References

To cite this database, please use this literature.

Uenishi, H., Eguchi-Ogawa, T. Shinkai, H, Okumura, N., Suzuki, K., Toki, D., Hamasima, N. and Awata, T. (2007) PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Nucleic Acids Res., 35, D650-3.

Uenishi, H., Eguchi, T., Suzuki, K., Sawazaki, T., Toki, D., Shinkai, H., Okumura, N., Hamasima, N., and Awata, T. (2004) PEDE (Pig EST Data Explorer): Construction of a database for ESTs derived from porcine full-length cDNA libraries. Nucleic Acids Res., 32, D484-8.

Literature related to this database

1. Wada, Y. and Yasue, H. (1996) Development of an animal genome database and its search system. Comput. Appl. Biosci., 12, 231-235.

2. Mikawa, S., Akita, T., Hisamatsu, N., Inage, Y., Ito, Y., Kobayashi, E., Kusumoto, H., Matsumoto, T., Mikami, H., Minezawa, M., Miyake, M., Shimanuki, S., Sugiyama, C., Uchida, Y., Wada, Y., Yanai, S. and Yasue, H. (1999) A linkage map of 243 DNA markers in an intercross of Goettingen miniature and Meishan pigs. Anim. Genet., 30, 407-417.

3. Wada, Y., Akita, T., Awata, T., Furukawa, T., Sugai, N., Inage, Y., Ishii, K., Ito, Y., Kobayashi, E., Kusumoto, H., Matsumoto, T., Mikawa, S., Miyake, M., Murase, A., Shimanuki, S., Sugiyama, T., Uchida, Y., Yanai, S. and Yasue, H. (2000) Quantitative trait loci (QTL) analysis in a Meishan x Goettingen cross population. Anim. Genet., 31, 376-384.

4. Suzuki, K., Asakawa, S., Iida, M., Shimanuki, S., Fujishima, N., Hiraiwa, H., Murakami, Y., Shimizu, N. and Yasue, H. (2000) Construction and evaluation of a porcine bacterial artificial chromosome library. Anim. Genet., 31, 8-12.

5. Onishi, A., Iwamoto, M., Akita, T., Mikawa, S., Takeda, K., Awata, T., Hanada, H. and Perry, A.C. (2000) Pig cloning by microinjection of fetal fibroblast nuclei. Science, 289, 1188-1190.

6. Fujishima-Kanaya, N., Toki, D., Suzuki, K., Sawazaki, T., Hiraiwa, H., Iida, M., Hayashi, T., Uenishi, H., Wada, Y., Ito, Y. and Awata, T. (2003) Development of 50 gene-associated microsatellite markers using BAC clones and the construction of a linkage map of swine chromosome 4. Anim. Genet., 34, 135-141.

7. Hamasima, N., Suzuki, H., Mikawa, A., Morozumi, T., Plastow, G. and Mitsuhashi, T. (2003) Construction of a new porcine whole-genome framework map using a radiation hybrid panel. Anim. Genet., 34, 216-220.

8. Uenishi, H., Hiraiwa, H., Yamamoto, R., Yasue, H., Takagaki, Y., Shiina, T., Kikkawa, E., Inoko, H. and Awata, T. (2003) Genomic structure around joining segments and constant regions of swine T-cell receptor alpha/delta (TRA/TRD) locus. Immunology, 109, 515-526.

9. Tanaka, M., Matsumoto, T., Yanai, S., Domukai, M., Toki, D., Hayashi, T., Kiuchi, S., Yasue, H., Uenishi, H., Kobayashi, E. and Awata, T. (2003) Conservation of the syntenies between porcine chromosome 7 and human chromosomes 6, 14 and 15 demonstrated by radiation hybrid mapping and linkage analysis. Anim. Genet., 34, 255-263.

10. Shinkai, H., Morozumi, T., Toki, D., Eguchi-Ogawa, T., Muneta, Y., Awata, T. and Uenishi, H. (2005) Genomic structure of eight porcine chemokine receptors reveals intergene sharing of an exon between CCR1 and XCR1. Gene 349:55-66.

11. Tanaka, M., Ando, A., Renard, C., Chardon, P., Domukai, M., Okumura, N., Awata, T. and Uenishi, H. (2005) Development of dense microsatellite markers in the entire SLA region and evaluation of their polymorphisms in porcine breeds. Immunogenetics 57:690-696.

12. Tanaka, M., Suzuki, K., Morozumi, T., Kobayashi, E., Matsumoto, T., Domukai, M., Eguchi-Ogawa, T., Shinkai, H., Awata, T. and Uenishi , H.(2006) Genomic structure and gene order of the region on swine chromosome 7q1.1->q1.2. Anim. Genet. 37:10-16.

13. Shinkai, H., Muneta, Y., Suzuki, K., Eguchi-Ogawa, T., Awata, T. and Uenishi , H. (2006) Porcine Toll-like receptor 1, 6, and 10 genes: Complete sequencing of genomic region and expression analysis. Mol. Immunol. 43:1474-1480.

14. Yamamoto, R., Uenishi, H., Yasue, H., Takagaki, Y. and Sato, E. (2007) The genomic structure and a novel alternatively spliced form of porcine pTalpha chain. Mol. Immunol. 44:591-597, 2007.

15. Eguchi-Ogawa, T., Morozumi, T., Tanaka, M., Shinkai, H., Okumura, N., Suzuki, K., Awata, T. and Uenishi, H. Analysis of genomic structure of porcine CD1 gene cluster. Genomics, in press.