Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013506
(1603 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854063.1| PREDICTED: similar to T-cell death associated g... 115 1e-25
>ref|XP_854063.1| PREDICTED: similar to T-cell death associated gene [Canis
familiaris].
Length = 224
Score = 115 bits (288), Expect = 1e-25
Identities = 65/139 (46%), Positives = 84/139 (60%), Gaps = 32/139 (23%)
Frame = +1
Query: 208 LREGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAK--------------GAG-------- 321
L+EGVLEKRS GLLQLWK+K C+LTE GL L K G G
Sbjct: 10 LKEGVLEKRSDGLLQLWKKKCCILTEEGLLLIPPKQLQQPPPPPPPQQPGPGPAEPSQPG 69
Query: 322 ----------GRPKELSFARIKAVECVESTGRHIYFTLVTEGGGEIDFRCPLEDPGWNAQ 471
G+ KEL F+ +K V+CVE G+++YFT+V G EIDFRCP +D GWNA+
Sbjct: 70 APAAASLEPPGKLKELHFSNMKTVDCVERKGKYMYFTVVMAEGKEIDFRCP-QDQGWNAE 128
Query: 472 ITLGLVKFKNQQAIQTVRA 528
ITL +V++KN+QAI V++
Sbjct: 129 ITLQMVQYKNRQAILAVKS 147
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 63,289,100
Number of extensions: 2161161
Number of successful extensions: 13092
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 12926
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 426
Effective length of database: 15,274,216
Effective search space: 6506816016
Effective search space used: 6506816016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-013506
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013506
(1603 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069989.1| pleckstrin homology-like domain family A mem... 119 8e-27
Alignment gi|NP_001099101.1| pleckstrin homology-like domain family A mem... 112 9e-25
>ref|NP_001069989.1| pleckstrin homology-like domain family A member 2 [Bos taurus].
Length = 142
Score = 119 bits (298), Expect = 8e-27
Identities = 66/122 (54%), Positives = 82/122 (67%)
Frame = +1
Query: 205 VLREGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAKGAGGRPKELSFARIKAVECVESTG 384
VLREG LEKRS LLQ+WK+KR VLT L+LF G G RPKEL F I V+CVE TG
Sbjct: 7 VLREGELEKRSDSLLQVWKKKRGVLTTDRLRLFPT-GPGARPKELRFHSILKVDCVERTG 65
Query: 385 RHIYFTLVTEGGGEIDFRCPLEDPGWNAQITLGLVKFKNQQAIQTVRARQSLGAGTLVS* 564
+++YFT+VT EIDFRC E WNA ITL L+ F+N++A+Q R+R+ A +
Sbjct: 66 KYVYFTIVTTDRKEIDFRCAGES-YWNASITLALIDFQNRRAMQDFRSRRERAAAAAAAA 124
Query: 565 AA 570
AA
Sbjct: 125 AA 126
>ref|NP_001099101.1| pleckstrin homology-like domain family A member 1 [Bos taurus].
