Assembly Information

[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name: 20110601C-000302

Sequence: [FASTA format sequence] GCTCTGGCAA GGAGCCCAGC CCCAGGATCC CGTTCTGTGA TCCGGAAAGA ACACAGACCA CCCGCCATGG AGTTTCGGCT GAACTGGGTG GTCTTGTTTG CTCTCTTACA AGGTGTCCAG GGTGAGGAGA AGCTGGTGGA GTCTGGAGGA GGCCTGGTGC AGCCTGGGGG GTCTCTGAGA CTCTCCTGTG TCGGCTCTGG ATTCACCTTC AGTAGTTATT CAGTGAGGTG GGTCCGCCAG GCTCCAGGGA AGGGGCTGGA GTGGCTGGCA TATATTAGTA GTAGTGGTGG TATCACCTAC TACGCAGACT CTGTGAAGGG CCGATTCACC ATATCCAGAG ACAACTCCCA GAACACGGCC TATCTGCAAA TGAACAGCCT GAGAACCGAA GACACGGCCC GCTATTACTG TTTAAGAGCA GGGAATCTCT GGGGCCCAGG CGTTGAAGTC GTCGTGTCCT CAGTGTCTGA AACCAGCCCC AAAATCTTCC CACTGACTCT GGGGAGCAGC GAGCCTGCCG GATATGTGGT CATCGCCTGC CTGGTCCGGG ACTTCTTCCC GTCAGAGCCC CTGACAGTAA CCTGGAGCCC TAGTCGCGAG GGCGTTATTG TCAGAAACTT CCCCCCTGCG CAGGCCGGGG GCCTGTACAC CATGAGCAGC CAGCTGACCT TGCCAGTCGA GCAGTGCCCA GCCGATCAGA TCCTGAAGTG CCAAGTGCAG CACCTCTCCA AATCCAGCCA GTCCGTGAAC GTGCCCTGCA AAGTTTTACC TTCAGATCCA TGTCCCCAGT GCTGCAAGCC CAGCCTGTCC CTGCAGCCAC CAGCCCTTGC AGACCTGCTC CTGGGCTCCA ATGCCAGCCT CACCTGCACA CTCAGTGGCC TGAAAAAATC CGAGGGTGTC AGCTTCACCT GGCAGCCCTC AGGTGGGAAG GATGCCGTCC AGGCGTCCCC CAAGCGTGAT TCCTGTGGCT GCTACAGCGT GTTCAGCATC CTGCCAGGCT GTGCTGATCC TTGGAACAAG GA

SNP mapping information

SNP ID Rel. Chr. Location (cM)
Assembly Overview: TOP

Change score limit to

BLAST on RefSeq (Human): TOP

Locus Definition Score E value FL
LOC100134256 PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens]. 183 2e-46 O

LOC100289290 PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens]. 181 1e-45 O

LOC100653084 PREDICTED: hypothetical protein LOC100653084 [Homo sapiens]. 179 3e-45 O

LOC100132941 PREDICTED: hypothetical protein LOC100132941 [Homo sapiens]. 179 4e-45 O

LOC100293211 PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens]. 179 3e-45 O

LOC100132941 PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens]. 179 4e-45 O

LOC100653245 PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens]. 178 6e-45 O

LOC100291917 PREDICTED: hypothetical protein LOC100291917 [Homo sapiens]. 172 4e-43 O

LOC100508797 PREDICTED: hypothetical protein LOC100508797 [Homo sapiens]. 167 2e-41

LOC401847 PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens]. 165 5e-41 O

Locus	Definition	Score	E value	FL
LOC100134256	PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].	183	2e-46	O
LOC100289290	PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].	181	1e-45	O
LOC100653084	PREDICTED: hypothetical protein LOC100653084 [Homo sapiens].	179	3e-45	O
LOC100132941	PREDICTED: hypothetical protein LOC100132941 [Homo sapiens].	179	4e-45	O
LOC100293211	PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].	179	3e-45	O
LOC100132941	PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].	179	4e-45	O
LOC100653245	PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].	178	6e-45	O
LOC100291917	PREDICTED: hypothetical protein LOC100291917 [Homo sapiens].	172	4e-43	O
LOC100508797	PREDICTED: hypothetical protein LOC100508797 [Homo sapiens].	167	2e-41
LOC401847	PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].	165	5e-41	O

BLAST on RefSeq (Mouse): TOP

Locus Definition Score E value FL
Igh-VJ558 PREDICTED: hypothetical protein LOC16061 [Mus musculus]. 209 4e-54 O

Igh-VJ558 PREDICTED: ig alpha chain C region isoform 1 [Mus musculus]. 202 3e-52 O

Igh-VJ558 PREDICTED: ig alpha chain C region [Mus musculus]. 202 3e-52 O

LOC100047361 PREDICTED: hypothetical protein LOC100047361 [Mus musculus]. 115 4e-26

