Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013684
(997 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546051.2| PREDICTED: similar to betaine-homocysteine meth... 550 e-157
Alignment gi|XP_536313.2| PREDICTED: similar to Betaine--homocysteine S-m... 472 e-133
>ref|XP_546051.2| PREDICTED: similar to betaine-homocysteine methyltransferase 2
[Canis familiaris].
Length = 363
Score = 550 bits (1418), Expect = e-157
Identities = 268/328 (81%), Positives = 292/328 (89%), Gaps = 1/328 (0%)
Frame = +2
Query: 17 MAPAGSPRAKKGILERLDAGEVVVGDGGFLLTLEKRGYVKAGLWTPEAVVEHPNAVRQLH 196
MAP G P AKKGILERLD+GEVVVGDG FL+TLEKRGYVKAGLWTPEA+V+HP+AVRQLH
Sbjct: 1 MAPVGGPGAKKGILERLDSGEVVVGDGSFLITLEKRGYVKAGLWTPEAIVDHPDAVRQLH 60
Query: 197 MEFLRAGSNVMQTFTFSANEDNMESQWEAVNAAACDLAQEVAGKGDALVAGGLCQTSLYK 376
MEFLRAGSNVMQTFTFSA+EDNM S+WE VNAAACDLA+EVAGKGDALVAGG+ QTS+Y+
Sbjct: 61 MEFLRAGSNVMQTFTFSASEDNMGSKWEDVNAAACDLAREVAGKGDALVAGGISQTSVYR 120
Query: 377 HHKDEDRIKKLFRLQLEVFVRKNVDFLIXXXXXXXXXXXXXXXXLKESGKPVAATMCIGP 556
HHKDE R+KKLF+LQLEVF+RKNVDFLI LKESGKPVA TMCIGP
Sbjct: 121 HHKDEARVKKLFQLQLEVFIRKNVDFLIAEYFEHAEEAVWAVEVLKESGKPVAVTMCIGP 180
Query: 557 EGDMHGVTPGECAVKLVKAGASIIGVNCRFGPWTSLKTMRLMKEGLQAAGLKAHLMVQSL 736
+GDM GV PGECAVKLVKAGA+I+GVNCRFGP TSLKTM+LMKEGLQAAGL+AHL+VQSL
Sbjct: 181 DGDMCGVKPGECAVKLVKAGAAIVGVNCRFGPSTSLKTMKLMKEGLQAAGLQAHLIVQSL 240
Query: 737 VFHMPDCGKGGFVDLPEYPFALEPRVATRWDIQKYAREAYNLGIRYIGGCCGFEPYHIRA 916
FH PDCGKGG VDLPEYPF LEPRVATRWDIQKYAREAYNLG+RYIGGCCGFEPYHIRA
Sbjct: 241 GFHTPDCGKGGVVDLPEYPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRA 300
Query: 917 IAEELAPERGF-SSSFKEHGSWGSGLNM 997
IAEELAPERGF + ++HGSWGSGLNM
Sbjct: 301 IAEELAPERGFLPPASEKHGSWGSGLNM 328
>ref|XP_536313.2| PREDICTED: similar to Betaine--homocysteine S-methyltransferase
[Canis familiaris].
Length = 407
Score = 472 bits (1215), Expect = e-133
Identities = 233/337 (69%), Positives = 269/337 (79%), Gaps = 10/337 (2%)
Frame = +2
Query: 17 MAPAGSPRAKKGILERLDAGEVVVGDGGFLLTLEKRGYVKAGLWTPEAVVEHPNAVRQLH 196
MAP G +A++GILERL++GEVV+GDGGF+ LEKRGYVKAG WTPEA VEHP AVRQLH
Sbjct: 1 MAPVGGRKARRGILERLNSGEVVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 60
Query: 197 MEFLRAGSNVMQTFTFSANEDNMESQW---------EAVNAAACDLAQEVAGKGDALVAG 349
EFLRAGSNVMQTFTF A+ED +E++ + VN AACD+A++VA +GDALVAG
Sbjct: 61 REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG 120
Query: 350 GLCQTSLYKHHKDEDRIKKLFRLQLEVFVRKNVDFLIXXXXXXXXXXXXXXXXLKESGKP 529
G+ QT Y K E +KK+F+ QLEVFV+KNVDFLI LK SGKP
Sbjct: 121 GVSQTPSYLSCKSETEVKKVFQQQLEVFVKKNVDFLIAEYFEHVEEAVWAVEALKASGKP 180
Query: 530 VAATMCIGPEGDMHGVTPGECAVKLVKAGASIIGVNCRFGPWTSLKTMRLMKEGLQAAGL 709
VAATMCIGPEGD+HGV+PGECAV+LVKAGASI+GVNC F P SL+T++LMKEGL AA L
Sbjct: 181 VAATMCIGPEGDLHGVSPGECAVRLVKAGASIVGVNCHFDPTISLQTVKLMKEGLDAARL 240
Query: 710 KAHLMVQSLVFHMPDCGKGGFVDLPEYPFALEPRVATRWDIQKYAREAYNLGIRYIGGCC 889
KAHLM Q L +H PDC K GF+DLPE+PF LEPRVATRWDIQKYAREAYNLG+RYIGGCC
Sbjct: 241 KAHLMSQPLAYHTPDCNKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 300
Query: 890 GFEPYHIRAIAEELAPERGF-SSSFKEHGSWGSGLNM 997
GFEPYHIRAIAEELAPERGF + ++HGSWGSGL+M
Sbjct: 301 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLDM 337
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,705,173
Number of extensions: 1293676
Number of successful extensions: 4042
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4033
Number of HSP's successfully gapped: 2
Length of query: 332
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 229
Effective length of database: 15,440,896
Effective search space: 3535965184
Effective search space used: 3535965184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013684
(997 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001011679.1| betaine--homocysteine S-methyltransferase 1 ... 479 e-135
>ref|NP_001011679.1| betaine--homocysteine S-methyltransferase 1 [Bos taurus].