Length = 251
Score = 112 bits (280), Expect = 9e-25
Identities = 66/142 (46%), Positives = 84/142 (59%), Gaps = 35/142 (24%)
Frame = +1
Query: 208 LREGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAK-----------------GAG----- 321
L+EGVLEKRS GLLQLWK+K C+LTE GL L K G G
Sbjct: 10 LKEGVLEKRSDGLLQLWKKKCCILTEEGLLLIPPKQLQHHHQQQQQQQQQQPGQGSVEPS 69
Query: 322 --GRP-----------KELSFARIKAVECVESTGRHIYFTLVTEGGGEIDFRCPLEDPGW 462
G P KEL F+ +K V+CVE G+++YFT+V G EIDFRCP +D GW
Sbjct: 70 QPGGPAVASLEPPVKLKELHFSNMKTVDCVERKGKYMYFTVVMAEGKEIDFRCP-QDQGW 128
Query: 463 NAQITLGLVKFKNQQAIQTVRA 528
NA+ITL +V++KN+QAI V++
Sbjct: 129 NAEITLQMVQYKNRQAILAVKS 150
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 61,090,764
Number of extensions: 2196639
Number of successful extensions: 12811
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 12683
Number of HSP's successfully gapped: 3
Length of query: 534
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 427
Effective length of database: 14,140,958
Effective search space: 6038189066
Effective search space used: 6038189066
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013506
(1603 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003357723.1| PREDICTED: pleckstrin homology-like domain f... 247 2e-65
Alignment gi|XP_003357730.1| PREDICTED: pleckstrin homology-like domain f... 182 4e-46
Alignment gi|NP_001167528.1| pleckstrin homology-like domain family A mem... 121 1e-27
Alignment gi|XP_003126437.1| PREDICTED: pleckstrin homology-like domain f... 113 3e-25
>ref|XP_003357723.1| PREDICTED: pleckstrin homology-like domain family A member 3-like
[Sus scrofa].
Length = 123
Score = 247 bits (630), Expect = 2e-65
Identities = 123/123 (100%), Positives = 123/123 (100%)
Frame = +1
Query: 193 MTAAVLREGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAKGAGGRPKELSFARIKAVECV 372
MTAAVLREGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAKGAGGRPKELSFARIKAVECV
Sbjct: 1 MTAAVLREGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAKGAGGRPKELSFARIKAVECV 60
Query: 373 ESTGRHIYFTLVTEGGGEIDFRCPLEDPGWNAQITLGLVKFKNQQAIQTVRARQSLGAGT 552
ESTGRHIYFTLVTEGGGEIDFRCPLEDPGWNAQITLGLVKFKNQQAIQTVRARQSLGAGT
Sbjct: 61 ESTGRHIYFTLVTEGGGEIDFRCPLEDPGWNAQITLGLVKFKNQQAIQTVRARQSLGAGT 120
Query: 553 LVS 561
LVS
Sbjct: 121 LVS 123
>ref|XP_003357730.1| PREDICTED: pleckstrin homology-like domain family A member 3-like
[Sus scrofa].
Length = 105
Score = 182 bits (463), Expect = 4e-46
Identities = 89/89 (100%), Positives = 89/89 (100%)
Frame = +1
Query: 193 MTAAVLREGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAKGAGGRPKELSFARIKAVECV 372
MTAAVLREGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAKGAGGRPKELSFARIKAVECV
Sbjct: 1 MTAAVLREGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAKGAGGRPKELSFARIKAVECV 60
Query: 373 ESTGRHIYFTLVTEGGGEIDFRCPLEDPG 459
ESTGRHIYFTLVTEGGGEIDFRCPLEDPG
Sbjct: 61 ESTGRHIYFTLVTEGGGEIDFRCPLEDPG 89
>ref|NP_001167528.1| pleckstrin homology-like domain family A member 2 [Sus scrofa].
Length = 131
Score = 121 bits (303), Expect = 1e-27
Identities = 69/125 (55%), Positives = 81/125 (64%)
Frame = +1
Query: 205 VLREGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAKGAGGRPKELSFARIKAVECVESTG 384
VLREG LEKRS L QLWK+KR VLT L LF GAG RPKEL F I V+CVE TG
Sbjct: 7 VLREGELEKRSDSLFQLWKKKRGVLTPDRLSLFPT-GAGARPKELRFHSILKVDCVERTG 65
Query: 385 RHIYFTLVTEGGGEIDFRCPLEDPGWNAQITLGLVKFKNQQAIQTVRARQSLGAGTLVS* 564
+++YFT+VT EIDFRC E WNA ITL L+ F+N++A+Q R+RQ A
Sbjct: 66 KYVYFTIVTTDRKEIDFRCAGES-CWNAAITLALIDFQNRRALQDFRSRQERAAPAAQPE 124
Query: 565 AADGR 579
AA R
Sbjct: 125 AATAR 129
>ref|XP_003126437.1| PREDICTED: pleckstrin homology-like domain family A member 1-like
[Sus scrofa].
