Animal-Genome cDNA 20110601C-013684


Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013684
         (997 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_546051.2| PREDICTED: similar to betaine-homocysteine meth...   550   e-157
Alignment   gi|XP_536313.2| PREDICTED: similar to Betaine--homocysteine S-m...   472   e-133

>ref|XP_546051.2| PREDICTED: similar to betaine-homocysteine methyltransferase 2
           [Canis familiaris].
          Length = 363

 Score =  550 bits (1418), Expect = e-157
 Identities = 268/328 (81%), Positives = 292/328 (89%), Gaps = 1/328 (0%)
 Frame = +2

Query: 17  MAPAGSPRAKKGILERLDAGEVVVGDGGFLLTLEKRGYVKAGLWTPEAVVEHPNAVRQLH 196
           MAP G P AKKGILERLD+GEVVVGDG FL+TLEKRGYVKAGLWTPEA+V+HP+AVRQLH
Sbjct: 1   MAPVGGPGAKKGILERLDSGEVVVGDGSFLITLEKRGYVKAGLWTPEAIVDHPDAVRQLH 60

Query: 197 MEFLRAGSNVMQTFTFSANEDNMESQWEAVNAAACDLAQEVAGKGDALVAGGLCQTSLYK 376
           MEFLRAGSNVMQTFTFSA+EDNM S+WE VNAAACDLA+EVAGKGDALVAGG+ QTS+Y+
Sbjct: 61  MEFLRAGSNVMQTFTFSASEDNMGSKWEDVNAAACDLAREVAGKGDALVAGGISQTSVYR 120

Query: 377 HHKDEDRIKKLFRLQLEVFVRKNVDFLIXXXXXXXXXXXXXXXXLKESGKPVAATMCIGP 556
           HHKDE R+KKLF+LQLEVF+RKNVDFLI                LKESGKPVA TMCIGP
Sbjct: 121 HHKDEARVKKLFQLQLEVFIRKNVDFLIAEYFEHAEEAVWAVEVLKESGKPVAVTMCIGP 180

Query: 557 EGDMHGVTPGECAVKLVKAGASIIGVNCRFGPWTSLKTMRLMKEGLQAAGLKAHLMVQSL 736
           +GDM GV PGECAVKLVKAGA+I+GVNCRFGP TSLKTM+LMKEGLQAAGL+AHL+VQSL
Sbjct: 181 DGDMCGVKPGECAVKLVKAGAAIVGVNCRFGPSTSLKTMKLMKEGLQAAGLQAHLIVQSL 240

Query: 737 VFHMPDCGKGGFVDLPEYPFALEPRVATRWDIQKYAREAYNLGIRYIGGCCGFEPYHIRA 916
            FH PDCGKGG VDLPEYPF LEPRVATRWDIQKYAREAYNLG+RYIGGCCGFEPYHIRA
Sbjct: 241 GFHTPDCGKGGVVDLPEYPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRA 300

Query: 917 IAEELAPERGF-SSSFKEHGSWGSGLNM 997
           IAEELAPERGF   + ++HGSWGSGLNM
Sbjct: 301 IAEELAPERGFLPPASEKHGSWGSGLNM 328


>ref|XP_536313.2| PREDICTED: similar to Betaine--homocysteine S-methyltransferase
            [Canis familiaris].
          Length = 407

 Score =  472 bits (1215), Expect = e-133
 Identities = 233/337 (69%), Positives = 269/337 (79%), Gaps = 10/337 (2%)
 Frame = +2

Query: 17   MAPAGSPRAKKGILERLDAGEVVVGDGGFLLTLEKRGYVKAGLWTPEAVVEHPNAVRQLH 196
            MAP G  +A++GILERL++GEVV+GDGGF+  LEKRGYVKAG WTPEA VEHP AVRQLH
Sbjct: 1    MAPVGGRKARRGILERLNSGEVVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 60

Query: 197  MEFLRAGSNVMQTFTFSANEDNMESQW---------EAVNAAACDLAQEVAGKGDALVAG 349
             EFLRAGSNVMQTFTF A+ED +E++          + VN AACD+A++VA +GDALVAG
Sbjct: 61   REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG 120

Query: 350  GLCQTSLYKHHKDEDRIKKLFRLQLEVFVRKNVDFLIXXXXXXXXXXXXXXXXLKESGKP 529
            G+ QT  Y   K E  +KK+F+ QLEVFV+KNVDFLI                LK SGKP
Sbjct: 121  GVSQTPSYLSCKSETEVKKVFQQQLEVFVKKNVDFLIAEYFEHVEEAVWAVEALKASGKP 180

Query: 530  VAATMCIGPEGDMHGVTPGECAVKLVKAGASIIGVNCRFGPWTSLKTMRLMKEGLQAAGL 709
            VAATMCIGPEGD+HGV+PGECAV+LVKAGASI+GVNC F P  SL+T++LMKEGL AA L
Sbjct: 181  VAATMCIGPEGDLHGVSPGECAVRLVKAGASIVGVNCHFDPTISLQTVKLMKEGLDAARL 240

Query: 710  KAHLMVQSLVFHMPDCGKGGFVDLPEYPFALEPRVATRWDIQKYAREAYNLGIRYIGGCC 889
            KAHLM Q L +H PDC K GF+DLPE+PF LEPRVATRWDIQKYAREAYNLG+RYIGGCC
Sbjct: 241  KAHLMSQPLAYHTPDCNKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 300

Query: 890  GFEPYHIRAIAEELAPERGF-SSSFKEHGSWGSGLNM 997
            GFEPYHIRAIAEELAPERGF   + ++HGSWGSGL+M
Sbjct: 301  GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLDM 337


