Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013312
(2807 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029895.1| lon protease homolog 2, peroxisomal [Bos tau... 1474 0.0
Alignment gi|NP_001015569.2| lon protease homolog, mitochondrial precurso... 406 e-113
>ref|NP_001029895.1| lon protease homolog 2, peroxisomal [Bos taurus].
Length = 852
Score = 1474 bits (3815), Expect = 0.0
Identities = 753/820 (91%), Positives = 766/820 (93%)
Frame = +1
Query: 139 VNPIQIPSRLPLLLTHEGVLLPGSTMRTSVDSPRNLQLVRSRLLKGTSLQSTILGVIPNT 318
V+PIQIPSRLPLLLTHEGVLLPGSTMRTSVDS RNLQLVRSRLLKGTSLQSTILGVIPNT
Sbjct: 4 VSPIQIPSRLPLLLTHEGVLLPGSTMRTSVDSARNLQLVRSRLLKGTSLQSTILGVIPNT 63
Query: 319 PDPASDAQDLPPLHRIGTAALAVQVVGSNWPKPHYTLLITGLCRFQIVQVVKEKPYPVAE 498
PDPASDAQDLPPLHRIGTAALAVQVVGSNWPKPHYTLLITGLCRFQI QVV+EKPYPVAE
Sbjct: 64 PDPASDAQDLPPLHRIGTAALAVQVVGSNWPKPHYTLLITGLCRFQITQVVREKPYPVAE 123
Query: 499 VEQLDRLEEFPNTCKTREELGELSEQFYKYAVQLVEMLDMSVPAVAKLRRLLDSLPREAL 678
VEQLDRLEEFPNTCKTREELGELSEQFYKYAVQLVEMLDMSVPAVAKLRRLLDSLPREAL
Sbjct: 124 VEQLDRLEEFPNTCKTREELGELSEQFYKYAVQLVEMLDMSVPAVAKLRRLLDSLPREAL 183
Query: 679 PDILTSIIRTSNKEKLQILDAVSLEERFKMTIPLLVRQIEGLKLLQKTRKHKQDDEKRVI 858
PDILTSIIRTSNKEKLQILDAVSLEERFKMTIPLLVRQIEGLKLLQKTRKHKQDD+KRVI
Sbjct: 184 PDILTSIIRTSNKEKLQILDAVSLEERFKMTIPLLVRQIEGLKLLQKTRKHKQDDDKRVI 243
Query: 859 AIRPIRRITHIPGALXXXXXXXXXXXIVMLEKKIRTSNMPEQAHKVCVKEIKRLKKMPQS 1038
AIRP+RRITH+PGAL IVMLEKKIRTS+MPEQAHKVCVKEIKRLKKMPQS
Sbjct: 244 AIRPMRRITHVPGALADEDEDEDNDDIVMLEKKIRTSSMPEQAHKVCVKEIKRLKKMPQS 303
Query: 1039 MPEYALTRNYLELMVELPWNKSTTDRLDIRAARILLDNDHYAMEKLKKRVLEYLAVRQLK 1218
MPEYALTRNYLELMVELPWNKSTTDRLDIRAAR+LLDNDHYAMEKLKKRVLEYLAVRQLK
Sbjct: 304 MPEYALTRNYLELMVELPWNKSTTDRLDIRAARVLLDNDHYAMEKLKKRVLEYLAVRQLK 363
Query: 1219 NNLKGPILCFVGPPGVGKTSVGRSVAKTLGREFHRIALGGVCDQSDIRGHRRTYVGSMPG 1398
NNLKGPILCFVGPPGVGKTSVGRSVAKTLGREFHRIALGGVCDQSDIRGHRRTYVGSMPG
Sbjct: 364 NNLKGPILCFVGPPGVGKTSVGRSVAKTLGREFHRIALGGVCDQSDIRGHRRTYVGSMPG 423
Query: 1399 RIINGLKTVGVNNPVFLLDEVDKLGKSLQGDPAAALLEVLDPEQNHNFTDHYLNVAFDLS 1578
RIINGLKTVGVNNPVFLLDEVDKLGKSLQGDPAAALLEVLDPEQNHNFTDHYLNVAFDLS
Sbjct: 424 RIINGLKTVGVNNPVFLLDEVDKLGKSLQGDPAAALLEVLDPEQNHNFTDHYLNVAFDLS 483
Query: 1579 QVLFXXXXXXXXXXXXXLLDRMEIIQVPGYTQEEKIEIAHRHLIPKQLEQHGLTXXXXXX 1758
QVLF LLDRMEIIQVPGYTQEEKIEIAHRHLIPKQLEQHGLT
Sbjct: 484 QVLFIATANTTASIPPALLDRMEIIQVPGYTQEEKIEIAHRHLIPKQLEQHGLTPQQIQI 543
Query: 1759 XXVTTLDVITRYTREAGVRSLDRKLGAICRAVAVKVAEGQHREAKLDRPGVAEGEGGKEH 1938
VTTLD+ITRYTREAGVRSLDRKLGAICRAVAVKVAEGQHREAKLDRP VAEGEG KEH
Sbjct: 544 PQVTTLDIITRYTREAGVRSLDRKLGAICRAVAVKVAEGQHREAKLDRPDVAEGEGCKEH 603
Query: 1939 ILEDAKPDSIDDTTDLGLPPEMPILIDFHALKDILGPPMYEMEVSERLSQPGVAIGLAWT 2118
+LED K D + DTTDL LPPEMPILIDFHALKDILGPPMYEMEVSERLSQPGVAIGLAWT
Sbjct: 604 LLEDGKSDPVSDTTDLALPPEMPILIDFHALKDILGPPMYEMEVSERLSQPGVAIGLAWT 663
Query: 2119 PLGGEIMFVEASRMDGEXXXXXXXXXXDVMKESAHLAISWLRSNAKKYHLTNASGSFDLL 2298
PLGGEIMFVEASRMDGE +VMKESAHLAISWLRSNAKKYHLTNASGSFDLL
Sbjct: 664 PLGGEIMFVEASRMDGEGQLTLTGQLGNVMKESAHLAISWLRSNAKKYHLTNASGSFDLL 723
Query: 2299 ENTDIHLHFPAGAVTKDGPSAGVTIATCLASLFSGRLVRSDVAMTGEITLRGLVLPVGGI 2478
ENTDIHLHFPAGAVTKDGPSAGVTIATCLASLFSGRLVRSDVAMTGEITLRGLVLPVGGI
Sbjct: 724 ENTDIHLHFPAGAVTKDGPSAGVTIATCLASLFSGRLVRSDVAMTGEITLRGLVLPVGGI 783
Query: 2479 KDKVLAAHRAGLKHVIIPQRNEKDLEEIPGNVRQDLSFVS 2598
KDK LAAHRAGLK VIIPQRNEKDLEEIP NVRQDLSF++
Sbjct: 784 KDKALAAHRAGLKRVIIPQRNEKDLEEIPANVRQDLSFIT 823
Score = 60.8 bits (146), Expect = 6e-09
Identities = 28/31 (90%), Positives = 30/31 (96%)
Frame = +2
Query: 2591 LSASCLDEVLNAAFDGGFTVKTRPGLLNSKL 2683
++ASCLDEVLNAAFDGGFTVK RPGLLNSKL
Sbjct: 822 ITASCLDEVLNAAFDGGFTVKARPGLLNSKL 852
>ref|NP_001015569.2| lon protease homolog, mitochondrial precursor [Bos taurus].
Length = 961
Score = 406 bits (1043), Expect = e-113
Identities = 244/721 (33%), Positives = 382/721 (52%), Gaps = 14/721 (1%)
Frame = +1
Query: 466 VVKEKPYPVAEVEQLDRLEEFPNTCKTREELGELSEQFYKYAVQLVEMLDMSVPAVAKL- 642
VV P P EV ++ + EE+ L+ + K ++ + + +V ++
Sbjct: 260 VVGPGPSPAGEVLMVEVENVAHEDFQVTEEVKALTAEIVKTIRDIIALNPLYRESVLQMM 319
Query: 643 ---RRLLDSLPREALPDILTSIIRTSNKEKLQILDAVSLEERFKMTIPLLVRQIEGLKLL 813
R++D+ L D+ ++ + E ++L+ ++ +R + LL ++ E KL
Sbjct: 320 QAGHRVVDN--PIYLSDMGAALTGAESHELQEVLEETNIPKRLYKALSLLKKEFELSKLQ 377
Query: 814 QKTRKHKQDDEKRVIAIRPIRRITHIPGALXXXXXXXXXXXIVMLEKKIRTSNMPEQAHK 993
Q+ + ++ K+ ++ I ++++ +P+
Sbjct: 378 QRLGREVEEKIKQTHRKYLLQEQLKIIKKELGLEKDDKDAIEEKFRERLKELVVPKHVMD 437
Query: 994 VCVKEIKRLKKMPQSMPEYALTRNYLELMVELPWNKSTTDRLDIRAARILLDNDHYAMEK 1173
V +E+ +L + E+ +TRNYL+ + +PW K + + LD+ A+ +L+ DHY ME
Sbjct: 438 VVDEELSKLGLLDNHSSEFNVTRNYLDWLTSIPWGKHSDENLDLARAQAVLEEDHYGMED 497
Query: 1174 LKKRVLEYLAVRQLKNNLKGPILCFVGPPGVGKTSVGRSVAKTLGREFHRIALGGVCDQS 1353
+KKR+LE++AV QL+ + +G ILCF GPPGVGKTS+ RS+A+ L RE+ R ++GG+ D +
Sbjct: 498 VKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIARSIARALNREYFRFSVGGMTDVA 557
Query: 1354 DIRGHRRTYVGSMPGRIINGLKTVGVNNPVFLLDEVDKLGKSLQGDPAAALLEVLDPEQN 1533
+I+GHRRTYVG+MPG+II LK NP+ L+DEVDK+G+ QGDP++ALLE+LDPEQN
Sbjct: 558 EIKGHRRTYVGAMPGKIIQCLKKTKTENPLVLIDEVDKIGRGYQGDPSSALLELLDPEQN 617
Query: 1534 HNFTDHYLNVAFDLSQVLFXXXXXXXXXXXXXLLDRMEIIQVPGYTQEEKIEIAHRHLIP 1713
NF DHYL+V DLS+VLF L DRME+I V GY +EK+ IA R+L+P
Sbjct: 618 ANFLDHYLDVPVDLSKVLFICTANITETIPEPLRDRMEMINVSGYVAQEKLAIAERYLVP 677
Query: 1714 KQLEQHGLTXXXXXXXXVTTLDVITRYTREAGVRSLDRKLGAICRAVAVKVAEGQHREAK 1893
+ GL +I +Y RE+GVR+L +++ + R A K+ G
Sbjct: 678 QARALCGLDESKAKLSSDVLTLLIKQYCRESGVRNLQKQVEKVLRKSAYKIVSG------ 731
Query: 1894 LDRPGVAEGEGGKEHILEDAKPDSIDDTTDLGLPPEMPILIDFHALKDILGPPMYEMEVS 2073
E + P++ L+D +G P++ +E
Sbjct: 732 -------------EAEFVEVTPEN---------------------LQDFVGKPVFTVERM 757
Query: 2074 ERLSQPGVAIGLAWTPLGGEIMFVEAS----------RMDGEXXXXXXXXXXDVMKESAH 2223
++ PGV +GLAWT +GG +FVE S + D + +VMKESA
Sbjct: 758 YDVTPPGVVMGLAWTAMGGSTLFVETSLRRPRDRDSDKGDKDGSLEVTGQLGEVMKESAR 817
Query: 2224 LAISWLRSNAKKYHLTNASGSFDLLENTDIHLHFPAGAVTKDGPSAGVTIATCLASLFSG 2403
+A ++ R+ ++ N L + IHLH P GA KDGPSAG TI T L SL
Sbjct: 818 IAYTFARAFLMQHDSAN-----KFLVTSHIHLHVPEGATPKDGPSAGCTIVTALLSLALD 872
Query: 2404 RLVRSDVAMTGEITLRGLVLPVGGIKDKVLAAHRAGLKHVIIPQRNEKDLEEIPGNVRQD 2583
R VR ++AMTGE++L G VLPVGGIK+K +AA RAG+ +++P N+KD ++ + +
Sbjct: 873 RPVRQNLAMTGEVSLTGKVLPVGGIKEKTIAAKRAGVTCIVLPAENKKDFYDLAAFITEG 932
Query: 2584 L 2586
L
Sbjct: 933 L 933
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 105,464,152
Number of extensions: 2853456
Number of successful extensions: 10260
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 10233
Number of HSP's successfully gapped: 4
Length of query: 935
Length of database: 17,681,374
Length adjustment: 112
Effective length of query: 823
Effective length of database: 13,975,518
Effective search space: 11501851314
Effective search space used: 11501851314
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-013312
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013312
(2807 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535313.2| PREDICTED: similar to peroxisomal lon protease ... 1475 0.0
Alignment gi|XP_854391.1| PREDICTED: similar to Lon protease homolog, mit... 409 e-114
Alignment gi|XP_868436.1| PREDICTED: similar to Lon protease homolog, mit... 409 e-114
Alignment gi|XP_863652.1| PREDICTED: similar to peroxisomal lon protease ... 86 3e-28
>ref|XP_535313.2| PREDICTED: similar to peroxisomal lon protease isoform 2 [Canis
familiaris].