Length = 407
Score = 479 bits (1232), Expect = e-135
Identities = 236/337 (70%), Positives = 270/337 (80%), Gaps = 10/337 (2%)
Frame = +2
Query: 17 MAPAGSPRAKKGILERLDAGEVVVGDGGFLLTLEKRGYVKAGLWTPEAVVEHPNAVRQLH 196
MAPAG KKGILERL++GEV++GDGGF+ LEKRGYVKAG WTPEA VEHP AVRQLH
Sbjct: 1 MAPAGGKNVKKGILERLNSGEVIIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 60
Query: 197 MEFLRAGSNVMQTFTFSANEDNMESQW---------EAVNAAACDLAQEVAGKGDALVAG 349
EFLRAGSNVMQTFTF A+ED +E++ + VN AACD+A++VA +GDALVAG
Sbjct: 61 REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG 120
Query: 350 GLCQTSLYKHHKDEDRIKKLFRLQLEVFVRKNVDFLIXXXXXXXXXXXXXXXXLKESGKP 529
G+ QT Y K E +KK+F+ QLEVFV+KNVDFLI LK SGKP
Sbjct: 121 GVSQTPSYLSCKSETEVKKVFQQQLEVFVKKNVDFLIAEYFEHVEEAVWAVEALKASGKP 180
Query: 530 VAATMCIGPEGDMHGVTPGECAVKLVKAGASIIGVNCRFGPWTSLKTMRLMKEGLQAAGL 709
VAATMCIGPEGD+H VTPGECAV+LVKAGASI+GVNC F P SL+T++LMKEGL+AAGL
Sbjct: 181 VAATMCIGPEGDLHSVTPGECAVRLVKAGASIVGVNCHFDPTISLQTVKLMKEGLEAAGL 240
Query: 710 KAHLMVQSLVFHMPDCGKGGFVDLPEYPFALEPRVATRWDIQKYAREAYNLGIRYIGGCC 889
KAHLM Q L +H PDCGK GF+DLPE+PF LEPRVATRWDIQKYAREAYNLG+RYIGGCC
Sbjct: 241 KAHLMSQPLAYHTPDCGKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 300
Query: 890 GFEPYHIRAIAEELAPERGF-SSSFKEHGSWGSGLNM 997
GFEPYHIRAIAEELAPERGF + ++HGSWGSGL+M
Sbjct: 301 GFEPYHIRAIAEELAPERGFLPLASEKHGSWGSGLDM 337
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,923,699
Number of extensions: 1260073
Number of successful extensions: 4058
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4051
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 229
Effective length of database: 14,273,310
Effective search space: 3268587990
Effective search space used: 3268587990
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013684
(997 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001191700.1| betaine--homocysteine S-methyltransferase 2 ... 616 e-177
Alignment gi|NP_001186971.1| betaine--homocysteine S-methyltransferase 1 ... 481 e-136
Alignment gi|XP_003123783.2| PREDICTED: betaine--homocysteine S-methyltra... 223 1e-58
Alignment gi|XP_003123788.2| PREDICTED: betaine--homocysteine S-methyltra... 221 4e-58
>ref|NP_001191700.1| betaine--homocysteine S-methyltransferase 2 [Sus scrofa].
Length = 363
Score = 616 bits (1589), Expect = e-177
Identities = 305/328 (92%), Positives = 308/328 (93%), Gaps = 1/328 (0%)
Frame = +2
Query: 17 MAPAGSPRAKKGILERLDAGEVVVGDGGFLLTLEKRGYVKAGLWTPEAVVEHPNAVRQLH 196
MAPAGSPRAKKGILERLDAGEVVVGDGGFLLTLEKRGYVKAGLWTPEAVVEHPNAVRQLH
Sbjct: 1 MAPAGSPRAKKGILERLDAGEVVVGDGGFLLTLEKRGYVKAGLWTPEAVVEHPNAVRQLH 60
Query: 197 MEFLRAGSNVMQTFTFSANEDNMESQWEAVNAAACDLAQEVAGKGDALVAGGLCQTSLYK 376
MEFLRAGSNVMQTFTFSANEDNMESQWEAVNAAACDLAQEVAGKGDALVAGGLCQTSLYK
Sbjct: 61 MEFLRAGSNVMQTFTFSANEDNMESQWEAVNAAACDLAQEVAGKGDALVAGGLCQTSLYK 120
Query: 377 HHKDEDRIKKLFRLQLEVFVRKNVDFLIXXXXXXXXXXXXXXXXLKESGKPVAATMCIGP 556
HHKDEDRIKKLFRLQLEVFVRKNVDFLI LKESGKPVAATMCIGP
Sbjct: 121 HHKDEDRIKKLFRLQLEVFVRKNVDFLIAEYFEYAEEAVWAVEVLKESGKPVAATMCIGP 180
Query: 557 EGDMHGVTPGECAVKLVKAGASIIGVNCRFGPWTSLKTMRLMKEGLQAAGLKAHLMVQSL 736
EGDMHGVTPGECAVKLVKAGASIIGVNCRFGPWTSLKTMRLMKEGLQAAGLKAHLMVQSL
Sbjct: 181 EGDMHGVTPGECAVKLVKAGASIIGVNCRFGPWTSLKTMRLMKEGLQAAGLKAHLMVQSL 240
Query: 737 VFHMPDCGKGGFVDLPEYPFALEPRVATRWDIQKYAREAYNLGIRYIGGCCGFEPYHIRA 916
VFHMPDCGKGGFVDLPEYPFALEPRVATRWDIQKYAREAYNLGIRYIGGCCGFEPYHIRA
Sbjct: 241 VFHMPDCGKGGFVDLPEYPFALEPRVATRWDIQKYAREAYNLGIRYIGGCCGFEPYHIRA 300
Query: 917 IAEELAPERGF-SSSFKEHGSWGSGLNM 997
IAEELAPERGF + ++HGSWGSGLNM
Sbjct: 301 IAEELAPERGFLPPASEKHGSWGSGLNM 328
>ref|NP_001186971.1| betaine--homocysteine S-methyltransferase 1 [Sus scrofa].
