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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-002102

Length: 1,034

Sequence [FASTA format sequence]
AAAGCGGCTC TGATGCCGGG GGCCTCCGCG GAAGAGGGAA GATGGCGCTT GACGGGCCTG
AGCAGATGGA GCTGGAAGAG GGGAAGGCAG GCAGTGGACT CCGCCAGTAT TATCTGTCCA
AGATTGAAGA ACTCCAGCTG ATTGTGAATG ACAAGAGCCA GAATCTCCGC AGGCTGCAAG
CACAGAGGAA TGAGCTTAAT GCAAAAGTTC GCCTGTTGCG AGAGGAGCTA CAGCTACTGC
AAGAACAGGG CTCCTATGTG GGGGAAGTAG TCCGGGCCAT GGACAAGAAA AAAGTGTTGG
TTAAGGTGCA TCCCGAGGGC AAGTTTGTCG TAGACGTGGA CAAGAACATC GACATCAATG
ATGTGACACC CAACTGCCGG GTGGCTCTCA GAAATGACAG CTACACTTTG CACAAGATCC
TGCCCAACAA GGTAGACCCA CTGGTGTCAC TGATGATGGT GGAGAAAGTG CCAGATTCAA
CTTACGAGAT GATTGGTGGA CTGGACAAGC AGATCAAGGA GATCAAAGAA GTGATCGAGC
TGCCCGTGAA GCATCCTGAG CTCTTTGAAG CGCTGGGCAT TGCACAGCCC AAGGGAGTGC
TGCTATACGG ACCCCCAGGC ACTGGGAAGA CACTGCTGGC CCGAGCTGTG GCCCATCATA
CAGACTGCAC CTTTATTCGC GTCTCTGGCT CTGAGCTGGT ACAGAAATTC ATTGGGGAAG
GGGCAAGGAT GGTGAGGGAG CTGTTTGTCA TGGCCCGAGA ACACGCTCCA TCTATCATCT
TCATGGACGA AATCGACTCC ATTGGCTCCT CGCGGCTGGA AAGGGGCTCT GGAGGGGACA
GTGAAGTCCA GCGCACGATG CTGGAGCTGC TCAACCAGCT GGACGGCTTC GAGGCCACCA
AAAATATCAA GGTTATCATG GCCACTAATA GGATTGACAT CCTGGACTCG GCGCTGCTCC
GCCCAGGGCG CATCGACAGA AAAATTGATT TCCACCCCCC CACGAGAAGG CCCGGCTGGA
CATTTTGAAG ATCC


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinPSMC526S protease regulatory subunit 8 isoform 1 [Homo sapiens]. 560e-162O
Contig/Assembly ProteinPSMC526S protease regulatory subunit 8 isoform 2 [Homo sapiens]. 543e-157O
Contig/Assembly ProteinPSMC126S protease regulatory subunit 4 [Homo sapiens]. 2741e-73
Contig/Assembly ProteinPSMC226S protease regulatory subunit 7 isoform 1 [Homo sapiens]. 2662e-71
Contig/Assembly ProteinPSMC626S protease regulatory subunit 10B [Homo sapiens]. 2604e-70O
Contig/Assembly ProteinPSMC426S protease regulatory subunit 6B isoform 1 [Homo sapiens]. 2562e-68
Contig/Assembly ProteinPSMC426S protease regulatory subunit 6B isoform 2 [Homo sapiens]. 2533e-67O
Contig/Assembly ProteinPSMC326S protease regulatory subunit 6A [Homo sapiens]. 2463e-65
Contig/Assembly ProteinAFG3L2AFG3-like protein 2 [Homo sapiens]. 1649e-41
Contig/Assembly ProteinSPATA5spermatogenesis-associated protein 5 [Homo sapiens]. 1649e-41