Length = 852
Score = 1475 bits (3819), Expect = 0.0
Identities = 756/820 (92%), Positives = 768/820 (93%)
Frame = +1
Query: 139 VNPIQIPSRLPLLLTHEGVLLPGSTMRTSVDSPRNLQLVRSRLLKGTSLQSTILGVIPNT 318
V+PIQIP RLPLLLT+EGVLLPGSTMRTSVDS RNLQLVRSRLLKGTSLQSTILGVIPNT
Sbjct: 4 VSPIQIPRRLPLLLTNEGVLLPGSTMRTSVDSARNLQLVRSRLLKGTSLQSTILGVIPNT 63
Query: 319 PDPASDAQDLPPLHRIGTAALAVQVVGSNWPKPHYTLLITGLCRFQIVQVVKEKPYPVAE 498
PDPASDAQDLPPLHRIGTAALAVQVVGSNWPKPHYTLLITGLCRFQIVQV+KEKPYPVAE
Sbjct: 64 PDPASDAQDLPPLHRIGTAALAVQVVGSNWPKPHYTLLITGLCRFQIVQVLKEKPYPVAE 123
Query: 499 VEQLDRLEEFPNTCKTREELGELSEQFYKYAVQLVEMLDMSVPAVAKLRRLLDSLPREAL 678
VEQLDRLEEFPNTCKTREELGELSEQFYKYAVQLVEMLDMSVPAVAKLRRLLDSLPREAL
Sbjct: 124 VEQLDRLEEFPNTCKTREELGELSEQFYKYAVQLVEMLDMSVPAVAKLRRLLDSLPREAL 183
Query: 679 PDILTSIIRTSNKEKLQILDAVSLEERFKMTIPLLVRQIEGLKLLQKTRKHKQDDEKRVI 858
PDILTSIIRTSNKEKLQILDAVSLEERFKMTIPLLVRQIEGLKLLQKTRKHKQDD+KRVI
Sbjct: 184 PDILTSIIRTSNKEKLQILDAVSLEERFKMTIPLLVRQIEGLKLLQKTRKHKQDDDKRVI 243
Query: 859 AIRPIRRITHIPGALXXXXXXXXXXXIVMLEKKIRTSNMPEQAHKVCVKEIKRLKKMPQS 1038
AIRPIRRITHIPG L IVMLE+KIRTS+MPEQAHKVCVKEIKRLKKMPQS
Sbjct: 244 AIRPIRRITHIPGTLEDDDEDEDNDDIVMLERKIRTSSMPEQAHKVCVKEIKRLKKMPQS 303
Query: 1039 MPEYALTRNYLELMVELPWNKSTTDRLDIRAARILLDNDHYAMEKLKKRVLEYLAVRQLK 1218
MPEYALTRNYLELMVELPWNKSTTDRLDIRAARILLDNDHYAMEKLKKRVLEYLAVRQLK
Sbjct: 304 MPEYALTRNYLELMVELPWNKSTTDRLDIRAARILLDNDHYAMEKLKKRVLEYLAVRQLK 363
Query: 1219 NNLKGPILCFVGPPGVGKTSVGRSVAKTLGREFHRIALGGVCDQSDIRGHRRTYVGSMPG 1398
NNLKGPILCFVGPPGVGKTSVGRSVAKTLGREFHRIALGGVCDQSDIRGHRRTYVGSMPG
Sbjct: 364 NNLKGPILCFVGPPGVGKTSVGRSVAKTLGREFHRIALGGVCDQSDIRGHRRTYVGSMPG 423
Query: 1399 RIINGLKTVGVNNPVFLLDEVDKLGKSLQGDPAAALLEVLDPEQNHNFTDHYLNVAFDLS 1578
RIINGLKTVGVNNPVFLLDEVDKLGKSLQGDPAAALLEVLDPEQNHNFTDHYLNVAFDLS
Sbjct: 424 RIINGLKTVGVNNPVFLLDEVDKLGKSLQGDPAAALLEVLDPEQNHNFTDHYLNVAFDLS 483
Query: 1579 QVLFXXXXXXXXXXXXXLLDRMEIIQVPGYTQEEKIEIAHRHLIPKQLEQHGLTXXXXXX 1758
QVLF LLDRMEIIQVPGYTQEEKIEIAHRHLIPKQLEQHGLT
Sbjct: 484 QVLFIATANTTATIPPALLDRMEIIQVPGYTQEEKIEIAHRHLIPKQLEQHGLTPQQIQI 543
Query: 1759 XXVTTLDVITRYTREAGVRSLDRKLGAICRAVAVKVAEGQHREAKLDRPGVAEGEGGKEH 1938
VTTLD+ITRYTREAGVRSLDRK GAICRAVAVKVAEGQH+EAKLDR VAEGEGG+EH
Sbjct: 544 PQVTTLDIITRYTREAGVRSLDRKFGAICRAVAVKVAEGQHKEAKLDRYDVAEGEGGREH 603
Query: 1939 ILEDAKPDSIDDTTDLGLPPEMPILIDFHALKDILGPPMYEMEVSERLSQPGVAIGLAWT 2118
ILEDAKP+SI DTTDL LPPEMPILIDFHALKDILGPPMYEMEVSERLSQPGVAIGLAWT
Sbjct: 604 ILEDAKPESISDTTDLALPPEMPILIDFHALKDILGPPMYEMEVSERLSQPGVAIGLAWT 663
Query: 2119 PLGGEIMFVEASRMDGEXXXXXXXXXXDVMKESAHLAISWLRSNAKKYHLTNASGSFDLL 2298
PLGGEIMFVEASRMDGE DVMKESAHLAISWLRSNAKKYHLTNASGSFDLL
Sbjct: 664 PLGGEIMFVEASRMDGEGQLTLTGQLGDVMKESAHLAISWLRSNAKKYHLTNASGSFDLL 723
Query: 2299 ENTDIHLHFPAGAVTKDGPSAGVTIATCLASLFSGRLVRSDVAMTGEITLRGLVLPVGGI 2478
+NTDIHLHFPAGAVTKDGPSAGVTI TCLASLFSGRLVRSDVAMTGEITLRGLVLPVGGI
Sbjct: 724 DNTDIHLHFPAGAVTKDGPSAGVTIVTCLASLFSGRLVRSDVAMTGEITLRGLVLPVGGI 783
Query: 2479 KDKVLAAHRAGLKHVIIPQRNEKDLEEIPGNVRQDLSFVS 2598
KDKVLAAHRAGLK VIIPQRNEKDLEEIPGNVRQDLSFV+
Sbjct: 784 KDKVLAAHRAGLKRVIIPQRNEKDLEEIPGNVRQDLSFVT 823
Score = 60.5 bits (145), Expect = 9e-09
Identities = 28/31 (90%), Positives = 30/31 (96%)
Frame = +2
Query: 2591 LSASCLDEVLNAAFDGGFTVKTRPGLLNSKL 2683
++ASCLDEVLNAAFDGGFTV TRPGLLNSKL
Sbjct: 822 VTASCLDEVLNAAFDGGFTVSTRPGLLNSKL 852
>ref|XP_854391.1| PREDICTED: similar to Lon protease homolog, mitochondrial precursor
(Lon protease-like protein) (LONP) (LONHs) isoform 1
[Canis familiaris].
Length = 960
Score = 409 bits (1051), Expect = e-114
Identities = 233/646 (36%), Positives = 355/646 (54%), Gaps = 9/646 (1%)
Frame = +1
Query: 676 LPDILTSIIRTSNKEKLQILDAVSLEERFKMTIPLLVRQIEGLKLLQKTRKHKQDDEKRV 855
L D+ ++ + E +L+ ++ +R + LL ++ E KL Q+ + ++ K+
Sbjct: 332 LSDMGAALTGAESHELQDVLEETNIPKRLYKALSLLKKEFELSKLQQRLGREVEEKIKQT 391
Query: 856 IAIRPIRRITHIPGALXXXXXXXXXXXIVMLEKKIRTSNMPEQAHKVCVKEIKRLKKMPQ 1035
++ I ++++ +P+ V +E+ +L +
Sbjct: 392 HRKYLLQEQLKIIKKELGLEKDDKDAIEEKFRERLKELVVPKHVMDVVDEELSKLGLLDN 451
Query: 1036 SMPEYALTRNYLELMVELPWNKSTTDRLDIRAARILLDNDHYAMEKLKKRVLEYLAVRQL 1215
E+ +TRNYL+ + +PW K + + LD+ A+ +L+ DHY ME +KKR+LE++AV QL
Sbjct: 452 HSSEFNVTRNYLDWLTSIPWGKYSNENLDLARAQAVLEEDHYGMEDVKKRILEFIAVSQL 511
Query: 1216 KNNLKGPILCFVGPPGVGKTSVGRSVAKTLGREFHRIALGGVCDQSDIRGHRRTYVGSMP 1395
+ + +G ILCF GPPGVGKTS+ RS+A+ L RE+ R ++GG+ D ++I+GHRRTYVG+MP
Sbjct: 512 RGSTQGKILCFYGPPGVGKTSIARSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMP 571
Query: 1396 GRIINGLKTVGVNNPVFLLDEVDKLGKSLQGDPAAALLEVLDPEQNHNFTDHYLNVAFDL 1575
G+II LK NP+ L+DEVDK+G+ QGDP++ALLE+LDPEQN NF DHYL+V DL
Sbjct: 572 GKIIQCLKKTKTENPLILIDEVDKIGRGYQGDPSSALLELLDPEQNANFLDHYLDVPVDL 631
Query: 1576 SQVLFXXXXXXXXXXXXXLLDRMEIIQVPGYTQEEKIEIAHRHLIPKQLEQHGLTXXXXX 1755
S+VLF L DRME+I V GY +EK+ IA R+L+P+ GL
Sbjct: 632 SKVLFICTANVTETIPEPLRDRMEMINVSGYVAQEKLAIAERYLVPQARALCGLDESKAK 691
Query: 1756 XXXVTTLDVITRYTREAGVRSLDRKLGAICRAVAVKVAEGQHREAKLDRPGVAEGEGGKE 1935
+I +Y RE+GVR+L +++ + R A K+ G E
Sbjct: 692 LSSDVLTLLIKQYCRESGVRNLQKQVEKVLRKSAYKIVSG-------------------E 732
Query: 1936 HILEDAKPDSIDDTTDLGLPPEMPILIDFHALKDILGPPMYEMEVSERLSQPGVAIGLAW 2115
L + P++ L+D +G P++ +E ++ PGV +GLAW
Sbjct: 733 ADLVEVTPEN---------------------LQDFVGKPVFTVERMYDVTPPGVVMGLAW 771
Query: 2116 TPLGGEIMFVEA---------SRMDGEXXXXXXXXXXDVMKESAHLAISWLRSNAKKYHL 2268
T +GG +FVE S+ D + DVMKESA +A ++ R+ ++
Sbjct: 772 TAMGGSTLFVETSPRRPRDKDSKGDKDGSLEVTGQLGDVMKESARIAYTFARAFLMQHDP 831
Query: 2269 TNASGSFDLLENTDIHLHFPAGAVTKDGPSAGVTIATCLASLFSGRLVRSDVAMTGEITL 2448
TN D L + IHLH P GA KDGPSAG TI T L SL + VR ++AMTGE++L
Sbjct: 832 TN-----DYLVTSHIHLHVPEGATPKDGPSAGCTIVTALLSLAMDQPVRPNLAMTGEVSL 886
Query: 2449 RGLVLPVGGIKDKVLAAHRAGLKHVIIPQRNEKDLEEIPGNVRQDL 2586
G +LPVGGIK+K +AA RAG+ +++P N+KD ++ + + L
Sbjct: 887 TGKILPVGGIKEKTIAAKRAGVTCIVLPAENKKDFYDLAAFITEGL 932
>ref|XP_868436.1| PREDICTED: similar to Lon protease homolog, mitochondrial precursor
(Lon protease-like protein) (LONP) (LONHs) isoform 2
[Canis familiaris].
