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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-000637

Length: 860

Sequence [FASTA format sequence]
CTTCTAAGGC ACCACCCCGC TGGGGAGCTG CAGCAGAACC AGCTCTCTCC TCGCTGTGTC
CCTCAGCCGC CCGGTTATGC CCGGGAAGGT TGGGACCCAG TCACAGCAGC TGAGGCGATG
TGGTGGGCTC CCGTCCTCTT ACACTCCTTC CTGAGCTCTC TGCAGGAGAC CCGAGCCCGA
ACACATTCTC TGCAATATTT CTACTTGGCC ATGTCTGAGG CTGCACCAGG TGTCCCTGCA
TTTACTGCTT TCGGAGTCAT AGACGACCAG CCCTTCATTC GCTATGACAA TGAGGAGATG
AAGGCAAAAT CTTGTGTTCA GTGGTTGAGG GAGGAGCCAA GTTACTTCAA TGATGAGACC
AAGATCTTCA CCAGTCGGAT GAAGATCTTC CGCTTAAATC TGAGGAACGT GCAGCGATAT
TACAACCAAA CCATGGAGAA TGGGCTGAAC AAAGCCCTGG AGCACAAGCA AACAGGTAGG
GGCCTGAGGG GAAGCGGTGC TCACCGAGTC GCACCGATCC TCAGGGGAGA AAGGCTCTCT
CAACAAGTGT TCCTGTAGAA TCAGACTGGC GCTGGAGAAC GTGTGCAAGG TATCACTTGA
GAGTGAGAGA AGACCTAGTC TGGTCACTAT GGGGTAGGGT CTGTTTGACA TGAATTAATA
ACTAATAAAT AGATTAATTA AGCAGTTTGG GTCATGGACG TATGTATCTT TTGGGTGCTG
CGGGCAGGGA TCCAGAAAAG TACGACCTGG TGTTTGTTTT CAAAGAGCTT ACAATTCTTA
CGGTTCGTAT GATGAGCAGA CTCACACTTC TGTGAAAACT TTATTGACCC TTTGGTGCAG
ACCCAGAAAT GTCAAAGACC


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinHLA-EHLA class I histocompatibility antigen, alpha chain E precursor [Homo sapiens]. 72.45e-13O
Contig/Assembly ProteinHLA-Bmajor histocompatibility complex, class I, B precursor [Homo sapiens]. 71.21e-12O
Contig/Assembly ProteinHLA-GHLA class I histocompatibility antigen, alpha chain G precursor [Homo sapiens]. 68.29e-12O
Contig/Assembly ProteinHLA-AHLA class I histocompatibility antigen, A-1 alpha chain precursor [Homo sapiens]. 67.81e-11O
Contig/Assembly ProteinHLA-CHLA class I histocompatibility antigen, Cw-1 alpha chain precursor [Homo sapiens]. 672e-11O
Contig/Assembly ProteinHLA-CHLA class I histocompatibility antigen, Cw-1 alpha chain precursor [Homo sapiens]. 672e-11O
Contig/Assembly ProteinHLA-AHLA class I histocompatibility antigen, A-1 alpha chain precursor [Homo sapiens]. 65.56e-11O
Contig/Assembly ProteinMR1major histocompatibility complex class I-related gene protein isoform 3 precursor [Homo sapiens]. 62.84e-10O
Contig/Assembly ProteinMR1major histocompatibility complex class I-related gene protein isoform 4 precursor [Homo sapiens]. 62.84e-10O
Contig/Assembly ProteinMR1major histocompatibility complex class I-related gene protein isoform 2 precursor [Homo sapiens]. 62.84e-10O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinH2-T24histocompatibility 2, T region locus 24 [Mus musculus]. 1187e-27O
Contig/Assembly ProteinLOC100045444PREDICTED: HLA class I histocompatibility antigen, B-7 alpha chain-like [Mus musculus]. 1163e-26O
Contig/Assembly ProteinH2-Q5histocompatibility 2, Q region locus 5 [Mus musculus]. 794e-15O
Contig/Assembly ProteinGm7030predicted gene 7030 [Mus musculus]. 75.55e-14O
Contig/Assembly ProteinH2-Q7H-2 class I histocompatibility antigen, Q7 alpha chain isoform 3 precursor [Mus musculus]. 74.31e-13O