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,705,173
Number of extensions: 1293676
Number of successful extensions: 4042
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4033
Number of HSP's successfully gapped: 2
Length of query: 332
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 229
Effective length of database: 15,440,896
Effective search space: 3535965184
Effective search space used: 3535965184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013684
         (997 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001011679.1| betaine--homocysteine S-methyltransferase 1 ...   479   e-135

>ref|NP_001011679.1| betaine--homocysteine S-methyltransferase 1 [Bos taurus].
          Length = 407

 Score =  479 bits (1232), Expect = e-135
 Identities = 236/337 (70%), Positives = 270/337 (80%), Gaps = 10/337 (2%)
 Frame = +2

Query: 17   MAPAGSPRAKKGILERLDAGEVVVGDGGFLLTLEKRGYVKAGLWTPEAVVEHPNAVRQLH 196
            MAPAG    KKGILERL++GEV++GDGGF+  LEKRGYVKAG WTPEA VEHP AVRQLH
Sbjct: 1    MAPAGGKNVKKGILERLNSGEVIIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 60

Query: 197  MEFLRAGSNVMQTFTFSANEDNMESQW---------EAVNAAACDLAQEVAGKGDALVAG 349
             EFLRAGSNVMQTFTF A+ED +E++          + VN AACD+A++VA +GDALVAG
Sbjct: 61   REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG 120

Query: 350  GLCQTSLYKHHKDEDRIKKLFRLQLEVFVRKNVDFLIXXXXXXXXXXXXXXXXLKESGKP 529
            G+ QT  Y   K E  +KK+F+ QLEVFV+KNVDFLI                LK SGKP
Sbjct: 121  GVSQTPSYLSCKSETEVKKVFQQQLEVFVKKNVDFLIAEYFEHVEEAVWAVEALKASGKP 180

Query: 530  VAATMCIGPEGDMHGVTPGECAVKLVKAGASIIGVNCRFGPWTSLKTMRLMKEGLQAAGL 709
            VAATMCIGPEGD+H VTPGECAV+LVKAGASI+GVNC F P  SL+T++LMKEGL+AAGL
Sbjct: 181  VAATMCIGPEGDLHSVTPGECAVRLVKAGASIVGVNCHFDPTISLQTVKLMKEGLEAAGL 240

Query: 710  KAHLMVQSLVFHMPDCGKGGFVDLPEYPFALEPRVATRWDIQKYAREAYNLGIRYIGGCC 889
            KAHLM Q L +H PDCGK GF+DLPE+PF LEPRVATRWDIQKYAREAYNLG+RYIGGCC
Sbjct: 241  KAHLMSQPLAYHTPDCGKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 300

Query: 890  GFEPYHIRAIAEELAPERGF-SSSFKEHGSWGSGLNM 997
            GFEPYHIRAIAEELAPERGF   + ++HGSWGSGL+M
Sbjct: 301  GFEPYHIRAIAEELAPERGFLPLASEKHGSWGSGLDM 337


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,923,699
Number of extensions: 1260073
Number of successful extensions: 4058
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4051
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 229
Effective length of database: 14,273,310
Effective search space: 3268587990
Effective search space used: 3268587990
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013684
         (997 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001191700.1| betaine--homocysteine S-methyltransferase 2 ...   616   e-177
Alignment   gi|NP_001186971.1| betaine--homocysteine S-methyltransferase 1 ...   481   e-136
Alignment   gi|XP_003123783.2| PREDICTED: betaine--homocysteine S-methyltra...   223   1e-58
Alignment   gi|XP_003123788.2| PREDICTED: betaine--homocysteine S-methyltra...   221   4e-58

>ref|NP_001191700.1| betaine--homocysteine S-methyltransferase 2 [Sus scrofa].
          Length = 363

 Score =  616 bits (1589), Expect = e-177
 Identities = 305/328 (92%), Positives = 308/328 (93%), Gaps = 1/328 (0%)
 Frame = +2

Query: 17  MAPAGSPRAKKGILERLDAGEVVVGDGGFLLTLEKRGYVKAGLWTPEAVVEHPNAVRQLH 196
           MAPAGSPRAKKGILERLDAGEVVVGDGGFLLTLEKRGYVKAGLWTPEAVVEHPNAVRQLH
Sbjct: 1   MAPAGSPRAKKGILERLDAGEVVVGDGGFLLTLEKRGYVKAGLWTPEAVVEHPNAVRQLH 60

Query: 197 MEFLRAGSNVMQTFTFSANEDNMESQWEAVNAAACDLAQEVAGKGDALVAGGLCQTSLYK 376
           MEFLRAGSNVMQTFTFSANEDNMESQWEAVNAAACDLAQEVAGKGDALVAGGLCQTSLYK
Sbjct: 61  MEFLRAGSNVMQTFTFSANEDNMESQWEAVNAAACDLAQEVAGKGDALVAGGLCQTSLYK 120

Query: 377 HHKDEDRIKKLFRLQLEVFVRKNVDFLIXXXXXXXXXXXXXXXXLKESGKPVAATMCIGP 556
           HHKDEDRIKKLFRLQLEVFVRKNVDFLI                LKESGKPVAATMCIGP
Sbjct: 121 HHKDEDRIKKLFRLQLEVFVRKNVDFLIAEYFEYAEEAVWAVEVLKESGKPVAATMCIGP 180

