Search to UniGene2 database
Query= 20030531C-003380 (20030531C-003380) 20030531C-003380
(941 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
230,285 sequences; 241,976,893 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Ssc#S6090306 Sus scrofa glutathione S-transferase omega ... 428 e-118
Alignment gnl|UG|Mm#S8041684 Mus musculus glutathione S-transferase omega... 137 1e-30
Alignment gnl|UG|Hs#S1729015 Homo sapiens glutathione-S-transferase like;... 107 9e-22
Alignment gnl|UG|Hs#S4417597 AGENCOURT_7575469 NIH_MGC_72 Homo sapiens cD... 100 2e-19
Alignment gnl|UG|Hs#S480000 zm68e09.s1 Stratagene neuroepithelium (#93723... 100 2e-19
Alignment gnl|UG|Mm#S9707856 Mus musculus RIKEN cDNA 1700020F09 gene (170... 50 2e-04
Alignment gnl|UG|Hs#S4806152 Homo sapiens, clone IMAGE:4794876, mRNA /gb=... 38 0.71
Alignment gnl|UG|Mm#S14813166 Mus musculus RIKEN cDNA D030012E24 gene (D0... 38 0.71
Alignment gnl|UG|Mm#S10828566 Mus musculus RIKEN cDNA 9930023K05 gene (99... 38 0.71
Alignment gnl|UG|Hs#S2932387 UI-H-BW1-aoa-e-01-0-UI.s1 NCI_CGAP_Sub7 Homo... 36 2.8
>gnl|UG|Ssc#S6090306 Sus scrofa glutathione S-transferase omega
mRNA, complete cds /cds=(76,801) /gb=AF188838
/gi=12249196 /ug=Ssc.183 /len=893
Length = 893
Score = 428 bits (216), Expect = e-118
Identities = 216/216 (100%)
Strand = Plus / Plus
Query: 22 ggagagagtggcgaccgacttcctgaatcgctgggcaactcaggaagagagctcaacccc 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 ggagagagtggcgaccgacttcctgaatcgctgggcaactcaggaagagagctcaacccc 63
Query: 82 tgctgcgccaagatgtctggaggatcagccagaagcctggggaagggaagtgcgcccccg 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 tgctgcgccaagatgtctggaggatcagccagaagcctggggaagggaagtgcgcccccg 123
Query: 142 gggccggtccccgagggcctgatccgtgtctacagcatgagattctgtcctttcgcccag 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 gggccggtccccgagggcctgatccgtgtctacagcatgagattctgtcctttcgcccag 183
Query: 202 aggactctcctggtcctgaatgccaagggaatccgg 237
||||||||||||||||||||||||||||||||||||
Sbjct: 184 aggactctcctggtcctgaatgccaagggaatccgg 219
>gnl|UG|Mm#S8041684 Mus musculus glutathione S-transferase omega 1
(Gsto1), mRNA /cds=(101,823) /gb=NM_010362 /gi=6754089
/ug=Mm.282 /len=1172
Length = 1172
Score = 137 bits (69), Expect = 1e-30
Identities = 126/145 (86%)
Strand = Plus / Plus
Query: 93 gatgtctggaggatcagccagaagcctggggaagggaagtgcgcccccggggccggtccc 152
|||||| |||| ||| |||| ||||||||||||||||| |||||||| || ||||||||
Sbjct: 100 gatgtcgggagaatcctccaggagcctggggaagggaagcgcgccccccggcccggtccc 159
Query: 153 cgagggcctgatccgtgtctacagcatgagattctgtcctttcgcccagaggactctcct 212
||||||| |||||| |||||||||||||| ||||| || ||||| |||||||| || |
Sbjct: 160 ggagggccagatccgcgtctacagcatgaggttctgccccttcgctcagaggacgctgat 219
Query: 213 ggtcctgaatgccaagggaatccgg 237
||||||||| |||||||||||||||
Sbjct: 220 ggtcctgaaggccaagggaatccgg 244
>gnl|UG|Hs#S1729015 Homo sapiens glutathione-S-transferase like;
glutathione transferase omega (GSTTLp28), mRNA
/cds=(10,735) /gb=NM_004832 /gi=4758483 /ug=Hs.11465
/len=793
Length = 793
Score = 107 bits (54), Expect = 9e-22
Identities = 126/150 (84%)
Strand = Plus / Plus
Query: 85 tgcgccaagatgtctggaggatcagccagaagcctggggaagggaagtgcgcccccgggg 144
||||||| |||||| || | |||||||| ||| ||||||||||||| ||||||||||||
Sbjct: 1 tgcgccacgatgtccggggagtcagccaggagcttggggaagggaagcgcgcccccgggg 60
Query: 145 ccggtccccgagggcctgatccgtgtctacagcatgagattctgtcctttcgcccagagg 204
|||||||| |||||| |||||| ||||||||||||| ||||| || || || |||||
Sbjct: 61 ccggtcccggagggctcgatccgcatctacagcatgaggttctgcccgtttgctgagagg 120
Query: 205 actctcctggtcctgaatgccaagggaatc 234
|| | || |||||||| ||||||||||||
Sbjct: 121 acgcgtctagtcctgaaggccaagggaatc 150
>gnl|UG|Hs#S4417597 AGENCOURT_7575469 NIH_MGC_72 Homo sapiens cDNA
clone IMAGE:6049339 5', mRNA sequence
/clone=IMAGE:6049339 /clone_end=5' /gb=BQ224776
/gi=20406176 /ug=Hs.418464 /len=1249
Length = 1249