Length = 388
Score = 113 bits (283), Expect = 3e-25
Identities = 66/139 (47%), Positives = 84/139 (60%), Gaps = 32/139 (23%)
Frame = +1
Query: 208 LREGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAK--------------GAG-------G 324
L+EGVLEKRS GLLQLWK+K C+LTE GL L K G G G
Sbjct: 153 LKEGVLEKRSDGLLQLWKKKCCILTEEGLLLIPPKQLQHQQQQQQQQQPGQGSVEPSQSG 212
Query: 325 RP-----------KELSFARIKAVECVESTGRHIYFTLVTEGGGEIDFRCPLEDPGWNAQ 471
P KEL F+ +K V+CVE G+++YFT+V G EIDFRCP +D GWNA+
Sbjct: 213 GPAVASLEPPVKLKELHFSNMKTVDCVERKGKYMYFTVVMAEGKEIDFRCP-QDQGWNAE 271
Query: 472 ITLGLVKFKNQQAIQTVRA 528
ITL +V++KN+QAI V++
Sbjct: 272 ITLQMVQYKNRQAILAVKS 290
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 40,739,493
Number of extensions: 1603995
Number of successful extensions: 8512
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 8384
Number of HSP's successfully gapped: 5
Length of query: 534
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 430
Effective length of database: 8,754,644
Effective search space: 3764496920
Effective search space used: 3764496920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013506
(1603 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038778.1| pleckstrin homology-like domain family A member... 238 1e-62
Alignment gi|NP_033370.2| pleckstrin homology-like domain family A member... 113 4e-25
Alignment gi|NP_033460.1| pleckstrin homology-like domain family A member... 102 9e-22
>ref|NP_038778.1| pleckstrin homology-like domain family A member 3 [Mus musculus].
Length = 125
Score = 238 bits (606), Expect = 1e-62
Identities = 120/125 (96%), Positives = 121/125 (96%), Gaps = 2/125 (1%)
Frame = +1
Query: 193 MTAA--VLREGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAKGAGGRPKELSFARIKAVE 366
MTAA VL+EGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAKG GGRPKELSFARIKAVE
Sbjct: 1 MTAAATVLKEGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAKGTGGRPKELSFARIKAVE 60
Query: 367 CVESTGRHIYFTLVTEGGGEIDFRCPLEDPGWNAQITLGLVKFKNQQAIQTVRARQSLGA 546
CVESTGRHIYFTLVTEGGGEIDFRCPLEDPGWNAQITLGLVKFKNQQAIQTVRARQSLG
Sbjct: 61 CVESTGRHIYFTLVTEGGGEIDFRCPLEDPGWNAQITLGLVKFKNQQAIQTVRARQSLGT 120
Query: 547 GTLVS 561
GTLVS
Sbjct: 121 GTLVS 125
>ref|NP_033370.2| pleckstrin homology-like domain family A member 1 [Mus musculus].
Length = 405
Score = 113 bits (283), Expect = 4e-25
Identities = 64/136 (47%), Positives = 83/136 (61%), Gaps = 29/136 (21%)
Frame = +1
Query: 208 LREGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAK-----------GAGG---------- 324
L+EGVLEKRS GLLQLWK+K C+LTE GL L K G G
Sbjct: 154 LKEGVLEKRSDGLLQLWKKKCCILTEEGLLLIPPKQLQQQQQQQQPGQGTAEPSQPSGPT 213
Query: 325 --------RPKELSFARIKAVECVESTGRHIYFTLVTEGGGEIDFRCPLEDPGWNAQITL 480
+ KEL F+ +K V+CVE G+++YFT+V G EIDFRCP +D GWNA+ITL
Sbjct: 214 VASLEPPVKLKELHFSNMKTVDCVERKGKYMYFTVVMTEGKEIDFRCP-QDQGWNAEITL 272
Query: 481 GLVKFKNQQAIQTVRA 528
+V++KN+QAI V++
Sbjct: 273 QMVQYKNRQAILAVKS 288
>ref|NP_033460.1| pleckstrin homology-like domain family A member 2 [Mus musculus].