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinPsmc526S protease regulatory subunit 8 [Mus musculus]. 560e-162O
Contig/Assembly ProteinPsmc126S protease regulatory subunit 4 [Mus musculus]. 2749e-74
Contig/Assembly ProteinPsmc226S protease regulatory subunit 7 [Mus musculus]. 2661e-71
Contig/Assembly ProteinPsmc626S protease regulatory subunit 10B [Mus musculus]. 2603e-70O
Contig/Assembly ProteinPsmc426S protease regulatory subunit 6B [Mus musculus]. 2562e-68
Contig/Assembly ProteinPsmc326S protease regulatory subunit 6A [Mus musculus]. 2463e-65
Contig/Assembly ProteinSpata5spermatogenesis-associated protein 5 isoform 2 [Mus musculus]. 1693e-42
Contig/Assembly ProteinSpata5spermatogenesis-associated protein 5 isoform 1 [Mus musculus]. 1693e-42
Contig/Assembly ProteinAfg3l2AFG3-like protein 2 [Mus musculus]. 1648e-41
Contig/Assembly ProteinVcptransitional endoplasmic reticulum ATPase [Mus musculus]. 1625e-40


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC480478PREDICTED: similar to for proteasomal ATPase (SUG1) isoform 1 [Canis familiaris]. 560e-162O
Contig/Assembly ProteinLOC480478PREDICTED: similar to for proteasomal ATPase (SUG1) isoform 3 [Canis familiaris]. 439e-126O
Contig/Assembly ProteinLOC475896PREDICTED: similar to proteasome (prosome, macropain) 26S subunit, ATPase 2 [Canis familiaris]. 2662e-71
Contig/Assembly ProteinLOC478703PREDICTED: similar to peptidase (prosome, macropain) 26S subunit, ATPase 1 isoform 2 [Canis familiaris]. 2611e-69
Contig/Assembly ProteinLOC478522PREDICTED: similar to proteasome 26S ATPase subunit 6 [Canis familiaris]. 2604e-70O
Contig/Assembly ProteinLOC476459PREDICTED: similar to 26S protease regulatory subunit 6B (MIP224) (MB67 interacting protein) (TAT-binding protein-7) (TBP-7) isoform 1 [Canis familiaris]. 2562e-68
Contig/Assembly ProteinLOC476459PREDICTED: similar to 26S protease regulatory subunit 6B (MIP224) (MB67 interacting protein) (TAT-binding protein-7) (TBP-7) isoform 4 [Canis familiaris]. 2549e-68
Contig/Assembly ProteinLOC476459PREDICTED: similar to proteasome 26S ATPase subunit 4 isoform 2 isoform 2 [Canis familiaris]. 2533e-67O
Contig/Assembly ProteinLOC476459PREDICTED: similar to 26S protease regulatory subunit 6B (MIP224) (MB67 interacting protein) (TAT-binding protein-7) (TBP-7) isoform 3 [Canis familiaris]. 2471e-65
Contig/Assembly ProteinLOC607287PREDICTED: similar to 26S protease regulatory subunit 6A (TAT-binding protein 1) (TBP-1) (Spermatogenic cell/sperm-associated TAT-binding protein homolog SATA) [Canis familiaris]. 2462e-65O


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinPSMC526S protease regulatory subunit 8 [Bos taurus]. 560e-162O
Contig/Assembly ProteinPSMC126S protease regulatory subunit 4 [Bos taurus]. 2741e-73
Contig/Assembly ProteinPSMC226S protease regulatory subunit 7 [Bos taurus]. 2662e-71
Contig/Assembly ProteinPSMC626S protease regulatory subunit 10B [Bos taurus]. 2604e-70O
Contig/Assembly ProteinPSMC426S protease regulatory subunit 6B [Bos taurus]. 2562e-68
Contig/Assembly ProteinPSMC326S protease regulatory subunit 6A [Bos taurus]. 2463e-65
Contig/Assembly ProteinPSMC3PREDICTED: proteasome (prosome, macropain) 26S subunit, ATPase, 3 [Bos taurus]. 2371e-62
Contig/Assembly ProteinLOC100297992PREDICTED: spermatogenesis associated 5-like, partial [Bos taurus]. 1711e-42
Contig/Assembly ProteinAFG3L2AFG3-like protein 2 [Bos taurus]. 1642e-40
Contig/Assembly ProteinVCPtransitional endoplasmic reticulum ATPase [Bos taurus]. 1626e-40


