Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0047_E04
(954 letters)
Database: RefSeqBP
33,508 sequences; 16,112,626 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014950.1| inhibitor of DNA binding 3 [Bos taurus] 196 2e-50
Alignment gi|NP_001029403.1| inhibitor of DNA binding 2, dominant negativ... 78 1e-14
Alignment gi|XP_585780.2| PREDICTED: similar to DNA-binding protein inhib... 78 1e-14
>ref|NP_001014950.1| inhibitor of DNA binding 3 [Bos taurus]
Length = 119
Score = 196 bits (499), Expect = 2e-50
Identities = 101/119 (84%), Positives = 102/119 (85%)
Frame = +1
Query: 70 MKALSPVRGCYEAVCCLSERSLAIARGRGKGPAAEEPLSLLDDMNHCYSRLRELVPGVPR 249
MKALSPVRGCYEAVCCLSERSLAIARGRGK PAAEEPLSLLDDMNHCYSRLRELVPGVPR
Sbjct: 1 MKALSPVRGCYEAVCCLSERSLAIARGRGKSPAAEEPLSLLDDMNHCYSRLRELVPGVPR 60
Query: 250 GTQLSQVEILQRVIDYILDLQVVXXXXXXXXXXXXXXXIQTAELAPELVISNDQTTFCH 426
GTQLSQVEILQRVIDYILDLQVV IQTAELAPELVISNDQ +FCH
Sbjct: 61 GTQLSQVEILQRVIDYILDLQVVLAEPAPGPPDGPHLPIQTAELAPELVISNDQRSFCH 119
>ref|NP_001029403.1| inhibitor of DNA binding 2, dominant negative helix-loop-helix
protein [Bos taurus]
Length = 134
Score = 77.8 bits (190), Expect = 1e-14
Identities = 41/82 (50%), Positives = 58/82 (70%)
Frame = +1
Query: 70 MKALSPVRGCYEAVCCLSERSLAIARGRGKGPAAEEPLSLLDDMNHCYSRLRELVPGVPR 249
MKA SPVR + LS+ L I+R + ++P+SLL +MN CYS+L+ELVP +P+
Sbjct: 1 MKAFSPVRSVRKN--SLSDHGLGISRSK---TPVDDPMSLLYNMNDCYSKLKELVPSIPQ 55
Query: 250 GTQLSQVEILQRVIDYILDLQV 315
++S++EILQ VIDYILDLQ+
Sbjct: 56 NKKVSKMEILQHVIDYILDLQI 77
>ref|XP_585780.2| PREDICTED: similar to DNA-binding protein inhibitor ID-1 (Inhibitor
of DNA binding 1) [Bos taurus]
Length = 154
Score = 77.8 bits (190), Expect = 1e-14
Identities = 47/90 (52%), Positives = 62/90 (68%), Gaps = 8/90 (8%)
Frame = +1
Query: 70 MKALSPVRGCYEAVCCLSERSLAIARGRGKGPAA-------EEPLS-LLDDMNHCYSRLR 225
+KA G E V CLSE+S+AI+R G GP A E+P++ LL DMN CYSRL+
Sbjct: 18 LKAGKAAGGAGEVVRCLSEQSVAISRCAG-GPGARLPALLEEQPVNVLLYDMNGCYSRLK 76
Query: 226 ELVPGVPRGTQLSQVEILQRVIDYILDLQV 315
ELVP +P+ ++S+VEILQ VIDYI DL++
Sbjct: 77 ELVPTLPQNRKVSRVEILQHVIDYIWDLEL 106
Database: RefSeqBP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 16,112,626
Number of sequences in database: 33,508
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,197,586
Number of Sequences: 33508
Number of extensions: 997850
Number of successful extensions: 5034
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 3620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4950
length of database: 16,112,626
effective HSP length: 101
effective length of database: 12,728,318
effective search space used: 2749316688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0047_E04
(954 letters)
Database: RefSeqCP