Query: 557 EGDMHGVTPGECAVKLVKAGASIIGVNCRFGPWTSLKTMRLMKEGLQAAGLKAHLMVQSL 736
           EGDMHGVTPGECAVKLVKAGASIIGVNCRFGPWTSLKTMRLMKEGLQAAGLKAHLMVQSL
Sbjct: 181 EGDMHGVTPGECAVKLVKAGASIIGVNCRFGPWTSLKTMRLMKEGLQAAGLKAHLMVQSL 240

Query: 737 VFHMPDCGKGGFVDLPEYPFALEPRVATRWDIQKYAREAYNLGIRYIGGCCGFEPYHIRA 916
           VFHMPDCGKGGFVDLPEYPFALEPRVATRWDIQKYAREAYNLGIRYIGGCCGFEPYHIRA
Sbjct: 241 VFHMPDCGKGGFVDLPEYPFALEPRVATRWDIQKYAREAYNLGIRYIGGCCGFEPYHIRA 300

Query: 917 IAEELAPERGF-SSSFKEHGSWGSGLNM 997
           IAEELAPERGF   + ++HGSWGSGLNM
Sbjct: 301 IAEELAPERGFLPPASEKHGSWGSGLNM 328


>ref|NP_001186971.1| betaine--homocysteine S-methyltransferase 1 [Sus scrofa].
          Length = 407

 Score =  481 bits (1237), Expect = e-136
 Identities = 237/337 (70%), Positives = 271/337 (80%), Gaps = 10/337 (2%)
 Frame = +2

Query: 17   MAPAGSPRAKKGILERLDAGEVVVGDGGFLLTLEKRGYVKAGLWTPEAVVEHPNAVRQLH 196
            MAP G  +AKKGILERL++GEVV+GDGGF+  LEKRGYVKAG WTPEA VEHP AVRQLH
Sbjct: 1    MAPVGDKKAKKGILERLNSGEVVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 60

Query: 197  MEFLRAGSNVMQTFTFSANEDNMESQW---------EAVNAAACDLAQEVAGKGDALVAG 349
             EFLRAGSNVMQTFTF A+ED +E++          + VN AACD+A++VA +GDALVAG
Sbjct: 61   REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG 120

Query: 350  GLCQTSLYKHHKDEDRIKKLFRLQLEVFVRKNVDFLIXXXXXXXXXXXXXXXXLKESGKP 529
            G+ QT  Y   K E  +KK+FR QLEVF++KNVDFLI                LK SGKP
Sbjct: 121  GVSQTPSYLSCKSETEVKKVFRQQLEVFMKKNVDFLIAEYFEHVEEAVWAVEALKASGKP 180

Query: 530  VAATMCIGPEGDMHGVTPGECAVKLVKAGASIIGVNCRFGPWTSLKTMRLMKEGLQAAGL 709
            VAATMCIGPEGD+HGVTPG+CAV+LVKAGASI+GVNC F P  SL+T++LMKEGLQAAGL
Sbjct: 181  VAATMCIGPEGDLHGVTPGQCAVRLVKAGASIVGVNCHFDPTISLQTVKLMKEGLQAAGL 240

Query: 710  KAHLMVQSLVFHMPDCGKGGFVDLPEYPFALEPRVATRWDIQKYAREAYNLGIRYIGGCC 889
            KAHLM Q L +H PDCGK GF+DLPE+PF LEPRVATRWDIQKYAREAYNLG+RYIGGCC
Sbjct: 241  KAHLMSQPLAYHTPDCGKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 300

Query: 890  GFEPYHIRAIAEELAPERGF-SSSFKEHGSWGSGLNM 997
            GFEPYHIRAIAEELAPERGF   + ++HGSWGS L+M
Sbjct: 301  GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSALDM 337


>ref|XP_003123783.2| PREDICTED: betaine--homocysteine S-methyltransferase 1-like,
           partial [Sus scrofa].
          Length = 264

 Score =  223 bits (568), Expect = 1e-58
 Identities = 104/134 (77%), Positives = 117/134 (87%), Gaps = 1/134 (0%)
 Frame = +2

Query: 599 KLVKAGASIIGVNCRFGPWTSLKTMRLMKEGLQAAGLKAHLMVQSLVFHMPDCGKGGFVD 778
           +L K GASI+GVNC F P  SL+T++LMKEGLQAAGLKAHLM Q L +H PDCGK GF+D
Sbjct: 61  RLQKKGASIVGVNCHFDPTISLQTVKLMKEGLQAAGLKAHLMSQPLAYHTPDCGKQGFID 120

Query: 779 LPEYPFALEPRVATRWDIQKYAREAYNLGIRYIGGCCGFEPYHIRAIAEELAPERGF-SS 955
           LPE+PF LEPRVATRWDIQKYAREAYNLG+RYIGGCCGFEPYHIRAIAEELAPERGF   
Sbjct: 121 LPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPP 180

Query: 956 SFKEHGSWGSGLNM 997
           + ++HGSWGS L+M
Sbjct: 181 ASEKHGSWGSALDM 194


>ref|XP_003123788.2| PREDICTED: betaine--homocysteine S-methyltransferase 1-like [Sus
           scrofa].
          Length = 205

 Score =  221 bits (564), Expect = 4e-58
 Identities = 103/130 (79%), Positives = 115/130 (88%), Gaps = 1/130 (0%)
 Frame = +2

Query: 611 AGASIIGVNCRFGPWTSLKTMRLMKEGLQAAGLKAHLMVQSLVFHMPDCGKGGFVDLPEY 790
           AGASI+GVNC F P  SL+T++LMKEGLQAAGLKAHLM Q L +H PDCGK GF+DLPE+
Sbjct: 6   AGASIVGVNCHFDPTISLQTVKLMKEGLQAAGLKAHLMSQPLAYHTPDCGKQGFIDLPEF 65