Contig/Assembly ProteinLOC100044020PREDICTED: h-2 class I histocompatibility antigen, Q7 alpha chain-like isoform 1 [Mus musculus]. 74.31e-13O
Contig/Assembly ProteinLOC100044020PREDICTED: h-2 class I histocompatibility antigen, Q7 alpha chain-like isoform 4 [Mus musculus]. 74.31e-13O
Contig/Assembly ProteinLOC100044020PREDICTED: h-2 class I histocompatibility antigen, Q7 alpha chain-like isoform 2 [Mus musculus]. 74.31e-13O
Contig/Assembly ProteinH2-Q7H-2 class I histocompatibility antigen, Q7 alpha chain isoform 2 precursor [Mus musculus]. 74.31e-13O
Contig/Assembly ProteinH2-Q7H-2 class I histocompatibility antigen, Q7 alpha chain isoform 1 precursor [Mus musculus]. 74.31e-13O


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinDLA-12MHC class I DLA-12 [Canis lupus familiaris]. 68.21e-11O
Contig/Assembly Proteindla88MHC class I DLA-88 [Canis lupus familiaris]. 66.63e-11O
Contig/Assembly ProteinDLA-64MHC class I DLA-64 [Canis lupus familiaris]. 60.52e-09O
Contig/Assembly ProteinAZGP1PREDICTED: similar to Zinc-alpha-2-glycoprotein precursor (Zn-alpha-2-glycoprotein) (Zn-alpha-2-GP) [Canis familiaris]. 57.81e-08O
Contig/Assembly ProteinDLA-79PREDICTED: MHC class Ib [Canis familiaris]. 51.69e-07O
Contig/Assembly ProteinDLA-79MHC class Ib [Canis lupus familiaris]. 51.69e-07O


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC512672major histocompatibility complex, class I [Bos taurus]. 1902e-48O
Contig/Assembly ProteinJSP.1MHC Class I JSP.1 [Bos taurus]. 75.56e-14O
Contig/Assembly ProteinBOLAMHC class I heavy chain isoform 1 [Bos taurus]. 73.62e-13O
Contig/Assembly ProteinBoLAmajor histocompatibility complex, class I, A [Bos taurus]. 72.45e-13O
Contig/Assembly ProteinLOC100125916hypothetical protein LOC100125916 [Bos taurus]. 71.68e-13O
Contig/Assembly ProteinBOLA-NC1non-classical MHC class I antigen [Bos taurus]. 69.73e-12O
Contig/Assembly ProteinBOLA-Amajor histocompatibility complex, class I, A [Bos taurus]. 69.34e-12O
Contig/Assembly ProteinLOC790811hypothetical protein LOC790811 [Bos taurus]. 68.67e-12O
Contig/Assembly ProteinLOC616942major histocompatibility complex, class I, A-like [Bos taurus]. 672e-11O
Contig/Assembly ProteinBOLAMHC class I heavy chain [Bos taurus]. 672e-11O


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC100626428PREDICTED: class I histocompatibility antigen, Gogo-C*0101/C*0102 alpha chain-like [Sus scrofa]. 73.61e-13O
Contig/Assembly ProteinSLA-5MHC class I antigen 5 [Sus scrofa]. 69.72e-12O
Contig/Assembly ProteinLOC100622689PREDICTED: patr class I histocompatibility antigen, A-126 alpha chain-like [Sus scrofa]. 68.93e-12O
Contig/Assembly ProteinSLA-3MHC class I antigen 3 [Sus scrofa]. 65.54e-11O
Contig/Assembly ProteinSLA-8MHC class I antigen 8 [Sus scrofa]. 63.51e-10O