33,732 sequences; 19,266,565 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003025.1| inhibitor of DNA binding 3 [Canis familiaris] 197 1e-50
Alignment gi|XP_852210.1| PREDICTED: similar to DNA-binding protein inhib... 73 4e-13
Alignment gi|XP_853301.1| PREDICTED: similar to inhibitor of DNA binding ... 71 2e-12
>ref|NP_001003025.1| inhibitor of DNA binding 3 [Canis familiaris]
Length = 119
Score = 197 bits (501), Expect = 1e-50
Identities = 101/119 (84%), Positives = 103/119 (86%)
Frame = +1
Query: 70 MKALSPVRGCYEAVCCLSERSLAIARGRGKGPAAEEPLSLLDDMNHCYSRLRELVPGVPR 249
MKALSPVRGCYEAVCCLSERSLAIARGRGKGPAAEEPLSLLDDMNHCYSRLRELVPGVPR
Sbjct: 1 MKALSPVRGCYEAVCCLSERSLAIARGRGKGPAAEEPLSLLDDMNHCYSRLRELVPGVPR 60
Query: 250 GTQLSQVEILQRVIDYILDLQVVXXXXXXXXXXXXXXXIQTAELAPELVISNDQTTFCH 426
GTQLSQVEILQRVIDYILDLQVV IQTAELAPELVISND+ +FCH
Sbjct: 61 GTQLSQVEILQRVIDYILDLQVVLAEPAPGPPDGPHLPIQTAELAPELVISNDKRSFCH 119
>ref|XP_852210.1| PREDICTED: similar to DNA-binding protein inhibitor ID-1 (Inhibitor
of DNA binding 1) [Canis familiaris]
Length = 203
Score = 73.2 bits (178), Expect = 4e-13
Identities = 45/90 (50%), Positives = 57/90 (63%), Gaps = 8/90 (8%)
Frame = +1
Query: 70 MKALSPVRGCYEAVCCLSERSLAIARGRGKGPAAEEPLSL--------LDDMNHCYSRLR 225
+KA G E V CLSE+S+AI+R G G A P L L DMN CYSRL+
Sbjct: 67 LKAGKTAGGAGEVVRCLSEQSVAISRCAG-GAGARLPALLDEQQVNVLLYDMNGCYSRLK 125
Query: 226 ELVPGVPRGTQLSQVEILQRVIDYILDLQV 315
ELVP +P+ ++S+VEILQ VIDYI DL++
Sbjct: 126 ELVPTLPQNRKVSRVEILQHVIDYIWDLEL 155
>ref|XP_853301.1| PREDICTED: similar to inhibitor of DNA binding 4 [Canis familiaris]
Length = 119
Score = 70.9 bits (172), Expect = 2e-12
Identities = 49/105 (46%), Positives = 61/105 (58%), Gaps = 23/105 (21%)
Frame = +1
Query: 70 MKALSPVR--------GCYE---AVCCLSER-----------SLAIARGRGKGPAAEEP- 180
MKA+SPVR GC A+ CL+E + A AR + AA+EP
Sbjct: 1 MKAVSPVRPSGRKAPSGCGGGELALRCLAEHGHSLGGSAAAAAAAAARCKAAEAAADEPA 60
Query: 181 LSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 315
L L DMN CYSRLR LVP +P ++S+VEI+Q VIDYILDLQ+
Sbjct: 61 LCLQCDMNDCYSRLRRLVPTIPPNKKVSKVEIMQHVIDYILDLQL 105
Database: RefSeqCP
Posted date: Aug 1, 2006 9:25 PM
Number of letters in database: 19,266,565
Number of sequences in database: 33,732
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,137,147
Number of Sequences: 33732
Number of extensions: 1173490
Number of successful extensions: 5979
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 4096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5903
length of database: 19,266,565
effective HSP length: 103
effective length of database: 15,792,169
effective search space used: 3379524166
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0047_E04
(954 letters)
Database: RefSeqHP
