
>ref|NP_076226.2| peroxisomal bifunctional enzyme [Mus musculus].
Length = 718
Score = 78.6 bits (192), Expect = 7e-15
Identities = 52/181 (28%), Positives = 86/181 (47%)
Frame = +1
Query: 301 NALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMSEAEVGVFVQR 480
NA+ ++++ L + D VR ++ G FCAGAD+ + + +G
Sbjct: 22 NAISPTVITEVRNGLQKASLDHTVRAIVI-CGANDNFCAGADIHGFKSPTGLTLG----- 75
Query: 481 LRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLLPGAGG 660
L++EI + P +AA+ C R+A + A +G E G+LPGA G
Sbjct: 76 --SLVDEIQRYQKPVVAAIQGVALGGGLELALGCHYRIANAKARVGFPEVMLGILPGARG 133
Query: 661 TQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQEILP 840
TQ LPR +GV +A +LI +GR +S +A LG+++ V + A + + I P
Sbjct: 134 TQLLPRVVGVPVALDLITSGRHISTDEALKLGILDVVVKSDPVEEAIKFAQTVIGKPIEP 193
Query: 841 Q 843
+
Sbjct: 194 R 194
>ref|NP_001103665.1| enoyl-CoA hydratase domain-containing protein 1 isoform b [Mus
musculus].
Length = 299
Score = 72.8 bits (177), Expect = 4e-13
Identities = 53/222 (23%), Positives = 97/222 (43%), Gaps = 1/222 (0%)
Frame = +1
Query: 262 GITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKERE 441
GI + +N P+ NA V + QLLE + +L + LI G K FC+G+DL +
Sbjct: 55 GIGILTLNNPNKMNAFSGVMMLQLLERVIELENWTEGKGLIIH-GAKNTFCSGSDLNAVK 113
Query: 442 QMSEAEVGVFVQR-LRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMG 618
+S E GV + ++ + P ++A + CD R+ +V+
Sbjct: 114 ALSTPESGVALSMFMQNTLTRFMRLPLISVALVQGWAMGGGAELTTACDFRLMTEESVIR 173
Query: 619 LIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNA 798
+ G++P GGT RL +G A +++ +L +A +GL + + ++E
Sbjct: 174 FVHKEMGIVPSWGGTSRLVEIIGSRQALKVLSGTLKLDSKEALNIGLTDEVLQPSDE-TT 232
Query: 799 AYHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIE 924
A +A ++ + P +R K ++ E+ I + E
Sbjct: 233 ALEQAQEWLEKFVSGPPQVIRGLKKSVCSARELYIEEALQNE 274
>ref|NP_080131.4| enoyl-CoA hydratase domain-containing protein 1 isoform a [Mus
musculus].
Length = 322
Score = 72.8 bits (177), Expect = 4e-13
Identities = 53/222 (23%), Positives = 97/222 (43%), Gaps = 1/222 (0%)
Frame = +1
Query: 262 GITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKERE 441
GI + +N P+ NA V + QLLE + +L + LI G K FC+G+DL +
Sbjct: 78 GIGILTLNNPNKMNAFSGVMMLQLLERVIELENWTEGKGLIIH-GAKNTFCSGSDLNAVK 136
Query: 442 QMSEAEVGVFVQR-LRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMG 618
+S E GV + ++ + P ++A + CD R+ +V+
Sbjct: 137 ALSTPESGVALSMFMQNTLTRFMRLPLISVALVQGWAMGGGAELTTACDFRLMTEESVIR 196
Query: 619 LIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNA 798
+ G++P GGT RL +G A +++ +L +A +GL + + ++E
Sbjct: 197 FVHKEMGIVPSWGGTSRLVEIIGSRQALKVLSGTLKLDSKEALNIGLTDEVLQPSDE-TT 255
Query: 799 AYHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIE 924
A +A ++ + P +R K ++ E+ I + E
Sbjct: 256 ALEQAQEWLEKFVSGPPQVIRGLKKSVCSARELYIEEALQNE 297
>ref|NP_077170.2| enoyl-CoA hydratase domain-containing protein 3, mitochondrial
precursor [Mus musculus].
