Animal-Genome cDNA Clone 20030531/20030531C-0/20030531C-003380


Query

>20030531C-003380 (20030531C-003380) 20030531C-003380
ACTTCTGGAA GAGATAGGGA GGGAGAGAGT GGCGACCGAC TTCCTGAATC
GCTGGGCAAC TCAGGAAGAG AGCTCAACCC CTGCTGCGCC AAGATGTCTG
GAGGATCAGC CAGAAGCCTG GGGAAGGGAA GTGCGCCCCC GGGGCCGGTC
CCCGAGGGCC TGATCCGTGT CTACAGCATG AGATTCTGTC CTTTCGCCCA
GAGGACTCTC CTGGTCCTGA ATGCCAAGGG AATCCGGTGA GAACCAAGGC
AGCAGCAGCT CTCCTCTCAG GCCAAGAACC AGCTGCTGCA AGCGGCGCGA
GTGGGAATCT CAGACAGGGT CCCCATAGCT TCTTTTACTG CAAAATAAAT
TATTCTCAAA CTTTTGGGAG GACATGTAAA GCTATGAACC TAATCCTTTC
CTCCGAGGGC AGTGGGAATG CTACAGACTC CACCAGTCTA GAACACCGCA
TTTAGATTAA CAATTTAATG GATCCAGAAA GCTGAAGCTT CAGTAAAGTT
AGTGATAGGC TGGGATCACT CGACTGGTAT TCAGGTGAGG CTCTTTTAGC
TCTGGTAGAT TCCCGATTCC TGGTGCACTG TCTTTTCCCT TTCACGCCAT
TTCTCCATTC TTATCTGGCT TATTTGATAT CCTTTCCTGT TATTCTGAAG
ATAAGATCCC TTCCTGAATT GTTGATTCAC CCCAGTCCAG AGTCCAGACC
TTGACCTTCC TCCTGGCAGA GTGCTGACAT AACTGTACTT TGTATATTTC
TAAAGGTTGG ATTGTTTGCT GAGTCACAGG AAGTGTCTAT GCCTAAAAAT
TCAGACTTTG GGGAAGAGTC ATTGAAAACC TGTATGGTGA TGACAAATGG
GTTATCTGCA GGAAATATGC AAGTCACTTC AGTTTTCTCT GTTAAATATC
CATTGTCACT ACCTCTCTTC CAATGACTTT TTGGAATCTG T

Search to UniGene2 database

Query= 20030531C-003380 (20030531C-003380) 20030531C-003380
         (941 letters)

Database: UniGene(Bt+Hs+Ssc+Mm)
           230,285 sequences; 241,976,893 total letters

Searching..................................................done

                                                                               Score     E
            Sequences producing significant alignments:                        (bits)  Value

Alignment   gnl|UG|Ssc#S6090306 Sus scrofa glutathione S-transferase omega ...   428  e-118
Alignment   gnl|UG|Mm#S8041684 Mus musculus glutathione S-transferase omega...   137  1e-30
Alignment   gnl|UG|Hs#S1729015 Homo sapiens glutathione-S-transferase like;...   107  9e-22
Alignment   gnl|UG|Hs#S4417597 AGENCOURT_7575469 NIH_MGC_72 Homo sapiens cD...   100  2e-19
Alignment   gnl|UG|Hs#S480000 zm68e09.s1 Stratagene neuroepithelium (#93723...   100  2e-19
Alignment   gnl|UG|Mm#S9707856 Mus musculus RIKEN cDNA 1700020F09 gene (170...    50  2e-04
Alignment   gnl|UG|Hs#S4806152 Homo sapiens, clone IMAGE:4794876, mRNA /gb=...    38  0.71
Alignment   gnl|UG|Mm#S14813166 Mus musculus RIKEN cDNA D030012E24 gene (D0...    38  0.71
Alignment   gnl|UG|Mm#S10828566 Mus musculus RIKEN cDNA 9930023K05 gene (99...    38  0.71
Alignment   gnl|UG|Hs#S2932387 UI-H-BW1-aoa-e-01-0-UI.s1 NCI_CGAP_Sub7 Homo...    36  2.8


>gnl|UG|Ssc#S6090306 Sus scrofa glutathione S-transferase omega
           mRNA, complete cds /cds=(76,801) /gb=AF188838
           /gi=12249196 /ug=Ssc.183 /len=893
          Length = 893

 Score =  428 bits (216), Expect = e-118
 Identities = 216/216 (100%)
 Strand = Plus / Plus


Query: 22  ggagagagtggcgaccgacttcctgaatcgctgggcaactcaggaagagagctcaacccc 81
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4   ggagagagtggcgaccgacttcctgaatcgctgggcaactcaggaagagagctcaacccc 63