Query: 791 PFALEPRVATRWDIQKYAREAYNLGIRYIGGCCGFEPYHIRAIAEELAPERGF-SSSFKE 967
           PF LEPRVATRWDIQKYAREAYNLG+RYIGGCCGFEPYHIRAIAEELAPERGF   + ++
Sbjct: 66  PFGLEPRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPPASEK 125

Query: 968 HGSWGSGLNM 997
           HGSWGS L+M
Sbjct: 126 HGSWGSALDM 135


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,688,639
Number of extensions: 811782
Number of successful extensions: 2529
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2520
Number of HSP's successfully gapped: 4
Length of query: 332
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 233
Effective length of database: 8,879,129
Effective search space: 2068837057
Effective search space used: 2068837057
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013684
         (997 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_075022.2| betaine--homocysteine S-methyltransferase 2 [Mu...   543   e-155
Alignment   gi|NP_057877.1| betaine--homocysteine S-methyltransferase 1 [Mu...   474   e-134

>ref|NP_075022.2| betaine--homocysteine S-methyltransferase 2 [Mus musculus].
          Length = 363

 Score =  543 bits (1400), Expect = e-155
 Identities = 266/328 (81%), Positives = 285/328 (86%), Gaps = 1/328 (0%)
 Frame = +2

Query: 17  MAPAGSPRAKKGILERLDAGEVVVGDGGFLLTLEKRGYVKAGLWTPEAVVEHPNAVRQLH 196
           MAPAGS RAKKGILERLD+GEVVVGD GFL TLEKRG+VKAGLWTPEAVVEHP+AVRQLH
Sbjct: 1   MAPAGSTRAKKGILERLDSGEVVVGDSGFLFTLEKRGFVKAGLWTPEAVVEHPSAVRQLH 60

Query: 197 MEFLRAGSNVMQTFTFSANEDNMESQWEAVNAAACDLAQEVAGKGDALVAGGLCQTSLYK 376
            EFLRAG++V+QTFTFSA EDNM S+WEAVNAAACDLAQEVAG G ALVAGG+CQTSLYK
Sbjct: 61  TEFLRAGADVLQTFTFSATEDNMASKWEAVNAAACDLAQEVAGGGGALVAGGICQTSLYK 120

Query: 377 HHKDEDRIKKLFRLQLEVFVRKNVDFLIXXXXXXXXXXXXXXXXLKESGKPVAATMCIGP 556
           +HKDE RIK +FRLQLEVF RKNVDFLI                L+E G PVA TMCIGP
Sbjct: 121 YHKDETRIKNIFRLQLEVFARKNVDFLIAEYFEHVEEAVWAVEVLREVGAPVAVTMCIGP 180

Query: 557 EGDMHGVTPGECAVKLVKAGASIIGVNCRFGPWTSLKTMRLMKEGLQAAGLKAHLMVQSL 736
           EGDMH VTPGECAVKL +AGA IIGVNCRFGPWTSL+TM+LMKEGL+ A L+AHLMVQ L
Sbjct: 181 EGDMHDVTPGECAVKLARAGADIIGVNCRFGPWTSLQTMKLMKEGLRDASLQAHLMVQCL 240

Query: 737 VFHMPDCGKGGFVDLPEYPFALEPRVATRWDIQKYAREAYNLGIRYIGGCCGFEPYHIRA 916
            FH PDCGKGGFVDLPEYPF LEPRVATRWDIQKYAREAYNLGIRYIGGCCGFEPYHIRA
Sbjct: 241 GFHTPDCGKGGFVDLPEYPFGLEPRVATRWDIQKYAREAYNLGIRYIGGCCGFEPYHIRA 300

Query: 917 IAEELAPERGF-SSSFKEHGSWGSGLNM 997
           IAEELAPERGF   + ++HGSWGSGLNM
Sbjct: 301 IAEELAPERGFLPPASEKHGSWGSGLNM 328


>ref|NP_057877.1| betaine--homocysteine S-methyltransferase 1 [Mus musculus].
          Length = 407

 Score =  474 bits (1219), Expect = e-134
 Identities = 235/337 (69%), Positives = 269/337 (79%), Gaps = 10/337 (2%)
 Frame = +2

Query: 17   MAPAGSPRAKKGILERLDAGEVVVGDGGFLLTLEKRGYVKAGLWTPEAVVEHPNAVRQLH 196
            MAP    +AKKGILERL+AGEVV+GDGGF+  LEKRGYVKAG WTPEA VEHP AVRQLH
Sbjct: 1    MAPVAGKKAKKGILERLNAGEVVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 60

Query: 197  MEFLRAGSNVMQTFTFSANEDNMESQW---------EAVNAAACDLAQEVAGKGDALVAG 349
             EFLRAGSNVMQTFTF A+ED +E++          + VN AACD+A++VA +GDALVAG
Sbjct: 61   REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG 120

Query: 350  GLCQTSLYKHHKDEDRIKKLFRLQLEVFVRKNVDFLIXXXXXXXXXXXXXXXXLKESGKP 529
            G+ QT  Y   K E  +KK+FR QLEVF++KNVDFLI                LK SGKP
Sbjct: 121  GVSQTPSYLSCKSEVEVKKIFRQQLEVFMKKNVDFLIAEYFEHVEEAVWAVEALKASGKP 180

Query: 530  VAATMCIGPEGDMHGVTPGECAVKLVKAGASIIGVNCRFGPWTSLKTMRLMKEGLQAAGL 709
            VAATMCIGPEGD+HGV PGECAV+LVKAGASI+GVNC F P  SL+T++LMKEGL+AA L
Sbjct: 181  VAATMCIGPEGDLHGVPPGECAVRLVKAGASIVGVNCHFDPSVSLQTVKLMKEGLEAARL 240

