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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-000396

Length: 974

Sequence [FASTA format sequence]
AGCTCTGGCA AGGAGCCCAG CCCCAGGATC CCGTTCTGTG ATCCGGAAAG AACACAGACC
ACCCGCCATG GAGTTTCGGC TGAACTGGGT GGTCTTGTTT GCTCTCTTAC AAGCTGTCCA
GGGTGAGGAG AAGCTGGTGG AGTCTGGAGG AGGCCTGGTG CAGCCTGGGG GGTCTCTCAG
ACTCTCCTGT GTCGGCTCTG GGTTCACCTT CAGTAAATAT TCGGTGAGGT GGGTCCGCCA
GGCTCCAGGG AAGGGGCTGG AGTGGCTGGC ATATATTGAT AGTAGTGGTG GTAGCACCTA
CTACGCAGAC TCTGTGGAGG GCCGATTCAC CATCTCCAGA GACAACTCCC AGAACACGGC
CTATTTGCAA ATGAACAGCC TGAGAACCGA AGACACGGCC CGCTATCTCT GTTTCGGGGG
CGGGAGTTTC TGGGGCCCAG GCGTTGAAGT CGTCGTGTCC TCAGTGTCTG AAATCAGCCC
CAAAATCTTC CCACTGACTC TGGGGAGCAG CGAGCCTGCC GGATATGTGG TCATCGCCTG
CCTGGTCCGG GACTTCTTCC CGTCAGAGCC CCTGACAGTA ACCTGGAGCC CTAGTCGCGA
GGGCGTTATT GTCAGAAACT TCCCCCCTGC GCAGGCCGGG GGCCTGTACA CCATGAGCAG
CCAGCTGACC TTGCCAGTCG AGCAGTGCCC AGCCGATCAG ATCCTGAAGT GCCAAGTGCA
GCACCTCTCC AAATCCAGCC AGTCCGTGAA CGTGCCCTGC AAAGTTTTAC CTTCAGATCC
ATGTCCCCAG TGCTGCAAGC CCAGCCTGTC CCTGCAGCCA CCAGCCCTTG CAGACCTGCT
CCTGGGCTCC AATGCCAGCC CCCACTGCAC ACTCAGTGGC CTGAAAAAAT CCGAAGGTGT
CAGCTTCACC TGGCAGCCCT CAGGTGGGAA AGGAATCCGT CAGGCGTCCC CCAGCGTGAT
TCCTGTGGTT GCTA


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC100134256PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens]. 1762e-44O
Contig/Assembly ProteinLOC100653084PREDICTED: hypothetical protein LOC100653084 [Homo sapiens]. 1723e-43O
Contig/Assembly ProteinLOC100289290PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens]. 1719e-43O
Contig/Assembly ProteinLOC100132941PREDICTED: hypothetical protein LOC100132941 [Homo sapiens]. 1694e-42O
Contig/Assembly ProteinLOC100132941PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens]. 1694e-42O
Contig/Assembly ProteinLOC100293211PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens]. 1695e-42O
Contig/Assembly ProteinLOC100653245PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens]. 1686e-42O
Contig/Assembly ProteinLOC100508797PREDICTED: hypothetical protein LOC100508797 [Homo sapiens]. 1623e-40
Contig/Assembly ProteinLOC100291917PREDICTED: hypothetical protein LOC100291917 [Homo sapiens]. 1611e-39O
Contig/Assembly ProteinLOC401847PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens]. 1563e-38O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinIgh-VJ558PREDICTED: hypothetical protein LOC16061 [Mus musculus]. 1618e-40O
Contig/Assembly ProteinIgh-VJ558PREDICTED: ig alpha chain C region isoform 1 [Mus musculus]. 1548e-38O
Contig/Assembly ProteinIgh-VJ558PREDICTED: ig alpha chain C region [Mus musculus]. 1548e-38O