LOC641221 PREDICTED: putative V-set and immunoglobulin domain-containing protein 6-like [Mus musculus]. 110 1e-24 O

LOC100505009 PREDICTED: similar to immunoglobulin mu-chain-like [Mus musculus]. 110 2e-24 O

LOC100505002 PREDICTED: hypothetical protein LOC100505002 [Mus musculus]. 105 7e-23 O

LOC100045292 PREDICTED: hypothetical protein LOC100045292 [Mus musculus]. 95.9 4e-20 O

Vpreb2 immunoglobulin omega chain precursor [Mus musculus]. 51.2 1e-06 O

Vpreb1 immunoglobulin iota chain precursor [Mus musculus]. 50.8 2e-06 O

Locus	Definition	Score	E value	FL
Igh-VJ558	PREDICTED: hypothetical protein LOC16061 [Mus musculus].	209	4e-54	O
Igh-VJ558	PREDICTED: ig alpha chain C region isoform 1 [Mus musculus].	202	3e-52	O
Igh-VJ558	PREDICTED: ig alpha chain C region [Mus musculus].	202	3e-52	O
LOC100047361	PREDICTED: hypothetical protein LOC100047361 [Mus musculus].	115	4e-26
LOC641221	PREDICTED: putative V-set and immunoglobulin domain-containing protein 6-like [Mus musculus].	110	1e-24	O
LOC100505009	PREDICTED: similar to immunoglobulin mu-chain-like [Mus musculus].	110	2e-24	O
LOC100505002	PREDICTED: hypothetical protein LOC100505002 [Mus musculus].	105	7e-23	O
LOC100045292	PREDICTED: hypothetical protein LOC100045292 [Mus musculus].	95.9	4e-20	O
Vpreb2	immunoglobulin omega chain precursor [Mus musculus].	51.2	1e-06	O
Vpreb1	immunoglobulin iota chain precursor [Mus musculus].	50.8	2e-06	O

BLAST on RefSeq (Dog): TOP

Locus Definition Score E value FL
LOC607479 PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris]. 189 5e-48 O

LOC607229 PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris]. 186 2e-47

LOC607010 PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris]. 186 3e-47

LOC606869 PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris]. 186 3e-47

LOC607179 PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris]. 185 7e-47

LOC607113 PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris]. 184 1e-46

LOC606929 PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris]. 184 9e-47 O

LOC607543 PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris]. 180 2e-45

LOC606916 PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris]. 180 2e-45

LOC607001 PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris]. 180 2e-45

Locus	Definition	Score	E value	FL
LOC607479	PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris].	189	5e-48	O
LOC607229	PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris].	186	2e-47
LOC607010	PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris].	186	3e-47
LOC606869	PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris].	186	3e-47
LOC607179	PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris].	185	7e-47
LOC607113	PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris].	184	1e-46
LOC606929	PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris].	184	9e-47	O
LOC607543	PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris].	180	2e-45
LOC606916	PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris].	180	2e-45
LOC607001	PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris].	180	2e-45

BLAST on RefSeq (Cattle): TOP

Locus Definition Score E value FL
LOC524810 hypothetical protein LOC524810 [Bos taurus]. 358 3e-99 O

LOC444875 PREDICTED: IgM [Bos taurus]. 107 2e-23 O

LOC100300716 PREDICTED: Ig heavy chain-like, partial [Bos taurus]. 106 3e-23 O

LOC444876 PREDICTED: IgM [Bos taurus]. 102 4e-22 O

LOC100299578 PREDICTED: hypothetical protein [Bos taurus]. 87 2e-17 O

IGLL1 immunoglobulin lambda-like polypeptide 1 [Bos taurus]. 73.2 4e-13 O

LOC100336430 PREDICTED: hCG96018-like [Bos taurus]. 57.4 2e-08 O

LOC100141470 PREDICTED: IGK protein-like [Bos taurus]. 55.5 8e-08 O

LOC100141470 PREDICTED: IGK protein-like [Bos taurus]. 55.5 8e-08 O

LOC616727 PREDICTED: immunoglobulin lambda-like polypeptide 1-like [Bos taurus]. 54.7 1e-07 O

Locus	Definition	Score	E value	FL
LOC524810	hypothetical protein LOC524810 [Bos taurus].	358	3e-99	O
LOC444875	PREDICTED: IgM [Bos taurus].	107	2e-23	O
LOC100300716	PREDICTED: Ig heavy chain-like, partial [Bos taurus].	106	3e-23	O
LOC444876	PREDICTED: IgM [Bos taurus].	102	4e-22	O
LOC100299578	PREDICTED: hypothetical protein [Bos taurus].	87	2e-17	O
IGLL1	immunoglobulin lambda-like polypeptide 1 [Bos taurus].	73.2	4e-13	O
LOC100336430	PREDICTED: hCG96018-like [Bos taurus].	57.4	2e-08	O
LOC100141470	PREDICTED: IGK protein-like [Bos taurus].	55.5	8e-08	O
LOC100141470	PREDICTED: IGK protein-like [Bos taurus].	55.5	8e-08	O
LOC616727	PREDICTED: immunoglobulin lambda-like polypeptide 1-like [Bos taurus].	54.7	1e-07	O

