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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-041124

Length: 1,088

Sequence:  [FASTA format sequence]
GCCAGAACCA TGGACGACCA ACGCGACCTC ATTCTCCAAC CATGAGCAGC TGCCCATGCT
GGTCCAGCGC CCCGGGGCCC CGGAGAGCAA GTGCAGCCAT GGAGCTCTGT ACACAGGCTT
TTCTGTCCTG GTGGCTCTGC TCCTGGCTGG CCAGGCCACC ACCGCCTACT TCCTGTACCA
TCATCACGGA CAGCTGGACA AGCTGACTGT CACCACTCAA AAATTGCAGC TGGAGAGCCT
GCATATGAAA CTTCCCAAGC CCTCCAAGCC TTTGAACAAG ATGCGGGTTT CCGCCCCCAT
GCTGATGCAC GCCCTGCCCA TGGAAGGCCC TGAACCTATG CCCAACGCCA CCCACTACTG
CAACATGACC CAGGACCACG TGATGCACCT GCTCCTGAAG TCTGACCCCC TGAGAGTGTA
CCCTAAGCTG AAGGGGAGCC TCCCATAAAA CCTGAAACAC CTCAAGAACA CATTGTACTG
TGTGAACTGG AAGCTCGTTG AGAGCCGGCT GCGTCAAAGG CTCTTGTTTG AAATGAGCAA
TAACTCGCTG GAGGAAACAC CCCTTTGAAG GTTCCGCCAA AAAACCACCT GGAGACTGAT
GACCTGTCGC CACGGGGTTG CGCATGACCA ATCAGGATTC TCGGCCATTT CATCCTGTAG
AAACAGAAAC GCCTTCCCCA GCACTGCAGG GCACCATTTT GATGCTCCCA ACCTGCCCGC
CGTCCCCACT GGACGTTATT CCATGGGCCC TGGCAACTAG ATCACCTCTC CCTGGAAGCT
TCAGACACTT CCAAGGCTCG CACAAACCCC AAGGAGGCCT GTGCCCATGC TCTATCCACA
GAGGATCAAG GTCCCGGGAA ACCCTGAACG GGTTGGGCCA ATCCAACACA GAATTCTATT
GGGATTTCAG GGATAGGGAC CCCTCATGAC CTTCAATCAA CACCCACCCC AATAATAATT
TACCTAACTC CCAAAACCTC TTCTTCTTCT TTTAAATAAC AATCTATCGT TATCACCCAC
CTTCCCTCCA CCTTCGATAC CCCCTAACCG ACTAACCTCA ACTCTTTCAC ACCTCCCTAA
CTGGTTTCGA CACCCTACTT CTCAATCTCC CAGCTTTCTT AACACAACTC TTCTATCTTA

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		CD74	CD74 molecule, major histocompatibility complex, class II invariant chain	246	3e-65
		CD74	CD74 molecule, major histocompatibility complex, class II invariant chain	246	3e-65
		CD74	CD74 molecule, major histocompatibility complex, class II invariant chain	180	2e-45

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	220	2e-57

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC479329	similar to HLA class II histocompatibility antigen, gamma chain (HLA-DR antigens associated invariant chain) (Ia antigen-associated invariant chain) (Ii) (p33) (CD74 antigen)	258	7e-69

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		MGC127643	similar to CD74 antigen isoform b	273	2e-73

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		CD74	CD74 antigen	297	2e-84