Length = 407
Score = 481 bits (1237), Expect = e-136
Identities = 237/337 (70%), Positives = 271/337 (80%), Gaps = 10/337 (2%)
Frame = +2
Query: 17 MAPAGSPRAKKGILERLDAGEVVVGDGGFLLTLEKRGYVKAGLWTPEAVVEHPNAVRQLH 196
MAP G +AKKGILERL++GEVV+GDGGF+ LEKRGYVKAG WTPEA VEHP AVRQLH
Sbjct: 1 MAPVGDKKAKKGILERLNSGEVVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 60
Query: 197 MEFLRAGSNVMQTFTFSANEDNMESQW---------EAVNAAACDLAQEVAGKGDALVAG 349
EFLRAGSNVMQTFTF A+ED +E++ + VN AACD+A++VA +GDALVAG
Sbjct: 61 REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG 120
Query: 350 GLCQTSLYKHHKDEDRIKKLFRLQLEVFVRKNVDFLIXXXXXXXXXXXXXXXXLKESGKP 529
G+ QT Y K E +KK+FR QLEVF++KNVDFLI LK SGKP
Sbjct: 121 GVSQTPSYLSCKSETEVKKVFRQQLEVFMKKNVDFLIAEYFEHVEEAVWAVEALKASGKP 180
Query: 530 VAATMCIGPEGDMHGVTPGECAVKLVKAGASIIGVNCRFGPWTSLKTMRLMKEGLQAAGL 709
VAATMCIGPEGD+HGVTPG+CAV+LVKAGASI+GVNC F P SL+T++LMKEGLQAAGL
Sbjct: 181 VAATMCIGPEGDLHGVTPGQCAVRLVKAGASIVGVNCHFDPTISLQTVKLMKEGLQAAGL 240
Query: 710 KAHLMVQSLVFHMPDCGKGGFVDLPEYPFALEPRVATRWDIQKYAREAYNLGIRYIGGCC 889
KAHLM Q L +H PDCGK GF+DLPE+PF LEPRVATRWDIQKYAREAYNLG+RYIGGCC
Sbjct: 241 KAHLMSQPLAYHTPDCGKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 300
Query: 890 GFEPYHIRAIAEELAPERGF-SSSFKEHGSWGSGLNM 997
GFEPYHIRAIAEELAPERGF + ++HGSWGS L+M
Sbjct: 301 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSALDM 337
>ref|XP_003123783.2| PREDICTED: betaine--homocysteine S-methyltransferase 1-like,
partial [Sus scrofa].
Length = 264
Score = 223 bits (568), Expect = 1e-58
Identities = 104/134 (77%), Positives = 117/134 (87%), Gaps = 1/134 (0%)
Frame = +2
Query: 599 KLVKAGASIIGVNCRFGPWTSLKTMRLMKEGLQAAGLKAHLMVQSLVFHMPDCGKGGFVD 778
+L K GASI+GVNC F P SL+T++LMKEGLQAAGLKAHLM Q L +H PDCGK GF+D
Sbjct: 61 RLQKKGASIVGVNCHFDPTISLQTVKLMKEGLQAAGLKAHLMSQPLAYHTPDCGKQGFID 120
Query: 779 LPEYPFALEPRVATRWDIQKYAREAYNLGIRYIGGCCGFEPYHIRAIAEELAPERGF-SS 955
LPE+PF LEPRVATRWDIQKYAREAYNLG+RYIGGCCGFEPYHIRAIAEELAPERGF
Sbjct: 121 LPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPP 180
Query: 956 SFKEHGSWGSGLNM 997
+ ++HGSWGS L+M
Sbjct: 181 ASEKHGSWGSALDM 194
>ref|XP_003123788.2| PREDICTED: betaine--homocysteine S-methyltransferase 1-like [Sus
scrofa].