Length = 898
Score = 409 bits (1051), Expect = e-114
Identities = 233/646 (36%), Positives = 355/646 (54%), Gaps = 9/646 (1%)
Frame = +1
Query: 676 LPDILTSIIRTSNKEKLQILDAVSLEERFKMTIPLLVRQIEGLKLLQKTRKHKQDDEKRV 855
L D+ ++ + E +L+ ++ +R + LL ++ E KL Q+ + ++ K+
Sbjct: 270 LSDMGAALTGAESHELQDVLEETNIPKRLYKALSLLKKEFELSKLQQRLGREVEEKIKQT 329
Query: 856 IAIRPIRRITHIPGALXXXXXXXXXXXIVMLEKKIRTSNMPEQAHKVCVKEIKRLKKMPQ 1035
++ I ++++ +P+ V +E+ +L +
Sbjct: 330 HRKYLLQEQLKIIKKELGLEKDDKDAIEEKFRERLKELVVPKHVMDVVDEELSKLGLLDN 389
Query: 1036 SMPEYALTRNYLELMVELPWNKSTTDRLDIRAARILLDNDHYAMEKLKKRVLEYLAVRQL 1215
E+ +TRNYL+ + +PW K + + LD+ A+ +L+ DHY ME +KKR+LE++AV QL
Sbjct: 390 HSSEFNVTRNYLDWLTSIPWGKYSNENLDLARAQAVLEEDHYGMEDVKKRILEFIAVSQL 449
Query: 1216 KNNLKGPILCFVGPPGVGKTSVGRSVAKTLGREFHRIALGGVCDQSDIRGHRRTYVGSMP 1395
+ + +G ILCF GPPGVGKTS+ RS+A+ L RE+ R ++GG+ D ++I+GHRRTYVG+MP
Sbjct: 450 RGSTQGKILCFYGPPGVGKTSIARSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMP 509
Query: 1396 GRIINGLKTVGVNNPVFLLDEVDKLGKSLQGDPAAALLEVLDPEQNHNFTDHYLNVAFDL 1575
G+II LK NP+ L+DEVDK+G+ QGDP++ALLE+LDPEQN NF DHYL+V DL
Sbjct: 510 GKIIQCLKKTKTENPLILIDEVDKIGRGYQGDPSSALLELLDPEQNANFLDHYLDVPVDL 569
Query: 1576 SQVLFXXXXXXXXXXXXXLLDRMEIIQVPGYTQEEKIEIAHRHLIPKQLEQHGLTXXXXX 1755
S+VLF L DRME+I V GY +EK+ IA R+L+P+ GL
Sbjct: 570 SKVLFICTANVTETIPEPLRDRMEMINVSGYVAQEKLAIAERYLVPQARALCGLDESKAK 629
Query: 1756 XXXVTTLDVITRYTREAGVRSLDRKLGAICRAVAVKVAEGQHREAKLDRPGVAEGEGGKE 1935
+I +Y RE+GVR+L +++ + R A K+ G E
Sbjct: 630 LSSDVLTLLIKQYCRESGVRNLQKQVEKVLRKSAYKIVSG-------------------E 670
Query: 1936 HILEDAKPDSIDDTTDLGLPPEMPILIDFHALKDILGPPMYEMEVSERLSQPGVAIGLAW 2115
L + P++ L+D +G P++ +E ++ PGV +GLAW
Sbjct: 671 ADLVEVTPEN---------------------LQDFVGKPVFTVERMYDVTPPGVVMGLAW 709
Query: 2116 TPLGGEIMFVEA---------SRMDGEXXXXXXXXXXDVMKESAHLAISWLRSNAKKYHL 2268
T +GG +FVE S+ D + DVMKESA +A ++ R+ ++
Sbjct: 710 TAMGGSTLFVETSPRRPRDKDSKGDKDGSLEVTGQLGDVMKESARIAYTFARAFLMQHDP 769
Query: 2269 TNASGSFDLLENTDIHLHFPAGAVTKDGPSAGVTIATCLASLFSGRLVRSDVAMTGEITL 2448
TN D L + IHLH P GA KDGPSAG TI T L SL + VR ++AMTGE++L
Sbjct: 770 TN-----DYLVTSHIHLHVPEGATPKDGPSAGCTIVTALLSLAMDQPVRPNLAMTGEVSL 824
Query: 2449 RGLVLPVGGIKDKVLAAHRAGLKHVIIPQRNEKDLEEIPGNVRQDL 2586
G +LPVGGIK+K +AA RAG+ +++P N+KD ++ + + L
Sbjct: 825 TGKILPVGGIKEKTIAAKRAGVTCIVLPAENKKDFYDLAAFITEGL 870
>ref|XP_863652.1| PREDICTED: similar to peroxisomal lon protease isoform 3 [Canis
familiaris].
Length = 78
Score = 85.9 bits (211), Expect(2) = 3e-28
Identities = 42/44 (95%), Positives = 43/44 (97%)
Frame = +1
Query: 2467 VGGIKDKVLAAHRAGLKHVIIPQRNEKDLEEIPGNVRQDLSFVS 2598
VGGIKDKVLAAHRAGLK VIIPQRNEKDLEEIPGNVRQDLSFV+
Sbjct: 6 VGGIKDKVLAAHRAGLKRVIIPQRNEKDLEEIPGNVRQDLSFVT 49
Score = 60.5 bits (145), Expect(2) = 3e-28
Identities = 28/31 (90%), Positives = 30/31 (96%)
Frame = +2
Query: 2591 LSASCLDEVLNAAFDGGFTVKTRPGLLNSKL 2683
++ASCLDEVLNAAFDGGFTV TRPGLLNSKL
Sbjct: 48 VTASCLDEVLNAAFDGGFTVSTRPGLLNSKL 78
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 109,974,055
Number of extensions: 2948429
Number of successful extensions: 10733
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 10713
Number of HSP's successfully gapped: 8
Length of query: 935
Length of database: 18,874,504
Length adjustment: 112
Effective length of query: 823
Effective length of database: 15,140,872
Effective search space: 12460937656
Effective search space used: 12460937656
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013312
(2807 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355870.1| PREDICTED: lon protease homolog 2, peroxisom... 429 e-132
Alignment gi|NP_001230149.1| lon peptidase 1, mitochondrial [Sus scrofa]. 408 e-113
Alignment gi|XP_003127041.2| PREDICTED: lon protease homolog 2, peroxisom... 400 e-111
Alignment gi|XP_003354072.1| PREDICTED: lon protease homolog, mitochondri... 396 e-110
Alignment gi|XP_003355869.1| PREDICTED: lon protease homolog 2, peroxisom... 389 e-108
Alignment gi|XP_003355871.1| PREDICTED: lon protease homolog 2, peroxisom... 229 5e-60
>ref|XP_003355870.1| PREDICTED: lon protease homolog 2, peroxisomal-like [Sus scrofa].
Length = 265
Score = 429 bits (1102), Expect(2) = e-132
Identities = 216/234 (92%), Positives = 219/234 (93%)
Frame = +1
Query: 1897 DRPGVAEGEGGKEHILEDAKPDSIDDTTDLGLPPEMPILIDFHALKDILGPPMYEMEVSE 2076
D+ G +GGKEHILEDAKPDSIDDTTDLGLPPEMPILIDFHALKDILGPPMYEMEVSE
Sbjct: 3 DKHGKVNEQGGKEHILEDAKPDSIDDTTDLGLPPEMPILIDFHALKDILGPPMYEMEVSE 62
Query: 2077 RLSQPGVAIGLAWTPLGGEIMFVEASRMDGEXXXXXXXXXXDVMKESAHLAISWLRSNAK 2256
RLSQPGVAIGLAWTPLGGEIMFVEASRMDGE DVMKESAHLAISWLRSNAK
Sbjct: 63 RLSQPGVAIGLAWTPLGGEIMFVEASRMDGEGQLTLTGQLGDVMKESAHLAISWLRSNAK 122
Query: 2257 KYHLTNASGSFDLLENTDIHLHFPAGAVTKDGPSAGVTIATCLASLFSGRLVRSDVAMTG 2436
KYHLTNASGSFDLLENTDIHLHFPAGAVTKDGPSAGVTIATCLASLFSGRLVRSDVAMTG
Sbjct: 123 KYHLTNASGSFDLLENTDIHLHFPAGAVTKDGPSAGVTIATCLASLFSGRLVRSDVAMTG 182
Query: 2437 EITLRGLVLPVGGIKDKVLAAHRAGLKHVIIPQRNEKDLEEIPGNVRQDLSFVS 2598
EITLRGLVLPVGGIKDKVLAAHRAGLKHVIIPQRNEKDLEEIPGNVRQDLSFV+
Sbjct: 183 EITLRGLVLPVGGIKDKVLAAHRAGLKHVIIPQRNEKDLEEIPGNVRQDLSFVT 236
Score = 62.4 bits (150), Expect(2) = e-132
Identities = 29/31 (93%), Positives = 31/31 (100%)
Frame = +2
Query: 2591 LSASCLDEVLNAAFDGGFTVKTRPGLLNSKL 2683
++ASCLDEVLNAAFDGGFTVKTRPGLLNSKL
Sbjct: 235 VTASCLDEVLNAAFDGGFTVKTRPGLLNSKL 265
>ref|NP_001230149.1| lon peptidase 1, mitochondrial [Sus scrofa].