39,411 sequences; 17,774,539 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002158.2| inhibitor of DNA binding 3 [Homo sapiens] 197 1e-50
Alignment gi|NP_002157.2| inhibitor of DNA binding 2 [Homo sapiens] 79 4e-15
Alignment gi|NP_851998.1| inhibitor of DNA binding 1 isoform b [Homo sapi... 75 1e-13
Alignment gi|NP_002156.2| inhibitor of DNA binding 1 isoform a [Homo sapi... 75 1e-13
Alignment gi|NP_001537.1| inhibitor of DNA binding 4, dominant negative h... 71 1e-12
>ref|NP_002158.2| inhibitor of DNA binding 3 [Homo sapiens]
Length = 119
Score = 197 bits (501), Expect = 1e-50
Identities = 101/119 (84%), Positives = 103/119 (86%)
Frame = +1
Query: 70 MKALSPVRGCYEAVCCLSERSLAIARGRGKGPAAEEPLSLLDDMNHCYSRLRELVPGVPR 249
MKALSPVRGCYEAVCCLSERSLAIARGRGKGPAAEEPLSLLDDMNHCYSRLRELVPGVPR
Sbjct: 1 MKALSPVRGCYEAVCCLSERSLAIARGRGKGPAAEEPLSLLDDMNHCYSRLRELVPGVPR 60
Query: 250 GTQLSQVEILQRVIDYILDLQVVXXXXXXXXXXXXXXXIQTAELAPELVISNDQTTFCH 426
GTQLSQVEILQRVIDYILDLQVV IQTAELAPELVISND+ +FCH
Sbjct: 61 GTQLSQVEILQRVIDYILDLQVVLAEPAPGPPDGPHLPIQTAELAPELVISNDKRSFCH 119
>ref|NP_002157.2| inhibitor of DNA binding 2 [Homo sapiens]
Length = 134
Score = 79.3 bits (194), Expect = 4e-15
Identities = 42/82 (51%), Positives = 59/82 (71%)
Frame = +1
Query: 70 MKALSPVRGCYEAVCCLSERSLAIARGRGKGPAAEEPLSLLDDMNHCYSRLRELVPGVPR 249
MKA SPVR + LS+ SL I+R + ++P+SLL +MN CYS+L+ELVP +P+
Sbjct: 1 MKAFSPVRSVRKN--SLSDHSLGISRSK---TPVDDPMSLLYNMNDCYSKLKELVPSIPQ 55
Query: 250 GTQLSQVEILQRVIDYILDLQV 315
++S++EILQ VIDYILDLQ+
Sbjct: 56 NKKVSKMEILQHVIDYILDLQI 77
>ref|NP_851998.1| inhibitor of DNA binding 1 isoform b [Homo sapiens]
Length = 149
Score = 74.7 bits (182), Expect = 1e-13
Identities = 46/90 (51%), Positives = 57/90 (63%), Gaps = 8/90 (8%)
Frame = +1
Query: 70 MKALSPVRGCYEAVCCLSERSLAIARGRGKGPAAEEPLSL--------LDDMNHCYSRLR 225
+KA G E V CLSE+S+AI+R G G A P L L DMN CYSRL+
Sbjct: 19 LKAGKTASGAGEVVRCLSEQSVAISRCAG-GAGARLPALLDEQQVNVLLYDMNGCYSRLK 77
Query: 226 ELVPGVPRGTQLSQVEILQRVIDYILDLQV 315
ELVP +P+ ++S+VEILQ VIDYI DLQ+
Sbjct: 78 ELVPTLPQNRKVSKVEILQHVIDYIRDLQL 107
>ref|NP_002156.2| inhibitor of DNA binding 1 isoform a [Homo sapiens]
Length = 155
Score = 74.7 bits (182), Expect = 1e-13
Identities = 46/90 (51%), Positives = 57/90 (63%), Gaps = 8/90 (8%)
Frame = +1
Query: 70 MKALSPVRGCYEAVCCLSERSLAIARGRGKGPAAEEPLSL--------LDDMNHCYSRLR 225
+KA G E V CLSE+S+AI+R G G A P L L DMN CYSRL+
Sbjct: 19 LKAGKTASGAGEVVRCLSEQSVAISRCAG-GAGARLPALLDEQQVNVLLYDMNGCYSRLK 77
Query: 226 ELVPGVPRGTQLSQVEILQRVIDYILDLQV 315
ELVP +P+ ++S+VEILQ VIDYI DLQ+
Sbjct: 78 ELVPTLPQNRKVSKVEILQHVIDYIRDLQL 107
>ref|NP_001537.1| inhibitor of DNA binding 4, dominant negative helix-loop-helix
protein [Homo sapiens]
Length = 161
Score = 71.2 bits (173), Expect = 1e-12