Length = 205
Score = 221 bits (564), Expect = 4e-58
Identities = 103/130 (79%), Positives = 115/130 (88%), Gaps = 1/130 (0%)
Frame = +2
Query: 611 AGASIIGVNCRFGPWTSLKTMRLMKEGLQAAGLKAHLMVQSLVFHMPDCGKGGFVDLPEY 790
AGASI+GVNC F P SL+T++LMKEGLQAAGLKAHLM Q L +H PDCGK GF+DLPE+
Sbjct: 6 AGASIVGVNCHFDPTISLQTVKLMKEGLQAAGLKAHLMSQPLAYHTPDCGKQGFIDLPEF 65
Query: 791 PFALEPRVATRWDIQKYAREAYNLGIRYIGGCCGFEPYHIRAIAEELAPERGF-SSSFKE 967
PF LEPRVATRWDIQKYAREAYNLG+RYIGGCCGFEPYHIRAIAEELAPERGF + ++
Sbjct: 66 PFGLEPRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPPASEK 125
Query: 968 HGSWGSGLNM 997
HGSWGS L+M
Sbjct: 126 HGSWGSALDM 135
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,688,639
Number of extensions: 811782
Number of successful extensions: 2529
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2520
Number of HSP's successfully gapped: 4
Length of query: 332
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 233
Effective length of database: 8,879,129
Effective search space: 2068837057
Effective search space used: 2068837057
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013684
(997 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_075022.2| betaine--homocysteine S-methyltransferase 2 [Mu... 543 e-155
Alignment gi|NP_057877.1| betaine--homocysteine S-methyltransferase 1 [Mu... 474 e-134
>ref|NP_075022.2| betaine--homocysteine S-methyltransferase 2 [Mus musculus].
Length = 363
Score = 543 bits (1400), Expect = e-155
Identities = 266/328 (81%), Positives = 285/328 (86%), Gaps = 1/328 (0%)
Frame = +2
Query: 17 MAPAGSPRAKKGILERLDAGEVVVGDGGFLLTLEKRGYVKAGLWTPEAVVEHPNAVRQLH 196
MAPAGS RAKKGILERLD+GEVVVGD GFL TLEKRG+VKAGLWTPEAVVEHP+AVRQLH
Sbjct: 1 MAPAGSTRAKKGILERLDSGEVVVGDSGFLFTLEKRGFVKAGLWTPEAVVEHPSAVRQLH 60
Query: 197 MEFLRAGSNVMQTFTFSANEDNMESQWEAVNAAACDLAQEVAGKGDALVAGGLCQTSLYK 376
EFLRAG++V+QTFTFSA EDNM S+WEAVNAAACDLAQEVAG G ALVAGG+CQTSLYK
Sbjct: 61 TEFLRAGADVLQTFTFSATEDNMASKWEAVNAAACDLAQEVAGGGGALVAGGICQTSLYK 120
Query: 377 HHKDEDRIKKLFRLQLEVFVRKNVDFLIXXXXXXXXXXXXXXXXLKESGKPVAATMCIGP 556
+HKDE RIK +FRLQLEVF RKNVDFLI L+E G PVA TMCIGP
Sbjct: 121 YHKDETRIKNIFRLQLEVFARKNVDFLIAEYFEHVEEAVWAVEVLREVGAPVAVTMCIGP 180
Query: 557 EGDMHGVTPGECAVKLVKAGASIIGVNCRFGPWTSLKTMRLMKEGLQAAGLKAHLMVQSL 736
EGDMH VTPGECAVKL +AGA IIGVNCRFGPWTSL+TM+LMKEGL+ A L+AHLMVQ L
Sbjct: 181 EGDMHDVTPGECAVKLARAGADIIGVNCRFGPWTSLQTMKLMKEGLRDASLQAHLMVQCL 240
Query: 737 VFHMPDCGKGGFVDLPEYPFALEPRVATRWDIQKYAREAYNLGIRYIGGCCGFEPYHIRA 916
FH PDCGKGGFVDLPEYPF LEPRVATRWDIQKYAREAYNLGIRYIGGCCGFEPYHIRA
Sbjct: 241 GFHTPDCGKGGFVDLPEYPFGLEPRVATRWDIQKYAREAYNLGIRYIGGCCGFEPYHIRA 300
Query: 917 IAEELAPERGF-SSSFKEHGSWGSGLNM 997
IAEELAPERGF + ++HGSWGSGLNM
Sbjct: 301 IAEELAPERGFLPPASEKHGSWGSGLNM 328
>ref|NP_057877.1| betaine--homocysteine S-methyltransferase 1 [Mus musculus].