BLAST on RefSeq (Pig): TOP

Locus Definition Score E value FL
LOC396781 IgG heavy chain [Sus scrofa]. 269 2e-72 O

LOC100621525 PREDICTED: immunoglobulin lambda-like polypeptide 5-like [Sus scrofa]. 75.5 4e-14 O

LOC100623458 PREDICTED: ig lambda chain V-III region SH-like [Sus scrofa]. 56.2 3e-08 O

Locus	Definition	Score	E value	FL
LOC396781	IgG heavy chain [Sus scrofa].	269	2e-72	O
LOC100621525	PREDICTED: immunoglobulin lambda-like polypeptide 5-like [Sus scrofa].	75.5	4e-14	O
LOC100623458	PREDICTED: ig lambda chain V-III region SH-like [Sus scrofa].	56.2	3e-08	O

Assembly Members: 6 TOP

Library Plate Loc. Read Name Accession Full Seq.

CLNT1 0016 B07 CLNT1_0016_B07.b FS658311 AK390896
CLNT1 0059 E01 CLNT1_0059_E01.b FS661714
CLNT1 0064 G11 CLNT1_0064_G11.b FS662125
CLNT1 0069 F01 CLNT1_0069_F01.b FS662524
CLNT1 0073 H12 CLNT1_0073_H12.b FS662878
CLNT1 0129 A02 CLNT1_0129_A02.b HX221343

SNPs: 3 TOP
Loc. Allele Individuals Freq. Type AA Change
Western Meishan
161 A 4 0 0.667 W N CAG/Q
G 2 0 0.333 CGG/R
415 A 4 0 0.667 W N AGA/R
G 2 0 0.333 GGA/G
419 C 4 0 0.667 W N GCA/A
G 2 0 0.333 GGA/G

Alignment: TOP

20110601C-000302 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
CLNT1_0064_G11.b :     nggttttnnnnnnnacgttcgcgnacgxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
CLNT1_0129_A02.b :               nnnnccgttagctgaggxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
CLNT1_0073_H12.b : nnccgctttnnnntttctccgttagcgnacgxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
CLNT1_0069_F01.b :     ngttttttnggnnnccgtcatgcttacgaggxxxxxxxxxxxxxxxxxxxxxxxxx
CLNT1_0016_B07.b :              nnnnnccgtctgctgtcgxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
CLNT1_0059_E01.b :              tttttactttagcgnacgagtgxxxxxxxxxxxxxxxxxxxxxxxxx


20110601C-000302 : ..........................GCTCTGGCAAGGAGCCCAGCCCCAGGATCCCGTT
                   ---------+---------+---------+---------+---------+---------+ 34
CLNT1_0064_G11.b : xxxxxxxxxxxxxxxxxxxxxxxxxxGCTCTGGCAAGGAGCCCAGCCCCAGGATCCCGTT
CLNT1_0129_A02.b : xxxxxxxxxxxxxxxxxxxxxxxxxxGCTCTGGCAAGGAGCCCAGCCCCAGGATCCCGTT
CLNT1_0073_H12.b : xxxxxxxxxxxxxxxxxxxxxxxxxxGCTCTGGCAAGGAGCCCAGCCCCAGGATCCCGTT
CLNT1_0069_F01.b : xxxxxxxxxxxxxxxxxxxxxxxxxxGCTCTGGCAAGGAGCCCAGCCCCAGGATCCCGTT
CLNT1_0016_B07.b : xxxxxxxxxxxxxxxxxxxxxxxxxxGCTCTGGCAAGGAGCCCAGCCCCAGGATCCCGTT
CLNT1_0059_E01.b : xxxxxxxxxxxxxxxxxxxxxxxxxxGCTCTGGCAAGGAGCCCAGCCCCAGGATCCCGTT


20110601C-000302 : CTGTGATCCGGAAAGAACACAGACCACCCGCCATGGAGTTTCGGCTGAACTGGGTGGTCT
                   ---------+---------+---------+---------+---------+---------+ 94
CLNT1_0064_G11.b : CTGTGATCCGGAAAGAACACAGACCACCCGCCATGGAGTTTCGGCTGAACTGGGTGGTCT
CLNT1_0129_A02.b : CTGTGATCCGGAAAGAACACAGACCACCCGCCATGGAGTTTCGGCTGAACTGGGTGGTCT
CLNT1_0073_H12.b : CTGTGATCCGGAAAGAACACAGACCACCCGCCATGGAGTTTCGGCTGAACTGGGTGGTCT
CLNT1_0069_F01.b : CTGTGATCCGGAAAGAACACAGACCACCCGCCATGGAGTTTCGGCTGAACTGGGTGGTCT
CLNT1_0016_B07.b : CTGTGATCCGGAAAGAACACAGACCACCCGCCATGGAGTTTCGGCTGAACTGGGTGGTCT
CLNT1_0059_E01.b : CTGTGATCCGGAAAGAACACAGACCACCCGCCATGGAGTTTCGGCTGAACTGGGTGGTCT