Identities = 50/106 (47%), Positives = 61/106 (57%), Gaps = 24/106 (22%)
Frame = +1
Query: 70 MKALSPVR--------GCYE---AVCCLSER------------SLAIARGRGKGPAAEEP 180
MKA+SPVR GC A+ CL+E + A AR + AA+EP
Sbjct: 1 MKAVSPVRPSGRKAPSGCGGGELALRCLAEHGHSLGGSAAAAAAAAAARCKAAEAAADEP 60
Query: 181 -LSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 315
L L DMN CYSRLR LVP +P ++S+VEILQ VIDYILDLQ+
Sbjct: 61 ALCLQCDMNDCYSRLRRLVPTIPPNKKVSKVEILQHVIDYILDLQL 106
Database: RefSeqHP
Posted date: Aug 2, 2006 12:57 AM
Number of letters in database: 17,774,539
Number of sequences in database: 39,411
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,041,705
Number of Sequences: 39411
Number of extensions: 1193576
Number of successful extensions: 7042
Number of sequences better than 1.0e-05: 5
Number of HSP's better than 0.0 without gapping: 4612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6916
length of database: 17,774,539
effective HSP length: 102
effective length of database: 13,754,617
effective search space used: 2957242655
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqSP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0047_E04
(954 letters)
Database: RefSeqSP
1040 sequences; 434,620 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033054.1| inhibitor of DNA binding 2 [Sus scrofa] 79 1e-16
>ref|NP_001033054.1| inhibitor of DNA binding 2 [Sus scrofa]
Length = 134
Score = 79.3 bits (194), Expect = 1e-16
Identities = 42/82 (51%), Positives = 59/82 (71%)
Frame = +1
Query: 70 MKALSPVRGCYEAVCCLSERSLAIARGRGKGPAAEEPLSLLDDMNHCYSRLRELVPGVPR 249
MKA SPVR + LS+ SL I+R + ++P+SLL +MN CYS+L+ELVP +P+
Sbjct: 1 MKAFSPVRSVRKN--SLSDHSLGISRSK---TPVDDPMSLLYNMNDCYSKLKELVPSIPQ 55
Query: 250 GTQLSQVEILQRVIDYILDLQV 315
++S++EILQ VIDYILDLQ+
Sbjct: 56 NKKVSKMEILQHVIDYILDLQI 77
Database: RefSeqSP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 434,620
Number of sequences in database: 1040
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 901,006
Number of Sequences: 1040
Number of extensions: 25021
Number of successful extensions: 128
Number of sequences better than 1.0e-05: 1
Number of HSP's better than 0.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 434,620
effective HSP length: 77
effective length of database: 354,540
effective search space used: 85089600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVRM1_0047_E04
(954 letters)
Database: RefSeqMP
45,328 sequences; 21,768,885 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032347.1| inhibitor of DNA binding 3 [Mus musculus] 188 6e-48
Alignment gi|NP_034626.1| inhibitor of DNA binding 2 [Mus musculus] 78 1e-14
Alignment gi|NP_112443.1| inhibitor of DNA binding 4 [Mus musculus] 71 1e-12
Alignment gi|NP_034625.1| inhibitor of DNA binding 1 [Mus musculus] 68 1e-11