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinTBP1026S protease regulatory subunit 8 [Sus scrofa]. 560e-162O
Contig/Assembly ProteinPSMC1PREDICTED: 26S protease regulatory subunit 4 isoform 2 [Sus scrofa]. 2747e-74O
Contig/Assembly ProteinPSMC1PREDICTED: 26S protease regulatory subunit 4 isoform 1 [Sus scrofa]. 2747e-74
Contig/Assembly ProteinLOC100514865PREDICTED: 26S protease regulatory subunit 7-like [Sus scrofa]. 2661e-71
Contig/Assembly ProteinLOC100624151PREDICTED: 26S protease regulatory subunit 7-like [Sus scrofa]. 2661e-71
Contig/Assembly ProteinPSMC6PREDICTED: 26S protease regulatory subunit 10B [Sus scrofa]. 2602e-70O
Contig/Assembly ProteinLOC100624452PREDICTED: LOW QUALITY PROTEIN: 26S protease regulatory subunit 6B-like [Sus scrofa]. 2562e-68
Contig/Assembly ProteinPSMC3PREDICTED: 26S protease regulatory subunit 6A [Sus scrofa]. 2462e-65
Contig/Assembly ProteinSPATA5spermatogenesis-associated protein 5 [Sus scrofa]. 1671e-41
Contig/Assembly ProteinVCPtransitional endoplasmic reticulum ATPase [Sus scrofa]. 1608e-40


Assembly Members: 5      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
PCT010012A04PCT01_0012_A04.bFS695426 
PCT010036H03PCT01_0036_H03.bFS697064 
SKNB10022H10SKNB1_0022_H10.b  
SKNB10058G01SKNB1_0058_G01.bDB803492 
SKNB10069H10SKNB1_0069_H10.b  

  

SNPs: 2      TOP
Loc.AlleleIndividualsFreq.TypeAA Change
WesternMeishan
374C300.600WSAAC/N
T200.400AAT/N
398C300.600WSGAC/D
T200.400GAT/D