Query: 710  KAHLMVQSLVFHMPDCGKGGFVDLPEYPFALEPRVATRWDIQKYAREAYNLGIRYIGGCC 889
            KA+LM Q L +H PDCGK GF+DLPE+PF LEPRVATRWDIQKYAREAYNLG+RYIGGCC
Sbjct: 241  KAYLMSQPLAYHTPDCGKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 300

Query: 890  GFEPYHIRAIAEELAPERGF-SSSFKEHGSWGSGLNM 997
            GFEPYHIRAIAEELAPERGF   + ++HGSWGSGL+M
Sbjct: 301  GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLDM 337


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,182,801
Number of extensions: 1067024
Number of successful extensions: 3277
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3271
Number of HSP's successfully gapped: 2
Length of query: 332
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 230
Effective length of database: 12,553,887
Effective search space: 2887394010
Effective search space used: 2887394010
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013684
         (997 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_060084.2| betaine--homocysteine S-methyltransferase 2 iso...   540   e-154
Alignment   gi|NP_001704.2| betaine--homocysteine S-methyltransferase 1 [Ho...   470   e-133
Alignment   gi|NP_001171476.1| betaine--homocysteine S-methyltransferase 2 ...   290   1e-78

>ref|NP_060084.2| betaine--homocysteine S-methyltransferase 2 isoform 1 [Homo
           sapiens].
          Length = 363

 Score =  540 bits (1392), Expect = e-154
 Identities = 265/328 (80%), Positives = 287/328 (87%), Gaps = 1/328 (0%)
 Frame = +2

Query: 17  MAPAGSPRAKKGILERLDAGEVVVGDGGFLLTLEKRGYVKAGLWTPEAVVEHPNAVRQLH 196
           MAPAG P AKKGILERL++GEVV+GDG FL+TLEKRGYVKAGLWTPEAV+EHP+AVRQLH
Sbjct: 1   MAPAGRPGAKKGILERLESGEVVIGDGSFLITLEKRGYVKAGLWTPEAVIEHPDAVRQLH 60

Query: 197 MEFLRAGSNVMQTFTFSANEDNMESQWEAVNAAACDLAQEVAGKGDALVAGGLCQTSLYK 376
           MEFLRAGSNVMQTFTFSA+EDNMES+WE VNAAACDLA+EVAGKGDALVAGG+CQTS+YK
Sbjct: 61  MEFLRAGSNVMQTFTFSASEDNMESKWEDVNAAACDLAREVAGKGDALVAGGICQTSIYK 120

Query: 377 HHKDEDRIKKLFRLQLEVFVRKNVDFLIXXXXXXXXXXXXXXXXLKESGKPVAATMCIGP 556
           + KDE RIKKLFR QLEVF  KNVDFLI                LKES +PVA TMCIGP
Sbjct: 121 YQKDEARIKKLFRQQLEVFAWKNVDFLIAEYFEHVEEAVWAVEVLKESDRPVAVTMCIGP 180

Query: 557 EGDMHGVTPGECAVKLVKAGASIIGVNCRFGPWTSLKTMRLMKEGLQAAGLKAHLMVQSL 736
           EGDMH +TPGECAV+LVKAGASI+GVNCRFGP TSLKTM LMKEGL+ AGLKAHLMVQ L
Sbjct: 181 EGDMHDITPGECAVRLVKAGASIVGVNCRFGPDTSLKTMELMKEGLEWAGLKAHLMVQPL 240

Query: 737 VFHMPDCGKGGFVDLPEYPFALEPRVATRWDIQKYAREAYNLGIRYIGGCCGFEPYHIRA 916
            FH PDCGK GFVDLPEYPF LE RVATRWDIQKYAREAYNLG+RYIGGCCGFEPYHIRA
Sbjct: 241 GFHAPDCGKEGFVDLPEYPFGLESRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRA 300

Query: 917 IAEELAPERGF-SSSFKEHGSWGSGLNM 997
           IAEELAPERGF   + ++HGSWGSGL+M
Sbjct: 301 IAEELAPERGFLPPASEKHGSWGSGLDM 328


>ref|NP_001704.2| betaine--homocysteine S-methyltransferase 1 [Homo sapiens].
          Length = 406

 Score =  470 bits (1210), Expect = e-133
 Identities = 234/337 (69%), Positives = 266/337 (78%), Gaps = 10/337 (2%)
 Frame = +2

Query: 17   MAPAGSPRAKKGILERLDAGEVVVGDGGFLLTLEKRGYVKAGLWTPEAVVEHPNAVRQLH 196
            M P G  +AKKGILERL+AGE+V+GDGGF+  LEKRGYVKAG WTPEA VEHP AVRQLH
Sbjct: 1    MPPVGGKKAKKGILERLNAGEIVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 60

Query: 197  MEFLRAGSNVMQTFTFSANEDNMESQW---------EAVNAAACDLAQEVAGKGDALVAG 349
             EFLRAGSNVMQTFTF A+ED +E++          + VN AACD+A++VA +GDALVAG
Sbjct: 61   REFLRAGSNVMQTFTFYASEDKLENRGNYVLEKISGQEVNEAACDIARQVADEGDALVAG 120

Query: 350  GLCQTSLYKHHKDEDRIKKLFRLQLEVFVRKNVDFLIXXXXXXXXXXXXXXXXLKESGKP 529
            G+ QT  Y   K E  +KK+F  QLEVF++KNVDFLI                L  SGKP
Sbjct: 121  GVSQTPSYLSCKSETEVKKVFLQQLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIASGKP 180