Length = 300
Score = 70.5 bits (171), Expect = 2e-12
Identities = 68/277 (24%), Positives = 110/277 (39%), Gaps = 2/277 (0%)
Frame = +1
Query: 169 WRPLEKTRGCASSPVDAGREIQVRALEGLDQ-GITEILMNRPSARNALGNVFVSQLLEAL 345
W PL S AG E + R Q GI I+++ P RNAL + L +
Sbjct: 23 WAPLSAGFCSPGSAGPAGSESEPRLTSTRQQDGIRNIVLSNPRRRNALSLAMLKSLRSDI 82
Query: 346 AQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMSEAEVGVFV-QRLRGLMNEIAAFPAP 522
E ++V+I S VF +G DLKE + V Q +M I P P
Sbjct: 83 LHEAESEDLKVIII-SAEGPVFSSGHDLKELTDAQGRDYHAEVFQTCSEVMMLIRNHPVP 141
Query: 523 TIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLLPGAGGTQRLPRCLGVALAK 702
+A ++ CD+ VA+ + GL L R + +A
Sbjct: 142 ILAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPAVA-LGRAVPRKVAL 200
Query: 703 ELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQEILPQAPIAVRLGKLAID 882
E++FTG +S +A GL++ V + + + +A++I + V LGK
Sbjct: 201 EMLFTGEPISAQEALRHGLISKVVPEEQ----LEAETMRIAKKISSLSRSVVALGKATFY 256
Query: 883 RGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK 993
+ + D+ + + N+ +D EG+ AF +K
Sbjct: 257 KQLPQDLRTAYFLASQAMVDNLALQDGQEGIEAFIQK 293
>ref|NP_666220.1| 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial precursor [Mus
musculus].
Length = 385
Score = 66.6 bits (161), Expect = 3e-11
Identities = 50/170 (29%), Positives = 68/170 (40%), Gaps = 3/170 (1%)
Frame = +1
Query: 274 ILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMSE 453
I +NRP NAL + Q+ L +D ++I + FCAG D+K + +
Sbjct: 48 ITLNRPKFLNALSLNMIRQIYPQLKTWEQDPDTFLIIIKGAGGKAFCAGGDIKALSEAKK 107
Query: 454 AEVGVFVQRLRG---LMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLI 624
A + R L N IA+ P +A +D RVA ++ +
Sbjct: 108 ARQNLTQDLFREEYILNNAIASCQKPYVALIDGITMGGGVGLSVHGQFRVATERSLFAMP 167
Query: 625 ETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAV 774
ET GL P GG LPR G L L TG RL G G+ H V
Sbjct: 168 ETGIGLFPDVGGGYFLPRLQG-KLGYFLALTGYRLKGRDVHRAGIATHFV 216
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,958,438
Number of extensions: 1146944
Number of successful extensions: 5974
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 5779
Number of HSP's successfully gapped: 17
Length of query: 331
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 229
Effective length of database: 12,553,887
Effective search space: 2874840123
Effective search space used: 2874840123
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013275
(995 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001185890.1| enoyl-CoA hydratase domain-containing protei... 451 e-127
Alignment gi|NP_060751.2| enoyl-CoA hydratase domain-containing protein 2... 404 e-113
Alignment gi|NP_001185891.1| enoyl-CoA hydratase domain-containing protei... 365 e-101
Alignment gi|NP_001689.1| methylglutaconyl-CoA hydratase, mitochondrial p... 278 6e-75
Alignment gi|NP_004083.3| enoyl-CoA hydratase, mitochondrial precursor [H... 120 3e-27
Alignment gi|NP_001389.2| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mi... 86 7e-17
Alignment gi|NP_078969.2| enoyl-CoA hydratase domain-containing protein 3... 80 3e-15
Alignment gi|NP_000173.2| trifunctional enzyme subunit alpha, mitochondri... 80 3e-15
Alignment gi|NP_001957.2| peroxisomal bifunctional enzyme isoform 1 [Homo... 77 2e-14
Alignment gi|NP_001002030.1| enoyl-CoA hydratase domain-containing protei... 72 8e-13
>ref|NP_001185890.1| enoyl-CoA hydratase domain-containing protein 2, mitochondrial
isoform 1 [Homo sapiens].