>ref|NP_032347.1| inhibitor of DNA binding 3 [Mus musculus]
Length = 119
Score = 188 bits (478), Expect = 6e-48
Identities = 96/119 (80%), Positives = 99/119 (83%)
Frame = +1
Query: 70 MKALSPVRGCYEAVCCLSERSLAIARGRGKGPAAEEPLSLLDDMNHCYSRLRELVPGVPR 249
MKALSPVRGCYEAVCCLSERSLAIARGRGK P+ EEPLSLLDDMNHCYSRLRELVPGVPR
Sbjct: 1 MKALSPVRGCYEAVCCLSERSLAIARGRGKSPSTEEPLSLLDDMNHCYSRLRELVPGVPR 60
Query: 250 GTQLSQVEILQRVIDYILDLQVVXXXXXXXXXXXXXXXIQTAELAPELVISNDQTTFCH 426
GTQLSQVEILQRVIDYILDLQVV IQTAEL PELVIS D+ +FCH
Sbjct: 61 GTQLSQVEILQRVIDYILDLQVVLAEPAPGPPDGPHLPIQTAELTPELVISKDKRSFCH 119
>ref|NP_034626.1| inhibitor of DNA binding 2 [Mus musculus]
Length = 134
Score = 78.2 bits (191), Expect = 1e-14
Identities = 41/82 (50%), Positives = 59/82 (71%)
Frame = +1
Query: 70 MKALSPVRGCYEAVCCLSERSLAIARGRGKGPAAEEPLSLLDDMNHCYSRLRELVPGVPR 249
MKA SPVR + LS+ SL I+R + ++P+SLL +MN CYS+L+ELVP +P+
Sbjct: 1 MKAFSPVRSVRKN--SLSDHSLGISRSK---TPVDDPMSLLYNMNDCYSKLKELVPSIPQ 55
Query: 250 GTQLSQVEILQRVIDYILDLQV 315
+++++EILQ VIDYILDLQ+
Sbjct: 56 NKKVTKMEILQHVIDYILDLQI 77
>ref|NP_112443.1| inhibitor of DNA binding 4 [Mus musculus]
Length = 161
Score = 71.2 bits (173), Expect = 1e-12
Identities = 50/106 (47%), Positives = 61/106 (57%), Gaps = 24/106 (22%)
Frame = +1
Query: 70 MKALSPVR--------GCYE---AVCCLSER------------SLAIARGRGKGPAAEEP 180
MKA+SPVR GC A+ CL+E + A AR + AA+EP
Sbjct: 1 MKAVSPVRPSGRKAPSGCGGGELALRCLAEHGHSLGGSAAAAAAAAAARCKAAEAAADEP 60
Query: 181 -LSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 315
L L DMN CYSRLR LVP +P ++S+VEILQ VIDYILDLQ+
Sbjct: 61 ALCLQCDMNDCYSRLRRLVPTIPPNKKVSKVEILQHVIDYILDLQL 106
>ref|NP_034625.1| inhibitor of DNA binding 1 [Mus musculus]
Length = 148
Score = 68.2 bits (165), Expect = 1e-11
Identities = 42/84 (50%), Positives = 55/84 (65%), Gaps = 4/84 (4%)
Frame = +1
Query: 76 ALSPVRGCYEAVCCLSERSLAIARGRGKGPAA----EEPLSLLDDMNHCYSRLRELVPGV 243
+L R E V LSE+S+AI+R G A ++ LL DMN CYSRL+ELVP +
Sbjct: 17 SLKAGRTAGEVVLGLSEQSVAISRCAGTRLPALLDEQQVNVLLYDMNGCYSRLKELVPTL 76
Query: 244 PRGTQLSQVEILQRVIDYILDLQV 315
P+ ++S+VEILQ VIDYI DLQ+
Sbjct: 77 PQNRKVSKVEILQHVIDYIRDLQL 100
Database: RefSeqMP
Posted date: Aug 2, 2006 12:58 AM
Number of letters in database: 21,768,885
Number of sequences in database: 45,328
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,368,041
Number of Sequences: 45328
Number of extensions: 1290156
Number of successful extensions: 6349
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 4583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6267
length of database: 21,768,885
effective HSP length: 103
effective length of database: 17,100,101
effective search space used: 3659421614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)