Length = 144
Score = 102 bits (254), Expect = 9e-22
Identities = 54/104 (51%), Positives = 71/104 (68%)
Frame = +1
Query: 205 VLREGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAKGAGGRPKELSFARIKAVECVESTG 384
+L EG LEKRS L Q+WK+KRCVLT L+LF K + KEL F I V+CVE T
Sbjct: 18 ILCEGELEKRSDSLFQVWKKKRCVLTADRLRLFSGKTSPA--KELFFHSILKVDCVEHTS 75
Query: 385 RHIYFTLVTEGGGEIDFRCPLEDPGWNAQITLGLVKFKNQQAIQ 516
+++YFT+VT EIDFRC +E WNA IT+ L+ F+N++A+Q
Sbjct: 76 KYVYFTIVTNYYKEIDFRCTVES-CWNAAITMALIDFQNRRALQ 118
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 51,214,785
Number of extensions: 1671425
Number of successful extensions: 9364
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9250
Number of HSP's successfully gapped: 3
Length of query: 534
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 428
Effective length of database: 12,433,743
Effective search space: 5321642004
Effective search space used: 5321642004
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013506
(1603 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036528.1| pleckstrin homology-like domain family A member... 239 5e-63
Alignment gi|NP_003302.1| pleckstrin homology-like domain family A member... 112 1e-24
Alignment gi|NP_031376.3| pleckstrin homology-like domain family A member... 110 5e-24
>ref|NP_036528.1| pleckstrin homology-like domain family A member 3 [Homo sapiens].
Length = 127
Score = 239 bits (610), Expect = 5e-63
Identities = 118/122 (96%), Positives = 119/122 (97%)
Frame = +1
Query: 196 TAAVLREGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAKGAGGRPKELSFARIKAVECVE 375
TA VL+EGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAKG GGRPKELSFARIKAVECVE
Sbjct: 6 TATVLKEGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAKGTGGRPKELSFARIKAVECVE 65
Query: 376 STGRHIYFTLVTEGGGEIDFRCPLEDPGWNAQITLGLVKFKNQQAIQTVRARQSLGAGTL 555
STGRHIYFTLVTEGGGEIDFRCPLEDPGWNAQITLGLVKFKNQQAIQTVRARQSLG GTL
Sbjct: 66 STGRHIYFTLVTEGGGEIDFRCPLEDPGWNAQITLGLVKFKNQQAIQTVRARQSLGTGTL 125
Query: 556 VS 561
VS
Sbjct: 126 VS 127
>ref|NP_003302.1| pleckstrin homology-like domain family A member 2 [Homo sapiens].
Length = 152
Score = 112 bits (280), Expect = 1e-24
Identities = 62/110 (56%), Positives = 74/110 (67%)
Frame = +1
Query: 205 VLREGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAKGAGGRPKELSFARIKAVECVESTG 384
VLREG LEKRS L QLWK+KR VLT L LF A RPKEL F I V+CVE TG
Sbjct: 7 VLREGELEKRSDSLFQLWKKKRGVLTSDRLSLFPASPRA-RPKELRFHSILKVDCVERTG 65
Query: 385 RHIYFTLVTEGGGEIDFRCPLEDPGWNAQITLGLVKFKNQQAIQTVRARQ 534
+++YFT+VT EIDFRC E WNA I L L+ F+N++A+Q R+RQ
Sbjct: 66 KYVYFTIVTTDHKEIDFRCAGES-CWNAAIALALIDFQNRRALQDFRSRQ 114
>ref|NP_031376.3| pleckstrin homology-like domain family A member 1 [Homo sapiens].