Contig/Assembly ProteinLOC100513601PREDICTED: patr class I histocompatibility antigen, A-126 alpha chain-like [Sus scrofa]. 624e-10O
Contig/Assembly ProteinLOC100621614PREDICTED: major histocompatibility complex class I-related gene protein-like isoform 2 [Sus scrofa]. 60.89e-10O
Contig/Assembly ProteinSLA-1MHC class I antigen 1 [Sus scrofa]. 60.89e-10O
Contig/Assembly ProteinLOC100511275PREDICTED: major histocompatibility complex class I-related gene protein-like isoform 2 [Sus scrofa]. 60.89e-10O
Contig/Assembly ProteinLOC100511275PREDICTED: major histocompatibility complex class I-related gene protein-like isoform 1 [Sus scrofa]. 60.89e-10O


Assembly Members: 8      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
ADR010032A05ADR01_0032_A05.bDB784293 
BMWN10069F12BMWN1_0069_F12.bHX209811 
CLNT10094A04CLNT1_0094_A04.bFS663838 
ITT010015D05ITT01_0015_D05.bBW977351 AK344925
MLN010104E03MLN01_0104_E03.bCJ016074 
OVRT10077C11OVRT1_0077_C11.bFS692672 
THY010121A06THY01_0121_A06.bBP159960 
UTR010095A04UTR01_0095_A04.bCJ038723 

  

SNP: 1      TOP
Loc.AlleleIndividualsFreq.TypeAA Change
WesternMeishan
211A500.625WNATG/M
G300.375GTG/V


Alignment:      TOP

20110601C-000637 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
ITT01_0015_D05.b : nnggataaacaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MLN01_0104_E03.b : nggttgtgatatgacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ADR01_0032_A05.b : nnnaaatgatatxxxxxxxxxxxxxxxxxxxxxx
CLNT1_0094_A04.b : nccctgttnnnnnggcctacatcagcgnacgxxxxxxxxxxxx
BMWN1_0069_F12.b : tttttggatggtacgaggxxxxxxxxxx
OVRT1_0077_C11.b : nggatccctattgctgcacgxxxxxxxxx
THY01_0121_A06.b : tcaa
UTR01_0095_A04.b : nnnnggctagtgacttnacxxxxxx
20110601C-000637 : ...........CTTCTAAGGCACCACCCCGCTGGGGAGCTGCAGCAGAACCAGCTCTCTC
---------+---------+---------+---------+---------+---------+ 49
ITT01_0015_D05.b : xxxxxxxxxxxCTTCTAAGGCACCCCTTCGCTGGGGAGCTGCAGCAGAACCAGCTCTTTC
MLN01_0104_E03.b : xxxxxxxxxxxxxxxxxxGGCACCACCCCGCTGGGGAGCTGCAGCAGAACCAGCTCTCTC
ADR01_0032_A05.b : xxxxxxxxxxxxxxxxxxxxxxxxxCCCCGCTGGGGAGCTGCAGCAGAACCAGCTCTCTC
CLNT1_0094_A04.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxtAGCAGAACCAGCTCTCTC
BMWN1_0069_F12.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxgAGAACCAGCTCTCTC
OVRT1_0077_C11.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGAACCAGCTCTCTC
THY01_0121_A06.b : aacagtggxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxtggagcaAACCAGCTCTCTC
UTR01_0095_A04.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTCTC
20110601C-000637 : CTCGCTGTGTCCCTCAGCCGCCCGGTTATGCCCGGGAAGGTTGGGACCCAGTCACAGCAG
---------+---------+---------+---------+---------+---------+ 109
ITT01_0015_D05.b : CTCGCTGTGTCCCTCAGCCGCCCGGTTATGCCCGGGAAGGTTGGGACCCAGTCACAGCAG
MLN01_0104_E03.b : CTCGCTGTGTCCCTCAGCCGCCCGGTTATGCCCGGGAAGGTTGGGACCCAGTCACAGCAG
ADR01_0032_A05.b : CTCGCTGTGTCCCTCAGCCGCCCGGTTATGCCCGGGAAGGTTGGGACCCAGTCACAGCAG