20110601C-000302 : TGTTTGCTCTCTTACAAGGTGTCCAGGGTGAGGAGAAGCTGGTGGAGTCTGGAGGAGGCC
                   ---------+---------+---------+---------+---------+---------+ 154
CLNT1_0064_G11.b : TGTTTGCTCTCTTACAAGGTGTCCAGGGTGAGGAGAAGCTGGTGGAGTCTGGAGGAGGCC
CLNT1_0129_A02.b : TGTTTGCTCTCTTACAAGGTGTCCAGGGTGAGGAGAAGCTGGTGGAGTCTGGAGGAGGCC
CLNT1_0073_H12.b : TGTTTGCTCTCTTACAAGGTGTCCAGGGTGAGGAGAAGCTGGTGGAGTCTGGAGGAGGCC
CLNT1_0069_F01.b : TGTTTGCTCTCTTACAAGGTGTCCAGGGTGAGGAGAAGCTGGTGGAGTCTGGAGGAGGCC
CLNT1_0016_B07.b : TGTTTGCTCTCTTACAAGGTGTCCAGGGTGAGGAGAAGCTGGTGGAGTCTGGAGGAGGCC
CLNT1_0059_E01.b : TGTTTGCTCTCTTACAAGGTGTCCAGGGTGAGGAGAAGCTGGTGGAGTCTGGAGGAGGCC


20110601C-000302 : TGGTGCAGCCTGGGGGGTCTCTGAGACTCTCCTGTGTCGGCTCTGGATTCACCTTCAGTA
                   ---------+---------+---------+---------+---------+---------+ 214
CLNT1_0064_G11.b : TGGTGCGGCCTGGGGGGTCTCTGAGACTCTCCTGTGTCGGCTCTGGATCCACCTTCAGTA
CLNT1_0129_A02.b : TGGTGCGGCCTGGGGGGTCTCTGAGACTCTCCTGTGTCGGCTCTGGATTCACCTTCAGTA
CLNT1_0073_H12.b : TGGTGCAGCCTGGGGGGTCTCTGAGACTCTCCTGTGTCGACTCTGGATTCACCTTCAGTA
CLNT1_0069_F01.b : TGGTGCAGCCTGGGGGGTCTCTGAGACTCTCCTGTGTCGGCTCTGGATTCACCTTCAGTA
CLNT1_0016_B07.b : TGGTGCAGCCTGGGGGGTCTCTGAGACTCTCCTGTGTCGGCTCTGGATTCACCTTCAGTA
CLNT1_0059_E01.b : TGGTGCAGCCTGGGGGGTCTCTGAGACTCTCCTGTGTCGGCTCTGGATTCACCTTCAGTA


20110601C-000302 : GTTATTCAGTGAGGTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGCTGGCATATA
                   ---------+---------+---------+---------+---------+---------+ 274
CLNT1_0064_G11.b : GTTATTCAGTGAGGTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGCTGGCATATA
CLNT1_0129_A02.b : GTTATTCAGTGAGGTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGCTGGCATATA
CLNT1_0073_H12.b : GTTATTCAATGAGGTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGCTGGCATATA
CLNT1_0069_F01.b : GTTATTCAGTGAGGTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGCTGGCATATA
CLNT1_0016_B07.b : GTTATTCAGTGAGGTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGCTGGCATATA
CLNT1_0059_E01.b : GTTATTCAGTGAGGTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGCTGGCATATA


20110601C-000302 : TTAGTAGTAGTGGTGGTATCACCTACTACGCAGACTCTGTGAAGGGCCGATTCACCATAT
                   ---------+---------+---------+---------+---------+---------+ 334
CLNT1_0064_G11.b : TTAGTAGTAGTGGTGGTATCACCTACTACGCAGACTCTGTGAAGGGCCGATTCACCATAT
CLNT1_0129_A02.b : TTAGTAGTAGTGGTGGTATCACCTACTACGCAGACTCTGTGAAGGGCCGATTCACCATAT
CLNT1_0073_H12.b : TTAGTAGTAGTGGTGGTATCACCTACTACGCAGACTCTGTGAAGGGCCGATTCACCATAT
CLNT1_0069_F01.b : TTAGTAGTAGTGGTGGTATCACCTACTACGCAGACTCTGTGAAGGGCCGATTCACCATAT
CLNT1_0016_B07.b : TTAGTAGTAGTGGTGGTATCACCTACTACGCAGACTCTGTGAAGGGCCGATTCACCATAT
CLNT1_0059_E01.b : TTAGTAGTAGTGGTGGTATCACCTACTACGCAGACTCTGTGAAGGGCCGATTCACCATAT