Length = 401
Score = 110 bits (274), Expect = 5e-24
Identities = 64/145 (44%), Positives = 83/145 (57%), Gaps = 38/145 (26%)
Frame = +1
Query: 208 LREGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAK--------------------GAGG- 324
L+EGVLEKRS GLLQLWK+K C+LTE GL L K G G
Sbjct: 151 LKEGVLEKRSDGLLQLWKKKCCILTEEGLLLIPPKQLQHQQQQQQQQQQQQQQQPGQGPA 210
Query: 325 -----------------RPKELSFARIKAVECVESTGRHIYFTLVTEGGGEIDFRCPLED 453
+ KEL F+ +K V+CVE G+++YFT+V G EIDFRCP +D
Sbjct: 211 EPSQPSGPAVASLEPPVKLKELHFSNMKTVDCVERKGKYMYFTVVMAEGKEIDFRCP-QD 269
Query: 454 PGWNAQITLGLVKFKNQQAIQTVRA 528
GWNA+ITL +V++KN+QAI V++
Sbjct: 270 QGWNAEITLQMVQYKNRQAILAVKS 294
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 61,477,546
Number of extensions: 2058112
Number of successful extensions: 12200
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 12017
Number of HSP's successfully gapped: 4
Length of query: 534
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 427
Effective length of database: 14,770,016
Effective search space: 6306796832
Effective search space used: 6306796832
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013506
(1603 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 1746 0.0
>Sscrofa_Chr10
|| Length = 79102373
Score = 1746 bits (881), Expect = 0.0
Identities = 887/889 (99%)
Strand = Plus / Minus
Query: 622 cagccccctgcctctccagcttttgcgggccgactgccccatcgggcagggtggaagcca 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28234087 cagccccctgcctctccagcttttgcgggccgactgccccatcgggcagggtggaagcca 28234028
Query: 682 tggacgcgtggaagaggcgtgggaacctaagccttgccgggcctgggaggagggcagatg 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28234027 tggacgcgtggaagaggcgtgggaacctaagccttgccgggcctgggaggagggcagatg 28233968
Query: 742 gccacgtggggctgaggatgaagattcagcccttgtagatgcagactctcgggatggacc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28233967 gccacgtggggctgaggatgaagattcagcccttgtagatgcagactctcgggatggacc 28233908
Query: 802 agctcagaccttgcagccacctgcctggcctccgagatggtgacgggagctggcatcaca 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28233907 agctcagaccttgcagccacctgcctggcctccgagatggtgacgggagctggcatcaca 28233848
Query: 862 gacccctcccgccatgccctgccatctgtcctgcagactactcttggtccccgggcttgg 921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28233847 gacccctcccgccatgccctgccatctgtcctgcagactactcttggtccccgggcttgg 28233788
Query: 922 gccatgcctggaggaaggcagacccccgggggcgctcagccagcgcctcaggactcagga 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28233787 gccatgcctggaggaaggcagacccccgggggcgctcagccagcgcctcaggactcagga 28233728
Query: 982 ggccagcctgacgctcagaagaggaaactccccaccccaactcccctctggattcacttt 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28233727 ggccagcctgacgctcagaagaggaaactccccaccccaactcccctctggattcacttt 28233668
Query: 1042 ggcgggggtcactgatgggcctgcggcccacgctttggggtcgtctgctgcttgggtcct 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28233667 ggcgggggtcactgatgggcctgcggcccacgctttggggtcgtctgctgcttgggtcct 28233608
Query: 1102 tctgggacccccacccattcaggcctctctttgcacagttcttccccctcctgcccatct 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28233607 tctgggacccccacccattcaggcctctctttgcacagttcttccccctcctgcccatct 28233548
Query: 1162 tctccccactgcagtgctaggcctggaggtggtgggggtggtcgggggttcagccattac 1221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28233547 tctccccactgcagtgctaggcctggaggtggtgggggtggtcgggggttcagccattac 28233488