CLNT1_0094_A04.b : CTCGCTGTGTCCCTCAGCCGCCCGGTTATGCCCGGGAAGGTTGGGACCCAGTCACAGCAG
BMWN1_0069_F12.b : CTCGCTGTGTCCCTCAGCCGTCCGGTTATGCCCGGGAAGGCTGGGACCCAGTCACAGCAG
OVRT1_0077_C11.b : CTCGCTGTGTCCCTCAGCCGCCCGGTTATGCCCGGGAAGGTTGGGACCCAGTCACAGCAG
THY01_0121_A06.b : CTCGCTGTGTC*CTCAGCCGCCCGGTTATGCCCGGGAAGGTTGGGACCCAGTCACAGCAG
UTR01_0095_A04.b : CTCGCTGTGTCCCTCAGCCGTCCGGTTATGCCCGGGAAGGTTGGGACCCAGTCACAGCAG
20110601C-000637 : CTGAGGCGATGTGGTGGGCTCCCGTCCTCTTACACTCCTTCCTGAGCTCTCTGCAGGAGA
---------+---------+---------+---------+---------+---------+ 169
ITT01_0015_D05.b : CTGAGGCGATGTGGTGGGCTCCCGTCCTCTTACACTCCTTCCTGAGCTCTCTGCAGGAGA
MLN01_0104_E03.b : CTGAGGCGATGTGGTGGGCTCCCGTCCTCTTACACTCCTTCCTGAGCTCTCTGCAGGAGA
ADR01_0032_A05.b : CTGAGGCGATGTGGTGGGCTCCCGTCCTCTTACACTCCTTCCTGAGCTCTCTGCAGGAGA
CLNT1_0094_A04.b : CTGAGGCGATGTGGTGGGCTCCCGTCCTCTTACACTCCTTCCTGAGCTCTCTGCAGGAGA
BMWN1_0069_F12.b : CTGAGGCGATGTGGTGGGCTCCCGTCCTCTTACACTCCTTCCTGAGCTCTCTGCAGGAGA
OVRT1_0077_C11.b : CTGAGGCGATGTGGTGGGCTCCCGTCCTCTTACACTCCTTCCTGAGCTCTCTGCAGGAGA
THY01_0121_A06.b : CTGAGGCGATGTGGTGGGCTCCCGTCCTCTTACACTCCTTCCTGAGCTCTCTGCAGGAGA
UTR01_0095_A04.b : CTGAGGCGATGTGGTGGGCTCCCGTCCTCTTACACTCCTTCCTGAGCTCTCTGCAGGAGA
20110601C-000637 : CCCGAGCCCGAACACATTCTCTGCAATATTTCTACTTGGCCATGTCTGAGGCTGCACCAG
---------+---------+---------+---------+---------+---------+ 229
ITT01_0015_D05.b : CCCGAGCCCGAACACATTCTCTGCAATATTTCTACTTGGCCGTGTCTGAGGCTGCACCAG
MLN01_0104_E03.b : CCCGAGCCCGAACACATTCTCTGCAATATTTCTACTTGGCCGTGTCTGAGGCTGCACCAG
ADR01_0032_A05.b : CCCGAGCCCGAACACATTCTCTGCAATATTTCTACTTGGCCGTGTCTGAGGCTGCACCAG
CLNT1_0094_A04.b : CCCGAGCCCGAACACATTCTCTGCAATATTTCTACTTGGCCATGTCTGAGGCTGCACCAG
BMWN1_0069_F12.b : CCCGAGCCCGAACACATTCTCTGCAATATTTCTACTTGGCCATGTCTGAGGCTGCACCAG
OVRT1_0077_C11.b : CCCGAGCCCGAACACATTCTCTGCAATATTTCTACTTGGCCATGTCTGAGGCTGCACCAG
THY01_0121_A06.b : CCCGAGCCCGAACACATTCTCTGCAATATTTCTACTTGGCCATGTCTGAGGCTGCACCAG
UTR01_0095_A04.b : CCCGAGCCCGAACACATTCTCTGCAATATTTCTACTTGGCCATGTCTGAGGCTGCACCAG
20110601C-000637 : GTGTCCCTGCATTTACTGCTTTCGGAGTCATAGACGACCAGCCCTTCATTCGCTATGACA
---------+---------+---------+---------+---------+---------+ 289
ITT01_0015_D05.b : GTGTCCCTGCATTTACTGCTTTCGGAGTCATAGACGACCAGCCCTTCATTCGCTATGACA
MLN01_0104_E03.b : GTGTCCCTGCATTTACTGCTTTCGGAGTCATAGACGACCAGCCCTTCATTCGCTATGACA
ADR01_0032_A05.b : GTGTCCCTGCATTTACTGCTTTCGGAGTCATAGACGACCAGCCCTTCATTCGCTATGACA
CLNT1_0094_A04.b : GTGTCCCTGCATTTACTGCTTTCGGAGTCATAGACGACCAGCCCTTCATTCGCTATGACA
BMWN1_0069_F12.b : GTGTCCCTGCATTTACTGCTTTCGGAGTCATAGACGACCAGCCCTTCATTCGCTATGACA
OVRT1_0077_C11.b : GTGTCCCTGCATTTACTGCTTTCGGAGTCATAGACGACCAGCCCTTCATTCGCTATGACA
THY01_0121_A06.b : GTGTCCCTGCATTTACTGCTTTCGGAGTCATAGACGACCAGCCCTTCATTCGCTATGACA
UTR01_0095_A04.b : GTGTCCCTGCATTTACTGCTTTCGGAGTCATAGACGACCAGCCCTTCATTCGCTATGACA
20110601C-000637 : ATGAGGAGATGAAGGCAAAATCTTGTGTTCAGTGGTTGAGGGAGGAGCCAAGTTACTTCA
---------+---------+---------+---------+---------+---------+ 349