Query: 530  VAATMCIGPEGDMHGVTPGECAVKLVKAGASIIGVNCRFGPWTSLKTMRLMKEGLQAAGL 709
            VAATMCIGPEGD+HGV PGECAV+LVKAGASIIGVNC F P  SLKT++LMKEGL+AA L
Sbjct: 181  VAATMCIGPEGDLHGVPPGECAVRLVKAGASIIGVNCHFDPTISLKTVKLMKEGLEAARL 240

Query: 710  KAHLMVQSLVFHMPDCGKGGFVDLPEYPFALEPRVATRWDIQKYAREAYNLGIRYIGGCC 889
            KAHLM Q L +H PDC K GF+DLPE+PF LEPRVATRWDIQKYAREAYNLG+RYIGGCC
Sbjct: 241  KAHLMSQPLAYHTPDCNKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 300

Query: 890  GFEPYHIRAIAEELAPERGF-SSSFKEHGSWGSGLNM 997
            GFEPYHIRAIAEELAPERGF   + ++HGSWGSGL+M
Sbjct: 301  GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLDM 337


>ref|NP_001171476.1| betaine--homocysteine S-methyltransferase 2 isoform 2 [Homo
           sapiens].
          Length = 299

 Score =  290 bits (742), Expect = 1e-78
 Identities = 138/164 (84%), Positives = 148/164 (90%), Gaps = 1/164 (0%)
 Frame = +2

Query: 509 LKESGKPVAATMCIGPEGDMHGVTPGECAVKLVKAGASIIGVNCRFGPWTSLKTMRLMKE 688
           LKES +PVA TMCIGPEGDMH +TPGECAV+LVKAGASI+GVNCRFGP TSLKTM LMKE
Sbjct: 101 LKESDRPVAVTMCIGPEGDMHDITPGECAVRLVKAGASIVGVNCRFGPDTSLKTMELMKE 160

Query: 689 GLQAAGLKAHLMVQSLVFHMPDCGKGGFVDLPEYPFALEPRVATRWDIQKYAREAYNLGI 868
           GL+ AGLKAHLMVQ L FH PDCGK GFVDLPEYPF LE RVATRWDIQKYAREAYNLG+
Sbjct: 161 GLEWAGLKAHLMVQPLGFHAPDCGKEGFVDLPEYPFGLESRVATRWDIQKYAREAYNLGV 220

Query: 869 RYIGGCCGFEPYHIRAIAEELAPERGF-SSSFKEHGSWGSGLNM 997
           RYIGGCCGFEPYHIRAIAEELAPERGF   + ++HGSWGSGL+M
Sbjct: 221 RYIGGCCGFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLDM 264



 Score =  162 bits (409), Expect = 6e-40
 Identities = 85/115 (73%), Positives = 96/115 (83%), Gaps = 1/115 (0%)
 Frame = +2

Query: 17  MAPAGSPRAKKGILERLDAGEVVVGDGGFLLTLEKRGYVKAGLWTPEAVVEHPNAVRQLH 196
           MAPAG P AKKGILERL++GEVV+GDG FL+TLEKRGYVKAGLWTPEAV+EHP+AVRQLH
Sbjct: 1   MAPAGRPGAKKGILERLESGEVVIGDGSFLITLEKRGYVKAGLWTPEAVIEHPDAVRQLH 60

Query: 197 MEFLRAGSNVMQTFTFSANEDNMESQW-EAVNAAACDLAQEVAGKGDALVAGGLC 358
           MEFLRAGSNVMQTFTFSA+EDNMES++ E V  A    A EV  + D  VA  +C
Sbjct: 61  MEFLRAGSNVMQTFTFSASEDNMESKYFEHVEEAV--WAVEVLKESDRPVAVTMC 113


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,921,162
Number of extensions: 1279567
Number of successful extensions: 4013
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4002
Number of HSP's successfully gapped: 4
Length of query: 332
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 229
Effective length of database: 14,901,872
Effective search space: 3412528688
Effective search space used: 3412528688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013684
         (997 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr02                                                         389   e-105
gb|JH118568.1| Sus scrofa unplaced genomic scaffold ChrUScaf1048      293   9e-77

>Sscrofa_Chr02 
||          Length = 162569375

 Score =  389 bits (196), Expect = e-105
 Identities = 196/196 (100%)
 Strand = Plus / Minus

                                                                            
Query: 271      tcagtgggaagctgtcaacgctgctgcctgtgacctcgcccaagaagtggccggcaaagg 330
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89468789 tcagtgggaagctgtcaacgctgctgcctgtgacctcgcccaagaagtggccggcaaagg 89468730

                                                                            
Query: 331      tgatgctttggtagcaggggggctctgccagacttcgttatacaaacaccacaaggatga 390
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89468729 tgatgctttggtagcaggggggctctgccagacttcgttatacaaacaccacaaggatga 89468670

                                                                            
Query: 391      agatagaattaaaaaactttttcgactacagctcgaagtatttgtcaggaaaaacgtgga 450
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89468669 agatagaattaaaaaactttttcgactacagctcgaagtatttgtcaggaaaaacgtgga 89468610

                                
Query: 451      cttcttgattgcagag 466
                ||||||||||||||||
Sbjct: 89468609 cttcttgattgcagag 89468594



 Score =  367 bits (185), Expect = 8e-99
 Identities = 185/185 (100%)
 Strand = Plus / Minus

                                                                            
Query: 613      aggggcttcaatcattggggtgaactgccgatttgggccctggaccagtctgaagacaat 672
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89465356 aggggcttcaatcattggggtgaactgccgatttgggccctggaccagtctgaagacaat 89465297