Alignment:      TOP

20110601C-002102 : ................................AAAGCGGCTCTGATGCCGGGGGCCTCCG
---------+---------+---------+---------+---------+---------+ 28
PCT01_0012_A04.b : nnngggctttnnnnnnncctgcggtggctcggAAAGCGGCTCTGATGCCGGGGGCCTCCG
SKNB1_0058_G01.b : nnngggaannnnnnanaatgcgttggctaggacAAGCGGCTCTGATGCCGGGGGCCTCCG
SKNB1_0069_H10.b : nnnnngggaaannnnnnnnaacctcgttggctcggctctAGCCGGGGGCCTCC*
PCT01_0036_H03.b : nnngggggagaaannanncctgcgttggctcagcggctctgaGCCGGGGGCCTCCG
SKNB1_0022_H10.b : nnnggggaannnnnacccaa
20110601C-002102 : CGGAAGAGGGAAGATGGCGCTTGACGGGCCTGAGCAGATGGAGCTGGAAGAGGGGAAGGC
---------+---------+---------+---------+---------+---------+ 88
PCT01_0012_A04.b : CGGAAGAGGGAAGATGGCGCTTGACGGGCCTGAGCAGATGGAGCTGGAAGAGGGGAAGGC
SKNB1_0058_G01.b : CGGAAGAGGGAAGATGGCGCTTGACGGGCCTGAGCAGATGGAGCTGGAAGAGGGGAAGGC
SKNB1_0069_H10.b : CGGAAGAGGGAAGATGGCGCTTGACGGGCCTGAGCAGATGGAGCTGGAAGAGGGGAAGGC
PCT01_0036_H03.b : CGGAAGAGGGAAGATGGCGCTTGACGGGCCTGAGCAGATGGAGCTGGAAGAGGGGAAGGC
SKNB1_0022_H10.b : cgttggctctggagaGGCGCTTGACGGGCCTGAGCAGATGGAGCTGGAAGAGGGGAACGC
20110601C-002102 : AGGCAGTGGACTCCGCCAGTATTATCTGTCCAAGATTGAAGAACTCCAGCTGATTGTGAA
---------+---------+---------+---------+---------+---------+ 148
PCT01_0012_A04.b : AGGCAGTGGACTCCGCCAGTATTATCTGTCCAAGATTGAAGAACTCCAGCTGATTGTGAA
SKNB1_0058_G01.b : AGGCAGTGGACTCCGCCAGTATTATCTGTCCAAGATTGAAGAACTCCAGCTGATTGTGAA
SKNB1_0069_H10.b : AGGCAGTGGACTCCGCCAGTATTATCTGTCCAAGATTGAAGAACTCCAGCTGATTGTGAA
PCT01_0036_H03.b : AGGCAGTGGACTCCGCCAGTATTATCTGTCCAAGATGGAAGAACTCCAGCTGATTGTGAA
SKNB1_0022_H10.b : ATTCAGTGGACTCCGCCAGTATTATCTGTCCAAGATTGAACAACTCCAGCTGATTGTGAA
20110601C-002102 : TGACAAGAGCCAGAATCTCCGCAGGCTGCAAGCACAGAGGAATGAGCTTAATGCAAAAGT
---------+---------+---------+---------+---------+---------+ 208
PCT01_0012_A04.b : TGACAAGAGCCAGAATCTCCGCAGGCTGCAAGCACAGAGGAATGAGCTTAATGCAAAAGT
SKNB1_0058_G01.b : TGACAAGAGCCAGAATCTCCGCAGGCTGCAAGCACAGAGGAATGAGCTTAATGCAAAAGT
SKNB1_0069_H10.b : TGACAAGAGCCAGAATCTCCGCAGGCTGCAAGCACAGAGGAATGAGCTTAATGCAAAAGT
PCT01_0036_H03.b : TGACAAGAGCCAGAATCTCCGCAGGCTGCAAGCACAGAGGAATGAGCTTAATGCAAAAGT
SKNB1_0022_H10.b : TGACAAGAGCCAGAATCTCCGCAGGCTGCAAGCACAGAGGAATGAGCTTAATGCAAAAGT
20110601C-002102 : TCGCCTGTTGCGAGAGGAGCTACAGCTACTGCAAGAACAGGGCTCCTATGTGGGGGAAGT
---------+---------+---------+---------+---------+---------+ 268
PCT01_0012_A04.b : TCGCCTGTTGCGAGAGGAGCTACAGCTACTGCAAGAACAGGGCTCCTATGTGGGGGAAGT
SKNB1_0058_G01.b : TCGCCTGTTGCGAGAGGAGCTACAGCTACTGCAAGAACAGGGCTCCTATGTGGGGGAAGT
SKNB1_0069_H10.b : TCGCCTGTTGCGAGAGGAGCTACAGCTACTGCAAGAACAGGGCTCCTATGTGGGGGAAGT
PCT01_0036_H03.b : TCGCCTGTTGCGAGAGGAGCTACAGCTACTGCAAGAACAGGGCTCCTATGTGGGGGAAGT
SKNB1_0022_H10.b : TCGCCTGTTGCGAGAGGAGCTACAGCTACTGCAAGAACAGGGCTCCTATGTGGGGGAAGT