ITT01_0015_D05.b : ATGAGGAGATGAAGGCAAAATCTTGTGTTCAGTGGTTGAGGGAGGAGCCAAGTTACTTCA
MLN01_0104_E03.b : ATGAGGAGATGAAGGCAAAATCTTGTGTTCAGTGGTTGAGGGAGGAGCCAAGTTACTTCA
ADR01_0032_A05.b : ATGAGGAGATGAAGGCAAAATCTTGTGTTCAGTGGTTGAGGGAGGAGCCAAGTTACTTCA
CLNT1_0094_A04.b : ATGAGGAGATGAAGGCAAAATCTTGTGTTCAGTGGTTGAGGGAGGAGCCAAGTTACTTCA
BMWN1_0069_F12.b : ATGAGGAGATGAAGGCAAAATCTTGTGTTCAGTGGTTGAGGGAGGAGCCAAGTTACTTCA
OVRT1_0077_C11.b : ATGAGGAGATGAAGGCAAAATCTTGTGTTCAGTGGTTGAGGGAGGAGCCAAGTTACTTCA
THY01_0121_A06.b : ATGAGGAGATGAAGGCAAAATCTTGTGTTCAGTGGTTGAGGGAGGAGCCAAGTTACTTCA
UTR01_0095_A04.b : ATGAGGAGATGAAGGCAAAATCTTGTGTTCAGTGGTTGAGGGAGGAGCCAAGTTACTTCA
20110601C-000637 : ATGATGAGACCAAGATCTTCACCAGTCGGATGAAGATCTTCCGCTTAAATCTGAGGAACG
---------+---------+---------+---------+---------+---------+ 409
ITT01_0015_D05.b : ATGATGAGACCAAGATCTTCACCAGTCGGATGAAGATCTTCCGCTTAAATCTGAGGAACG
MLN01_0104_E03.b : ATGATGAGACCAAGATCTTCACCAGTCGGATGAAGATCTTCCGCTTAAATCTGAGGAACG
ADR01_0032_A05.b : ATGATGAGACCAAGATCTTCACCAGTCGGATGAAGATCTTCCGCTTAAATCTGAGGAACG
CLNT1_0094_A04.b : ATGATGAGACCAAGATCTTCACCAGTCGGATGAAGATCTTCCGCTTAAATCTGAGGAACG
BMWN1_0069_F12.b : ATGATGAGACCAAGATCTTCACCAGTCGGATGAAGATCTTCCGCTTAAATCTGAGGAACG
OVRT1_0077_C11.b : ATGATGAGACCAAGATCTTCACCAGTCGGATGAAGATCTTCCGCTTAAATCTGAGGAACG
THY01_0121_A06.b : ATGATGAGACCAAGATCTTCACCAGTCGGATGAAGATCTTCCGCTTAAATCTGAGGAACG
UTR01_0095_A04.b : ATGATGAGACCAAGATCTTCACCAGTCGGATGAAGATCTTCCGCTTAAATCTGAGGAACG
20110601C-000637 : TGCAGCGATATTACAACCAAACCATGGAGAATGGGCTGAACAAAGCCCTGGAGCACAAGC
---------+---------+---------+---------+---------+---------+ 469
ITT01_0015_D05.b : TGCAGCGATATTACAACCAAACCATGGAGAATGGGCTGAACAAAGCCCTGGAGCACAAGC
MLN01_0104_E03.b : TGCAGCGATATTACAACCAAACCATGGAGAATGGGCTGAACAAAGCCCTGGAGCACAAGC
ADR01_0032_A05.b : TGCAGCGATATTACAACCAAACCATGGAGAATGGGCTGAACAAAGCCCTGGAGCACAAGC
CLNT1_0094_A04.b : TGCAGCGATATTACAACCAAACCATGGAGAATGGGCTGAACAAAGCCCTGGAGCACAAGC
BMWN1_0069_F12.b : TGCAGCGATATTACAACCAAACCATGGAGAATGGGCTGAACAAAGCCCTGGAGCACAAGC
OVRT1_0077_C11.b : TGCAGCGATATTACAACCAAACCATGGAGAATGGGCTGAACAAAGCCCTGGAGCACAAGC
THY01_0121_A06.b : TGCAGCGACATTACAACCAAACCATGGAGGATGGGCTGAACAAAGCCCTGGAGCACAAGC
UTR01_0095_A04.b : TGCAGCGATATTACAACCAAACCATGGAGAATGGGCTGAACAAAGCCCTGGAGCACAAGC
20110601C-000637 : AAACAGGTAGGGGCCTGAGGGGAAGCGGTGCTCACCGAGTCGCACCGATCCTCAGGGGAG
---------+---------+---------+---------+---------+---------+ 529
ITT01_0015_D05.b : AAACAGGTAGGGGCCTGAGGGGAAGCGGTGCTCACCGAGTCGCACCGATCCTCAGGGGAG
MLN01_0104_E03.b : AAACAGGTAGGGGCCTGAGGGGAAGCGGTGCTCACCGAGTCGCACCGATCCTCAGGGGAG
ADR01_0032_A05.b : AAACAGGTAGGGGCCTGAGGGGAAGCGGTGCTCACCGAGTCGCACCGATCCTCAGGGGAG
CLNT1_0094_A04.b : AAACAGGTAGGGGCCTGAGGGGAAGCGGTGCTCACCGAGTCGCACCGATCCTCAGGGGAG
BMWN1_0069_F12.b : AAACAGGTAGGGGCCTGAGGGGAAGCGGTGCTCACCGAGTCGCACCGATCCTCAGGGGAG
OVRT1_0077_C11.b : AAACAGGTAGGGGCCTGAGGGGAAGCGGTGCTCACTGAGTCGCACCGATCCTCAGGGGAG
THY01_0121_A06.b : AAACAGGTAGGGGCCTGAGGGGAAGCGGTGCTCACCGAGTANCACCGATCCTCAGGGGAG