20110601C-000302 : CCAGAGACAACTCCCAGAACACGGCCTATCTGCAAATGAACAGCCTGAGAACCGAAGACA
                   ---------+---------+---------+---------+---------+---------+ 394
CLNT1_0064_G11.b : CCAGAGACAACTCCCAGAACACGGCCTATCTGCAAATGAACAGCCTGAGAACCGAAGACA
CLNT1_0129_A02.b : CCAGAGACAACTCCCAGAACACGGCCTATCTGCAAATGAACAGCCTGAGAACCGAAGACA
CLNT1_0073_H12.b : CCAGAGACAACTCCCAGAACACGGCCTATCTGCAAATGAACAGCCTGAGAACCGAAGACA
CLNT1_0069_F01.b : CCAGAGACAACTCCCAGAACACGGCCTATCTGCAAATGAACAGCCTGAGAACCGAAGACA
CLNT1_0016_B07.b : CCAGAGACAACTCCCAGAACACGGCCTATCTGCAAATGAACAGCCTGAGAACCGAAGACA
CLNT1_0059_E01.b : CCAGAGACAACTCCCAGAACACGGCCTATCTGCAAATGAACAGCCTGAGAACCGAAGACA


20110601C-000302 : CGGCCCGCTATTACTGTTTAAGAGCAGGGAATCTCTGGGGCCCAGGCGTTGAAGTCGTCG
                   ---------+---------+---------+---------+---------+---------+ 454
CLNT1_0064_G11.b : CGGCCCGCTATTACTGTTTAGGAGGAGGGAATCTCTGGGGCCCAGGCGTTGAAGTCGTCG
CLNT1_0129_A02.b : CGGCCCGCTATTACTGTTTAGGAGGAGGGAATCTCTGGGGCCCAGGCGTTGAAGTCGTCG
CLNT1_0073_H12.b : CGGCCCGCTATTACTGTTTAAGAGCAGGGAATCTCTGGGGCCCAGGCGTTGAAGTCGTCG
CLNT1_0069_F01.b : CGGCCCGCTATTACTGTTTAAGAGCAGGGAATCTCTGGGGCCCAGGCGTTGAAGTCGTCG
CLNT1_0016_B07.b : CGGCCCGCTATTACTGTTTAAGAGCAGGGAATCTCTGGGGCCCAGGCGTTGAAGTCGTCG
CLNT1_0059_E01.b : CGGCCCGCTATTACTGTTTAAGAGCAGGGAATCTCTGGGGCCCAGGCGTTGAAGTCGTCG


20110601C-000302 : TGTCCTCAGTGTCTGAAACCAGCCCCAAAATCTTCCCACTGACTCTGGGGAGCAGCGAGC
                   ---------+---------+---------+---------+---------+---------+ 514
CLNT1_0064_G11.b : TGTCCTCAGTGTCTGAAACCAGCCCCAAAATCTTCCCACTGACTCTGGGGAGCAGCGAGC
CLNT1_0129_A02.b : TGTCCTCAGTGTCTGAAACCAGCCCCAAAATCTTCCCACTGACTCTGGGGAGCAGCGAGC
CLNT1_0073_H12.b : TGTCCTCAGTGTCTGAAACCAGCCCCAAAATCTTCCCACTGACTCTGGGGAGCAGCGAGC
CLNT1_0069_F01.b : TGTCCTCAGTGTCTGAAACCAGCCCCAAAATCTTCCCACTGACTCTGGGGAGCAGCGAGC
CLNT1_0016_B07.b : TGTCCTCAGTGTCTGAAACCAGCCCCAAAATCTTCCCACTGACTCTGGGGAGCAGCGAGC
CLNT1_0059_E01.b : TGTCCTCAGTGTCTGAAACCAGCCCCAAAATCTTCCCACTGACTCTGGGGAGCAGCGAGC


20110601C-000302 : CTGCCGGATATGTGGTCATCGCCTGCCTGGTCCGGGACTTCTTCCCGTCAGAGCCCCTGA
                   ---------+---------+---------+---------+---------+---------+ 574
CLNT1_0064_G11.b : CTGCCGGATATGTGGTCATCGCCTGCCTGGTCCGGGACTTCTTCCCGTCAGAGCCCCTGA
CLNT1_0129_A02.b : CTGCCGGATATGTGGTCATCGCCTGCCTGGTCCGGGACTTCTTCCCGTCAGAGCCCCTGA
CLNT1_0073_H12.b : CTGCCGGATATGTGGCCATCGCCTGCCTGGTCCGGGACTTCTTCCCGTCAGAGCCCCTGA
CLNT1_0069_F01.b : CTGCCGGATATGTGGTCATCGCCTGCCTGGTCCGGGACTTCTTCCCGTCAGAGCCCCTGA
CLNT1_0016_B07.b : CTGCCGGATATGTGGTCATCGCCTGCCTGGTCCGGGACTTCTTCCCGTCAGAGCCCCTGA
CLNT1_0059_E01.b : CTGCCGGATATGTGGTCATCGCCTGCCTGGTCCGGGACTTCTTCCCGTCAGAGCCCCTGA