Query: 82  tgctgcgccaagatgtctggaggatcagccagaagcctggggaagggaagtgcgcccccg 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  tgctgcgccaagatgtctggaggatcagccagaagcctggggaagggaagtgcgcccccg 123


Query: 142 gggccggtccccgagggcctgatccgtgtctacagcatgagattctgtcctttcgcccag 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 gggccggtccccgagggcctgatccgtgtctacagcatgagattctgtcctttcgcccag 183


Query: 202 aggactctcctggtcctgaatgccaagggaatccgg 237
           ||||||||||||||||||||||||||||||||||||
Sbjct: 184 aggactctcctggtcctgaatgccaagggaatccgg 219



>gnl|UG|Mm#S8041684 Mus musculus glutathione S-transferase omega 1
           (Gsto1), mRNA /cds=(101,823) /gb=NM_010362 /gi=6754089
           /ug=Mm.282 /len=1172
          Length = 1172

 Score =  137 bits (69), Expect = 1e-30
 Identities = 126/145 (86%)
 Strand = Plus / Plus


Query: 93  gatgtctggaggatcagccagaagcctggggaagggaagtgcgcccccggggccggtccc 152
           |||||| |||| |||  |||| ||||||||||||||||| |||||||| || ||||||||
Sbjct: 100 gatgtcgggagaatcctccaggagcctggggaagggaagcgcgccccccggcccggtccc 159


Query: 153 cgagggcctgatccgtgtctacagcatgagattctgtcctttcgcccagaggactctcct 212
            ||||||| |||||| |||||||||||||| ||||| || ||||| |||||||| ||  |
Sbjct: 160 ggagggccagatccgcgtctacagcatgaggttctgccccttcgctcagaggacgctgat 219


Query: 213 ggtcctgaatgccaagggaatccgg 237
           ||||||||| |||||||||||||||
Sbjct: 220 ggtcctgaaggccaagggaatccgg 244



>gnl|UG|Hs#S1729015 Homo sapiens glutathione-S-transferase like;
           glutathione transferase omega (GSTTLp28), mRNA
           /cds=(10,735) /gb=NM_004832 /gi=4758483 /ug=Hs.11465
           /len=793
          Length = 793

 Score =  107 bits (54), Expect = 9e-22
 Identities = 126/150 (84%)
 Strand = Plus / Plus


Query: 85  tgcgccaagatgtctggaggatcagccagaagcctggggaagggaagtgcgcccccgggg 144
           ||||||| |||||| || |  |||||||| ||| ||||||||||||| ||||||||||||
Sbjct: 1   tgcgccacgatgtccggggagtcagccaggagcttggggaagggaagcgcgcccccgggg 60


Query: 145 ccggtccccgagggcctgatccgtgtctacagcatgagattctgtcctttcgcccagagg 204
           |||||||| ||||||  ||||||  ||||||||||||| ||||| || || ||  |||||
Sbjct: 61  ccggtcccggagggctcgatccgcatctacagcatgaggttctgcccgtttgctgagagg 120


Query: 205 actctcctggtcctgaatgccaagggaatc 234
           || |  || |||||||| ||||||||||||
Sbjct: 121 acgcgtctagtcctgaaggccaagggaatc 150



>gnl|UG|Hs#S4417597 AGENCOURT_7575469 NIH_MGC_72 Homo sapiens cDNA
           clone IMAGE:6049339 5', mRNA sequence
           /clone=IMAGE:6049339 /clone_end=5' /gb=BQ224776
           /gi=20406176 /ug=Hs.418464 /len=1249
          Length = 1249

 Score = 99.6 bits (50), Expect = 2e-19
 Identities = 107/126 (84%)
 Strand = Plus / Plus


Query: 109 gccagaagcctggggaagggaagtgcgcccccggggccggtccccgagggcctgatccgt 168
           ||||| ||| ||||||||||||| |||||||||||||||||||| ||||||  ||||||
Sbjct: 12  gccaggagcttggggaagggaagcgcgcccccggggccggtcccggagggctcgatccgc 71


Query: 169 gtctacagcatgagattctgtcctttcgcccagaggactctcctggtcctgaatgccaag 228
            ||||||||||||| ||||| || || ||  ||||||| |  || |||||||| ||||||
Sbjct: 72  atctacagcatgaggttctgcccgtttgctgagaggacgcgtctagtcctgaaggccaag 131


Query: 229 ggaatc 234
           ||||||
Sbjct: 132 ggaatc 137



>gnl|UG|Hs#S480000 zm68e09.s1 Stratagene neuroepithelium (#937231)
           Homo sapiens cDNA clone IMAGE:530824 3' similar to
           WP:C02D5.3 CE00035 ;, mRNA sequence /clone=IMAGE:530824
           /clone_end=3' /gb=AA070426 /gi=1577787 /ug=Hs.401473
           /len=258
          Length = 258