Contig/Assembly ProteinLOC100047361PREDICTED: hypothetical protein LOC100047361 [Mus musculus]. 1071e-23
Contig/Assembly ProteinLOC641221PREDICTED: putative V-set and immunoglobulin domain-containing protein 6-like [Mus musculus]. 1071e-23O
Contig/Assembly ProteinLOC100505009PREDICTED: similar to immunoglobulin mu-chain-like [Mus musculus]. 1024e-22O
Contig/Assembly ProteinLOC100505002PREDICTED: hypothetical protein LOC100505002 [Mus musculus]. 97.81e-20O
Contig/Assembly ProteinLOC100045292PREDICTED: hypothetical protein LOC100045292 [Mus musculus]. 926e-19O


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC607479PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris]. 1841e-46O
Contig/Assembly ProteinLOC606869PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris]. 1802e-45
Contig/Assembly ProteinLOC607229PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris]. 1795e-45
Contig/Assembly ProteinLOC607179PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris]. 1788e-45
Contig/Assembly ProteinLOC607010PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris]. 1788e-45
Contig/Assembly ProteinLOC607113PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris]. 1762e-44
Contig/Assembly ProteinLOC607001PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris]. 1764e-44
Contig/Assembly ProteinLOC606929PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris]. 1762e-44O
Contig/Assembly ProteinLOC606916PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris]. 1733e-43
Contig/Assembly ProteinLOC607543PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris]. 1726e-43


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC524810hypothetical protein LOC524810 [Bos taurus]. 2889e-79O
Contig/Assembly ProteinLOC444875PREDICTED: IgM [Bos taurus]. 1002e-21O
Contig/Assembly ProteinLOC100300716PREDICTED: Ig heavy chain-like, partial [Bos taurus]. 1003e-21O
Contig/Assembly ProteinLOC444876PREDICTED: IgM [Bos taurus]. 96.73e-20O
Contig/Assembly ProteinLOC100299578PREDICTED: hypothetical protein [Bos taurus]. 80.13e-15O
Contig/Assembly ProteinIGLL1immunoglobulin lambda-like polypeptide 1 [Bos taurus]. 72.84e-13O
Contig/Assembly ProteinLOC100336430PREDICTED: hCG96018-like [Bos taurus]. 53.92e-07O
Contig/Assembly ProteinLOC100336586PREDICTED: immunoglobulin iota chain-like, partial [Bos taurus]. 50.13e-06O


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC396781IgG heavy chain [Sus scrofa]. 2523e-67O
Contig/Assembly ProteinLOC100621525PREDICTED: immunoglobulin lambda-like polypeptide 5-like [Sus scrofa]. 65.16e-11O