20110601C-000302 : CAGTAACCTGGAGCCCTAGTCGCGAGGGCGTTATTGTCAGAAACTTCCCCCCTGCGCAGG
                   ---------+---------+---------+---------+---------+---------+ 634
CLNT1_0064_G11.b : CAGTAACCTGGAGCCCTAGTCGCGAGGGCGTTATTGTCAGAAACTTCCCCCCTGCGCAGG
CLNT1_0129_A02.b : CAGTAACCTGGAGCCCTAGTCGCGAGGGCGTTATTGTCAGAAACTTCCCCCCTGCGCAGG
CLNT1_0073_H12.b : CAGTAACCTGGAGCCCTAGTCGCGAGGGCGTTATTGTCAGAAACTTCCCCCCTGCGCAGG
CLNT1_0069_F01.b : CAGTAACCTGGAGCCCTAGTCGCGAGGGCGTTATTGTCAGAAACTTCCCCCCTGCGCAGG
CLNT1_0016_B07.b : CAGTAACCTGGAGCCCTAGTCGCGAGGGCGTTATTGTCAGAAACTTCCCCCCTGCGCAGG
CLNT1_0059_E01.b : CAGTAACCTGGAGCCCTAGTCGCGAGGGCGTTATTGTCAGAAACTTCCCCCCTGCGCAGG


20110601C-000302 : CCGGGGGCCTGTACACCATGAGCAGCCAGCTGACCTTGCCAGTCGAGCAGTGCCCAGCCG
                   ---------+---------+---------+---------+---------+---------+ 694
CLNT1_0064_G11.b : CCGGGGGCCTGTACACCATGAGCAGCCAGCTGACCTTGCCAGTCGAGCAGTGCCCAGCCG
CLNT1_0129_A02.b : CCGGGGGCCTGTACACCATGAGCAGCCAGCTGACCTTGCCAGTCGAGCAGTGCCCAGCCG
CLNT1_0073_H12.b : CCGGGGGCCTGTACACCATGAGCAGCCAGCTGACCTTGCCAGTCGAGCAGTGCCCAGCCG
CLNT1_0069_F01.b : CCGGGGGCCTGTACACCATGAGCAGCCAGCTGACCTTGCCAGTCGAGCAGTGCCCAGCCG
CLNT1_0016_B07.b : CCGGGGGCCTGTACACCATGAGCAGCCAGCTGACCTTGCCAGTCGAGCAGTGCCCAGCCG
CLNT1_0059_E01.b : CCGGGGGCCTGTACACCATGAGCAGCCAGCTGACCTTGCCAGTCGAGCAGTGCCCAGCCG


20110601C-000302 : ATCAGATCCTGAAGTGCCAAGTGCAGCACCTCTCCAAATCCAGCCAGTCCGTGAACGTGC
                   ---------+---------+---------+---------+---------+---------+ 754
CLNT1_0064_G11.b : ATCAGATCCTGAAGTGCCAAGTGCAGCACCTCTCCAAATCCAGCCAGTCCGTGAACGTGC
CLNT1_0129_A02.b : ATCAGATCCTGAAGTGCCAAGTGCAGCACCTCTCCAAATCCAGCCAGTCCGTGAACGTGC
CLNT1_0073_H12.b : ATCAGATCCTGAAGTGCCAAGTGCAGCACCTCTCCAAATCCAGCCAGTCCGTGAACGTGC
CLNT1_0069_F01.b : ATCAGATCCTGAAGTGCCAAGTGCAGCACCTCTCCAAATCCAGCCAGTCCGTGAACGTGC
CLNT1_0016_B07.b : ATCAGATCCTGAAGTGCCAAGTGCAGCACCTCTCCAAATCCAGCCAGTCCGTGAACGTGC
CLNT1_0059_E01.b : ATCAGATCCTGAAGTGCCAAGTGCAGCACCTCTCCAAATCCAGCCAGTCCGTGAACGTGC


