Description

This page serves as the viewer for the assembled EST sequences and finished cDNA sequences through Gene Ontology (GO) terms. We attached links to GO terms according to BLAST similarity search of the clones and EST assemblies with human, mouse, and cattle translated RefSeq sequences. On this page, you can select GO terms in the tree view, and obtain lists of clones or assemblies with marked match to the RefSeq sequences related to the selected GO term by clicking on "Full-length cDNA clone" or "EST assembly" button.

"Download FASTA" button

You can download the entire sequences in the list in multi-FastA format.

"Clone/Assembly"

This is a link to the list of the clones and assemblies that matched to the specified gene.

"P"

This is an external link to the protein sequence of the specified gene in NCBI.

Symbol

This is an external link to the "Gene" information of the specified gene in NCBI.

Score

This is a link to the raw data from the BLAST similarity search.

FL (full-length) cDNA

This search returns the clones and assemblies estimated to include the entire CDS region of the corresponding UniGene cluster or RefSeq sequence. In the "Clone Information" or "Assembly Information" page, presumption of a full-length CDS is omitted if the BLAST score is less than 50. For the finished cDNA sequences, we roughly estimated the cDNA clones as encoding full-length CDSs if the length from the head to end of all of the marked match (BLAST score > 50) in the ORF of the cDNA clones were within the limit between 67% and 150% of the length of CDS of the matched reference gene. For the EST assemblies, we estimated the assemblies as encoding full-length CDSs if the length upstream of marked match (BLAST score > 50) in the assemblies were longer than the length between the start base of CDSs and the matched region of the corresponding genes.

FL (full-length) cDNA

We roughly estimated the cDNA clones as encoding full-length CDSs if the length from the head to tail of all of the matches (BLAST score > 50) in the ORF of the cDNA clones were within the limit between 67% and 150% of the length of CDS of the matched reference gene. For the EST assemblies, we estimated the assemblies as encoding full-length CDSs if the length upstream of the matches (BLAST score > 50) in the assemblies were longer than the length between the start base of the CDSs and the matched region of the corresponding genes.