Length = 407
Score = 474 bits (1219), Expect = e-134
Identities = 235/337 (69%), Positives = 269/337 (79%), Gaps = 10/337 (2%)
Frame = +2
Query: 17 MAPAGSPRAKKGILERLDAGEVVVGDGGFLLTLEKRGYVKAGLWTPEAVVEHPNAVRQLH 196
MAP +AKKGILERL+AGEVV+GDGGF+ LEKRGYVKAG WTPEA VEHP AVRQLH
Sbjct: 1 MAPVAGKKAKKGILERLNAGEVVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 60
Query: 197 MEFLRAGSNVMQTFTFSANEDNMESQW---------EAVNAAACDLAQEVAGKGDALVAG 349
EFLRAGSNVMQTFTF A+ED +E++ + VN AACD+A++VA +GDALVAG
Sbjct: 61 REFLRAGSNVMQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAG 120
Query: 350 GLCQTSLYKHHKDEDRIKKLFRLQLEVFVRKNVDFLIXXXXXXXXXXXXXXXXLKESGKP 529
G+ QT Y K E +KK+FR QLEVF++KNVDFLI LK SGKP
Sbjct: 121 GVSQTPSYLSCKSEVEVKKIFRQQLEVFMKKNVDFLIAEYFEHVEEAVWAVEALKASGKP 180
Query: 530 VAATMCIGPEGDMHGVTPGECAVKLVKAGASIIGVNCRFGPWTSLKTMRLMKEGLQAAGL 709
VAATMCIGPEGD+HGV PGECAV+LVKAGASI+GVNC F P SL+T++LMKEGL+AA L
Sbjct: 181 VAATMCIGPEGDLHGVPPGECAVRLVKAGASIVGVNCHFDPSVSLQTVKLMKEGLEAARL 240
Query: 710 KAHLMVQSLVFHMPDCGKGGFVDLPEYPFALEPRVATRWDIQKYAREAYNLGIRYIGGCC 889
KA+LM Q L +H PDCGK GF+DLPE+PF LEPRVATRWDIQKYAREAYNLG+RYIGGCC
Sbjct: 241 KAYLMSQPLAYHTPDCGKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 300
Query: 890 GFEPYHIRAIAEELAPERGF-SSSFKEHGSWGSGLNM 997
GFEPYHIRAIAEELAPERGF + ++HGSWGSGL+M
Sbjct: 301 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLDM 337
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,182,801
Number of extensions: 1067024
Number of successful extensions: 3277
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3271
Number of HSP's successfully gapped: 2
Length of query: 332
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 230
Effective length of database: 12,553,887
Effective search space: 2887394010
Effective search space used: 2887394010
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013684
(997 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060084.2| betaine--homocysteine S-methyltransferase 2 iso... 540 e-154
Alignment gi|NP_001704.2| betaine--homocysteine S-methyltransferase 1 [Ho... 470 e-133
Alignment gi|NP_001171476.1| betaine--homocysteine S-methyltransferase 2 ... 290 1e-78
>ref|NP_060084.2| betaine--homocysteine S-methyltransferase 2 isoform 1 [Homo
sapiens].
Length = 363
Score = 540 bits (1392), Expect = e-154
Identities = 265/328 (80%), Positives = 287/328 (87%), Gaps = 1/328 (0%)
Frame = +2
Query: 17 MAPAGSPRAKKGILERLDAGEVVVGDGGFLLTLEKRGYVKAGLWTPEAVVEHPNAVRQLH 196
MAPAG P AKKGILERL++GEVV+GDG FL+TLEKRGYVKAGLWTPEAV+EHP+AVRQLH
Sbjct: 1 MAPAGRPGAKKGILERLESGEVVIGDGSFLITLEKRGYVKAGLWTPEAVIEHPDAVRQLH 60
Query: 197 MEFLRAGSNVMQTFTFSANEDNMESQWEAVNAAACDLAQEVAGKGDALVAGGLCQTSLYK 376
MEFLRAGSNVMQTFTFSA+EDNMES+WE VNAAACDLA+EVAGKGDALVAGG+CQTS+YK
Sbjct: 61 MEFLRAGSNVMQTFTFSASEDNMESKWEDVNAAACDLAREVAGKGDALVAGGICQTSIYK 120
Query: 377 HHKDEDRIKKLFRLQLEVFVRKNVDFLIXXXXXXXXXXXXXXXXLKESGKPVAATMCIGP 556
+ KDE RIKKLFR QLEVF KNVDFLI LKES +PVA TMCIGP
Sbjct: 121 YQKDEARIKKLFRQQLEVFAWKNVDFLIAEYFEHVEEAVWAVEVLKESDRPVAVTMCIGP 180
Query: 557 EGDMHGVTPGECAVKLVKAGASIIGVNCRFGPWTSLKTMRLMKEGLQAAGLKAHLMVQSL 736
EGDMH +TPGECAV+LVKAGASI+GVNCRFGP TSLKTM LMKEGL+ AGLKAHLMVQ L
Sbjct: 181 EGDMHDITPGECAVRLVKAGASIVGVNCRFGPDTSLKTMELMKEGLEWAGLKAHLMVQPL 240
Query: 737 VFHMPDCGKGGFVDLPEYPFALEPRVATRWDIQKYAREAYNLGIRYIGGCCGFEPYHIRA 916
FH PDCGK GFVDLPEYPF LE RVATRWDIQKYAREAYNLG+RYIGGCCGFEPYHIRA
Sbjct: 241 GFHAPDCGKEGFVDLPEYPFGLESRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRA 300
Query: 917 IAEELAPERGF-SSSFKEHGSWGSGLNM 997
IAEELAPERGF + ++HGSWGSGL+M
Sbjct: 301 IAEELAPERGFLPPASEKHGSWGSGLDM 328
>ref|NP_001704.2| betaine--homocysteine S-methyltransferase 1 [Homo sapiens].