                                                                            
Query: 673      gaggctaatgaaggaaggcctgcaggctgcaggcctgaaagcacatttgatggtgcagtc 732
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89465296 gaggctaatgaaggaaggcctgcaggctgcaggcctgaaagcacatttgatggtgcagtc 89465237

                                                                            
Query: 733      cctggtgttccacatgcccgactgcggcaaaggagggtttgtggatctcccggaatatcc 792
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89465236 cctggtgttccacatgcccgactgcggcaaaggagggtttgtggatctcccggaatatcc 89465177

                     
Query: 793      ctttg 797
                |||||
Sbjct: 89465176 ctttg 89465172



 Score =  359 bits (181), Expect = 2e-96
 Identities = 200/204 (98%), Gaps = 3/204 (1%)
 Strand = Plus / Minus

                                                                            
Query: 797      gcactggagcccagagttgcaaccagatgggacattcaaaaatatgccagagaagcctac 856
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89464648 gcactggagcccagagttgcaaccagatgggacattcaaaaatatgccagagaagcctac 89464589

                                                                            
Query: 857      aacctggggatcaggtacataggagggtgctgtggatttgagccctaccacatcagggcc 916
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89464588 aacctggggatcaggtacataggagggtgctgtggatttgagccctaccacatcagggcc 89464529

                                                                            
Query: 917      attgcagaggagctggccccagaaaggggatttt--cctccagcttcaaag-aacatggc 973
                ||||||||||||||||||||||||||||||||||  |||||||||||| || ||||||||
Sbjct: 89464528 attgcagaggagctggccccagaaaggggatttttgcctccagcttcagagaaacatggc 89464469

                                        
Query: 974      agctggggaagtggtctcaatatg 997
                ||||||||||||||||||||||||
Sbjct: 89464468 agctggggaagtggtctcaatatg 89464445



 Score =  299 bits (151), Expect = 2e-78
 Identities = 151/151 (100%)
 Strand = Plus / Minus

                                                                            
Query: 465      agtattttgaatatgctgaggaagctgtgtgggctgtggaagtcttaaaagaatctggaa 524
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89466600 agtattttgaatatgctgaggaagctgtgtgggctgtggaagtcttaaaagaatctggaa 89466541

                                                                            
Query: 525      aacccgtggcagccaccatgtgcataggcccagagggagacatgcatggcgtgacccctg 584
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89466540 aacccgtggcagccaccatgtgcataggcccagagggagacatgcatggcgtgacccctg 89466481

                                               
Query: 585      gcgaatgcgctgtgaagctggtgaaggcagg 615
                |||||||||||||||||||||||||||||||
Sbjct: 89466480 gcgaatgcgctgtgaagctggtgaaggcagg 89466450



 Score =  293 bits (148), Expect = 9e-77
 Identities = 182/191 (95%), Gaps = 3/191 (1%)
 Strand = Plus / Minus

                                                                            
Query: 799      actggagcccagagttgcaaccagatgggacattcaaaaatatgccagagaagcctacaa 858
                |||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 89411033 actggagcccagagttgcaaccagatgggatattcaaaaatacgccagagaggcctacaa 89410974

                                                                            
Query: 859      cctggggatcaggtacataggagggtgctgtggatttgagccctaccacatcagggccat 918
                ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 89410973 cctgggggtcaggtacataggcgggtgctgtggatttgagccctaccacatcagggccat 89410914

                                                                            
Query: 919      tgcagaggagctggccccagaaaggggatttt--cctccagcttcaaag-aacatggcag 975
                ||||||||||||||||||||||||||||||||  |||||||||||| || ||||||||||
Sbjct: 89410913 tgcagaggagctggccccagaaaggggatttttgcctccagcttcagagaaacatggcag 89410854

                           
Query: 976      ctggggaagtg 986
                |||||||||||
Sbjct: 89410853 ctggggaagtg 89410843



 Score =  268 bits (135), Expect = 5e-69
 Identities = 135/135 (100%)
 Strand = Plus / Minus

                                                                            
Query: 48       agggcattttggagcgtttggatgctggggaggttgtggttggagatggcggctttctcc 107
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89471804 agggcattttggagcgtttggatgctggggaggttgtggttggagatggcggctttctcc 89471745

                                                                            
Query: 108      taactctggagaagaggggctacgtgaaggcagggctctggacaccagaggccgtggtag 167
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89471744 taactctggagaagaggggctacgtgaaggcagggctctggacaccagaggccgtggtag 89471685

                               
Query: 168      agcatccaaatgcag 182
                |||||||||||||||
Sbjct: 89471684 agcatccaaatgcag 89471670



 Score =  186 bits (94), Expect = 2e-44
 Identities = 94/94 (100%)
 Strand = Plus / Minus

                                                                            
Query: 181      agttcgtcagcttcacatggaattcttgagagcgggatcgaatgtcatgcagactttcac 240
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89469894 agttcgtcagcttcacatggaattcttgagagcgggatcgaatgtcatgcagactttcac 89469835

                                                  
Query: 241      cttttctgccaatgaggacaatatggaaagtcag 274
                ||||||||||||||||||||||||||||||||||
Sbjct: 89469834 cttttctgccaatgaggacaatatggaaagtcag 89469801



 Score =  107 bits (54), Expect = 1e-20
 Identities = 102/118 (86%)
 Strand = Plus / Minus