UTR01_0095_A04.b : AAACAGGTAGGGGCCTGAGGGGAAGCGGTGCTCACCGAGTCGCACCGATCCTCAGGGGAG
20110601C-000637 : AAAGGCTCTCTCAACAAGTGTTCCTGTAGAATCAGACTGGCGCTGGAGAACGTGTGCAAG
---------+---------+---------+---------+---------+---------+ 589
ITT01_0015_D05.b : AAAGGCTCTCTCAACAAGTGTTCCTGTAGAATCAGACTGGCGCTGGAGAACGTGTGCAAG
MLN01_0104_E03.b : AAAGGCTCTCTCAACAAGTGTTCCTGTAGAATCAGACTGGCGCTGGAGAACGTGTGCAAG
ADR01_0032_A05.b : AAAGGCTCTCTCAACAAGTGTTCCTGTAGAATCAGACTGGCGCTGGAGAACGTGTGCAAG
CLNT1_0094_A04.b : AAAGGCTCTCTCAACAAGTGTTCCTGTAGAATCAGACTGGCGCTGGAGAACGTGTGCAAG
BMWN1_0069_F12.b : AAAGGCTCTCTCAACAAGTGTTCCTGTAGAATCAGACTGGCGCTGGAGAACGTGTGCAAG
OVRT1_0077_C11.b : AAAGGCTCTCTCAACAAGTGTTCCTGTAGAATCAGACTGGCGCTGGAGAACGTGTGCAAG
THY01_0121_A06.b : AAAGGCTCTCTCCACAgtgttcctgtaggatcgacggcgccggaaaagtgttcaaggatt
UTR01_0095_A04.b : AAAGGCTCTCTCAACAAGTGTTCCTGTAGAATCAGACTGGCGCTGGAGAACGTGTGCAAG
20110601C-000637 : GTATCACTTGAGAGTGAGAGAAGACCTAGTCTGGTCACTATGGGGTAG*GGTCTGTTTGA
---------+---------+---------+---------+---------+---------+ 648
ITT01_0015_D05.b : GTATCACTTGAGAGTGAGAGAAGACCTAGTCTGGTCACTATGGGGTAG*GGTCTGTTTGA
MLN01_0104_E03.b : GTATCACTTGAGAGTGAGAGAAGACCTAGTCTGGTCACTATGGGGTAG*GGTCTGTTTGA
ADR01_0032_A05.b : GTATCACTTGAGAGTGAGAGAAGACCTAGTCTGGTCACTATGGGGTAG*GGTCTGTTTGA
CLNT1_0094_A04.b : GTATCACTTGAGAGTGAGAGAAGACCTAGTCTGGTCACTATGGGGTAG*GGTCTGTTTGA
BMWN1_0069_F12.b : GTATCACTTGAGAGTGAGAGAAGACCTAGTCTGGTCACTATGGGGTAGGGGTGTGTTTGA
OVRT1_0077_C11.b : GTATCACTTGAGAGTGAGAGAAGACCTAGTCTGGTCACTATGGGGTAG*GGTCTGTTTGA
THY01_0121_A06.b : ccttaaataaaaaaaaccaatctggtccttgggggggggttgtt
UTR01_0095_A04.b : GTATCACTTGAGAGTGAGAGAAGACCTAGTCTGGTCACTATGGGGTAG*GGTCTGTTTGA
20110601C-000637 : CATGAATTAATAACTAATAAATAGATTAATTAAGCAGTTTGGGTCATGGACGTATGTATC
---------+---------+---------+---------+---------+---------+ 708
ITT01_0015_D05.b : CATGAATTAATAACTAATAAATAGATTAATTAAGCAGTTTGGGTCATGGACGTATGTATC
MLN01_0104_E03.b : CATGAATTAATAACTAATAAATAGATTAATTAAGCAGTTTGGGTCATGGACGTATGTATC
ADR01_0032_A05.b : CATGAATTAATAACTAATAAATAGATTAATTAAGCAGTTTGGGTCATGGACGTATGTATC
CLNT1_0094_A04.b : CATGAATTAATAACTAATAAATAGATTAATTAAGCAGTTTGGGTCATGGACGTATGTATC
BMWN1_0069_F12.b : CATNGATTNNATACTAATAAATAGATTtaattagcaaaaaaaaaaaaaaaa
OVRT1_0077_C11.b : CATGAATTAATAACTAATAAATAGATTAATTAAGCAGTTTGGGTCATGGACGTATGTATC
THY01_0121_A06.b :
UTR01_0095_A04.b : CATGAATTAATAACTAATAAATAGATTAATTAAGCAGTTTGGGTCATGGACGTATGTATC
20110601C-000637 : TTTTGGGTGCTGCGGGCAGGGATCCAGAAAAGTACGACCTGGTGTTTGTTTTCAAAGAGC
---------+---------+---------+---------+---------+---------+ 768
ITT01_0015_D05.b : TTTTGGGTGCTGCGGGCAGGGATCCAGAAAAGTACGACCTGGTGTTTGTTTTCAAAGAGC
MLN01_0104_E03.b : TTTTGGGTGCTGCGGGCAGGGATCCAGAAAAGTACGACCTGGTGTTTGTTTTCAAAGAGC
ADR01_0032_A05.b : TTTTGGGTGCTGCGGGCAGGGATCCAGAAAAGTACGACCTGGTGTTTGTTTTCAAAGAGC
CLNT1_0094_A04.b : TTTTGGGTGCTGCGGGCAGGGATCCAGAAAAGTACGACCTGGTGTTTGTTTTCAAAGAGC
BMWN1_0069_F12.b :