Length = 406
Score = 470 bits (1210), Expect = e-133
Identities = 234/337 (69%), Positives = 266/337 (78%), Gaps = 10/337 (2%)
Frame = +2
Query: 17 MAPAGSPRAKKGILERLDAGEVVVGDGGFLLTLEKRGYVKAGLWTPEAVVEHPNAVRQLH 196
M P G +AKKGILERL+AGE+V+GDGGF+ LEKRGYVKAG WTPEA VEHP AVRQLH
Sbjct: 1 MPPVGGKKAKKGILERLNAGEIVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 60
Query: 197 MEFLRAGSNVMQTFTFSANEDNMESQW---------EAVNAAACDLAQEVAGKGDALVAG 349
EFLRAGSNVMQTFTF A+ED +E++ + VN AACD+A++VA +GDALVAG
Sbjct: 61 REFLRAGSNVMQTFTFYASEDKLENRGNYVLEKISGQEVNEAACDIARQVADEGDALVAG 120
Query: 350 GLCQTSLYKHHKDEDRIKKLFRLQLEVFVRKNVDFLIXXXXXXXXXXXXXXXXLKESGKP 529
G+ QT Y K E +KK+F QLEVF++KNVDFLI L SGKP
Sbjct: 121 GVSQTPSYLSCKSETEVKKVFLQQLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIASGKP 180
Query: 530 VAATMCIGPEGDMHGVTPGECAVKLVKAGASIIGVNCRFGPWTSLKTMRLMKEGLQAAGL 709
VAATMCIGPEGD+HGV PGECAV+LVKAGASIIGVNC F P SLKT++LMKEGL+AA L
Sbjct: 181 VAATMCIGPEGDLHGVPPGECAVRLVKAGASIIGVNCHFDPTISLKTVKLMKEGLEAARL 240
Query: 710 KAHLMVQSLVFHMPDCGKGGFVDLPEYPFALEPRVATRWDIQKYAREAYNLGIRYIGGCC 889
KAHLM Q L +H PDC K GF+DLPE+PF LEPRVATRWDIQKYAREAYNLG+RYIGGCC
Sbjct: 241 KAHLMSQPLAYHTPDCNKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 300
Query: 890 GFEPYHIRAIAEELAPERGF-SSSFKEHGSWGSGLNM 997
GFEPYHIRAIAEELAPERGF + ++HGSWGSGL+M
Sbjct: 301 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLDM 337
>ref|NP_001171476.1| betaine--homocysteine S-methyltransferase 2 isoform 2 [Homo
sapiens].
Length = 299
Score = 290 bits (742), Expect = 1e-78
Identities = 138/164 (84%), Positives = 148/164 (90%), Gaps = 1/164 (0%)
Frame = +2
Query: 509 LKESGKPVAATMCIGPEGDMHGVTPGECAVKLVKAGASIIGVNCRFGPWTSLKTMRLMKE 688
LKES +PVA TMCIGPEGDMH +TPGECAV+LVKAGASI+GVNCRFGP TSLKTM LMKE
Sbjct: 101 LKESDRPVAVTMCIGPEGDMHDITPGECAVRLVKAGASIVGVNCRFGPDTSLKTMELMKE 160
Query: 689 GLQAAGLKAHLMVQSLVFHMPDCGKGGFVDLPEYPFALEPRVATRWDIQKYAREAYNLGI 868
GL+ AGLKAHLMVQ L FH PDCGK GFVDLPEYPF LE RVATRWDIQKYAREAYNLG+
Sbjct: 161 GLEWAGLKAHLMVQPLGFHAPDCGKEGFVDLPEYPFGLESRVATRWDIQKYAREAYNLGV 220
Query: 869 RYIGGCCGFEPYHIRAIAEELAPERGF-SSSFKEHGSWGSGLNM 997
RYIGGCCGFEPYHIRAIAEELAPERGF + ++HGSWGSGL+M
Sbjct: 221 RYIGGCCGFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLDM 264
Score = 162 bits (409), Expect = 6e-40
Identities = 85/115 (73%), Positives = 96/115 (83%), Gaps = 1/115 (0%)
Frame = +2
Query: 17 MAPAGSPRAKKGILERLDAGEVVVGDGGFLLTLEKRGYVKAGLWTPEAVVEHPNAVRQLH 196
MAPAG P AKKGILERL++GEVV+GDG FL+TLEKRGYVKAGLWTPEAV+EHP+AVRQLH
Sbjct: 1 MAPAGRPGAKKGILERLESGEVVIGDGSFLITLEKRGYVKAGLWTPEAVIEHPDAVRQLH 60
Query: 197 MEFLRAGSNVMQTFTFSANEDNMESQW-EAVNAAACDLAQEVAGKGDALVAGGLC 358
MEFLRAGSNVMQTFTFSA+EDNMES++ E V A A EV + D VA +C
Sbjct: 61 MEFLRAGSNVMQTFTFSASEDNMESKYFEHVEEAV--WAVEVLKESDRPVAVTMC 113
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,921,162
Number of extensions: 1279567
Number of successful extensions: 4013
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4002
Number of HSP's successfully gapped: 4
Length of query: 332
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 229
Effective length of database: 14,901,872
Effective search space: 3412528688
Effective search space used: 3412528688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013684
(997 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 389 e-105
gb|JH118568.1| Sus scrofa unplaced genomic scaffold ChrUScaf1048 293 9e-77
>Sscrofa_Chr02
|| Length = 162569375
Score = 389 bits (196), Expect = e-105
Identities = 196/196 (100%)
Strand = Plus / Minus
Query: 271 tcagtgggaagctgtcaacgctgctgcctgtgacctcgcccaagaagtggccggcaaagg 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89468789 tcagtgggaagctgtcaacgctgctgcctgtgacctcgcccaagaagtggccggcaaagg 89468730
Query: 331 tgatgctttggtagcaggggggctctgccagacttcgttatacaaacaccacaaggatga 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89468729 tgatgctttggtagcaggggggctctgccagacttcgttatacaaacaccacaaggatga 89468670
Query: 391 agatagaattaaaaaactttttcgactacagctcgaagtatttgtcaggaaaaacgtgga 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89468669 agatagaattaaaaaactttttcgactacagctcgaagtatttgtcaggaaaaacgtgga 89468610
Query: 451 cttcttgattgcagag 466
||||||||||||||||
Sbjct: 89468609 cttcttgattgcagag 89468594