20110601C-002102 : AGTCCGGGCCATGGACAAGAAAAAAGTGTTGGTTAAGGTGCATCCCGAGGGCAAGTTTGT
---------+---------+---------+---------+---------+---------+ 328
PCT01_0012_A04.b : AGTCCGGGCCATGGACAAGAAAAAAGTGTTGGTTAAGGTGCATCCCGAGGGCAAGTTTGT
SKNB1_0058_G01.b : AGTCCGGGCCATGGACAAGAAAAAAGTGTTGGTTAAGGTGCATCCCGAGGGCAAGTTTGT
SKNB1_0069_H10.b : AGTCCGGGCCATGGACAAGAAAAAAGTGTTGGTTAAGGTGCATCCCGAGGGCAAGTTTGT
PCT01_0036_H03.b : AGTCCGGGCCATGGACAAGAAAAAAGTGTTGGTTAAGGTGCATCCCGAGGGCAAGTTTGT
SKNB1_0022_H10.b : AGTCCGGGCCATGGACAAGAAAAAAGTGTTGGTTAAGGTGCATCCCGAGGGCAAGTTTGT
20110601C-002102 : CGTAGACGTGGACAAGAACATCGACATCAATGATGTGACACCCAACTGCCGGGTGGCTCT
---------+---------+---------+---------+---------+---------+ 388
PCT01_0012_A04.b : CGTAGACGTGGACAAGAACATCGACATCAATGATGTGACACCCAATTGCCGGGTGGCTCT
SKNB1_0058_G01.b : CGTAGACGTGGACAAGAACATCGACATCAATGATGTGACACCCAACTGCCGGGTGGCTCT
SKNB1_0069_H10.b : CGTAGACGTGGACAAGAACATCGACATCAATGATGTGACACCCAACTGCCGGGTGGCTCT
PCT01_0036_H03.b : CGTAGACGTGGACAAGAACATCGACATCAATGATGTGACACCCAATTGCCGGGTGGCTCT
SKNB1_0022_H10.b : CGTAGACGTGGACAAGAACATCGACATCAATGATGTGACACCCAACTGCCGGGTGGCTCT
20110601C-002102 : CAGAAATGACAGCTACACTTTGCACAAGATCCTGCCCAACAAGGTAGACCCACTGGTGTC
---------+---------+---------+---------+---------+---------+ 448
PCT01_0012_A04.b : CAGAAATGATAGCTACACTTTGCACAAGATCCTGCCCAACAAGGTAGACCCACTGGTGTC
SKNB1_0058_G01.b : CAGAAATGACAGCTACACTTTGCACAAGATCCTGCCCAACAAGGTAGACCCACTGGTGTC
SKNB1_0069_H10.b : CAGAAATGACAGCTACACTTTGCACAAGATCCTGCCCAACAAGGTAGACCCACTGGTGTC
PCT01_0036_H03.b : CAGAAATGATAGCTACACTTTGCACAAGATCCTGCCCAACAAGGTAGACCCACTGGTGTC
SKNB1_0022_H10.b : CAGAAATGACAGCTACACTTTGCACAAGATCCTGCCCAACAAGGTAGACCCACTGGTGTC
20110601C-002102 : ACTGATGATGGTGGAGAAAGTGCCAGATTCAACTTACGAGATGATTGGTGGACTGGACAA
---------+---------+---------+---------+---------+---------+ 508
PCT01_0012_A04.b : ACTGATGATGGTGGAGAAAGTGCCAGATTCAACTTACGAGATGATTGGTGGACTGGACAA
SKNB1_0058_G01.b : ACTGATGATGGTGGAGAAAGTGCCAGATTCAACTTACGAGATGATTGGTGGACTGGACAA
SKNB1_0069_H10.b : ACTGATGATGGTGGAGAAAGTGCCAGATTCAACTTACGAGATGATTGGTGGACTGGACAA
PCT01_0036_H03.b : ACTGATGATGGTGGAGAAAGTGCCAGATTCAACTTACGAGATGATTGGTGGACTGGACAA
SKNB1_0022_H10.b : ACTGATGATGGTGGAGAAAGTGCCAGATTCAACTTACGAGATGATTGGTGGACTGGACAA
20110601C-002102 : GCAGATCAAGGAGATCAAAGAAGTGATCGAGCTGCCCGTGAAGCATCCTGAGCTCTTTGA
---------+---------+---------+---------+---------+---------+ 568
PCT01_0012_A04.b : GCAGATCAAGGAGATCAAAGAAGTGATCGAGCTGCCCGTGAAGCATCCTGAGCTCTTTGA
SKNB1_0058_G01.b : GCAGATCAAGGAGATCAAAGAAGTGATCGAGCTGCCCGTGAAGCATCCTGAGCTCTTTGA
SKNB1_0069_H10.b : GCAGATCAAGGAGATCAAAGAAGTGATCGAGCTGCCCGTGAAGCATCCTGAGCTCTTTGA
PCT01_0036_H03.b : GCAGATCAAGGAGATCAAAGAAGTGATCGAGCTGCCCGTGAAGCATCCTGAGCTCTTTGA