Length = 292
Score = 451 bits (1159), Expect = e-127
Identities = 243/289 (84%), Positives = 251/289 (86%)
Frame = +1
Query: 127 MLRTLASALRPPRRWRPLEKTRGCASSPVDAGREIQVRALEGLDQGITEILMNRPSARNA 306
MLR L LRP WRPL + RGCAS G EIQVRAL G DQGITEILMNRPSARNA
Sbjct: 1 MLRVLC-LLRP---WRPL-RARGCASDGAAGGSEIQVRALAGPDQGITEILMNRPSARNA 55
Query: 307 LGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLR 486
LGNVFVS+LLE LAQLREDR VRVL+FRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLR
Sbjct: 56 LGNVFVSELLETLAQLREDRQVRVLLFRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLR 115
Query: 487 GLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLLPGAGGTQ 666
GLMN+IAAFPAPTIAAMD CDLRVAASSAVMGLIETTRGLLPGAGGTQ
Sbjct: 116 GLMNDIAAFPAPTIAAMDGFALGGGLELALACDLRVAASSAVMGLIETTRGLLPGAGGTQ 175
Query: 667 RLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQEILPQA 846
RLPRCLGVALAKELIFTGRRLSG +A LGLVNHAVAQNEEG+AAY RA ALAQEILPQA
Sbjct: 176 RLPRCLGVALAKELIFTGRRLSGTEAHVLGLVNHAVAQNEEGDAAYQRARALAQEILPQA 235
Query: 847 PIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK 993
PIAVRLGK+AIDRG EVDIASGMAIEG+CYAQNIPTRDRLEGMAAFREK
Sbjct: 236 PIAVRLGKVAIDRGTEVDIASGMAIEGMCYAQNIPTRDRLEGMAAFREK 284
>ref|NP_060751.2| enoyl-CoA hydratase domain-containing protein 2, mitochondrial
isoform 2 [Homo sapiens].
Length = 261
Score = 404 bits (1038), Expect = e-113
Identities = 225/289 (77%), Positives = 233/289 (80%)
Frame = +1
Query: 127 MLRTLASALRPPRRWRPLEKTRGCASSPVDAGREIQVRALEGLDQGITEILMNRPSARNA 306
MLR L LRP WRPL + RGCAS G EIQVRAL G DQGITEILMNRPSARNA
Sbjct: 1 MLRVLC-LLRP---WRPL-RARGCASDGAAGGSEIQVRALAGPDQGITEILMNRPSARNA 55
Query: 307 LGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLR 486
LGNVFVS+LLE LAQLREDR VRVL+FRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLR
Sbjct: 56 LGNVFVSELLETLAQLREDRQVRVLLFRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLR 115
Query: 487 GLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLLPGAGGTQ 666
GLMN+IA SSAVMGLIETTRGLLPGAGGTQ
Sbjct: 116 GLMNDIA-------------------------------SSAVMGLIETTRGLLPGAGGTQ 144
Query: 667 RLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQEILPQA 846
RLPRCLGVALAKELIFTGRRLSG +A LGLVNHAVAQNEEG+AAY RA ALAQEILPQA
Sbjct: 145 RLPRCLGVALAKELIFTGRRLSGTEAHVLGLVNHAVAQNEEGDAAYQRARALAQEILPQA 204
Query: 847 PIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK 993
PIAVRLGK+AIDRG EVDIASGMAIEG+CYAQNIPTRDRLEGMAAFREK
Sbjct: 205 PIAVRLGKVAIDRGTEVDIASGMAIEGMCYAQNIPTRDRLEGMAAFREK 253
>ref|NP_001185891.1| enoyl-CoA hydratase domain-containing protein 2, mitochondrial
isoform 3 [Homo sapiens].