20110601C-000302 : CCTGCAAAGTTTTACCTTCAGATCCATGTCCCCAGTGCTGCAAGCCCAGCCTGTCCCTGC
                   ---------+---------+---------+---------+---------+---------+ 814
CLNT1_0064_G11.b : CCTGCNAAGTTTTACCTTCAGAATCATGTCCCCAGTGCTGNCAGCCCAGCCCTGTCCCGC
CLNT1_0129_A02.b : CCTGCAAAGTTTTACCTTCAGATCCATGTCCCCAGTGCTGCAAGCCCAGCCTGTCCCTGC
CLNT1_0073_H12.b : CCTGCAAAGTTTTAC*TTCAGATCCATGTCCCCAGTGCTGCAAGCCCAGCCTGGTCCTGC
CLNT1_0069_F01.b : CCTGCAAAGTTTTACCTTCAGATCCATGTCCCCAGTGCTGCAAGCCCAGCCTGTCCCTGC
CLNT1_0016_B07.b : CCCTGCAAGTTTTACCTTCAGAATCATGTCCCCAGTGCTGNCAGCCCAGCCTGTCCCTGC
CLNT1_0059_E01.b : CCTGCNAAGTTTTACCTTCAGATCCATGTCCCCAGTGCTGNCAGCCCAGCCTGGTCCTGC


20110601C-000302 : AGCCACCAGCCCTTGCAGACCTGCTCCTGGGCTCCAATGCCAGCCTCACCTGCACACTCA
                   ---------+---------+---------+---------+---------+---------+ 874
CLNT1_0064_G11.b : AGCCACCAGCCCTTGCAGAACTGCTCCTGGGCTCCNATGCNNNAGCTCACTGCACACTCA
CLNT1_0129_A02.b : AGCCACCACCCTTTGCAGAACTGCTCCTGGGCTCCAATGCCAGCCTCACCTGCACACTCA
CLNT1_0073_H12.b : AGCCACCA*CCCTTGCAGAACTGCTCCTGGGGCTCAATGCCAGCCTCACCTGCACACTCA
CLNT1_0069_F01.b : AGCCACCAGCCCTTGCAGACCTGCTCCTGGGCTCCAATGNCAGCCTCACCTGCACACTCA
CLNT1_0016_B07.b : AGCCACCAGCCCTTGCAGACCTGCTCCTGGGCTCCAATGGCAGCCTCACCTGCACACTCA
CLNT1_0059_E01.b : AGCCACCAGCCCTTGCAGACCTGCTCCTGGGCTCCAATGCCAGCCTCACCTGCACACTCA


20110601C-000302 : GTGGCCTGAAAAAATCCGAGGGTGTCAGCTTCACCTGGCAGCCCTCA*GGTGGGAAGGAT
                   ---------+---------+---------+---------+---------+---------+ 933
CLNT1_0064_G11.b : GTGGGCTGAAAAAATCCGAAGGTGTCAGCTTCACCTGGCAGCCCTCAAGGTGGGAAGGAT
CLNT1_0129_A02.b : GTGGCCTGAAAAAATCGGAGGGTGTCAGCTTCACCTGGCAGCCCTCA*GGTGGGAAGGAT
CLNT1_0073_H12.b : GTGGCCTGAAAAAATCCGAGGGTGTCAGCTTCACCTGGCAGCCCTCA*GGTGGGGAGGAA
CLNT1_0069_F01.b : GTGGGCTGGAAAAATCCGAGGGTGTCAGCTTCACCTGNCAGCCCTCA*GGTGGGAAGGAT
CLNT1_0016_B07.b : GTGGCCCTGAAAAAATCGAGGGTGTCAGCTTCACCTGGCAGCCCTCA*NGTGGAAAGGAT
CLNT1_0059_E01.b : GTGGGCTG*AAAAATCCGAGGGTGTCAGCTTCACCTGGCAGCCCTCA*GGTTGGAAGGAT


20110601C-000302 : GCCGTCCAGGCGTCCCCCAAGCGTGATTCCTGTGGCTGCTACAGCGTGTTCAGCATCCTG
                   ---------+---------+---------+---------+---------+---------+ 993
CLNT1_0064_G11.b : GNNCGGTCAGCGTCCCCCcagcgtgaatccctgggnntgcctaaagcgtgtcaagaatcc
CLNT1_0129_A02.b : GCCGTCCAGC*GTCCCCCAAGCGTGATTCCggggctgctacagcgtgtcagaatcctgcc
CLNT1_0073_H12.b : TGCGTCCCAGCGTCCCCCAgcgtgatccttgtgctgctacagcgtgncagaatcctgcag
CLNT1_0069_F01.b : GCCGTCCAGG*CGTCCCCCAGCGTGATTCCTGTGGCTGCTACAGCGTGTTCAGAATCCTG
CLNT1_0016_B07.b : GCCGTCAGGC*GTCCCCCCCGCGTGATTTCTGTGGCTGCTACAGCGTGT*CAGCATCCTG
CLNT1_0059_E01.b : GCCGTCCAGGCGTCCCCCACGCGGTGATCCTGTGGCTGCTACAGCGTGGTCAGCATCCTG