Assembly Members: 5      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
CLNT10061C11CLNT1_0061_C11.bFS661869 
CLNT10062C11CLNT1_0062_C11.bFS661942 
CLNT10066B05CLNT1_0066_B05.bFS662230 
CLNT10111F10CLNT1_0111_F10.bHX220019 
CLNT10115B08CLNT1_0115_B08.bHX220290 AK400430

  

SNPs: 2      TOP
Loc.AlleleIndividualsFreq.TypeAA Change
WesternMeishan
178C300.600WSCTC/L
G200.400CTG/L
202A200.400WSGGA/G
G300.600GGG/G


Alignment:      TOP

20110601C-000396 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
CLNT1_0115_B08.b : nnnnccttttgctgtangxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
CLNT1_0111_F10.b : tttttccgatagctgtacgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
CLNT1_0061_C11.b : nnggtatttnnnnnnnnccgtttgcgnacgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
CLNT1_0062_C11.b : nnggtttttnnnnnnccgttagcgnacgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
CLNT1_0066_B05.b : tttttcctcttgccgnacgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20110601C-000396 : ........................AGCTCTGGCAAGGAGCCCAGCCCCAGGATCCCGTTC
---------+---------+---------+---------+---------+---------+ 36
CLNT1_0115_B08.b : xxxxxxxxxxxxxxxxxxxxxxxtAGCTCTGGCAAGGAGCCCAGCCCCAGGATCCCGTTC
CLNT1_0111_F10.b : xxxxxxxxxxxxxxxxxxxxxxxxxGCTCTGGCAAGGAGCCCAGCCCCAGGATCCCGTTC
CLNT1_0061_C11.b : xxxxxxxxxxxxxxxxxxxxxxxxxGCTCTGGCAAGGAACCCAGCCCCAGGATCCCGTTC
CLNT1_0062_C11.b : xxxxxxxxxxxxxxxxxxxxxxxxxGCTCTGGCAAGGAACCCAGCCCCAGGATCCCGTTC
CLNT1_0066_B05.b : xxxxxxxxxxxxxxxxxxxxxxxxxGCTCTGGCAAGGAGCCCAGCCCCAGGATCCCGTTC
20110601C-000396 : TGTGATCCGGAAAGAACACAGACCACCCGCCATGGAGTTTCGGCTGAACTGGGTGGTCTT
---------+---------+---------+---------+---------+---------+ 96
CLNT1_0115_B08.b : TGTGATCCGGAAAGAACACAGACCACCCGCCATGGAGTTTCGGCTGAACTGGGTGGTCTT
CLNT1_0111_F10.b : TGTGATCCGGAAAGAACACAGACCACCCGCCATGGAGTTTCGGCTGAACTGGGTGGTCTT
CLNT1_0061_C11.b : TGTGATCCGGAAAGAACACAGACCACCCGCCATGGAGTTTCGGCTGAACTGGGTGGTCTT
CLNT1_0062_C11.b : TGTGATCCGGAAAGAACACAGACCACCCGCCATGGAGTTTCGGCTGAACTGGGTGGTCTT
CLNT1_0066_B05.b : TGTGATCCGGAAAGAACACAGACCACCCGCCATGGAGTTTCGGCTGAACTGGGTGGTCTT
20110601C-000396 : GTTTGCTCTCTTACAAGCTGTCCAGGGTGAGGAGAAGCTGGTGGAGTCTGGAGGAGGCCT
---------+---------+---------+---------+---------+---------+ 156
CLNT1_0115_B08.b : GTTTGCTCTCTTACAAGCTGTCCAGGGTGAGGAGAAGCTGGTGGAGTCTGGAGGAGGCCT
CLNT1_0111_F10.b : GTTTGCTCTCTTACAAGCTGTCCAGGGTGAGGAGAAGCTGGTGGAGTCTGGAGGAGGCCT
CLNT1_0061_C11.b : GTTTGCTCTCTTACAAGCTGTCCAGGGTGAGGAGAAGCTGGTGGAGTCTGGAGGAGGCCT
CLNT1_0062_C11.b : GTTTGCTCTCTTACAAGCTGTCCAGGGTGAGGAGAAGCTGGTGGAGTCTGGAGGAGGCCT
CLNT1_0066_B05.b : GTTTGCTCTCTTACAAGCTGTCCAGGGTGAGGAGAAGCTGGTGGAGTCTGGAGGAGGCCT