Length = 244
Score = 365 bits (937), Expect = e-101
Identities = 210/289 (72%), Positives = 217/289 (75%)
Frame = +1
Query: 127 MLRTLASALRPPRRWRPLEKTRGCASSPVDAGREIQVRALEGLDQGITEILMNRPSARNA 306
MLR L LRP WRPL + RGCAS G EIQVRAL G DQGITEILMNRPSARNA
Sbjct: 1 MLRVLC-LLRP---WRPL-RARGCASDGAAGGSEIQVRALAGPDQGITEILMNRPSARNA 55
Query: 307 LGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLR 486
LGNVFVS+LLE LAQLREDR VRVL+FRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLR
Sbjct: 56 LGNVFVSELLETLAQLREDRQVRVLLFRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLR 115
Query: 487 GLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLLPGAGGTQ 666
GLMN+IA SSAVMGLIETTRGLLPGAGGTQ
Sbjct: 116 GLMNDIA-------------------------------SSAVMGLIETTRGLLPGAGGTQ 144
Query: 667 RLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQEILPQA 846
RLPRCLGVALAKELIFTGRRLSG +A LGLVNHAVAQNEEG+AAY RA ALAQEILPQ
Sbjct: 145 RLPRCLGVALAKELIFTGRRLSGTEAHVLGLVNHAVAQNEEGDAAYQRARALAQEILPQ- 203
Query: 847 PIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK 993
VDIASGMAIEG+CYAQNIPTRDRLEGMAAFREK
Sbjct: 204 ----------------VDIASGMAIEGMCYAQNIPTRDRLEGMAAFREK 236
>ref|NP_001689.1| methylglutaconyl-CoA hydratase, mitochondrial precursor [Homo
sapiens].
Length = 339
Score = 278 bits (711), Expect = 6e-75
Identities = 138/264 (52%), Positives = 192/264 (72%)
Frame = +1
Query: 202 SSPVDAGREIQVRALEGLDQGITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVL 381
SS + E++VR LE ++GI + +NR +N+L + L +A+ L+ D+ VR +
Sbjct: 68 SSEMKTEDELRVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTI 127
Query: 382 IFRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLRGLMNEIAAFPAPTIAAMDXXXXXXX 561
I RS V G+FCAGADLKER +MS +EVG FV ++R ++N+IA P PTIAA+D
Sbjct: 128 IIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGG 187
Query: 562 XXXXXXCDLRVAASSAVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQ 741
CD+RVAASSA MGL+ET ++PG GGTQRLPR +G++LAKELIF+ R L G +
Sbjct: 188 LELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKE 247
Query: 742 AQALGLVNHAVAQNEEGNAAYHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAI 921
A+A+GL++H + QN+EG+AAY +AL LA+E LPQ P+A+R+ KLAI++G+EVD+ +G+AI
Sbjct: 248 AKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAI 307
Query: 922 EGICYAQNIPTRDRLEGMAAFREK 993
E CYAQ IPT+DRLEG+ AF+EK
Sbjct: 308 EEACYAQTIPTKDRLEGLLAFKEK 331
>ref|NP_004083.3| enoyl-CoA hydratase, mitochondrial precursor [Homo sapiens].
Length = 290
Score = 120 bits (300), Expect = 3e-27
Identities = 87/292 (29%), Positives = 130/292 (44%), Gaps = 3/292 (1%)
Frame = +1
Query: 127 MLRTLASALRPPRR---WRPLEKTRGCASSPVDAGREIQVRALEGLDQGITEILMNRPSA 297
+L + LRPP R WRP A E + G + + I +NRP A
Sbjct: 7 LLSCVRGPLRPPVRCPAWRPFAS---------GANFEYIIAEKRGKNNTVGLIQLNRPKA 57
Query: 298 RNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMSEAEVGVFVQ 477
NAL + + +L +AL ED V ++ G K F AGAD+KE + +S + +
Sbjct: 58 LNALCDGLIDELNQALKTFEEDPAVGAIVLTGGDKA-FAAGADIKEMQNLSFQDC--YSS 114
Query: 478 RLRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLLPGAG 657
+ + + P IAA++ CD+ A A E G +PGAG
Sbjct: 115 KFLKHWDHLTQVKKPVIAAVNGYAFGGGCELAMMCDIIYAGEKAQFAQPEILIGTIPGAG 174
Query: 658 GTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQEIL 837
GTQRL R +G +LA E++ TG R+S A+ GLV+ A+ A++I
Sbjct: 175 GTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKICPV----ETLVEEAIQCAEKIA 230
Query: 838 PQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK 993
+ I V + K +++ E+ + G +E + T DR EGM AF EK
Sbjct: 231 SNSKIVVAMAKESVNAAFEMTLTEGSKLEKKLFYSTFATDDRKEGMTAFVEK 282
>ref|NP_001389.2| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial
precursor [Homo sapiens].