OVRT1_0077_C11.b : TTTTGGGTGCTGCGGGCAGGGATCCAGAAAAGTACGACCTGGTGTTTGTTTTCAAAGAGC
THY01_0121_A06.b :
UTR01_0095_A04.b : TTTTGGGTGCTGCGGGCAGGGATCCAGAAAAGTACGACCTGGTGTTTGTTTTCAAAGAGC
20110601C-000637 : TTACAATTCTTACGGTTCGTATGATGAGCAGACTCACACTTCTGTGAAAACTTTATTGAC
---------+---------+---------+---------+---------+---------+ 828
ITT01_0015_D05.b : TTACAATTCTTACGGTTCGTATGATGAGCAGACTCACACTTCTGTGAAAACTTTATTGAC
MLN01_0104_E03.b : TTACAATTCTTACGGTTCGTATGATGAGCAGACTCACACTTCTGTGAAAACTTTATTGAC
ADR01_0032_A05.b : TTACAATTCTTACNGTTCGTATGATGAGCAGACTCACACTTCTGTGAAAACTTTATTGAC
CLNT1_0094_A04.b : TTANCATTCTTACGGTTCGTATGATGAGCAGACTCACACTTCTGTGAAAACTTTATTGAC
BMWN1_0069_F12.b :
OVRT1_0077_C11.b : TTACAATTCTTACGGTTCGTATGATGAGCAGACTCACACTTCTGTGAAAACTTTATTGAC
THY01_0121_A06.b :
UTR01_0095_A04.b : TTACNATTCTTACAGTTCGTATGATGAGCAGACTCACACTTCTGTGAAAACTTTATTGAC
20110601C-000637 : CCTTTGGTGCAGACCCAGAAATGTCAAAGACC............................
---------+---------+---------+---------+---------+---------+ 860
ITT01_0015_D05.b : CCTTTggtgcagacccagaatgtcaaagaccggagcctctttaatgccaaatgagaagca
MLN01_0104_E03.b : CCTTTGGTGCCAACCCAGAAATGTCAAaaaccggagcctcccttaaatgccaaatgagaa
ADR01_0032_A05.b : CCTTTggtgcagacccagaaatgtncaagaccgagcctcttttaatgcaaatgagaagca
CLNT1_0094_A04.b : CCTTTGGTGCAGACCCAGAAATGTCAAAGACgggagcctcttaaatgccaaatgaagagc
BMWN1_0069_F12.b :
OVRT1_0077_C11.b : CCTTTGGTGCAGACCCAGAAATGTCAAAGAccggagcctcctaaatgccaatgagaagca
THY01_0121_A06.b :
UTR01_0095_A04.b : CCTTTGGTGCAGACCCAGAAATGTCAAAGACCcggagcctccttaaatgccaaatgagaa
20110601C-000637 : ............................................................
---------+---------+---------+---------+---------+---------+ 860
ITT01_0015_D05.b : gataagtagtttatgaggttcatggatgagacaccccagtggtcgcagcttccatgatga
MLN01_0104_E03.b : agccgataaattgttttatgagggttctgggatgagaacacccaaatggtcgcaaccttc
ADR01_0032_A05.b : gaataatagtttatgaggtacatggatgagacacccnagtggtcgcagctcatgaaatga
CLNT1_0094_A04.b : agataaatagtttatgaagttcatggatgagacccccaagtgttcgcagcttcatgaatg
BMWN1_0069_F12.b :
OVRT1_0077_C11.b : gataaatagtttatgaagttcatggatgaaacacccaagtggtcgcacctccatgaatga
THY01_0121_A06.b :
UTR01_0095_A04.b : gcagaataatagtttatgaggttcatggatgagacaccccagtggtcgcagcctcatgaa
20110601C-000637 : ............................................................
---------+---------+---------+---------+---------+---------+ 860
ITT01_0015_D05.b : agtggaactgcctgtgnancctgatggatgtgctttactttagtgtctgagaaaattaaa
MLN01_0104_E03.b : atgaattaaaatggaactgggctgtggaagccctgatggagtggcctttacttatagggt
ADR01_0032_A05.b : gtggaactggctgtgnagcctgatggatgtgcattacctaagtgtctgaagaaaataagg
CLNT1_0094_A04.b : aagtggaactggctgtggacctgatggatgtgcattacttaggtgtctgaaaaaaataaa
BMWN1_0069_F12.b :
OVRT1_0077_C11.b : agtggaactggctgtggagcctgatggaggtgcattactttagtggccgaagaaataaaa
THY01_0121_A06.b :
UTR01_0095_A04.b : tgaattggaactggctgtggaacctgatggattgcattaacttggtgtctgaagaaaata
20110601C-000637 : ............................................................
