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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-012682

Length: 1,187

Sequence:  [FASTA format sequence]
CCCCCCGTGA GGTAACAXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
GACGTGCAGA AGCCTGCCGC CTCTTCTCTT CCGCAGCATC ACCAACAGCC CGTACGACTA
GGAACTACCC CAGGTCAGAA CCATGGAGGA CCAGCGCGAC CTCATCTCCG ACCATGAGCA
GCTGCCCCTG CTGGGGCATC GCCCCGGGGC CCCGGATATC AATTGCAGCC GTGGAGCTCT
GTACCCTGGC TTTTCTGTCC TGGTGGCTCT GCTCCTGGCT GGCCACGCCA CCACCACCTA
CTTCTTGTAT TAACTGCAGG GTTCGGCTGG ACGAGCTGAC GGTCCCCTCT CACAACTTGC
GGCTGGAGAT CCTGCGGATG AAACTTCACA AGCCCTCCGC GCCTTTGAGC AGGATGCGGG
TTTCCGCCCC TATGCTGATG CATGCCCTGC CCATGGAAGG CCCGGAGCCT ATGCGCTACG
CCACCTAATA CGGGGACATG ACCCACGACC ACGTGATGCA CCTGCTCGTG AATTCTGACC
CACTGGGAGT GTACCCCAAT CTGATGGGGA GCCTCCCAGA ACACCTGAAG CACCTCAAGA
ATACCATGTA CGGTGTGAAC TGGAAGCTCT TTGAGAACTG GCTGCGTGAG TGGCTCTTGT
TTGATATGAG TAACAACTCT CTGGAGGACA CATGCTTTGT AGTTCCGCAT ACAGACCCGC
TGCAGACTGA CGACCTGACG TCTCGGCTGG GCGTGACCAA GCACGATCTC GGCCAAGTCC
TCGTGTATGA GCTACAGATG CGAGTCCTCA GGCGATGCGT GGTCTACACT TGACTGCCTT
CCAGACTCAG TGCCGCCTCC TTCTGAACAT CATCCATAGG GCTCTGGCAC CTGGCTAGAC
GTCCATCATG GACTCCTCAC GTCTCGTCAC AGGGCCAAAG ATGAATCAAC TCATGTAGGG
CCTGCTTGCA CTCGGTTCAG TCTTCTAGCA AGGAGCCAGG GCCCCTGGGA CTCCCCGGGA
GCGGGGCTGG ATCCCATCGG GAGGACTTGA AGTCCAATAT GGGGGCTGTC CTGGTTGAAA
GAGCGCCCAG GTTCGAATTA ATCCTTTGGG CCAAAACCCT GTGGGCCCCA AAAGGAAAAA
CTGGTGGAGC CCCTTTCAAG CCCTCTAAAA AATAAAAAAA CCGCCTTTAG GGGCCCTCGG
TAAAAAACCA AACCAAAAAA AAAAGGGGCC TTTGTTTCCA CACACCGGTT GCGGGCCACT
AAAGACACCC TCAGGGGCCC AATATT

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		CD74	CD74 molecule, major histocompatibility complex, class II invariant chain	178	7e-67	O
		CD74	CD74 molecule, major histocompatibility complex, class II invariant chain	158	7e-61	O
		CD74	CD74 molecule, major histocompatibility complex, class II invariant chain	95.5	1e-38	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	167	1e-61	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC479329	similar to HLA class II histocompatibility antigen, gamma chain (HLA-DR antigens associated invariant chain) (Ia antigen-associated invariant chain) (Ii) (p33) (CD74 antigen)	164	3e-64	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		MGC127643	similar to CD74 antigen isoform b	191	2e-71	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		CD74	CD74 antigen	244	5e-90	O