20110601C-000302 : CCAGGCTGTGCTGATCCTTGGAACAAGGA...............................
                   ---------+---------+---------+---------+---------+---------+ 1022
CLNT1_0064_G11.b : tggcagggctgggctgattctttgaacaaaggaaaaaaatttctccgcgccccccgccca
CLNT1_0129_A02.b : gggtttgctgatccttgaaaaaaggaaaaactttctctggcccgccgcccctttgaattg
CLNT1_0073_H12.b : cttggctgatcctggaaaaagggaaagaattttctgcaccgccgccacctgaattgaaag
CLNT1_0069_F01.b : CCAGGCTGTGCTaatcttggaacaaaggaaaaaattccctgcaccgccgccattttgagt
CLNT1_0016_B07.b : CCAGGCTGTGCTGATCCTTGGAcaaagnaagaaattctcctgcacgccgccattctgatt
CLNT1_0059_E01.b : CCAGGCTGTGCTGATCTTGGGAACAAGGAaaagacttctcctgcccgccgccccatttga


20110601C-000302 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1022
CLNT1_0064_G11.b : cttcgaattgaaaagggggcttacgccccctttcccaaacccaaatggaaaattttccgg
CLNT1_0129_A02.b : aagaggggctatcccccccttcccaacccaagtgaacatttcggccccattcccttgttc
CLNT1_0073_H12.b : ggggttaccccccctttccaaccaagtgtaccgtttcggccaagccccttgtgccccccc
CLNT1_0069_F01.b : tgaaaaggggcttacgccccctccccaacccaaaggaaacgttcgggcccaggtcacctg
CLNT1_0016_B07.b : gtagaagggctaacgccaccttcccaacccaaatgaaacgttccggcccaggcccctgtt
CLNT1_0059_E01.b : atttgagaaggggcttacggccccttccccaacccaaagtgaaccgttcggccccaggtc


20110601C-000302 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1022
CLNT1_0064_G11.b : gccccaggcaacttgtggtcccccccccggaaaaaaagggccccctcaaatggggaaatc
CLNT1_0129_A02.b : gcccccccttgaagaacgggccccaagactgggaactaaatgccgggggggttctcccca
CLNT1_0073_H12.b : ccaaaaacgggccccaaaatgggaacctaaatcccggggggggttcccccaagatttttt
CLNT1_0069_F01.b : ttcccccccttggaaaaatggccccaaaactgtgaaactaaattccggtgcgggtttacc
CLNT1_0016_B07.b : gcccccccttgaaaaactggcctaaagactgggacctgaattcggggggggctcccccaa
CLNT1_0059_E01.b : cccttttgccccccccttgaaaaaattggccccaaagactgggaacccaaatgccggggg


20110601C-000302 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1022
CLNT1_0064_G11.b : aaaaccccgggggggggttctcccccaaaaaatttgttttttattttccaggggggaaaa
CLNT1_0129_A02.b : aatttttttgtatgtttaaggggacaaacccccaaaaaattctttgggattcgcaaaggg
CLNT1_0073_H12.b : ttatttttcaggggccaaa                                        
CLNT1_0069_F01.b : cccgaaattcttggcatatttcaaggggaaaaaccccccaaaaatctcttgggaaatctc
CLNT1_0016_B07.b : aatttttggtaatgcttaagggccaaattcccgaaaaacctttgggacctcaaaagtggg
CLNT1_0059_E01.b : ggggctcccccaaaaattgttttttgaatgtttaaaggggccaaaattccccggaaaaac


20110601C-000302 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1022
CLNT1_0064_G11.b : aaaccccccacaaatactttgtggaatcctccaaaaaggc                   
CLNT1_0129_A02.b : gggcccccctcccctaaagtgtttgttggaaaagaaaaggaaccttcttggggggagggc
CLNT1_0073_H12.b :                                                             
CLNT1_0069_F01.b : caaaagtgggggcccccccctcacggaaagggttgggggaaca                
CLNT1_0016_B07.b : atcccccatctcgtaagtggttttggacaaaaaaaaaa                     
CLNT1_0059_E01.b : ccctcgggataccggaaat                                        


20110601C-000302 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1022
CLNT1_0064_G11.b :                                                             
CLNT1_0129_A02.b : cgtcttcataaacacgggggggaaccacgtggtgtgaagaaggttgtcccccccttaatt
CLNT1_0073_H12.b :                                                             
CLNT1_0069_F01.b :                                                             
CLNT1_0016_B07.b :                                                             
CLNT1_0059_E01.b :                                                             


20110601C-000302 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1022
CLNT1_0064_G11.b :                                                             
CLNT1_0129_A02.b : ttctcc                                                     
CLNT1_0073_H12.b :                                                             
CLNT1_0069_F01.b :                                                             
CLNT1_0016_B07.b :                                                             
CLNT1_0059_E01.b :