Length = 960
Score = 408 bits (1048), Expect = e-113
Identities = 247/730 (33%), Positives = 387/730 (53%), Gaps = 14/730 (1%)
Frame = +1
Query: 439 GLCRFQIVQVVKEKPYPVAEVEQLDRLEEFPNTCKTREELGELSEQFYKYAVQLVEMLDM 618
G + Q+ VV+ P EV ++ + EE+ L+ + K ++ + +
Sbjct: 250 GGAKQQVEVVVEPGLSPTGEVLMVEVENVVHEDFQVTEEVKALTAEIVKTIRDIIALNPL 309
Query: 619 SVPAVAKL----RRLLDSLPREALPDILTSIIRTSNKEKLQILDAVSLEERFKMTIPLLV 786
+V ++ R++D+ L D+ ++ + E +L+ ++ +R + LL
Sbjct: 310 YRESVLQMMQAGHRVVDN--PIYLSDMGAALTGAESHELQDVLEETNIPKRLYKALSLLK 367
Query: 787 RQIEGLKLLQKTRKHKQDDEKRVIAIRPIRRITHIPGALXXXXXXXXXXXIVMLEKKIRT 966
++ E KL Q+ + ++ K+ ++ I ++++
Sbjct: 368 KEFELSKLQQRLGREVEEKIKQTHRKYLLQEQLKIIKKELGLEKDDKDAIEEKFRERLKE 427
Query: 967 SNMPEQAHKVCVKEIKRLKKMPQSMPEYALTRNYLELMVELPWNKSTTDRLDIRAARILL 1146
+P+ V +E+ +L + E+ +TRNYL+ + +PW K + + LD+ A+ +L
Sbjct: 428 LVVPKHVMDVVDEELSKLGLLDNHSSEFNVTRNYLDWLTSIPWGKYSDENLDLARAQAVL 487
Query: 1147 DNDHYAMEKLKKRVLEYLAVRQLKNNLKGPILCFVGPPGVGKTSVGRSVAKTLGREFHRI 1326
+ DHY ME +KKR+LE++AV QL+ + +G ILCF GPPGVGKTS+ RS+A+ L RE+ R
Sbjct: 488 EEDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIARSIARALNREYFRF 547
Query: 1327 ALGGVCDQSDIRGHRRTYVGSMPGRIINGLKTVGVNNPVFLLDEVDKLGKSLQGDPAAAL 1506
++GG+ D ++I+GHRRTYVG+MPG+II LK NP+ L+DEVDK+G+ QGDP++AL
Sbjct: 548 SVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLVLIDEVDKIGRGYQGDPSSAL 607
Query: 1507 LEVLDPEQNHNFTDHYLNVAFDLSQVLFXXXXXXXXXXXXXLLDRMEIIQVPGYTQEEKI 1686
LE+LDPEQN NF DHYL+V DLS+VLF L DRME+I V GY +EK+
Sbjct: 608 LELLDPEQNANFLDHYLDVPVDLSKVLFICTANITETIPEPLRDRMEMINVSGYVAQEKL 667
Query: 1687 EIAHRHLIPKQLEQHGLTXXXXXXXXVTTLDVITRYTREAGVRSLDRKLGAICRAVAVKV 1866
IA R L+P+ Q GL +I +Y RE+GVR+L +++ + R A K+
Sbjct: 668 AIAERCLVPQARAQCGLDESKAKLSSDVLTLLIKQYCRESGVRNLQKQVEKVLRKSAYKI 727
Query: 1867 AEGQHREAKLDRPGVAEGEGGKEHILEDAKPDSIDDTTDLGLPPEMPILIDFHALKDILG 2046
G E + P++ L+D +G
Sbjct: 728 VSG-------------------EAEFVEVTPEN---------------------LQDFVG 747
Query: 2047 PPMYEMEVSERLSQPGVAIGLAWTPLGGEIMFVEAS----------RMDGEXXXXXXXXX 2196
P++ +E ++ PGV +GLAWT +GG +FVE S + D +
Sbjct: 748 KPVFTVERMYDVTPPGVVMGLAWTAMGGSTLFVETSLRRPRDRDSTKGDKDGSLEVTGQL 807
Query: 2197 XDVMKESAHLAISWLRSNAKKYHLTNASGSFDLLENTDIHLHFPAGAVTKDGPSAGVTIA 2376
+VMKESA +A ++ R+ ++ TN + L + IHLH P GA KDGPSAG TI
Sbjct: 808 GEVMKESARIAYTFARAFLMQHDPTN-----EYLVTSHIHLHVPEGATPKDGPSAGCTIV 862
Query: 2377 TCLASLFSGRLVRSDVAMTGEITLRGLVLPVGGIKDKVLAAHRAGLKHVIIPQRNEKDLE 2556
T L SL R VR ++AMTGE++L G VLPVGGIK+K +AA RAG+ +++P N+KD
Sbjct: 863 TALLSLAMDRPVRQNLAMTGEVSLTGKVLPVGGIKEKTIAAKRAGVTCIVLPAENKKDFY 922
Query: 2557 EIPGNVRQDL 2586
++ + + L
Sbjct: 923 DLAAFITEGL 932
>ref|XP_003127041.2| PREDICTED: lon protease homolog 2, peroxisomal-like [Sus scrofa].
Length = 340
Score = 400 bits (1029), Expect = e-111
Identities = 205/227 (90%), Positives = 208/227 (91%)
Frame = +1
Query: 691 TSIIRTSNKEKLQILDAVSLEERFKMTIPLLVRQIEGLKLLQKTRKHKQDDEKRVIAIRP 870
T+ + N +ILDAVSLEERFKMTIPLLVRQIEGLKLLQKTRKHKQDDEKRVIAIRP
Sbjct: 114 TAAPTSGNTSAKKILDAVSLEERFKMTIPLLVRQIEGLKLLQKTRKHKQDDEKRVIAIRP 173
Query: 871 IRRITHIPGALXXXXXXXXXXXIVMLEKKIRTSNMPEQAHKVCVKEIKRLKKMPQSMPEY 1050
IRRITHIPGAL IVMLEKKIRTSNMPEQAHKVCVKEIKRLKKMPQSMPEY
Sbjct: 174 IRRITHIPGALEDEDEDEDNDDIVMLEKKIRTSNMPEQAHKVCVKEIKRLKKMPQSMPEY 233
Query: 1051 ALTRNYLELMVELPWNKSTTDRLDIRAARILLDNDHYAMEKLKKRVLEYLAVRQLKNNLK 1230
ALTRNYLELMVELPWNKSTTDRLDIRAARILLDNDHYAMEKLKKRVLEYLAVRQLKNNLK
Sbjct: 234 ALTRNYLELMVELPWNKSTTDRLDIRAARILLDNDHYAMEKLKKRVLEYLAVRQLKNNLK 293
Query: 1231 GPILCFVGPPGVGKTSVGRSVAKTLGREFHRIALGGVCDQSDIRGHR 1371
GPILCFVGPPGVGKTSVGRSVAKTLGREFHRIALGGVCDQSDIRGHR
Sbjct: 294 GPILCFVGPPGVGKTSVGRSVAKTLGREFHRIALGGVCDQSDIRGHR 340
>ref|XP_003354072.1| PREDICTED: lon protease homolog, mitochondrial-like [Sus scrofa].
Length = 943
Score = 396 bits (1017), Expect = e-110
Identities = 242/705 (34%), Positives = 374/705 (53%), Gaps = 14/705 (1%)
Frame = +1
Query: 439 GLCRFQIVQVVKEKPYPVAEVEQLDRLEEFPNTCKTREELGELSEQFYKYAVQLVEMLDM 618
G + Q+ VV+ P EV ++ + EE+ L+ + K ++ + +
Sbjct: 250 GGAKQQVEVVVEPGLSPTGEVLMVEVENVVHEDFQVTEEVKALTAEIVKTIRDIIALNPL 309
Query: 619 SVPAVAKL----RRLLDSLPREALPDILTSIIRTSNKEKLQILDAVSLEERFKMTIPLLV 786
+V ++ R++D+ L D+ ++ + E +L+ ++ +R + LL
Sbjct: 310 YRESVLQMMQAGHRVVDN--PIYLSDMGAALTGAESHELQDVLEETNIPKRLYKALSLLK 367
Query: 787 RQIEGLKLLQKTRKHKQDDEKRVIAIRPIRRITHIPGALXXXXXXXXXXXIVMLEKKIRT 966
++ E KL Q+ + ++ K+ ++ I ++++
Sbjct: 368 KEFELSKLQQRLGREVEEKIKQTHRKYLLQEQLKIIKKELGLEKDDKDPIEEKFRERLKE 427
Query: 967 SNMPEQAHKVCVKEIKRLKKMPQSMPEYALTRNYLELMVELPWNKSTTDRLDIRAARILL 1146
+P+ V +E+ +L + E+ +TRNYL+ + +PW K + + LD+ A+ +L
Sbjct: 428 LVVPKHVMYVVDEELSKLGLLDSHSYEFNVTRNYLDWLTSIPWGKYSDENLDLARAQAVL 487
Query: 1147 DNDHYAMEKLKKRVLEYLAVRQLKNNLKGPILCFVGPPGVGKTSVGRSVAKTLGREFHRI 1326
+ DHY ME +KKR+LE++AV QL+ + +G ILCF GPPGVGKTS+ RS+A+ L RE+ R
Sbjct: 488 EEDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIARSIARALNREYFRF 547
Query: 1327 ALGGVCDQSDIRGHRRTYVGSMPGRIINGLKTVGVNNPVFLLDEVDKLGKSLQGDPAAAL 1506
++GG+ D ++I+GHRRTYVG+MPG+II LK NP+ L+DEVDK+G+ QGDP++AL
Sbjct: 548 SVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLVLIDEVDKIGRGYQGDPSSAL 607
Query: 1507 LEVLDPEQNHNFTDHYLNVAFDLSQVLFXXXXXXXXXXXXXLLDRMEIIQVPGYTQEEKI 1686
LE+LDPEQN NF DHYL+V DLS+VLF L DRME+I V GY +EK+
Sbjct: 608 LELLDPEQNANFLDHYLDVPVDLSKVLFICTANITETIPEPLRDRMEMINVSGYVAQEKL 667
Query: 1687 EIAHRHLIPKQLEQHGLTXXXXXXXXVTTLDVITRYTREAGVRSLDRKLGAICRAVAVKV 1866
IA R+L+P+ Q GL +I +Y RE+GVR+L +++ + R A K+
Sbjct: 668 AIAERYLVPQARAQCGLDESKAKLSSDVLTLLIKQYCRESGVRNLQKQVEKVLRKSAYKI 727
Query: 1867 AEGQHREAKLDRPGVAEGEGGKEHILEDAKPDSIDDTTDLGLPPEMPILIDFHALKDILG 2046
G E + P++ L+D +G
Sbjct: 728 VSG-------------------EAEFVEVTPEN---------------------LQDFVG 747
Query: 2047 PPMYEMEVSERLSQPGVAIGLAWTPLGGEIMFVEAS----------RMDGEXXXXXXXXX 2196
P++ +E ++ PGV +GLAWT +GG +FVE S + D +
Sbjct: 748 KPVFTVERMYDVTPPGVVMGLAWTAMGGSTLFVETSLRRPRDRDSTKGDKDGSLEVTGQL 807
Query: 2197 XDVMKESAHLAISWLRSNAKKYHLTNASGSFDLLENTDIHLHFPAGAVTKDGPSAGVTIA 2376
+VMKESA +A ++ R+ ++ TN + L + IHLH P GA KDGPSAG TI
Sbjct: 808 GEVMKESARIAYTFARAFLMQHDPTN-----EYLVTSHIHLHVPEGATPKDGPSAGCTIV 862
Query: 2377 TCLASLFSGRLVRSDVAMTGEITLRGLVLPVGGIKDKVLAAHRAG 2511
T L SL R VR ++AMTGE++L G VLPVGGIK+K +AA RAG
Sbjct: 863 TALLSLAMDRPVRQNLAMTGEVSLTGKVLPVGGIKEKTIAARRAG 907
>ref|XP_003355869.1| PREDICTED: lon protease homolog 2, peroxisomal-like [Sus scrofa].