Length = 328
Score = 85.5 bits (210), Expect = 7e-17
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 12/254 (4%)
Frame = +1
Query: 265 ITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQ 444
+ + +NRP+ RNA+ VF +++E ++ D R ++ SG +F AG DL +
Sbjct: 67 VLHVQLNRPNKRNAMNKVFWREMVECFNKISRDADCRAVVI-SGAGKMFTAGIDLMDMAS 125
Query: 445 MSEAEVGVFVQRLRGLM-----------NEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLR 591
G V R+ + N I P P IAA+ CD+R
Sbjct: 126 DILQPKGDDVARISWYLRDIITRYQETFNVIERCPKPVIAAVHGGCIGGGVDLVTACDIR 185
Query: 592 VAASSAVMGLIETTRGLLPGAGGTQRLPRCLG-VALAKELIFTGRRLSGMQAQALGLVNH 768
A A + E GL G QRLP+ +G +L EL FT R++ +A GLV+
Sbjct: 186 YCAQDAFFQVKEVDVGLAADVGTLQRLPKVIGNQSLVNELAFTARKMMADEALGSGLVSR 245
Query: 769 AVAQNEEGNAAYHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNI 948
E ALALA EI ++P+AV+ K+ + + +A + +
Sbjct: 246 VFPDKE---VMLDAALALAAEISSKSPVAVQSTKVNLLYSRDHSVAESLNYVASWNMSML 302
Query: 949 PTRDRLEGMAAFRE 990
T+D ++ + A E
Sbjct: 303 QTQDLVKSVQATTE 316
>ref|NP_078969.2| enoyl-CoA hydratase domain-containing protein 3, mitochondrial
precursor [Homo sapiens].
Length = 303
Score = 80.1 bits (196), Expect = 3e-15
Identities = 74/276 (26%), Positives = 117/276 (42%), Gaps = 8/276 (2%)
Frame = +1
Query: 190 RGCASSPVDAGR---EIQVRALEGLDQGITEILMNRPSARNALGNVFVSQLLEALAQLRE 360
R C+ P AGR E + + LD GI I+++ P RN L + L + +
Sbjct: 29 RFCSRDPAGAGRRESEPRPTSARQLD-GIRNIVLSNPKKRNTLSLAMLKSLQSDILHDAD 87
Query: 361 DRHVRVLIFRSGVKGVFCAGADLKE--REQMSEAEVGVFVQRLRGLMNEIAAFPAPTIAA 534
++V+I S VF +G DLKE EQ + VF Q +M I P P IA
Sbjct: 88 SNDLKVIII-SAEGPVFSSGHDLKELTEEQGRDYHAEVF-QTCSKVMMHIRNHPVPVIAM 145
Query: 535 MDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLL---PGAGGTQRLPRCLGVALAKE 705
++ CD+ VA+ + GL PG + +PR +A E
Sbjct: 146 VNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVALARAVPR----KVALE 201
Query: 706 LIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQEILPQAPIAVRLGKLAIDR 885
++FTG +S +A GL++ V + E + +A++I + V LGK +
Sbjct: 202 MLFTGEPISAQEALLHGLLSKVVPEAE----LQEETMRIARKIASLSRPVVSLGKATFYK 257
Query: 886 GIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREK 993
+ D+ + + N+ RD EG+ AF +K
Sbjct: 258 QLPQDLGTAYYLTSQAMVDNLALRDGQEGITAFLQK 293
>ref|NP_000173.2| trifunctional enzyme subunit alpha, mitochondrial precursor [Homo
sapiens].
Length = 763
Score = 80.1 bits (196), Expect = 3e-15
Identities = 62/239 (25%), Positives = 103/239 (43%), Gaps = 5/239 (2%)
Frame = +1
Query: 250 GLDQGITEILMNRPSAR-NALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGAD 426
G+ + + +N P+++ N L S+ E + ++ +R + S G F AGAD
Sbjct: 44 GVKGDVAVVRINSPNSKVNTLSKELHSEFSEVMNEIWASDQIRSAVLISSKPGCFIAGAD 103
Query: 427 LKEREQMSEA-EVGVFVQRLRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAAS 603
+ EV Q + ++ ++ P +AA++ C R+A
Sbjct: 104 INMLAACKTLQEVTQLSQEAQRIVEKLEKSTKPIVAAINGSCLGGGLEVAISCQYRIATK 163
Query: 604 S--AVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVA 777
V+G E G LPGAGGTQRLP+ +GV A +++ TGR + +A+ +GLV+ V
Sbjct: 164 DRKTVLGTPEVLLGALPGAGGTQRLPKMVGVPAALDMMLTGRSIRADRAKKMGLVDQLVE 223
Query: 778 QNEEG-NAAYHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIP 951
G R + +E +A+ K D+ I G+ + YA IP
Sbjct: 224 PLGPGLKPPEERTIEYLEE------VAITFAKGLADKKISPKRDKGLVEKLTAYAMTIP 276
>ref|NP_001957.2| peroxisomal bifunctional enzyme isoform 1 [Homo sapiens].