Score = 367 bits (185), Expect = 8e-99
Identities = 185/185 (100%)
Strand = Plus / Minus
Query: 613 aggggcttcaatcattggggtgaactgccgatttgggccctggaccagtctgaagacaat 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89465356 aggggcttcaatcattggggtgaactgccgatttgggccctggaccagtctgaagacaat 89465297
Query: 673 gaggctaatgaaggaaggcctgcaggctgcaggcctgaaagcacatttgatggtgcagtc 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89465296 gaggctaatgaaggaaggcctgcaggctgcaggcctgaaagcacatttgatggtgcagtc 89465237
Query: 733 cctggtgttccacatgcccgactgcggcaaaggagggtttgtggatctcccggaatatcc 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89465236 cctggtgttccacatgcccgactgcggcaaaggagggtttgtggatctcccggaatatcc 89465177
Query: 793 ctttg 797
|||||
Sbjct: 89465176 ctttg 89465172
Score = 359 bits (181), Expect = 2e-96
Identities = 200/204 (98%), Gaps = 3/204 (1%)
Strand = Plus / Minus
Query: 797 gcactggagcccagagttgcaaccagatgggacattcaaaaatatgccagagaagcctac 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89464648 gcactggagcccagagttgcaaccagatgggacattcaaaaatatgccagagaagcctac 89464589
Query: 857 aacctggggatcaggtacataggagggtgctgtggatttgagccctaccacatcagggcc 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89464588 aacctggggatcaggtacataggagggtgctgtggatttgagccctaccacatcagggcc 89464529
Query: 917 attgcagaggagctggccccagaaaggggatttt--cctccagcttcaaag-aacatggc 973
|||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||
Sbjct: 89464528 attgcagaggagctggccccagaaaggggatttttgcctccagcttcagagaaacatggc 89464469
Query: 974 agctggggaagtggtctcaatatg 997
||||||||||||||||||||||||
Sbjct: 89464468 agctggggaagtggtctcaatatg 89464445
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Minus
Query: 465 agtattttgaatatgctgaggaagctgtgtgggctgtggaagtcttaaaagaatctggaa 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89466600 agtattttgaatatgctgaggaagctgtgtgggctgtggaagtcttaaaagaatctggaa 89466541
Query: 525 aacccgtggcagccaccatgtgcataggcccagagggagacatgcatggcgtgacccctg 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89466540 aacccgtggcagccaccatgtgcataggcccagagggagacatgcatggcgtgacccctg 89466481
Query: 585 gcgaatgcgctgtgaagctggtgaaggcagg 615
|||||||||||||||||||||||||||||||
Sbjct: 89466480 gcgaatgcgctgtgaagctggtgaaggcagg 89466450
Score = 293 bits (148), Expect = 9e-77
Identities = 182/191 (95%), Gaps = 3/191 (1%)
Strand = Plus / Minus
Query: 799 actggagcccagagttgcaaccagatgggacattcaaaaatatgccagagaagcctacaa 858
|||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 89411033 actggagcccagagttgcaaccagatgggatattcaaaaatacgccagagaggcctacaa 89410974
Query: 859 cctggggatcaggtacataggagggtgctgtggatttgagccctaccacatcagggccat 918
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 89410973 cctgggggtcaggtacataggcgggtgctgtggatttgagccctaccacatcagggccat 89410914
Query: 919 tgcagaggagctggccccagaaaggggatttt--cctccagcttcaaag-aacatggcag 975
|||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||
Sbjct: 89410913 tgcagaggagctggccccagaaaggggatttttgcctccagcttcagagaaacatggcag 89410854
Query: 976 ctggggaagtg 986
|||||||||||
Sbjct: 89410853 ctggggaagtg 89410843
Score = 268 bits (135), Expect = 5e-69
Identities = 135/135 (100%)
Strand = Plus / Minus
Query: 48 agggcattttggagcgtttggatgctggggaggttgtggttggagatggcggctttctcc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89471804 agggcattttggagcgtttggatgctggggaggttgtggttggagatggcggctttctcc 89471745
Query: 108 taactctggagaagaggggctacgtgaaggcagggctctggacaccagaggccgtggtag 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89471744 taactctggagaagaggggctacgtgaaggcagggctctggacaccagaggccgtggtag 89471685
Query: 168 agcatccaaatgcag 182
|||||||||||||||
Sbjct: 89471684 agcatccaaatgcag 89471670
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Minus
Query: 181 agttcgtcagcttcacatggaattcttgagagcgggatcgaatgtcatgcagactttcac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89469894 agttcgtcagcttcacatggaattcttgagagcgggatcgaatgtcatgcagactttcac 89469835
Query: 241 cttttctgccaatgaggacaatatggaaagtcag 274
||||||||||||||||||||||||||||||||||
Sbjct: 89469834 cttttctgccaatgaggacaatatggaaagtcag 89469801
Score = 107 bits (54), Expect = 1e-20
Identities = 102/118 (86%)
Strand = Plus / Minus