Query: 1222 catttcattaccatttcatgcctatcccaacccgcagccgctctgcctgcaaaggcagcg 1281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28233487 catttcattaccatttcatgcctatcccaacccgcagccgctctgcctgcaaaggcagcg 28233428
Query: 1282 ctcacactgttcactgaatgaaattctttgcccacaaagacctggtgtttggaacatctg 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28233427 ctcacactgttcactgaatgaaattctttgcccacaaagacctggtgtttggaacatctg 28233368
Query: 1342 tttcctcacccccactttcccagtctgcatcccacccctaaacttccaggctggggaggg 1401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28233367 tttcctcacccccactttcccagtctgcatcccacccctaaacttccaggctggggaggg 28233308
Query: 1402 agagaccctggagcccaggggacaggaccccagaggtcctaggagggagagactatgaga 1461
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 28233307 agagaccctggagcccaggggacaggacctcagaggtcctaggagggagagactatgaga 28233248
Query: 1462 ccgggacgggaggtgttgctctggccagctcagtctccagagatgcccc 1510
||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 28233247 ccgggacgggaggtgttgccctggccagctcagtctccagagatgcccc 28233199
Score = 856 bits (432), Expect = 0.0
Identities = 432/432 (100%)
Strand = Plus / Minus
Query: 193 atgacggcggccgtgctccgggagggcgtgctggagaagcgcagtggcgggctgctgcag 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28235786 atgacggcggccgtgctccgggagggcgtgctggagaagcgcagtggcgggctgctgcag 28235727
Query: 253 ttgtggaagcgcaagcgttgcgtgctcaccgagcgcgggctgcagctcttcgaggccaag 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28235726 ttgtggaagcgcaagcgttgcgtgctcaccgagcgcgggctgcagctcttcgaggccaag 28235667
Query: 313 ggcgcgggcggccgtcccaaggagctgagtttcgcccgcatcaaggcggtggagtgcgtg 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28235666 ggcgcgggcggccgtcccaaggagctgagtttcgcccgcatcaaggcggtggagtgcgtg 28235607
Query: 373 gagagcacggggcgccacatctacttcacgctggtgaccgagggcggcggcgagatcgac 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28235606 gagagcacggggcgccacatctacttcacgctggtgaccgagggcggcggcgagatcgac 28235547
Query: 433 ttccgctgcccgctcgaggaccccggctggaacgcgcagatcaccctgggcctggtcaag 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28235546 ttccgctgcccgctcgaggaccccggctggaacgcgcagatcaccctgggcctggtcaag 28235487
Query: 493 ttcaagaaccagcaggctatccagacggtgcgcgcgcggcagagcctgggggccgggacc 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28235486 ttcaagaaccagcaggctatccagacggtgcgcgcgcggcagagcctgggggccgggacc 28235427
Query: 553 ctggtgtcttaagccgcggacggacgtctccgctccacgcggcccattgacgcagcgcgg 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28235426 ctggtgtcttaagccgcggacggacgtctccgctccacgcggcccattgacgcagcgcgg 28235367
Query: 613 aggtggtgtcag 624
||||||||||||
Sbjct: 28235366 aggtggtgtcag 28235355
Score = 143 bits (72), Expect = 3e-31
Identities = 72/72 (100%)
Strand = Plus / Minus
Query: 1 gacatgtgagggcacatccccggagcggccgcccagcgcgcagacggccggcggagcgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28235980 gacatgtgagggcacatccccggagcggccgcccagcgcgcagacggccggcggagcgag 28235921
Query: 61 cgggccagcgat 72
||||||||||||
Sbjct: 28235920 cgggccagcgat 28235909
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,372,132
Number of extensions: 338
Number of successful extensions: 338
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 338
Number of HSP's successfully gapped: 3
Length of query: 1603
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1581
Effective length of database: 2,808,408,574
Effective search space: 4440093955494
Effective search space used: 4440093955494
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)