20110601C-000396 : GGTGCAGCCTGGGGGGTCTCTCAGACTCTCCTGTGTCGGCTCTGGGTTCACCTTCAGTAA
---------+---------+---------+---------+---------+---------+ 216
CLNT1_0115_B08.b : GGTGCAGCCTGGGGGGTCTCTGAGACTCTCCTGTGTCGGCTCTGGAATCACCTTCAGTAA
CLNT1_0111_F10.b : GGTGCAGCCTGGGGGGTCTCTGAGACTCTCCTGTGTCGGCTCTGGACTCACCTTCAGTAA
CLNT1_0061_C11.b : GGTGCAGCCTGGGGGGTCTCTCAGACTCTCCTGTGTCGGCTCTGGGTTCACCTTCAGTAA
CLNT1_0062_C11.b : GGTGCAGCCTGGGGGGTCTCTCAGACTCTCCTGTGTCGGCTCTGGGTTCACCTTCAGTAA
CLNT1_0066_B05.b : GGTGCAGCCTGGGGGGTCTCTCAGACTCTCCTGTGTCGGCTCTGGGTTCACCTTCAGTAA
20110601C-000396 : ATATTCGGTGAGGTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGCTGGCATATAT
---------+---------+---------+---------+---------+---------+ 276
CLNT1_0115_B08.b : ATATTCGGTGAGGTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGCTGGCATATAT
CLNT1_0111_F10.b : ATATTCGGTGAGGTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGCTGGCATATAT
CLNT1_0061_C11.b : ATATTCGGTGAGGTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGCTGGCATATAT
CLNT1_0062_C11.b : ATATTCGGTGAGGTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGCTGGCATATAT
CLNT1_0066_B05.b : ATATTCGATGAGGTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGCTGGCATATAT
20110601C-000396 : TGATAGTAGTGGTGGTAGCACCTACTACGCAGACTCTGTGGAGGGCCGATTCACCATCTC
---------+---------+---------+---------+---------+---------+ 336
CLNT1_0115_B08.b : TGATAGTGGTGGTGGTAGCACCTACTACGCAGACTCTGTGGAGGGCCGATTCACCATCTC
CLNT1_0111_F10.b : TGATAGTAGTGGTGGTAGCACCTACTACGCAGACTCTGTGGAGGGCCGATTCACCATCTC
CLNT1_0061_C11.b : TGATAGTAGTGGTGGTAGCACCTACTACGCAGACTCTGTGGAGGGCCGATTCACCATCTC
CLNT1_0062_C11.b : TGATAGTAGTGGTGGTAGCACCTACTACGCAGACTCTGTGGAGGGCCGATTCACCATCTC
CLNT1_0066_B05.b : TGATAGTAGTGGTGGTAGCACCTACTACGCAGACTCTGTGGAGGGCCGATTCACCATCTC
20110601C-000396 : CAGAGACAACTCCCAGAACACGGCCTATTTGCAAATGAACAGCCTGAGAACCGAAGACAC
---------+---------+---------+---------+---------+---------+ 396
CLNT1_0115_B08.b : CAGAGACAACTCCCAGAACACGGCCTATTTGCAAATGAACAGCCTGAGAACCGAAGACAC
CLNT1_0111_F10.b : CAGAGACAACTCCCAGAACACGGCCTATTTGCAAATGAACAGCCTGAGAACCGAAGACAC
CLNT1_0061_C11.b : CAGAGACAACTCCCAGAACACGGCCTATTTGCAAATGAACAGCCTGAGAACCGAAGACAC
CLNT1_0062_C11.b : CAGAGACAACTCCCAGAACACGGCCTATTTGCAAATGAACAGCCTGAGAACCGAAGACAC
CLNT1_0066_B05.b : CAGAGACAACTCCCAGAACACGGCCTATTTGCAAATGAACAGCCTGAGAACCGAAGACAC
20110601C-000396 : GGCCCGCTATCTCTGTTTCGGGGGCGGGAGTTTCTGGGGCCCAGGCGTTGAAGTCGTCGT
---------+---------+---------+---------+---------+---------+ 456
CLNT1_0115_B08.b : GGCCCGCTATCTCTGTTTCGGGGGCGGGAGTTTCTGGGGCCCAGGCGTTGAAGTCGTCGT
CLNT1_0111_F10.b : GGCCCGCTATCTCTGTTTCGGGGGCGGGAGTTTCTGGGGCCCAGGCGTTGAAGTCGTCGT