Query: 465 agtattttgaatatgctgaggaagctgtgtgggctgtggaagtcttaaaagaatctggaa 524
||||||||||| ||| ||| || ||||||||||| || |||| ||| |||| |||||| |
Sbjct: 89416744 agtattttgaacatgttgaagaggctgtgtgggcagttgaagccttgaaagcatctggga 89416685
Query: 525 aacccgtggcagccaccatgtgcataggcccagagggagacatgcatggcgtgacccc 582
| || |||||||| ||||||||||| ||||||||||||||| |||| |||||||||||
Sbjct: 89416684 agcctgtggcagcgaccatgtgcatcggcccagagggagacctgcacggcgtgacccc 89416627
Score = 99.6 bits (50), Expect = 3e-18
Identities = 50/50 (100%)
Strand = Plus / Minus
Query: 1 gcacagccgcggcgagatggcaccggctggaagtccccgcgccaagaagg 50
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89475621 gcacagccgcggcgagatggcaccggctggaagtccccgcgccaagaagg 89475572
Score = 67.9 bits (34), Expect = 1e-08
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 180 cagttcgtcagcttcacatggaattcttgagagcgggatcgaatgtcatgcagactttca 239
||||||| |||||||| ||| ||| | ||||| |||||||||||||||||||| ||||
Sbjct: 89419252 cagttcgccagcttcatcgggagttcctcagagccggatcgaatgtcatgcagaccttca 89419193
Query: 240 ccttttctgccaatgaggacaa 261
|||| | ||||| |||||||||
Sbjct: 89419192 ccttctatgccagtgaggacaa 89419171
Score = 58.0 bits (29), Expect = 1e-05
Identities = 71/85 (83%)
Strand = Plus / Minus
Query: 72 ctggggaggttgtggttggagatggcggctttctcctaactctggagaagaggggctacg 131
|||| ||||||||| ||||||| || || ||| || | ||||||||||||||||||| |
Sbjct: 89426190 ctggagaggttgtgattggagacggagggtttgtctttgctctggagaagaggggctatg 89426131
Query: 132 tgaaggcagggctctggacaccaga 156
|||| || |||| |||||| |||||
Sbjct: 89426130 tgaaagccgggccctggaccccaga 89426106
>gb|JH118568.1| Sus scrofa unplaced genomic scaffold ChrUScaf1048
Length = 105113
Score = 293 bits (148), Expect = 9e-77
Identities = 182/191 (95%), Gaps = 3/191 (1%)
Strand = Plus / Plus
Query: 799 actggagcccagagttgcaaccagatgggacattcaaaaatatgccagagaagcctacaa 858
|||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 40258 actggagcccagagttgcaaccagatgggatattcaaaaatacgccagagaggcctacaa 40317
Query: 859 cctggggatcaggtacataggagggtgctgtggatttgagccctaccacatcagggccat 918
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 40318 cctgggggtcaggtacataggcgggtgctgtggatttgagccctaccacatcagggccat 40377
Query: 919 tgcagaggagctggccccagaaaggggatttt--cctccagcttcaaag-aacatggcag 975
|||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||
Sbjct: 40378 tgcagaggagctggccccagaaaggggatttttgcctccagcttcagagaaacatggcag 40437
Query: 976 ctggggaagtg 986
|||||||||||
Sbjct: 40438 ctggggaagtg 40448
Score = 107 bits (54), Expect = 1e-20
Identities = 102/118 (86%)
Strand = Plus / Plus
Query: 465 agtattttgaatatgctgaggaagctgtgtgggctgtggaagtcttaaaagaatctggaa 524
||||||||||| ||| ||| || ||||||||||| || |||| ||| |||| |||||| |
Sbjct: 34747 agtattttgaacatgttgaagaggctgtgtgggcagttgaagccttgaaagcatctggga 34806
Query: 525 aacccgtggcagccaccatgtgcataggcccagagggagacatgcatggcgtgacccc 582
| || |||||||| ||||||||||| ||||||||||||||| |||| |||||||||||
Sbjct: 34807 agcctgtggcagcgaccatgtgcatcggcccagagggagacctgcacggcgtgacccc 34864
Score = 67.9 bits (34), Expect = 1e-08
Identities = 70/82 (85%)
Strand = Plus / Plus
Query: 180 cagttcgtcagcttcacatggaattcttgagagcgggatcgaatgtcatgcagactttca 239
||||||| |||||||| ||| ||| | ||||| |||||||||||||||||||| ||||
Sbjct: 32316 cagttcgccagcttcatcgggagttcctcagagccggatcgaatgtcatgcagaccttca 32375
Query: 240 ccttttctgccaatgaggacaa 261
|||| | ||||| |||||||||
Sbjct: 32376 ccttctatgccagtgaggacaa 32397
Score = 58.0 bits (29), Expect = 1e-05
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 72 ctggggaggttgtggttggagatggcggctttctcctaactctggagaagaggggctacg 131
|||| ||||||||| ||||||| || || ||| || | ||||||||||||||||||| |
Sbjct: 28218 ctggagaggttgtgattggagacggagggtttgtctttgctctggagaagaggggctatg 28277
Query: 132 tgaaggcagggctctggacaccaga 156
|||| || |||| |||||| |||||
Sbjct: 28278 tgaaagccgggccctggaccccaga 28302
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,345,294
Number of extensions: 199
Number of successful extensions: 199
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 15
Length of query: 997
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 976
Effective length of database: 2,808,413,156
Effective search space: 2741011240256
Effective search space used: 2741011240256
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)