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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-027450

Length: 778

Sequence [FASTA format sequence]
TAGGNNGGCT AGTGACTTNA CAGTTTGTAC XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXXXXXXXX X
GTCTGCGAC GTGCGGCCGC CACCGCCACA GGGACATCCG
CAGCGGCCCC AACCCCCGGA CTACTATGAC ACACCCCAAG GCCGAACCCT AGATGAGCCC
CTCGACCTCA TCTTTTCCTT GACCGCCTGC CCTTGCTGGG GCAACGCCAC AGGGCCCCGG
ATATTACGTG CACCCGTGGA CCTCTGTCAC GTGCTTTTCT GTCCTGGTGG CTCTGCTCCT
GGCTGGGCCT GCCCCTGCGT CGTCTTCCTG TCTGACAGCT AGGACGGCTG GGCGAGCTGA
CGGTCGCCTC TCGAGCTTGC CGCTGGAGAG CCTGCGGATG ACGCTTCTGC CGCCCTCCGA
GCCTTTGATC AGATGCGGGT TTACGCCCCC ATGCTGATGC ACGCCCTGCC CCTGTTTTGC
CCAGAGCCTA TGCTCAACGC CGACGAGTAC GGCCACGTGA CCCACTACCA CATGATGCAC
CTGCTCCTGA CCTCTGACCC CCTGGGAGTG TACCCGAAGC TGACTGGGAC CCTCCCAGAA
AGCATGACTT CCCTCAAGAA CACCGTGCAC GGTGTGAACT GGAAGCTCTT TGAGAACTGG
CTGCTTCTCT GGCTCTTGTT TGAGATGACC CTGAACTCGC TGGACGACAC ACCCTTTGAC
GTTCCGCTCA AAGACCCGCT GGAGACGGAC GACCTGTCCT CCGGGCTGGG CGTGACCAAG
CACGATCTCC GCCATTTCAT CCTGTAATAG CGACATACTC CAGCTTTCAG ATTTGCTTGG
ACAGGCCTTG CCTGCGCGCT GGCTCTGAGA CAGCCCATGG TGATTCTCAT CGAATGGCTC
TCTGGTCTGA TTCTGGCTTT TGACACTTGT TGCAAGGGCT TCTTTATGAA GGCAATGTTG
AGGAACACGG GAATCTTTGT AACCAGGTTT ACTCCCGTAA CAGGAACAAT GCCCCCGGGG
ATGACCAAGG TATGTTTTGG TGGGATACCG AAACCTTGTC TTCTACTTAG GCCTGCATTT
CTTTAAAAAG TTTGTAGAAA AAAATATTTA AAAAACACTG AAAAAAAAGG GGTCCTTCCT
TGTCAACAAA ATTGTAAAGT GGAGAACCTT CAAGCTTTAA GGAGAGGGGG AACTGGGACC
CCCCAAAAGT GGAAGACCCT TCTTGGTGTA TCACATGGGG GGGAAATAAA ATTTCATAAA
ACGCCCTTAC TTTGAAATAC CAAATTTCGC AATTTCTCCC GGGGGAAAAT TTTTCTTCAC
CTTCTATCTT TT


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinCD74CD74 molecule, major histocompatibility complex, class II invariant chain1057e-26O
Contig/Assembly ProteinCD74CD74 molecule, major histocompatibility complex, class II invariant chain81.39e-19O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinCd74CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)926e-19O


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC479329similar to HLA class II histocompatibility antigen, gamma chain (HLA-DR antigens associated invariant chain) (Ia antigen-associated invariant chain) (Ii) (p33) (CD74 antigen)84.71e-20O


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinMGC127643similar to CD74 antigen isoform b1148e-26O


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinCD74CD74 antigen1501e-42O


Assembly Member: 1      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
MLN010036H03MLN01_0036_H03.b