CLNT1_0061_C11.b : GGCCCGCTATCTCTGTTTCGGGGGCGGGAGTTTCTGGGGCCCAGGCGTTGAAGTCGTCGT
CLNT1_0062_C11.b : GGCCCGCTATCTCTGTTTCGGGGGCGGGAGTTTCTGGGGCCCAGGCGTTGAAGTCGTCGT
CLNT1_0066_B05.b : GGCCCGCTATCTCTGTTTCGGGGGCGGGAGTTTCTGGGGCCCAGGCGTTGAAGTCGTCGT
20110601C-000396 : GTCCTCAGTGTCTGAAATCAGCCCCAAAATCTTCCCACTGACTCTGGGGAGCAGCGAGCC
---------+---------+---------+---------+---------+---------+ 516
CLNT1_0115_B08.b : GTCCTCAGTGTCTGAAATCAGCCCCAAAATCTTCCCACTGACTCTGGGGAGCAGCGAGCC
CLNT1_0111_F10.b : GTCCTCAGTGTCTGAAATCAGCCCCAAAATCTTCCCACTGACTCTGGGGAGCAGCGAGCC
CLNT1_0061_C11.b : GTCCTCAGTGTCTGAAATCAGCCCCAAAATCTTCCCACTGACTCTGGGGAGCAGCGAGCC
CLNT1_0062_C11.b : GTCCTCAGTGTCTGAAATCAGCCCCAAAATCTTCCCACTGACTCTGGGGAGCAGCGAGCC
CLNT1_0066_B05.b : GTCCTCAGTGTCTGAAATCAGCCCCAAAATCTTCCCACTGACTCTGGGGAGCAGCGAGCC
20110601C-000396 : TGCCGGATATGTGGTCATCGCCTGCCTGGTCCGGGACTTCTTCCCGTCAGAGCCCCTGAC
---------+---------+---------+---------+---------+---------+ 576
CLNT1_0115_B08.b : TGCCGGATATGTGGTCATCGCCTGCCTGGTCCGGGACTTCTTCCCGTCAGAGCCCCTGAC
CLNT1_0111_F10.b : TGCCGGATATGTGGTCATCGCCTGCCTGGTCCGGGACTTCTTCCCGTCAGAGCCCCTGAC
CLNT1_0061_C11.b : TGCCGGATATGTGGTCATCGCCTGCCTGGTCCGGGACTTCTTCCCGTCAGAGCCCCTGAC
CLNT1_0062_C11.b : TGCCGGATATGTGGTCATCGCCTGCCTGGTCCGGGACTTCTTCCCGTCAGAGCCCCTGAC
CLNT1_0066_B05.b : TGCCGGATATGTGGTCATCGCCTGCCTGGTCCGGGACTTCTTCCCGTCAGAGCCCCTGAC
20110601C-000396 : AGTAACCTGGAGCCCTAGTCGCGAGGGCGTTATTGTCAGAAACTTCCCCCCTGCGCAGGC
---------+---------+---------+---------+---------+---------+ 636
CLNT1_0115_B08.b : AGTAACCTGGAGCCCTAGTCGCGAGGGCGTTATTGTCAGAAATTTCCCCCCTGCGCAGGC
CLNT1_0111_F10.b : AGTAACCTGGAGCCCTAGTCGCGAGGGCGTTATTGTCAGAAACTTCCCCCCTGCGCAGGC
CLNT1_0061_C11.b : AGTAACCTGGAGCCCTAGTCGCGAGGGCGTTATTGTCAGAAACTTCCCCCCTGCGCAGGC
CLNT1_0062_C11.b : AGTAACCTGGAGCCCTAGTCGCGAGGGCGTTATTGTCAGAAACTTCCCCCCTGCGCAGGC
CLNT1_0066_B05.b : AGTAACCTGGAGCCCTAGTCGCGAGGGCGTTATTGTCAGAAACTTCCCCCCTGCGCAGGC
20110601C-000396 : CGGGGGCCTGTACACCATGAGCAGCCAGCTGACCTTGCCAGTCGAGCAGTGCCCAGCCGA
---------+---------+---------+---------+---------+---------+ 696
CLNT1_0115_B08.b : CGGGGGCCTGTACACCATGAGCAGCCAGCTGACCTTGCCAGTCGAGCAGTGCCCAGCCGA
CLNT1_0111_F10.b : CGGGGGCCTGTACACCATGAGCAGCCAGCTGACCTTGCCAGTCGAGCAGTGCCCAGCCGA
CLNT1_0061_C11.b : CGGGGGCCTGTACACCATGAGCAGCCAGCTGACCTTGCCAGTCGAGCAGTGCCCAGCCGA
CLNT1_0062_C11.b : CGGGGGCCTGTACACCATGAGCAGCCAGCTGACCTTGCCAGTCGAGCAGTGCCCAGCCGA
CLNT1_0066_B05.b : CGGGGGCCTGTACACCATGAGCAGCCAGCTGACCTTGCCAGTCGAGCAGTGCCCAGCCGA
20110601C-000396 : TCAGATCCTGAAGTGCCAAGTGCAGCACCTCTCCAAATCCAGCCAGTCCGTGAACGTGCC
---------+---------+---------+---------+---------+---------+ 756
CLNT1_0115_B08.b : TCAGATCCTGAAGTGCCAAGTGCAGCACCTCTCCAAATCCAGCCAGTCCGTGAACGTGCC