---------+---------+---------+---------+---------+---------+ 860
ITT01_0015_D05.b : ggcgttctatgccctaaaaccaaaaaaaaaaaaaaaaaaaaaaaaaaggccacatgtgcc
MLN01_0104_E03.b : ctggaaaaaaataaaaggcggtctattgcccctaaaaggccctatataaaatattaaata
ADR01_0032_A05.b : gcgtctatgccctaaaaagcaaaaaaaaaaaaaaaaaggattaattaaaaaaatttgggg
CLNT1_0094_A04.b : agtgttctatgcctaaaaagcaaaaaaaaaaaaaaaaaaaggccactttgcctcaactgc
BMWN1_0069_F12.b :
OVRT1_0077_C11.b : ggtgttctatgccctaaaacaaaaaaaaaaggaataatttaaaaaatttggtgttctaaa
THY01_0121_A06.b :
UTR01_0095_A04.b : aaggggttctatgccctaaaaaaaaaaaaaaaaaaggccccctggtgctctaaacttnnn
20110601C-000637 : ............................................................
---------+---------+---------+---------+---------+---------+ 860
ITT01_0015_D05.b : cagctccagtgcggcccctctaatttcctcgaggggccaagttaacgtaccagcttctgt
MLN01_0104_E03.b : atataaaagggcccatgttgctccaacttgcaaggtcccggcccccccttaaattatccc
ADR01_0032_A05.b : ttcgaagcaataacaggcgtgggggggggatcacggtgatgggttccggaaaaaacgaag
CLNT1_0094_A04.b : aggtccggcccctaaattatctaaaaaaaaaacttccaaccttcccctgaaccgaaactt
BMWN1_0069_F12.b :
OVRT1_0077_C11.b : aataacaaagggtgggggggattcatgtattgggtccggggaaaaacgaatttatacctt
THY01_0121_A06.b :
UTR01_0095_A04.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
20110601C-000637 : ............................................................
---------+---------+---------+---------+---------+---------+ 860
ITT01_0015_D05.b : acaggggtccctaaggggcgattaaactagccggccttctttacctctgaccggaaacgc
MLN01_0104_E03.b : ctctgaggggcccaaagtataaccgtaatcccgttttttcttgggaaaaagtgggccccc
ADR01_0032_A05.b : tttatcttttccagtaaggggcctggacattaacccctttaaaacattttggaggggctt
CLNT1_0094_A04.b : aaaagaagcgcatttggtgttaaattgttattgcgccttaagggtcacattaaccaaact
BMWN1_0069_F12.b :
OVRT1_0077_C11.b : tcaataagggccccttgacctttacccctttaaaacaattttaaaggcctttaaaaaatt
THY01_0121_A06.b :
UTR01_0095_A04.b : nnnnnnnnnnnnnnnnnnnnnnnn
20110601C-000637 : ............................................................
---------+---------+---------+---------+---------+---------+ 860
ITT01_0015_D05.b : ccctggattttgaagaactacttggggggcttttggaaacccccaataagcccgggaaaa
MLN01_0104_E03.b : attatggagcccttatataaaccttaggcc
ADR01_0032_A05.b : gaacactcttgggttaacctgtggaggtattttgagcggattggggggcccctttttatt
CLNT1_0094_A04.b : ttccaatttcccaaaaaccttttttccggcttcaggggggttgcccacccacaggtttct
BMWN1_0069_F12.b :
OVRT1_0077_C11.b : cagggttaaccggggaggtctaatggacgggaattgggcgcgccccttttaaattacact
THY01_0121_A06.b :
UTR01_0095_A04.b :
20110601C-000637 : ............................................................
---------+---------+---------+---------+---------+---------+ 860
ITT01_0015_D05.b : aattagggtaagggtaaccccccctcgccgaattcctcgaatataaattccgcccgcttt
MLN01_0104_E03.b :
ADR01_0032_A05.b : ttcctcccggaggtgtttaagggtttggggtctccccccccctcgtccgtttgag
CLNT1_0094_A04.b : aaatgtggggcccgcgtaaaacccaaataattccccgttcctccaaaaaaccggcgcggg
BMWN1_0069_F12.b :
OVRT1_0077_C11.b : ccagaaatgtgttaaaaagtttagggattacacgggccccatgtcccttcttaaagc
THY01_0121_A06.b :
UTR01_0095_A04.b :
20110601C-000637 : ............................................................
---------+---------+---------+---------+---------+---------+ 860
ITT01_0015_D05.b : tgtggttataccccggttgcgccccccggtaaaaaccatttgta
MLN01_0104_E03.b :
ADR01_0032_A05.b :
CLNT1_0094_A04.b : gtgtggggg
BMWN1_0069_F12.b :
OVRT1_0077_C11.b :
THY01_0121_A06.b :
UTR01_0095_A04.b :