Length = 246
Score = 389 bits (999), Expect = e-108
Identities = 198/198 (100%), Positives = 198/198 (100%)
Frame = +1
Query: 136 LVNPIQIPSRLPLLLTHEGVLLPGSTMRTSVDSPRNLQLVRSRLLKGTSLQSTILGVIPN 315
LVNPIQIPSRLPLLLTHEGVLLPGSTMRTSVDSPRNLQLVRSRLLKGTSLQSTILGVIPN
Sbjct: 3 LVNPIQIPSRLPLLLTHEGVLLPGSTMRTSVDSPRNLQLVRSRLLKGTSLQSTILGVIPN 62
Query: 316 TPDPASDAQDLPPLHRIGTAALAVQVVGSNWPKPHYTLLITGLCRFQIVQVVKEKPYPVA 495
TPDPASDAQDLPPLHRIGTAALAVQVVGSNWPKPHYTLLITGLCRFQIVQVVKEKPYPVA
Sbjct: 63 TPDPASDAQDLPPLHRIGTAALAVQVVGSNWPKPHYTLLITGLCRFQIVQVVKEKPYPVA 122
Query: 496 EVEQLDRLEEFPNTCKTREELGELSEQFYKYAVQLVEMLDMSVPAVAKLRRLLDSLPREA 675
EVEQLDRLEEFPNTCKTREELGELSEQFYKYAVQLVEMLDMSVPAVAKLRRLLDSLPREA
Sbjct: 123 EVEQLDRLEEFPNTCKTREELGELSEQFYKYAVQLVEMLDMSVPAVAKLRRLLDSLPREA 182
Query: 676 LPDILTSIIRTSNKEKLQ 729
LPDILTSIIRTSNKEKLQ
Sbjct: 183 LPDILTSIIRTSNKEKLQ 200
>ref|XP_003355871.1| PREDICTED: lon protease homolog 2, peroxisomal-like [Sus scrofa].
Length = 147
Score = 229 bits (585), Expect = 5e-60
Identities = 118/140 (84%), Positives = 119/140 (85%)
Frame = +1
Query: 1507 LEVLDPEQNHNFTDHYLNVAFDLSQVLFXXXXXXXXXXXXXLLDRMEIIQVPGYTQEEKI 1686
L+VLDPEQNHNFTDHYLNVAFDLSQVLF LLDRMEIIQVPGYTQEEKI
Sbjct: 7 LQVLDPEQNHNFTDHYLNVAFDLSQVLFIATANTTATIPPALLDRMEIIQVPGYTQEEKI 66
Query: 1687 EIAHRHLIPKQLEQHGLTXXXXXXXXVTTLDVITRYTREAGVRSLDRKLGAICRAVAVKV 1866
EIAHRHLIPKQLEQHGLT VTTLDVITRYTREAGVRSLDRKLGAICRAVAVKV
Sbjct: 67 EIAHRHLIPKQLEQHGLTPQQIQIPQVTTLDVITRYTREAGVRSLDRKLGAICRAVAVKV 126
Query: 1867 AEGQHREAKLDRPGVAEGEG 1926
AEGQHREAKLDRPGVAEGEG
Sbjct: 127 AEGQHREAKLDRPGVAEGEG 146
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 67,925,016
Number of extensions: 1837882
Number of successful extensions: 6670
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6654
Number of HSP's successfully gapped: 9
Length of query: 935
Length of database: 11,343,932
Length adjustment: 108
Effective length of query: 827
Effective length of database: 8,655,056
Effective search space: 7157731312
Effective search space used: 7157731312
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013312
(2807 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080103.1| lon protease homolog 2, peroxisomal isoform 1 [... 1439 0.0
Alignment gi|NP_001162063.1| lon protease homolog 2, peroxisomal isoform ... 679 0.0
Alignment gi|NP_083058.2| lon protease homolog, mitochondrial precursor [... 410 e-114
>ref|NP_080103.1| lon protease homolog 2, peroxisomal isoform 1 [Mus musculus].
Length = 852
Score = 1439 bits (3724), Expect = 0.0
Identities = 736/820 (89%), Positives = 757/820 (92%)
Frame = +1
Query: 139 VNPIQIPSRLPLLLTHEGVLLPGSTMRTSVDSPRNLQLVRSRLLKGTSLQSTILGVIPNT 318
V+PIQIPSRLPLLLTHE VLLPGSTMRTSVD+ RNLQLVRSRLLKGTSLQSTILGVIPNT
Sbjct: 4 VSPIQIPSRLPLLLTHESVLLPGSTMRTSVDTARNLQLVRSRLLKGTSLQSTILGVIPNT 63
Query: 319 PDPASDAQDLPPLHRIGTAALAVQVVGSNWPKPHYTLLITGLCRFQIVQVVKEKPYPVAE 498
PDPASD QDLPPLHRIGTAALAVQVVGSNWPKPHYTLLITGLCRFQIVQV+KEKPYPVAE
Sbjct: 64 PDPASDTQDLPPLHRIGTAALAVQVVGSNWPKPHYTLLITGLCRFQIVQVLKEKPYPVAE 123
Query: 499 VEQLDRLEEFPNTCKTREELGELSEQFYKYAVQLVEMLDMSVPAVAKLRRLLDSLPREAL 678
VEQLDRLEEFPN CK+REELGELSEQFY+YAVQLVEMLDMSVPAVAKLRRLLD+LPREAL
Sbjct: 124 VEQLDRLEEFPNICKSREELGELSEQFYRYAVQLVEMLDMSVPAVAKLRRLLDNLPREAL 183
Query: 679 PDILTSIIRTSNKEKLQILDAVSLEERFKMTIPLLVRQIEGLKLLQKTRKHKQDDEKRVI 858
PDILTSIIRTSNKEKLQILDAVSLE+RFKMTIPLLVRQIEGLKLLQKTRK KQDD+KRVI
Sbjct: 184 PDILTSIIRTSNKEKLQILDAVSLEDRFKMTIPLLVRQIEGLKLLQKTRKPKQDDDKRVI 243
Query: 859 AIRPIRRITHIPGALXXXXXXXXXXXIVMLEKKIRTSNMPEQAHKVCVKEIKRLKKMPQS 1038
AIRPIRRI HIPG L IVMLEKKIRTS+MPEQAHKVCVKEIKRLKKMPQS
Sbjct: 244 AIRPIRRIPHIPGTLEDEEEEEDNDDIVMLEKKIRTSSMPEQAHKVCVKEIKRLKKMPQS 303
Query: 1039 MPEYALTRNYLELMVELPWNKSTTDRLDIRAARILLDNDHYAMEKLKKRVLEYLAVRQLK 1218
MPEYALTRNYLELMVELPWNKSTTDRLDIRAARILLDNDHYAMEKLK+RVLEYLAVRQLK
Sbjct: 304 MPEYALTRNYLELMVELPWNKSTTDRLDIRAARILLDNDHYAMEKLKRRVLEYLAVRQLK 363
Query: 1219 NNLKGPILCFVGPPGVGKTSVGRSVAKTLGREFHRIALGGVCDQSDIRGHRRTYVGSMPG 1398
NNLKGPILCFVGPPGVGKTSVGRSVAKTLGREFHRIALGGVCDQSDIRGHRRTYVGSMPG
Sbjct: 364 NNLKGPILCFVGPPGVGKTSVGRSVAKTLGREFHRIALGGVCDQSDIRGHRRTYVGSMPG 423
Query: 1399 RIINGLKTVGVNNPVFLLDEVDKLGKSLQGDPAAALLEVLDPEQNHNFTDHYLNVAFDLS 1578
RIINGLKTVGVNNPVFLLDEVDKLGKSLQGDPAAALLEVLDPEQNHNFTDHYLNVAFDLS
Sbjct: 424 RIINGLKTVGVNNPVFLLDEVDKLGKSLQGDPAAALLEVLDPEQNHNFTDHYLNVAFDLS 483
Query: 1579 QVLFXXXXXXXXXXXXXLLDRMEIIQVPGYTQEEKIEIAHRHLIPKQLEQHGLTXXXXXX 1758
QVLF LLDRMEIIQVPGYTQEEKIEIAHRHLIPKQLEQHGLT
Sbjct: 484 QVLFIATANTTATIPPALLDRMEIIQVPGYTQEEKIEIAHRHLIPKQLEQHGLTPQQIQI 543
Query: 1759 XXVTTLDVITRYTREAGVRSLDRKLGAICRAVAVKVAEGQHREAKLDRPGVAEGEGGKEH 1938
TTL +ITRYTREAGVRSLDRK GAICRAVAVKVAEGQH+EAKLDR VA+GEG KEH
Sbjct: 544 PQHTTLAIITRYTREAGVRSLDRKFGAICRAVAVKVAEGQHKEAKLDRSDVADGEGCKEH 603
Query: 1939 ILEDAKPDSIDDTTDLGLPPEMPILIDFHALKDILGPPMYEMEVSERLSQPGVAIGLAWT 2118
+LEDAKP+SI DT DL LPPEMPILID HALKDILGPP+YE+EVSERLSQPGVAIGLAWT
Sbjct: 604 VLEDAKPESISDTADLALPPEMPILIDSHALKDILGPPLYELEVSERLSQPGVAIGLAWT 663
Query: 2119 PLGGEIMFVEASRMDGEXXXXXXXXXXDVMKESAHLAISWLRSNAKKYHLTNASGSFDLL 2298
PLGG+IMFVEASRMDGE DVMKESAHLAISWLRSNAKKYHLTNA GSFDLL
Sbjct: 664 PLGGKIMFVEASRMDGEGQLTLTGQLGDVMKESAHLAISWLRSNAKKYHLTNAFGSFDLL 723
Query: 2299 ENTDIHLHFPAGAVTKDGPSAGVTIATCLASLFSGRLVRSDVAMTGEITLRGLVLPVGGI 2478
+NTDIHLHFPAGAVTKDGPSAGVTI TCLASLFSGRLVRSDVAMTGEITLRGLVLPVGGI
Sbjct: 724 DNTDIHLHFPAGAVTKDGPSAGVTIVTCLASLFSGRLVRSDVAMTGEITLRGLVLPVGGI 783
Query: 2479 KDKVLAAHRAGLKHVIIPQRNEKDLEEIPGNVRQDLSFVS 2598
KDKVLAAHRAGLK +IIPQRNEKDLEEIP NVRQDLSFV+
Sbjct: 784 KDKVLAAHRAGLKQIIIPQRNEKDLEEIPSNVRQDLSFVT 823
Score = 57.4 bits (137), Expect = 6e-08
Identities = 26/31 (83%), Positives = 30/31 (96%)
Frame = +2
Query: 2591 LSASCLDEVLNAAFDGGFTVKTRPGLLNSKL 2683
++ASCLDEVLNAAFDGGF VKTRPGL++SKL
Sbjct: 822 VTASCLDEVLNAAFDGGFPVKTRPGLIDSKL 852
>ref|NP_001162063.1| lon protease homolog 2, peroxisomal isoform 2 [Mus musculus].