Score = 99.6 bits (50), Expect = 2e-19
Identities = 107/126 (84%)
Strand = Plus / Plus
Query: 109 gccagaagcctggggaagggaagtgcgcccccggggccggtccccgagggcctgatccgt 168
||||| ||| ||||||||||||| |||||||||||||||||||| |||||| ||||||
Sbjct: 12 gccaggagcttggggaagggaagcgcgcccccggggccggtcccggagggctcgatccgc 71
Query: 169 gtctacagcatgagattctgtcctttcgcccagaggactctcctggtcctgaatgccaag 228
||||||||||||| ||||| || || || ||||||| | || |||||||| ||||||
Sbjct: 72 atctacagcatgaggttctgcccgtttgctgagaggacgcgtctagtcctgaaggccaag 131
Query: 229 ggaatc 234
||||||
Sbjct: 132 ggaatc 137
>gnl|UG|Hs#S480000 zm68e09.s1 Stratagene neuroepithelium (#937231)
Homo sapiens cDNA clone IMAGE:530824 3' similar to
WP:C02D5.3 CE00035 ;, mRNA sequence /clone=IMAGE:530824
/clone_end=3' /gb=AA070426 /gi=1577787 /ug=Hs.401473
/len=258
Length = 258
Score = 99.6 bits (50), Expect = 2e-19
Identities = 111/129 (86%), Gaps = 3/129 (2%)
Strand = Plus / Plus
Query: 110 ccagaagcctggggaagggaagtgcgcccccggggccggtccccgagggcctg-atccgt 168
|||| ||||||||||||||||| |||||||| || |||||||| || ||| | |||||
Sbjct: 6 ccaggagcctggggaagggaagcgcgccccccggcccggtcccgga--gccagaatccgc 63
Query: 169 gtctacagcatgagattctgtcctttcgcccagaggactctcctggtcctgaatgccaag 228
|||||||||||||| ||||| || ||||| |||||||| || |||||||||| ||||||
Sbjct: 64 gtctacagcatgaggttctgccccttcgctcagaggacgctgatggtcctgaaggccaag 123
Query: 229 ggaatccgg 237
|||||||||
Sbjct: 124 ggaatccgg 132
>gnl|UG|Mm#S9707856 Mus musculus RIKEN cDNA 1700020F09 gene
(1700020F09Rik), mRNA /cds=(435,1181) /gb=NM_026619
/gi=21311856 /ug=Mm.63791 /len=1297
Length = 1297
Score = 50.1 bits (25), Expect = 2e-04
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 136 cccccggggccggtccccgagggcctgatccgtgtctacagcatgagattctg 188
||||| ||||||||||| ||||| ||||||| ||||||||||||| |||||
Sbjct: 477 cccccagggccggtccctgagggtgtgatccgaatctacagcatgaggttctg 529
>gnl|UG|Hs#S4806152 Homo sapiens, clone IMAGE:4794876, mRNA
/gb=BC037528 /gi=22789246 /ug=Hs.356239 /len=2452
Length = 2452
Score = 38.2 bits (19), Expect = 0.71
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 364 ttgggaggacatgtaaagc 382
|||||||||||||||||||
Sbjct: 891 ttgggaggacatgtaaagc 909
>gnl|UG|Mm#S14813166 Mus musculus RIKEN cDNA D030012E24 gene
(D030012E24Rik), mRNA /cds=(1,495) /gb=NM_176902
/gi=28892682 /ug=Mm.258466 /len=495
Length = 495
Score = 38.2 bits (19), Expect = 0.71
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 280 cagctgctgcaagcggcgc 298
|||||||||||||||||||
Sbjct: 88 cagctgctgcaagcggcgc 106
>gnl|UG|Mm#S10828566 Mus musculus RIKEN cDNA 9930023K05 gene
(9930023K05Rik), mRNA /cds=(78,1502) /gb=NM_172641
/gi=27369923 /ug=Mm.156742 /len=2379
Length = 2379
Score = 38.2 bits (19), Expect = 0.71
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 766 ttgctgagtcacaggaagtgtct 788
|||||||| ||||||||||||||
Sbjct: 1850 ttgctgagccacaggaagtgtct 1828
>gnl|UG|Hs#S2932387 UI-H-BW1-aoa-e-01-0-UI.s1 NCI_CGAP_Sub7 Homo
sapiens cDNA clone IMAGE:3084001 3', mRNA sequence
/clone=IMAGE:3084001 /clone_end=3' /gb=BF515924
/gi=11601103 /ug=Hs.440259 /len=1127
Length = 1127
Score = 36.2 bits (18), Expect = 2.8
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 335 ttactgcaaaataaattattct 356
|||||| |||||||||||||||
Sbjct: 286 ttactgaaaaataaattattct 265
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: May 6, 2003 5:18 PM
Number of letters in database: 241,976,893
Number of sequences in database: 230,285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 163798
Number of Sequences: 230285
Number of extensions: 163798
Number of successful extensions: 12337
Number of sequences better than 10.0: 18
length of query: 941
length of database: 241,976,893
effective HSP length: 19
effective length of query: 922
effective length of database: 237,601,478
effective search space: 219068562716
effective search space used: 219068562716
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)