Length = 723
Score = 77.0 bits (188), Expect = 2e-14
Identities = 51/158 (32%), Positives = 78/158 (49%)
Frame = +1
Query: 301 NALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMSEAEVGVFVQR 480
NA+ + + E L + D ++ ++ G +G F AGAD++ + F
Sbjct: 22 NAISTTLLRDIKEGLQKAVIDHTIKAIVI-CGAEGKFSAGADIR-----GFSAPRTFGLT 75
Query: 481 LRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAASSAVMGLIETTRGLLPGAGG 660
L +++EI P +AA+ C R+A + A +GL E T GLLPGA G
Sbjct: 76 LGHVVDEIQRNEKPVVAAIQGMAFGGGLELALGCHYRIAHAEAQVGLPEVTLGLLPGARG 135
Query: 661 TQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAV 774
TQ LPR GV A +LI +GRR+ +A LG+++ V
Sbjct: 136 TQLLPRLTGVPAALDLITSGRRILADEALKLGILDKVV 173
>ref|NP_001002030.1| enoyl-CoA hydratase domain-containing protein 1 isoform 1 [Homo
sapiens].
Length = 301
Score = 72.0 bits (175), Expect = 8e-13
Identities = 58/232 (25%), Positives = 100/232 (43%), Gaps = 5/232 (2%)
Frame = +1
Query: 244 LEGLDQGITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGA 423
L+ D GI + +N PS NA V + QLLE + +L + LI R G K F +G+
Sbjct: 51 LQKEDNGIGILTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGLIVR-GAKNTFSSGS 109
Query: 424 DLKEREQMSEAEVGVFV-QRLRGLMNEIAAFPAPTIAAMDXXXXXXXXXXXXXCDLRVAA 600
DL + + E G+ V ++ + P ++A + CD R+
Sbjct: 110 DLNAVKSLGTPEDGMAVCMFMQNTLTRFMRLPLISVALVQGWALGGGAEFTTACDFRLMT 169
Query: 601 SSAVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQ 780
+ + + G++P GGT RL +G A +++ +L A +G+V +
Sbjct: 170 PESKIRFVHKEMGIIPSWGGTTRLVEIIGSRQALKVLSGALKLDSKNALNIGMVEEVLQS 229
Query: 781 NEEGNAAYHRALALAQEILPQ----APIAVRLGKLAIDRGIEVDIASGMAIE 924
++E ++L AQE L Q P +R K ++ G E+ + + E
Sbjct: 230 SDE-----TKSLEEAQEWLKQFIQGPPEVIRALKKSVCSGRELYLEEALQNE 276
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,982,263
Number of extensions: 1411350
Number of successful extensions: 7791
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 7596
Number of HSP's successfully gapped: 30
Length of query: 331
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,901,872
Effective search space: 3397626816
Effective search space used: 3397626816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013275
(995 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 381 e-103
Sscrofa_Chr01 186 2e-44
>Sscrofa_Chr06
|| Length = 157765593
Score = 381 bits (192), Expect = e-103
Identities = 192/192 (100%)
Strand = Plus / Plus
Query: 653 cagggggcactcagaggctgcctcgatgcctgggcgtggccctggcgaaggagctcatct 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146957965 cagggggcactcagaggctgcctcgatgcctgggcgtggccctggcgaaggagctcatct 146958024
Query: 713 tcacaggccgacgactgagtgggatgcaggcccaggctctggggctggtgaaccatgctg 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146958025 tcacaggccgacgactgagtgggatgcaggcccaggctctggggctggtgaaccatgctg 146958084
Query: 773 tggcccagaacgaggagggcaacgccgcctaccaccgggctctagcactggcccaggaga 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146958085 tggcccagaacgaggagggcaacgccgcctaccaccgggctctagcactggcccaggaga 146958144
Query: 833 tcctgccccagg 844
||||||||||||
Sbjct: 146958145 tcctgccccagg 146958156
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 328 cagctgctggaagccctggcccagctgcgggaggaccggcacgtgcgcgtcctcatcttc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146951497 cagctgctggaagccctggcccagctgcgggaggaccggcacgtgcgcgtcctcatcttc 146951556
Query: 388 agaagtggagtgaagggtgtattctgcgcaggtg 421
||||||||||||||||||||||||||||||||||
Sbjct: 146951557 agaagtggagtgaagggtgtattctgcgcaggtg 146951590