Length = 432
Score = 679 bits (1753), Expect(2) = 0.0
Identities = 347/403 (86%), Positives = 358/403 (88%)
Frame = +1
Query: 1390 MPGRIINGLKTVGVNNPVFLLDEVDKLGKSLQGDPAAALLEVLDPEQNHNFTDHYLNVAF 1569
MPGRIINGLKTVGVNNPVFLLDEVDKLGKSLQGDPAAALLEVLDPEQNHNFTDHYLNVAF
Sbjct: 1 MPGRIINGLKTVGVNNPVFLLDEVDKLGKSLQGDPAAALLEVLDPEQNHNFTDHYLNVAF 60
Query: 1570 DLSQVLFXXXXXXXXXXXXXLLDRMEIIQVPGYTQEEKIEIAHRHLIPKQLEQHGLTXXX 1749
DLSQVLF LLDRMEIIQVPGYTQEEKIEIAHRHLIPKQLEQHGLT
Sbjct: 61 DLSQVLFIATANTTATIPPALLDRMEIIQVPGYTQEEKIEIAHRHLIPKQLEQHGLTPQQ 120
Query: 1750 XXXXXVTTLDVITRYTREAGVRSLDRKLGAICRAVAVKVAEGQHREAKLDRPGVAEGEGG 1929
TTL +ITRYTREAGVRSLDRK GAICRAVAVKVAEGQH+EAKLDR VA+GEG
Sbjct: 121 IQIPQHTTLAIITRYTREAGVRSLDRKFGAICRAVAVKVAEGQHKEAKLDRSDVADGEGC 180
Query: 1930 KEHILEDAKPDSIDDTTDLGLPPEMPILIDFHALKDILGPPMYEMEVSERLSQPGVAIGL 2109
KEH+LEDAKP+SI DT DL LPPEMPILID HALKDILGPP+YE+EVSERLSQPGVAIGL
Sbjct: 181 KEHVLEDAKPESISDTADLALPPEMPILIDSHALKDILGPPLYELEVSERLSQPGVAIGL 240
Query: 2110 AWTPLGGEIMFVEASRMDGEXXXXXXXXXXDVMKESAHLAISWLRSNAKKYHLTNASGSF 2289
AWTPLGG+IMFVEASRMDGE DVMKESAHLAISWLRSNAKKYHLTNA GSF
Sbjct: 241 AWTPLGGKIMFVEASRMDGEGQLTLTGQLGDVMKESAHLAISWLRSNAKKYHLTNAFGSF 300
Query: 2290 DLLENTDIHLHFPAGAVTKDGPSAGVTIATCLASLFSGRLVRSDVAMTGEITLRGLVLPV 2469
DLL+NTDIHLHFPAGAVTKDGPSAGVTI TCLASLFSGRLVRSDVAMTGEITLRGLVLPV
Sbjct: 301 DLLDNTDIHLHFPAGAVTKDGPSAGVTIVTCLASLFSGRLVRSDVAMTGEITLRGLVLPV 360
Query: 2470 GGIKDKVLAAHRAGLKHVIIPQRNEKDLEEIPGNVRQDLSFVS 2598
GGIKDKVLAAHRAGLK +IIPQRNEKDLEEIP NVRQDLSFV+
Sbjct: 361 GGIKDKVLAAHRAGLKQIIIPQRNEKDLEEIPSNVRQDLSFVT 403
Score = 57.4 bits (137), Expect(2) = 0.0
Identities = 26/31 (83%), Positives = 30/31 (96%)
Frame = +2
Query: 2591 LSASCLDEVLNAAFDGGFTVKTRPGLLNSKL 2683
++ASCLDEVLNAAFDGGF VKTRPGL++SKL
Sbjct: 402 VTASCLDEVLNAAFDGGFPVKTRPGLIDSKL 432
>ref|NP_083058.2| lon protease homolog, mitochondrial precursor [Mus musculus].
Length = 949
Score = 410 bits (1054), Expect = e-114
Identities = 235/646 (36%), Positives = 352/646 (54%), Gaps = 9/646 (1%)
Frame = +1
Query: 676 LPDILTSIIRTSNKEKLQILDAVSLEERFKMTIPLLVRQIEGLKLLQKTRKHKQDDEKRV 855
L D+ ++ + E +L+ ++ +R + LL ++ E KL Q+ + ++ K+
Sbjct: 320 LSDMGAALTGAESHELQDVLEETNILKRLYKALSLLKKEFELSKLQQRLGREVEEKIKQT 379
Query: 856 IAIRPIRRITHIPGALXXXXXXXXXXXIVMLEKKIRTSNMPEQAHKVCVKEIKRLKKMPQ 1035
++ I +++R +P+ V +E+ +L +
Sbjct: 380 HRKYLLQEQLKIIKKELGLEKDDKDAIEEKFRERLRELVVPKHVMDVVDEELSKLALLDN 439
Query: 1036 SMPEYALTRNYLELMVELPWNKSTTDRLDIRAARILLDNDHYAMEKLKKRVLEYLAVRQL 1215
E+ +TRNYL+ + +PW + + + LD+ A+ +L+ DHY ME +KKRVLE++AV QL
Sbjct: 440 HSSEFNVTRNYLDWLTSIPWGRQSDENLDLARAQAVLEEDHYGMEDVKKRVLEFIAVSQL 499
Query: 1216 KNNLKGPILCFVGPPGVGKTSVGRSVAKTLGREFHRIALGGVCDQSDIRGHRRTYVGSMP 1395
+ + +G ILCF GPPGVGKTS+ RS+A+ LGRE+ R ++GG+ D ++I+GHRRTYVG+MP
Sbjct: 500 RGSTQGKILCFHGPPGVGKTSIARSIARALGREYFRFSVGGMTDVAEIKGHRRTYVGAMP 559
Query: 1396 GRIINGLKTVGVNNPVFLLDEVDKLGKSLQGDPAAALLEVLDPEQNHNFTDHYLNVAFDL 1575
G+II LK NP+ L+DEVDK+G+ QGDP++ALLE+LDPEQN NF DHYL+V DL
Sbjct: 560 GKIIQCLKKTKTENPLVLIDEVDKIGRGYQGDPSSALLELLDPEQNANFLDHYLDVPVDL 619
Query: 1576 SQVLFXXXXXXXXXXXXXLLDRMEIIQVPGYTQEEKIEIAHRHLIPKQLEQHGLTXXXXX 1755
S+VLF L DRME+I V GY +EK+ IA R+L+P+ GL
Sbjct: 620 SKVLFICTANVIDTIPEPLRDRMEMINVSGYVAQEKLAIAERYLVPQARTLCGLDESKAQ 679
Query: 1756 XXXVTTLDVITRYTREAGVRSLDRKLGAICRAVAVKVAEGQHREAKLDRPGVAEGEGGKE 1935
+I +Y RE+GVR+L +++ + R A K+ G+ + +
Sbjct: 680 LSAAVLTLLIKQYCRESGVRNLQKQVEKVLRKAAYKIVSGEAQTVQ-------------- 725
Query: 1936 HILEDAKPDSIDDTTDLGLPPEMPILIDFHALKDILGPPMYEMEVSERLSQPGVAIGLAW 2115
+ PE L+D +G P++ +E ++ PGV +GLAW
Sbjct: 726 ------------------VTPE--------NLQDFVGKPVFTVERMYEVTPPGVVMGLAW 759
Query: 2116 TPLGGEIMFVE---------ASRMDGEXXXXXXXXXXDVMKESAHLAISWLRSNAKKYHL 2268
T +GG +FVE S+ D + DVMKESA +A ++ R+ L
Sbjct: 760 TAMGGSTLFVETSLRRPQPSGSKEDKDGSLEVTGQLGDVMKESARIAYTYARA-----FL 814
Query: 2269 TNASGSFDLLENTDIHLHFPAGAVTKDGPSAGVTIATCLASLFSGRLVRSDVAMTGEITL 2448
D L + IHLH P GA KDGPSAG TI T L SL G+ V ++AMTGE++L
Sbjct: 815 MEQDPENDFLVTSHIHLHVPEGATPKDGPSAGCTIVTALLSLALGQPVLQNLAMTGEVSL 874
Query: 2449 RGLVLPVGGIKDKVLAAHRAGLKHVIIPQRNEKDLEEIPGNVRQDL 2586
G VLPVGGIK+K +AA RAG+ +I+P N KD ++ + + L
Sbjct: 875 TGKVLPVGGIKEKTIAAKRAGVTCIILPAENRKDYSDLAPFITEGL 920
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 91,578,278
Number of extensions: 2424212
Number of successful extensions: 8331
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8302
Number of HSP's successfully gapped: 6
Length of query: 935
Length of database: 15,617,559
Length adjustment: 111
Effective length of query: 824
Effective length of database: 12,283,563
Effective search space: 10121655912
Effective search space used: 10121655912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013312
(2807 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_113678.2| lon protease homolog 2, peroxisomal [Homo sapie... 1453 0.0
Alignment gi|NP_004784.2| lon protease homolog, mitochondrial precursor [... 410 e-114
>ref|NP_113678.2| lon protease homolog 2, peroxisomal [Homo sapiens].
Length = 852
Score = 1453 bits (3761), Expect = 0.0
Identities = 747/820 (91%), Positives = 760/820 (92%)
Frame = +1
Query: 139 VNPIQIPSRLPLLLTHEGVLLPGSTMRTSVDSPRNLQLVRSRLLKGTSLQSTILGVIPNT 318
V+PIQIPSRLPLLLTHEGVLLPGSTMRTSVDS RNLQLVRSRLLKGTSLQSTILGVIPNT
Sbjct: 4 VSPIQIPSRLPLLLTHEGVLLPGSTMRTSVDSARNLQLVRSRLLKGTSLQSTILGVIPNT 63
Query: 319 PDPASDAQDLPPLHRIGTAALAVQVVGSNWPKPHYTLLITGLCRFQIVQVVKEKPYPVAE 498
PDPASDAQDLPPLHRIGTAALAVQVVGSNWPKPHYTLLITGLCRFQIVQV+KEKPYP+AE
Sbjct: 64 PDPASDAQDLPPLHRIGTAALAVQVVGSNWPKPHYTLLITGLCRFQIVQVLKEKPYPIAE 123
Query: 499 VEQLDRLEEFPNTCKTREELGELSEQFYKYAVQLVEMLDMSVPAVAKLRRLLDSLPREAL 678
VEQLDRLEEFPNTCK REELGELSEQFYKYAVQLVEMLDMSVPAVAKLRRLLDSLPREAL
Sbjct: 124 VEQLDRLEEFPNTCKMREELGELSEQFYKYAVQLVEMLDMSVPAVAKLRRLLDSLPREAL 183
Query: 679 PDILTSIIRTSNKEKLQILDAVSLEERFKMTIPLLVRQIEGLKLLQKTRKHKQDDEKRVI 858
PDILTSIIRTSNKEKLQILDAVSLEERFKMTIPLLVRQIEGLKLLQKTRK KQDD+KRVI
Sbjct: 184 PDILTSIIRTSNKEKLQILDAVSLEERFKMTIPLLVRQIEGLKLLQKTRKPKQDDDKRVI 243
Query: 859 AIRPIRRITHIPGALXXXXXXXXXXXIVMLEKKIRTSNMPEQAHKVCVKEIKRLKKMPQS 1038
AIRPIRRITHI G L IVMLEKKIRTS+MPEQAHKVCVKEIKRLKKMPQS
Sbjct: 244 AIRPIRRITHISGTLEDEDEDEDNDDIVMLEKKIRTSSMPEQAHKVCVKEIKRLKKMPQS 303
Query: 1039 MPEYALTRNYLELMVELPWNKSTTDRLDIRAARILLDNDHYAMEKLKKRVLEYLAVRQLK 1218
MPEYALTRNYLELMVELPWNKSTTDRLDIRAARILLDNDHYAMEKLKKRVLEYLAVRQLK
Sbjct: 304 MPEYALTRNYLELMVELPWNKSTTDRLDIRAARILLDNDHYAMEKLKKRVLEYLAVRQLK 363
Query: 1219 NNLKGPILCFVGPPGVGKTSVGRSVAKTLGREFHRIALGGVCDQSDIRGHRRTYVGSMPG 1398
NNLKGPILCFVGPPGVGKTSVGRSVAKTLGREFHRIALGGVCDQSDIRGHRRTYVGSMPG
Sbjct: 364 NNLKGPILCFVGPPGVGKTSVGRSVAKTLGREFHRIALGGVCDQSDIRGHRRTYVGSMPG 423
Query: 1399 RIINGLKTVGVNNPVFLLDEVDKLGKSLQGDPAAALLEVLDPEQNHNFTDHYLNVAFDLS 1578
RIINGLKTVGVNNPVFLLDEVDKLGKSLQGDPAAALLEVLDPEQNHNFTDHYLNVAFDLS
Sbjct: 424 RIINGLKTVGVNNPVFLLDEVDKLGKSLQGDPAAALLEVLDPEQNHNFTDHYLNVAFDLS 483
Query: 1579 QVLFXXXXXXXXXXXXXLLDRMEIIQVPGYTQEEKIEIAHRHLIPKQLEQHGLTXXXXXX 1758
QVLF LLDRMEIIQVPGYTQEEKIEIAHRHLIPKQLEQHGLT
Sbjct: 484 QVLFIATANTTATIPAALLDRMEIIQVPGYTQEEKIEIAHRHLIPKQLEQHGLTPQQIQI 543
Query: 1759 XXVTTLDVITRYTREAGVRSLDRKLGAICRAVAVKVAEGQHREAKLDRPGVAEGEGGKEH 1938
VTTLD+ITRYTREAGVRSLDRKLGAICRAVAVKVAEGQH+EAKLDR V E EG +EH
Sbjct: 544 PQVTTLDIITRYTREAGVRSLDRKLGAICRAVAVKVAEGQHKEAKLDRSDVTEREGCREH 603
Query: 1939 ILEDAKPDSIDDTTDLGLPPEMPILIDFHALKDILGPPMYEMEVSERLSQPGVAIGLAWT 2118
ILED KP+SI DTTDL LPPEMPILIDFHALKDILGPPMYEMEVS+RLSQPGVAIGLAWT
Sbjct: 604 ILEDEKPESISDTTDLALPPEMPILIDFHALKDILGPPMYEMEVSQRLSQPGVAIGLAWT 663
Query: 2119 PLGGEIMFVEASRMDGEXXXXXXXXXXDVMKESAHLAISWLRSNAKKYHLTNASGSFDLL 2298
PLGGEIMFVEASRMDGE DVMKESAHLAISWLRSNAKKY LTNA GSFDLL
Sbjct: 664 PLGGEIMFVEASRMDGEGQLTLTGQLGDVMKESAHLAISWLRSNAKKYQLTNAFGSFDLL 723
Query: 2299 ENTDIHLHFPAGAVTKDGPSAGVTIATCLASLFSGRLVRSDVAMTGEITLRGLVLPVGGI 2478
+NTDIHLHFPAGAVTKDGPSAGVTI TCLASLFSGRLVRSDVAMTGEITLRGLVLPVGGI
Sbjct: 724 DNTDIHLHFPAGAVTKDGPSAGVTIVTCLASLFSGRLVRSDVAMTGEITLRGLVLPVGGI 783
Query: 2479 KDKVLAAHRAGLKHVIIPQRNEKDLEEIPGNVRQDLSFVS 2598
KDKVLAAHRAGLK VIIP+RNEKDLE IPGNVRQDLSFV+
Sbjct: 784 KDKVLAAHRAGLKQVIIPRRNEKDLEGIPGNVRQDLSFVT 823
Score = 62.4 bits (150), Expect = 2e-09
Identities = 29/31 (93%), Positives = 31/31 (100%)
Frame = +2
Query: 2591 LSASCLDEVLNAAFDGGFTVKTRPGLLNSKL 2683
++ASCLDEVLNAAFDGGFTVKTRPGLLNSKL
Sbjct: 822 VTASCLDEVLNAAFDGGFTVKTRPGLLNSKL 852
>ref|NP_004784.2| lon protease homolog, mitochondrial precursor [Homo sapiens].