 Score = 99.6 bits (50), Expect = 2e-19
 Identities = 111/129 (86%), Gaps = 3/129 (2%)
 Strand = Plus / Plus


Query: 110 ccagaagcctggggaagggaagtgcgcccccggggccggtccccgagggcctg-atccgt 168
           |||| ||||||||||||||||| |||||||| || |||||||| ||  ||| | |||||
Sbjct: 6   ccaggagcctggggaagggaagcgcgccccccggcccggtcccgga--gccagaatccgc 63


Query: 169 gtctacagcatgagattctgtcctttcgcccagaggactctcctggtcctgaatgccaag 228
           |||||||||||||| ||||| || ||||| |||||||| ||  |||||||||| ||||||
Sbjct: 64  gtctacagcatgaggttctgccccttcgctcagaggacgctgatggtcctgaaggccaag 123


Query: 229 ggaatccgg 237
           |||||||||
Sbjct: 124 ggaatccgg 132



>gnl|UG|Mm#S9707856 Mus musculus RIKEN cDNA 1700020F09 gene
           (1700020F09Rik), mRNA /cds=(435,1181) /gb=NM_026619
           /gi=21311856 /ug=Mm.63791 /len=1297
          Length = 1297

 Score = 50.1 bits (25), Expect = 2e-04
 Identities = 46/53 (86%)
 Strand = Plus / Plus


Query: 136 cccccggggccggtccccgagggcctgatccgtgtctacagcatgagattctg 188
           ||||| ||||||||||| |||||  |||||||  ||||||||||||| |||||
Sbjct: 477 cccccagggccggtccctgagggtgtgatccgaatctacagcatgaggttctg 529



>gnl|UG|Hs#S4806152 Homo sapiens, clone IMAGE:4794876, mRNA
           /gb=BC037528 /gi=22789246 /ug=Hs.356239 /len=2452
          Length = 2452

 Score = 38.2 bits (19), Expect = 0.71
 Identities = 19/19 (100%)
 Strand = Plus / Plus


Query: 364 ttgggaggacatgtaaagc 382
           |||||||||||||||||||
Sbjct: 891 ttgggaggacatgtaaagc 909



>gnl|UG|Mm#S14813166 Mus musculus RIKEN cDNA D030012E24 gene
           (D030012E24Rik), mRNA /cds=(1,495) /gb=NM_176902
           /gi=28892682 /ug=Mm.258466 /len=495
          Length = 495

 Score = 38.2 bits (19), Expect = 0.71
 Identities = 19/19 (100%)
 Strand = Plus / Plus


Query: 280 cagctgctgcaagcggcgc 298
           |||||||||||||||||||
Sbjct: 88  cagctgctgcaagcggcgc 106



>gnl|UG|Mm#S10828566 Mus musculus RIKEN cDNA 9930023K05 gene
            (9930023K05Rik), mRNA /cds=(78,1502) /gb=NM_172641
            /gi=27369923 /ug=Mm.156742 /len=2379
          Length = 2379

 Score = 38.2 bits (19), Expect = 0.71
 Identities = 22/23 (95%)
 Strand = Plus / Minus


Query: 766  ttgctgagtcacaggaagtgtct 788
            |||||||| ||||||||||||||
Sbjct: 1850 ttgctgagccacaggaagtgtct 1828



>gnl|UG|Hs#S2932387 UI-H-BW1-aoa-e-01-0-UI.s1 NCI_CGAP_Sub7 Homo
           sapiens cDNA clone IMAGE:3084001 3', mRNA sequence
           /clone=IMAGE:3084001 /clone_end=3' /gb=BF515924
           /gi=11601103 /ug=Hs.440259 /len=1127
          Length = 1127

 Score = 36.2 bits (18), Expect = 2.8
 Identities = 21/22 (95%)
 Strand = Plus / Minus


Query: 335 ttactgcaaaataaattattct 356
           |||||| |||||||||||||||
Sbjct: 286 ttactgaaaaataaattattct 265


  Database: UniGene(Bt+Hs+Ssc+Mm)
    Posted date:  May 6, 2003  5:18 PM
  Number of letters in database: 241,976,893
  Number of sequences in database:  230,285

Lambda     K      H
    1.37    0.711     1.31

Gapped
Lambda     K      H
    1.37    0.711     1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 163798
Number of Sequences: 230285
Number of extensions: 163798
Number of successful extensions: 12337
Number of sequences better than 10.0: 18
length of query: 941
length of database: 241,976,893
effective HSP length: 19
effective length of query: 922
effective length of database: 237,601,478
effective search space: 219068562716
effective search space used: 219068562716
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)