CLNT1_0111_F10.b : TCAGATCCTGAAGTGCCAAGTGCAGCACCTCTCCAAATCCAGCCAGTCCGTGAACGTGCC
CLNT1_0061_C11.b : TCAGATCCTGAAGTGCCAAGTGCAGCACCTCTCCAAATCCAGCCAGTCCGTGAACGTGCC
CLNT1_0062_C11.b : TCAGATCCTGAAGTGCCAAGTGCAGCACCTCTCCAAATCCAGCCAGTCCGTGAACGTGCC
CLNT1_0066_B05.b : TCAGATCCTGAAGTGCCAAGTGCAGCACCTCTCCAAATCCAGCCAGTCCGTGAACGTGCC
20110601C-000396 : CTGCAAAGTTTTACCTTCAGATCCATGTCCCCAGTGCTGCAAGCCCAGCCTGTCCCTGCA
---------+---------+---------+---------+---------+---------+ 816
CLNT1_0115_B08.b : CTGCAAAGTTTTACCTTCAGATCCCATGTCCCAGTGCTGCAAGCCCCAGCTGTCCCTGCA
CLNT1_0111_F10.b : CTGCAAAGTTTTACCTTCAGAATCATGTCCCCAGTGCTGNCAGCCCAGCCTGTCCCTGCA
CLNT1_0061_C11.b : CTGCAAAGTTTTACCTTCAGATCCATGTCCCCAGTGCTGNCAGCCCAGCCTGTCCCTGCA
CLNT1_0062_C11.b : CTGCAAAGTTTTACCTTCAGATCCATGTCCCCAGTGCTGCAAGCCCAGCCTGTCCCTGCA
CLNT1_0066_B05.b : CTGCAAAGTTTTACCTTCAGATCCATGTCCCCAGTGCTGCAAGCCCAGCCTGTCCCTGCA
20110601C-000396 : GCCACCAGCCCTTGCAGACCTGCTCCTGGGCTCCAATGCCAGCCCCCACTGCACACTCAG
---------+---------+---------+---------+---------+---------+ 876
CLNT1_0115_B08.b : GCCACCACCCCTTGCAAACCTGCTCCTGGGCTCCAATGCCAGCTTCACCTGCACACTCAG
CLNT1_0111_F10.b : GCCACCAGCCCTTGCAGACCTGCTCCTGGGGCTCCATGCCAGCCCTCACTGCACACTCAG
CLNT1_0061_C11.b : GCCACCAGCCCTTGCAGACCTGCTCCTGGGCTCCNNATGCAGCCCTCACTGCACACTCAG
CLNT1_0062_C11.b : GCCACCAGCCCTTGCAGAACTGCTCCTGGGCTCCNNATGCAGCCCTCACTGCACACTCAG
CLNT1_0066_B05.b : GCCACCAGCCCTTGCAGACCTGCTCCTGGGCTCCAATGCCAGCCTCACCTGCACACTCAG
20110601C-000396 : TGGCCTGAAAAAATCCGAAGGTGTCAGCTTCACCTGGCAGCCCTCAGGTGGGAAAGGAAT
---------+---------+---------+---------+---------+---------+ 936
CLNT1_0115_B08.b : TGCCCTGAAAAAATC*GAAGGTGTCAGC*TCACCTGGCAccctcaaggtgggaagatccg
CLNT1_0111_F10.b : TGGCCTGAAA*AATCCGAAGGTGTCAGCTTCA*CTGGCAGCCCTCAGtgggaaggatgnn
CLNT1_0061_C11.b : TGGCCTGAAAAAATCCGAGGGTGTCAGCTTCACCTGGCAGCCCTCANGTGGGGAAGGATG
CLNT1_0062_C11.b : TGGCCTGAAAA*ATCCGAAGGTGTCAGCTTCACCTGGCAGCCCTCANGTGGGAAAAGGAT
CLNT1_0066_B05.b : TGGCCTGAAAAAATCCGAGGGTGTCAGCTCCANCTGGCAGCCCTCAGGTGGGAAAGATGC
20110601C-000396 : CCGTCAGGCGTCCCCCAGCGTGATTCCTGTGGTTGCTA......................
---------+---------+---------+---------+---------+---------+ 974
CLNT1_0115_B08.b : tccaggcctccccccgcctgattccgtggctgcaaagcgtgtccacattctgcaggtgtg
CLNT1_0111_F10.b : cgtcagcgtcccccagcctgatccttgtgctgctacggcgtgtcagcatctggccagctg
CLNT1_0061_C11.b : CCGTCCnaggcgtccccccacgcgtgattcctgttgctgctacnagcgtgtccagcatcc
CLNT1_0062_C11.b : GCGTCAGGCGTCCCCCAgcgtgatcctgtggctgctaaagcgtgtcagcatccggcaggc
CLNT1_0066_B05.b : CGTCCAGGCGTCCCCCAGCGTGATTCCTGTGGTTGCTAagcgggtccgcatcctgcaggc
20110601C-000396 : ............................................................