Length = 959
Score = 410 bits (1053), Expect = e-114
Identities = 232/646 (35%), Positives = 356/646 (55%), Gaps = 9/646 (1%)
Frame = +1
Query: 676 LPDILTSIIRTSNKEKLQILDAVSLEERFKMTIPLLVRQIEGLKLLQKTRKHKQDDEKRV 855
L D+ ++ + E +L+ ++ +R + LL ++ E KL Q+ + ++ K+
Sbjct: 331 LSDMGAALTGAESHELQDVLEETNIPKRLYKALSLLKKEFELSKLQQRLGREVEEKIKQT 390
Query: 856 IAIRPIRRITHIPGALXXXXXXXXXXXIVMLEKKIRTSNMPEQAHKVCVKEIKRLKKMPQ 1035
++ I ++++ +P+ V +E+ +L +
Sbjct: 391 HRKYLLQEQLKIIKKELGLEKDDKDAIEEKFRERLKELVVPKHVMDVVDEELSKLGLLDN 450
Query: 1036 SMPEYALTRNYLELMVELPWNKSTTDRLDIRAARILLDNDHYAMEKLKKRVLEYLAVRQL 1215
E+ +TRNYL+ + +PW K + + LD+ A+ +L+ DHY ME +KKR+LE++AV QL
Sbjct: 451 HSSEFNVTRNYLDWLTSIPWGKYSNENLDLARAQAVLEEDHYGMEDVKKRILEFIAVSQL 510
Query: 1216 KNNLKGPILCFVGPPGVGKTSVGRSVAKTLGREFHRIALGGVCDQSDIRGHRRTYVGSMP 1395
+ + +G ILCF GPPGVGKTS+ RS+A+ L RE+ R ++GG+ D ++I+GHRRTYVG+MP
Sbjct: 511 RGSTQGKILCFYGPPGVGKTSIARSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMP 570
Query: 1396 GRIINGLKTVGVNNPVFLLDEVDKLGKSLQGDPAAALLEVLDPEQNHNFTDHYLNVAFDL 1575
G+II LK NP+ L+DEVDK+G+ QGDP++ALLE+LDPEQN NF DHYL+V DL
Sbjct: 571 GKIIQCLKKTKTENPLILIDEVDKIGRGYQGDPSSALLELLDPEQNANFLDHYLDVPVDL 630
Query: 1576 SQVLFXXXXXXXXXXXXXLLDRMEIIQVPGYTQEEKIEIAHRHLIPKQLEQHGLTXXXXX 1755
S+VLF L DRME+I V GY +EK+ IA R+L+P+ GL
Sbjct: 631 SKVLFICTANVTDTIPEPLRDRMEMINVSGYVAQEKLAIAERYLVPQARALCGLDESKAK 690
Query: 1756 XXXVTTLDVITRYTREAGVRSLDRKLGAICRAVAVKVAEGQHREAKLDRPGVAEGEGGKE 1935
+I +Y RE+GVR+L +++ + R A K+ G+
Sbjct: 691 LSSDVLTLLIKQYCRESGVRNLQKQVEKVLRKSAYKIVSGE------------------- 731
Query: 1936 HILEDAKPDSIDDTTDLGLPPEMPILIDFHALKDILGPPMYEMEVSERLSQPGVAIGLAW 2115
+S++ T + L+D +G P++ +E ++ PGV +GLAW
Sbjct: 732 -------AESVEVTPE--------------NLQDFVGKPVFTVERMYDVTPPGVVMGLAW 770
Query: 2116 TPLGGEIMFVEAS---------RMDGEXXXXXXXXXXDVMKESAHLAISWLRSNAKKYHL 2268
T +GG +FVE S + D + +VMKESA +A ++ R+ ++
Sbjct: 771 TAMGGSTLFVETSLRRPQDKDAKGDKDGSLEVTGQLGEVMKESARIAYTFARAFLMQHAP 830
Query: 2269 TNASGSFDLLENTDIHLHFPAGAVTKDGPSAGVTIATCLASLFSGRLVRSDVAMTGEITL 2448
N D L + IHLH P GA KDGPSAG TI T L SL GR VR ++AMTGE++L
Sbjct: 831 AN-----DYLVTSHIHLHVPEGATPKDGPSAGCTIVTALLSLAMGRPVRQNLAMTGEVSL 885
Query: 2449 RGLVLPVGGIKDKVLAAHRAGLKHVIIPQRNEKDLEEIPGNVRQDL 2586
G +LPVGGIK+K +AA RAG+ +++P N+KD ++ + + L
Sbjct: 886 TGKILPVGGIKEKTIAAKRAGVTCIVLPAENKKDFYDLAAFITEGL 931
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 107,997,347
Number of extensions: 2896419
Number of successful extensions: 10007
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9974
Number of HSP's successfully gapped: 4
Length of query: 935
Length of database: 18,297,164
Length adjustment: 112
Effective length of query: 823
Effective length of database: 14,605,196
Effective search space: 12020076308
Effective search space used: 12020076308
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013312
(2807 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 720 0.0
Sscrofa_Chr02 84 5e-13
>Sscrofa_Chr06
|| Length = 157765593
Score = 720 bits (363), Expect = 0.0
Identities = 363/363 (100%)
Strand = Plus / Minus
Query: 1 ggcgggcgagagcgcgggccggaagcggcggcgtgccggggggctagagctgctgttgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31827130 ggcgggcgagagcgcgggccggaagcggcggcgtgccggggggctagagctgctgttgcc 31827071
Query: 61 gccggataggccgcgcggggcaccgcgtctttctcctgaagccgctcctcagcgtggagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31827070 gccggataggccgcgcggggcaccgcgtctttctcctgaagccgctcctcagcgtggagg 31827011
Query: 121 gcagtcgccatgtcgttggtgaaccccatccagatccccagccgcctcccgctgctgctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31827010 gcagtcgccatgtcgttggtgaaccccatccagatccccagccgcctcccgctgctgctc 31826951
Query: 181 acgcatgagggcgtgctgctgcccggctccaccatgcgcaccagcgtggactcgccccgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31826950 acgcatgagggcgtgctgctgcccggctccaccatgcgcaccagcgtggactcgccccgc 31826891
Query: 241 aacctgcagctggtgcggagccggctgctcaagggcacatcgctgcagagcaccatcctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31826890 aacctgcagctggtgcggagccggctgctcaagggcacatcgctgcagagcaccatcctg 31826831
Query: 301 ggcgtcattcccaacacacccgacccggccagcgacgcgcaggacctgccgccgctgcac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31826830 ggcgtcattcccaacacacccgacccggccagcgacgcgcaggacctgccgccgctgcac 31826771
Query: 361 agg 363
|||
Sbjct: 31826770 agg 31826768
Score = 642 bits (324), Expect = 0.0
Identities = 339/343 (98%), Gaps = 2/343 (0%)
Strand = Plus / Minus
Query: 2467 gtgggtggaattaaagacaaagtgctggcagcacacagagcaggactgaagcatgtcatc 2526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31861141 gtgggtggaattaaagacaaagtgctggcagcacacagagcaggactgaagcatgtcatc 31861082
Query: 2527 attcctcagaggaatgaaaaagaccttgaagaaatcccaggcaatgtccggcaggactta 2586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31861081 attcctcagaggaatgaaaaagaccttgaagaaatcccaggcaatgtccggcaggactta 31861022
Query: 2587 agttttgtca--gcgagctgcctggatgaagttcttaacgcagcttttgatggcggcttt 2644
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31861021 agttttgtcacagcgagctgcctggatgaagttcttaacgcagcttttgatggcggcttt 31860962
Query: 2645 actgtgaagaccagacctggtcttctaaacagcaaactgtaggcccaacgcgcagctttt 2704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31860961 actgtgaagaccagacctggtcttctaaacagcaaactgtaggcccaacgcgcagctttt 31860902
Query: 2705 cagaattttaaatgaaaagtgccaaaaggtactgacaagatgattttattcacaccagta 2764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31860901 cagaattttaaatgaaaagtgccaaaaggtactgacaagatgattttattcacaccagta 31860842
Query: 2765 ggggttagcaaaatgcccctaatttgtgaacgtaatcacagta 2807
||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 31860841 gggttaagcaaaatgcccctaatttgtgaacgtaatcacagta 31860799
Score = 517 bits (261), Expect = e-143
Identities = 261/261 (100%)
Strand = Plus / Minus
Query: 1111 gaccgtctggacattcgagctgccaggattcttctggataatgaccattatgccatggaa 1170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31801054 gaccgtctggacattcgagctgccaggattcttctggataatgaccattatgccatggaa 31800995
Query: 1171 aaattgaagaaaagagtgctggagtacttggctgtcagacagctgaaaaacaacctgaag 1230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31800994 aaattgaagaaaagagtgctggagtacttggctgtcagacagctgaaaaacaacctgaag 31800935
Query: 1231 ggccccattctgtgctttgttggccctcctggtgttggtaaaacaagtgtgggaagatca 1290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31800934 ggccccattctgtgctttgttggccctcctggtgttggtaaaacaagtgtgggaagatca 31800875
Query: 1291 gtggccaagactctgggtcgagagttccacaggatagcccttggaggcgtgtgtgatcag 1350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31800874 gtggccaagactctgggtcgagagttccacaggatagcccttggaggcgtgtgtgatcag 31800815
Query: 1351 tctgacattcgcggacacagg 1371
|||||||||||||||||||||
Sbjct: 31800814 tctgacattcgcggacacagg 31800794
Score = 472 bits (238), Expect = e-130
Identities = 238/238 (100%)
Strand = Plus / Minus
Query: 360 caggattgggacggctgcgctggcggtccaggttgtgggcagtaactggcccaagcccca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31818390 caggattgggacggctgcgctggcggtccaggttgtgggcagtaactggcccaagcccca 31818331
Query: 420 ctatactttgctgattacgggcctgtgccgtttccagatcgtacaggtggtcaaagagaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31818330 ctatactttgctgattacgggcctgtgccgtttccagatcgtacaggtggtcaaagagaa 31818271
Query: 480 gccatatcccgttgctgaagtggagcagttggatcggctcgaggagttccccaacacctg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31818270 gccatatcccgttgctgaagtggagcagttggatcggctcgaggagttccccaacacctg 31818211
Query: 540 caaaactagggaggagctaggagaactgtcggagcagttttacaagtatgcagtgcaa 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31818210 caaaactagggaggagctaggagaactgtcggagcagttttacaagtatgcagtgcaa 31818153
Score = 416 bits (210), Expect = e-113
Identities = 210/210 (100%)
Strand = Plus / Minus
Query: 2066 aggtgtctgagcgcttgagtcaaccaggagtggcgattggcttggcctggacccccctgg 2125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31866266 aggtgtctgagcgcttgagtcaaccaggagtggcgattggcttggcctggacccccctgg 31866207
Query: 2126 gtggggaaattatgttcgtggaggcgagtcgcatggacggcgagggccagttaactctga 2185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31866206 gtggggaaattatgttcgtggaggcgagtcgcatggacggcgagggccagttaactctga 31866147
Query: 2186 ctggccagctcggggacgtcatgaaggagtcggcccatctcgccatcagctggctccgca 2245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31866146 ctggccagctcggggacgtcatgaaggagtcggcccatctcgccatcagctggctccgca 31866087
Query: 2246 gcaatgccaagaaataccatctgaccaacg 2275
||||||||||||||||||||||||||||||