                                                                            
Query: 465      agtattttgaatatgctgaggaagctgtgtgggctgtggaagtcttaaaagaatctggaa 524
                ||||||||||| ||| ||| || ||||||||||| || |||| ||| |||| |||||| |
Sbjct: 89416744 agtattttgaacatgttgaagaggctgtgtgggcagttgaagccttgaaagcatctggga 89416685

                                                                          
Query: 525      aacccgtggcagccaccatgtgcataggcccagagggagacatgcatggcgtgacccc 582
                | || |||||||| ||||||||||| ||||||||||||||| |||| |||||||||||
Sbjct: 89416684 agcctgtggcagcgaccatgtgcatcggcccagagggagacctgcacggcgtgacccc 89416627



 Score = 99.6 bits (50), Expect = 3e-18
 Identities = 50/50 (100%)
 Strand = Plus / Minus

                                                                  
Query: 1        gcacagccgcggcgagatggcaccggctggaagtccccgcgccaagaagg 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89475621 gcacagccgcggcgagatggcaccggctggaagtccccgcgccaagaagg 89475572



 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 70/82 (85%)
 Strand = Plus / Minus

                                                                            
Query: 180      cagttcgtcagcttcacatggaattcttgagagcgggatcgaatgtcatgcagactttca 239
                ||||||| ||||||||   ||| ||| | ||||| |||||||||||||||||||| ||||
Sbjct: 89419252 cagttcgccagcttcatcgggagttcctcagagccggatcgaatgtcatgcagaccttca 89419193

                                      
Query: 240      ccttttctgccaatgaggacaa 261
                |||| | ||||| |||||||||
Sbjct: 89419192 ccttctatgccagtgaggacaa 89419171



 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 71/85 (83%)
 Strand = Plus / Minus

                                                                            
Query: 72       ctggggaggttgtggttggagatggcggctttctcctaactctggagaagaggggctacg 131
                |||| ||||||||| ||||||| || || ||| || |  ||||||||||||||||||| |
Sbjct: 89426190 ctggagaggttgtgattggagacggagggtttgtctttgctctggagaagaggggctatg 89426131

                                         
Query: 132      tgaaggcagggctctggacaccaga 156
                |||| || |||| |||||| |||||
Sbjct: 89426130 tgaaagccgggccctggaccccaga 89426106


>gb|JH118568.1| Sus scrofa unplaced genomic scaffold ChrUScaf1048
          Length = 105113

 Score =  293 bits (148), Expect = 9e-77
 Identities = 182/191 (95%), Gaps = 3/191 (1%)
 Strand = Plus / Plus

                                                                         
Query: 799   actggagcccagagttgcaaccagatgggacattcaaaaatatgccagagaagcctacaa 858
             |||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 40258 actggagcccagagttgcaaccagatgggatattcaaaaatacgccagagaggcctacaa 40317

                                                                         
Query: 859   cctggggatcaggtacataggagggtgctgtggatttgagccctaccacatcagggccat 918
             ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 40318 cctgggggtcaggtacataggcgggtgctgtggatttgagccctaccacatcagggccat 40377

                                                                         
Query: 919   tgcagaggagctggccccagaaaggggatttt--cctccagcttcaaag-aacatggcag 975
             ||||||||||||||||||||||||||||||||  |||||||||||| || ||||||||||
Sbjct: 40378 tgcagaggagctggccccagaaaggggatttttgcctccagcttcagagaaacatggcag 40437

                        
Query: 976   ctggggaagtg 986
             |||||||||||
Sbjct: 40438 ctggggaagtg 40448



 Score =  107 bits (54), Expect = 1e-20
 Identities = 102/118 (86%)
 Strand = Plus / Plus

                                                                         
Query: 465   agtattttgaatatgctgaggaagctgtgtgggctgtggaagtcttaaaagaatctggaa 524
             ||||||||||| ||| ||| || ||||||||||| || |||| ||| |||| |||||| |
Sbjct: 34747 agtattttgaacatgttgaagaggctgtgtgggcagttgaagccttgaaagcatctggga 34806

                                                                       
Query: 525   aacccgtggcagccaccatgtgcataggcccagagggagacatgcatggcgtgacccc 582
             | || |||||||| ||||||||||| ||||||||||||||| |||| |||||||||||
Sbjct: 34807 agcctgtggcagcgaccatgtgcatcggcccagagggagacctgcacggcgtgacccc 34864



 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 70/82 (85%)
 Strand = Plus / Plus

                                                                         
Query: 180   cagttcgtcagcttcacatggaattcttgagagcgggatcgaatgtcatgcagactttca 239
             ||||||| ||||||||   ||| ||| | ||||| |||||||||||||||||||| ||||
Sbjct: 32316 cagttcgccagcttcatcgggagttcctcagagccggatcgaatgtcatgcagaccttca 32375

                                   
Query: 240   ccttttctgccaatgaggacaa 261
             |||| | ||||| |||||||||
Sbjct: 32376 ccttctatgccagtgaggacaa 32397



 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 71/85 (83%)
 Strand = Plus / Plus

                                                                         
Query: 72    ctggggaggttgtggttggagatggcggctttctcctaactctggagaagaggggctacg 131
             |||| ||||||||| ||||||| || || ||| || |  ||||||||||||||||||| |
Sbjct: 28218 ctggagaggttgtgattggagacggagggtttgtctttgctctggagaagaggggctatg 28277

                                      
Query: 132   tgaaggcagggctctggacaccaga 156
             |||| || |||| |||||| |||||
Sbjct: 28278 tgaaagccgggccctggaccccaga 28302


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,345,294
Number of extensions: 199
Number of successful extensions: 199
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 15
Length of query: 997
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 976
Effective length of database: 2,808,413,156
Effective search space: 2741011240256
Effective search space used: 2741011240256
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)