---------+---------+---------+---------+---------+---------+ 974
CLNT1_0115_B08.b : cttatcctggaacaaagaaaaaatttcctgccccccccattttatttaagaagggctaac
CLNT1_0111_F10.b : tgctgatccttgaaccaggagaaaattctcttgcccgcccccaatctgaattaaaaggcg
CLNT1_0061_C11.b : tggcaagnttgtgctgaccttggnaacaaaggaaaaaattcctcctggacggccgcccaa
CLNT1_0062_C11.b : tgtgctgatccttggacaaagaaaaaaatttcctggaccgccccccctcgaatttaaaaa
CLNT1_0066_B05.b : tgggctgatccttggacaagggaaaaaattctcttgccccccccccatcttaatgtaaag
20110601C-000396 : ............................................................
---------+---------+---------+---------+---------+---------+ 974
CLNT1_0115_B08.b : cgcccctcccaacccaatggaaatttccgcccagtcccttttgccccccttgaagatggc
CLNT1_0111_F10.b : ctacgccccttcccaacccagtgaaaagttcgggcccgttccctgttccccccttcgaga
CLNT1_0061_C11.b : tcttaagtttaaaaaggggcgtaaccgcccctttcccaaaccaaagggaaacctttcggg
CLNT1_0062_C11.b : gggtttacccccctttccaaacccaaggaaaagtttcgccccattcccctgttgcccccc
CLNT1_0066_B05.b : aggcttaccgcccccttcccaacccaaggtgaaagtttcggcccagttcacctgtggccc
20110601C-000396 : ............................................................
---------+---------+---------+---------+---------+---------+ 974
CLNT1_0115_B08.b : cttataactaaacaaaatcctgggggggtttccccaaatttttttgatgttgaggggcaa
CLNT1_0111_F10.b : acggccctaataccgggaataaatccggggcggggttccccaaattccgtgtcatgttaa
CLNT1_0061_C11.b : ccccagttccccttttcccccccccttgaaaaaaatggccccaaaaaatggtggaaccaa
CLNT1_0062_C11.b : cttgaagaaaggccccaagaaagtggaaaaaaaactgggggggggttccccaagagattt
CLNT1_0066_B05.b : cccctcgaagaaatggcctcaaagacggtgaacctaaatgccgggggggggttcccccca
20110601C-000396 : ............................................................
---------+---------+---------+---------+---------+---------+ 974
CLNT1_0115_B08.b : atccccaaaaaactttgggaactcaaattgggggcccccctcgttaactgtttgggacaa
CLNT1_0111_F10.b : ggggcaaactcccctaaatcccttgggatactggaagtgcggtcccccaccgaacggtgc
CLNT1_0061_C11.b : aatcccgggggggggttttccccccaaatttgtgttgtaatttttagagggccaaaatcc
CLNT1_0062_C11.b : tggttatattctagggggcgaaaatcccccaaaaaacccttgggatctccaaaagggcgc
CLNT1_0066_B05.b : gagatttttggtcaattttaaagggccaaaaatccccggaaaaaccctttgaaaatccaa
20110601C-000396 : ............................................................
---------+---------+---------+---------+---------+---------+ 974
CLNT1_0115_B08.b : agaaaagaactctctgtgggggggcccctgctataaaaaacgggagcccatttgttgggg
CLNT1_0111_F10.b : gtgaacaaatgaaaggaacctcttggggggaagcccgtttcaaaaaagcgggaaccaatg
CLNT1_0061_C11.b : cccccaaaaaaccctggggaactcccccaacggccggc
CLNT1_0062_C11.b : ccccc
CLNT1_0066_B05.b : aaaggggggggttcccccaaccgtaaagtgtggttggaacaaaaaaaaaagaaaaccttt
20110601C-000396 : ............................................................
---------+---------+---------+---------+---------+---------+ 974
CLNT1_0115_B08.b : gagtgctccccccccccaacctaaaaagaggggggggtataaccccctatttgcttgtta
CLNT1_0111_F10.b : ttgtgggaaaccttccccccacgtaaaaaaaaccccagaatctcttattaatttttt
CLNT1_0061_C11.b :
CLNT1_0062_C11.b :
CLNT1_0066_B05.b : cgtgggggagagggcgccgttctcaaaaaaaccggggggaaacacgagggg
20110601C-000396 : ............................................................
---------+---------+---------+---------+---------+---------+ 974
CLNT1_0115_B08.b : tta
CLNT1_0111_F10.b :
CLNT1_0061_C11.b :
CLNT1_0062_C11.b :
CLNT1_0066_B05.b :