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 505 gcagccttccctgcgcccaccatcgcagctatggatgggtttgccttgggcggaggcctg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146955560 gcagccttccctgcgcccaccatcgcagctatggatgggtttgccttgggcggaggcctg 146955619
Query: 565 gaacttgccctggcctgtgacctccgagtggcag 598
||||||||||||||||||||||||||||||||||
Sbjct: 146955620 gaacttgccctggcctgtgacctccgagtggcag 146955653
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 415 gcaggtgcagacctgaaggagcgggagcagatgagtgaggcggaggtgggggtctttgtc 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146954499 gcaggtgcagacctgaaggagcgggagcagatgagtgaggcggaggtgggggtctttgtc 146954558
Query: 475 cagcggctccgaggcctgatgaatgagattg 505
|||||||||||||||||||||||||||||||
Sbjct: 146954559 cagcggctccgaggcctgatgaatgagattg 146954589
Score = 139 bits (70), Expect = 3e-30
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 261 aggaatcactgagattctgatgaacagaccgagcgcccgaaatgccctggggaatgtctt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146951361 aggaatcactgagattctgatgaacagaccgagcgcccgaaatgccctggggaatgtctt 146951420
Query: 321 tgtcagccag 330
||||||||||
Sbjct: 146951421 tgtcagccag 146951430
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 595 gcagcttcctcggctgtcatggggctgatcgagaccacccgagggctcctcccgggagca 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146957704 gcagcttcctcggctgtcatggggctgatcgagaccacccgagggctcctcccgggagca 146957763
Query: 655 gg 656
||
Sbjct: 146957764 gg 146957765
Score = 111 bits (56), Expect = 7e-22
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 842 aggctcccattgctgtgcggctgggcaaactagctattgaccgaggaatagaggtg 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146963388 aggctcccattgctgtgcggctgggcaaactagctattgaccgaggaatagaggtg 146963443
Score = 111 bits (56), Expect = 7e-22
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 940 cagaacatcccgacccgagatcgcctggaaggcatggcagccttcagggagaagcg 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146965962 cagaacatcccgacccgagatcgcctggaaggcatggcagccttcagggagaagcg 146966017
Score = 99.6 bits (50), Expect = 3e-18
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 893 aggtggacattgcatcagggatggccattgaagggatatgctatgcccag 942
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146964845 aggtggacattgcatcagggatggccattgaagggatatgctatgcccag 146964894
>Sscrofa_Chr01
|| Length = 315321322
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 505 gcagccttccctgcgcccaccatcgcagctatggatgggtttgccttgggcggaggcctg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68678637 gcagccttccctgcgcccaccatcgcagctatggatgggtttgccttgggcggaggcctg 68678696
Query: 565 gaacttgccctggcctgtgacctccgagtggcag 598
||||||||||||||||||||||||||||||||||
Sbjct: 68678697 gaacttgccctggcctgtgacctccgagtggcag 68678730
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 415 gcaggtgcagacctgaaggagcgggagcagatgagtgaggcggaggtgggggtctttgtc 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68677576 gcaggtgcagacctgaaggagcgggagcagatgagtgaggcggaggtgggggtctttgtc 68677635
Query: 475 cagcggctccgaggcctgatgaatgagattg 505
|||||||||||||||||||||||||||||||
Sbjct: 68677636 cagcggctccgaggcctgatgaatgagattg 68677666
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,603,453
Number of extensions: 168
Number of successful extensions: 168
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 11
Length of query: 995
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 974
Effective length of database: 2,808,413,156
Effective search space: 2735394413944
Effective search space used: 2735394413944
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)