Sbjct: 31866086 gcaatgccaagaaataccatctgaccaacg 31866057
Score = 385 bits (194), Expect = e-104
Identities = 194/194 (100%)
Strand = Plus / Minus
Query: 2275 gcttctggaagttttgatcttcttgagaacacagacatccatctgcacttcccagctgga 2334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31865671 gcttctggaagttttgatcttcttgagaacacagacatccatctgcacttcccagctgga 31865612
Query: 2335 gctgtcacaaaagatggaccatctgctggcgttaccatagcaacctgtctcgcctcactt 2394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31865611 gctgtcacaaaagatggaccatctgctggcgttaccatagcaacctgtctcgcctcactt 31865552
Query: 2395 tttagtgggcggctggtgcgttcagatgtagccatgactggtgaaatcacactgcgaggt 2454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31865551 tttagtgggcggctggtgcgttcagatgtagccatgactggtgaaatcacactgcgaggt 31865492
Query: 2455 ctcgttctcccagt 2468
||||||||||||||
Sbjct: 31865491 ctcgttctcccagt 31865478
Score = 329 bits (166), Expect = 5e-87
Identities = 166/166 (100%)
Strand = Plus / Minus
Query: 852 ggttatagcaatacgccctattcggaggattacacacatcccaggagctttagaagatga 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31809837 ggttatagcaatacgccctattcggaggattacacacatcccaggagctttagaagatga 31809778
Query: 912 ggatgaggatgaagataatgatgatattgtcatgctagagaagaaaatacgcacatccaa 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31809777 ggatgaggatgaagataatgatgatattgtcatgctagagaagaaaatacgcacatccaa 31809718
Query: 972 tatgccagagcaggcccacaaagtctgtgtcaaagagataaaaagg 1017
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31809717 tatgccagagcaggcccacaaagtctgtgtcaaagagataaaaagg 31809672
Score = 305 bits (154), Expect = 7e-80
Identities = 154/154 (100%)
Strand = Plus / Plus
Query: 1511 aggtgttggatcccgaacaaaaccataacttcacagatcattatctaaatgtggcctttg 1570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31896542 aggtgttggatcccgaacaaaaccataacttcacagatcattatctaaatgtggcctttg 31896601
Query: 1571 acctttcccaagttctttttatagcgactgccaacaccactgctactattccacctgctt 1630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31896602 acctttcccaagttctttttatagcgactgccaacaccactgctactattccacctgctt 31896661
Query: 1631 tgttggacagaatggagatcattcaggtgccagg 1664
||||||||||||||||||||||||||||||||||
Sbjct: 31896662 tgttggacagaatggagatcattcaggtgccagg 31896695
Score = 293 bits (148), Expect = 3e-76
Identities = 148/148 (100%)
Strand = Plus / Minus
Query: 1923 aggtggcaaagaacacatcctagaagatgcaaaaccggactccatcgatgacactactga 1982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31875391 aggtggcaaagaacacatcctagaagatgcaaaaccggactccatcgatgacactactga 31875332
Query: 1983 cttgggcctaccacctgaaatgccaattttgattgacttccatgctctgaaagacatcct 2042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31875331 cttgggcctaccacctgaaatgccaattttgattgacttccatgctctgaaagacatcct 31875272
Query: 2043 cgggcccccaatgtatgaaatggaggtg 2070
||||||||||||||||||||||||||||
Sbjct: 31875271 cgggcccccaatgtatgaaatggaggtg 31875244
Score = 281 bits (142), Expect = 1e-72
Identities = 145/146 (99%)
Strand = Plus / Plus
Query: 1369 aggcgcacctatgtgggcagcatgcctggccggataatcaatggcttgaagactgtcggg 1428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31883750 aggcgcacctatgtgggcagcatgcctggccggataatcaatggcttgaagactgtcggg 31883809
Query: 1429 gtgaacaatccagtgttcctgttggatgaggtggacaaactaggaaaaagtctacagggt 1488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31883810 gtgaacaatccagtgttcctgttggatgaggtggacaaactaggaaaaagtctacagggt 31883869
Query: 1489 gatcctgcagcagctctacttgaggt 1514
||||||||||||||||| ||||||||
Sbjct: 31883870 gatcctgcagcagctctgcttgaggt 31883895
Score = 276 bits (139), Expect = 6e-71
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 1788 caggtacaccagagaggcaggggtccgctctctggacaggaagctgggggccatttgccg 1847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31903096 caggtacaccagagaggcaggggtccgctctctggacaggaagctgggggccatttgccg 31903155
Query: 1848 agctgttgccgtgaaggtggcagagggacagcaccgagaagccaagttggaccgtcctgg 1907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31903156 agctgttgccgtgaaggtggcagagggacagcaccgagaagccaagttggaccgtcctgg 31903215
Query: 1908 cgtggctgagggagaaggt 1926
|||||||||||||||||||
Sbjct: 31903216 cgtggctgagggagaaggt 31903234
Score = 264 bits (133), Expect = 2e-67
Identities = 136/137 (99%)
Strand = Plus / Minus
Query: 593 tgcaattggtcgaaatgttggatatgtctgtccctgcggttgctaaattgaggcggcttt 652
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31815867 tgcagttggtcgaaatgttggatatgtctgtccctgcggttgctaaattgaggcggcttt 31815808
Query: 653 tagatagtctgccaagggaggctttaccagatatcctgacatcaattatccgaacaagca 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31815807 tagatagtctgccaagggaggctttaccagatatcctgacatcaattatccgaacaagca 31815748
Query: 713 acaaagagaagctccag 729
|||||||||||||||||
Sbjct: 31815747 acaaagagaagctccag 31815731
Score = 264 bits (133), Expect = 2e-67
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 1660 ccagggtatacacaagaggagaagatcgagatcgcccacaggcacttgatcccaaagcaa 1719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31898731 ccagggtatacacaagaggagaagatcgagatcgcccacaggcacttgatcccaaagcaa 31898790
Query: 1720 ctggagcagcatgggctgactcctcagcagattcagatccctcaggtgactactctggac 1779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31898791 ctggagcagcatgggctgactcctcagcagattcagatccctcaggtgactactctggac 31898850
Query: 1780 gtcatcaccaggt 1792
|||||||||||||
Sbjct: 31898851 gtcatcaccaggt 31898863
Score = 254 bits (128), Expect = 2e-64
Identities = 128/128 (100%)
Strand = Plus / Minus
Query: 727 cagattttagatgctgtgagtctggaggagcggttcaagatgaccataccactgcttgtc 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31813736 cagattttagatgctgtgagtctggaggagcggttcaagatgaccataccactgcttgtc 31813677
Query: 787 agacaaattgaaggcctgaaattgcttcagaaaaccaggaaacacaagcaggatgatgag 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31813676 agacaaattgaaggcctgaaattgcttcagaaaaccaggaaacacaagcaggatgatgag 31813617
Query: 847 aagcgggt 854
||||||||
Sbjct: 31813616 aagcgggt 31813609
Score = 192 bits (97), Expect = 7e-46
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 1015 aggctcaagaaaatgcctcagtcaatgccagaatatgctctgactagaaattatctagaa 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31808327 aggctcaagaaaatgcctcagtcaatgccagaatatgctctgactagaaattatctagaa 31808268
Query: 1075 cttatggtggaacttccctggaacaaaagtacaactg 1111
|||||||||||||||||||||||||||||||||||||
Sbjct: 31808267 cttatggtggaacttccctggaacaaaagtacaactg 31808231
>Sscrofa_Chr02
|| Length = 162569375
Score = 83.8 bits (42), Expect = 5e-13
Identities = 211/264 (79%), Gaps = 5/264 (1%)
Strand = Plus / Minus
Query: 1548 tcattatctaaatgtggcctttgacctttcccaagttctttttatagcgactgccaacac 1607
|||||||| |||||||| ||||||| || ||||| ||||||| ||||| |||| ||| ||
Sbjct: 57276936 tcattatcaaaatgtggactttgactttacccaaattcttttaatagctactgtcaatac 57276877
Query: 1608 cactgctactattccacctgctttgttggacagaatggagatcattcaggtgccagggta 1667
|| || |||||| ||||| ||| ||||||| || ||||| ||| || |||| ||||
Sbjct: 57276876 cattgtgactatttcacctattttattggacataa--gagataatttagatgcccaggta 57276819
Query: 1668 tacacaagaggagaagatcgagatcgcccacaggcacttgatcccaaagcaactggagca 1727
|||||||| || |||||| | || || |||| |||||||| |||| ||||| || |
Sbjct: 57276818 tacacaagggg-gaagat--aaattaccaacagacacttgataccaaggcaaccagaata 57276762
Query: 1728 gcatgggctgactcctcagcagattcagatccctcaggtgactactctggacgtcatcac 1787
| || |||||||||||||||||||||||||| |||||| | |||||| ||| | | |||
Sbjct: 57276761 gtatttgctgactcctcagcagattcagatccttcaggttattactcttgacataaccac 57276702
Query: 1788 caggtacaccagagaggcaggggt 1811
| ||| |||||||| ||||||||
Sbjct: 57276701 cttgtaaaccagagatgcaggggt 57276678
Score = 81.8 bits (41), Expect = 2e-12
Identities = 89/105 (84%)
Strand = Plus / Minus
Query: 1069 ctagaacttatggtggaacttccctggaacaaaagtacaactgaccgtctggacattcga 1128
||||||||||| |||||| | || |||||| ||||||| ||| || ||| |||||| |
Sbjct: 57277406 ctagaacttattgtggaaatcccttggaactgaagtacagctggccatctcaacattcaa 57277347
Query: 1129 gctgccaggattcttctggataatgaccattatgccatggaaaaa 1173
|||||| | |||||||||||||||| |||||||||||||| ||||
Sbjct: 57277346 gctgcctgaattcttctggataatggccattatgccatggcaaaa 57277302
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 78,918,798
Number of extensions: 474
Number of successful extensions: 474
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 473
Number of HSP's successfully gapped: 17
Length of query: 2807
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2785
Effective length of database: 2,808,408,574
Effective search space: 7821417878590
Effective search space used: 7821417878590
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)