SKNB1_0022_H10.b : GCAGATCAAGGAGATCAAAGAAGTGATCGAGCTGCCCGTGAAGCATCCTGAGCTCTTTGA
20110601C-002102 : AGCGCTGGGCATTGCACAGCCCAAGGGAGTGCTGCTATACGGACCCCCAGGCACTGGGAA
---------+---------+---------+---------+---------+---------+ 628
PCT01_0012_A04.b : AGCGCTGGGCATTGCACAGCCCAAGGGAGTGCTGCTATACGGACCCCCAGGCACTGGGAA
SKNB1_0058_G01.b : AGCGCTGGGCATTGCACAGCCCAAGGGAGTGCTGCTATACGGACCCCCAGGCACTGGGAA
SKNB1_0069_H10.b : AGCGCTGGGCATTGCACAGCCCAAGGGAGTGCTGCTATACGGACCCCCAGGCACTGGGAA
PCT01_0036_H03.b : AGCGCTGGGCATTGCACAGCCCAAGGGAGTGCTGCTATACGGACCCCCAGGCACTGGGGA
SKNB1_0022_H10.b : AGCGCTGGGCATTGCACAGCCCAAGGGAGTGCTGCTATACGGACCCCCAGGCACTGGGAA
20110601C-002102 : GACACTGCTGGCCCGAGCTGTGGCCCATCATACAGACTGCACCTTTATTCGCGTCTCTGG
---------+---------+---------+---------+---------+---------+ 688
PCT01_0012_A04.b : GACACTGCTGGCCCGAGCTGTGGCCCATCATACAGACTGCACCTTTATTCGCGTCTCTGG
SKNB1_0058_G01.b : GACACTGCTGGCCCGAGCTGTGGCCCATCATACAGACTGCACCTTTATTCGCGTCTCTGG
SKNB1_0069_H10.b : GACACTGCTGGCCCGAGCTGTGGCCCATCATACAGACTGCACCTTTATTCGCGTCTCTGG
PCT01_0036_H03.b : GACACTGCTGGCCCGAGCTGTGGCCCATCATACAGACTGCACCTTTATTCGCGTCTCTGG
SKNB1_0022_H10.b : GACACTGCTGGCCCGAGCTGTGGCCCATCATACAGACTGCACCTTTATTCGCGTCTCTGG
20110601C-002102 : CTCTGAGCTGGTACAGAAA*TTCATTGGGGAAGGGGCAAGGATGGTGA*GGGAGCTGTTT
---------+---------+---------+---------+---------+---------+ 746
PCT01_0012_A04.b : CTCTGAGCTGGTACAGAAA*TTCATTGGGGAAGGGGCAAGGATGGTGA*GGGAGCTGTTT
SKNB1_0058_G01.b : CTCTGAGCTGGTACAGAAAATTCATTGGGGAAGGGGCAAGGATGGTGANGGNAGCTGTTT
SKNB1_0069_H10.b : CTCTGAGCTGGTACAGAAA*TTCATTGGGGAAGGGGCAAGGATGGTGAGGGGAGCTGTTT
PCT01_0036_H03.b : CTCTGAGCTGGTACAGAAA*TTCATTGGGGAAGGGGCAAGGATGGTGA*GGAAGCTGTTT
SKNB1_0022_H10.b : CTCTGAGCTGGTACAGAAA*TTCATTGGGGAAGGGGCAAGGATGGTGA*GGGAGCTGTTT
20110601C-002102 : GTCATGGCCCGAGAACACGCTCCATCTATCATCTTCATGGACGAAATCGACTCCATTGGC
---------+---------+---------+---------+---------+---------+ 806
PCT01_0012_A04.b : GTCATGGCCCGAGAACACGCTCCATCTATCATCTTCATGGACGAAATCGACTCCATTGGC
SKNB1_0058_G01.b : GTCATGGCCCGAGAACACGCTCCATCTATCATCTTCATGGACGAAATCGACTCCATTGGC
SKNB1_0069_H10.b : GTCATGGCCCGAGAACACGCTCCATCTATCATCTTCATGGACGAAATCGACTCCATTGGC
PCT01_0036_H03.b : GTCATGGCCCGAGAACACGCTCCATCTATCATCTTCATGGACGAAATCGACTCCATTGGC
SKNB1_0022_H10.b : GTCATGGCCCGAGAACACGCTCCATCTATCATCTTCATGGACGAAATCGACTCCATTGGC
20110601C-002102 : TCCTCGCGGCTGGAAAGGGGCTCTGGA*GGGGACAGTGAAGTCCAGCGCACGATGCTGGA
---------+---------+---------+---------+---------+---------+ 865
PCT01_0012_A04.b : TCCTCGCGGCTGGAAAGGGGCTCTGGG*AGGGACAGTGAAGTCCAGCGCACGATGCTGGA
SKNB1_0058_G01.b : TCCTCGCGGCTGGAAGGGGGCTCTGGANGGGNACAGTGAAGTCCAGCGCACGATGCTGGA
SKNB1_0069_H10.b : TCCTCGCGGCTGGAAGGGGGCTCTGGAGGGGNACAGTGAAGTCCAGCGCACGATGCTGGA
PCT01_0036_H03.b : TCCTCGCGGCCTGGNGGGGGCTCTGGA*GGGGACAATGAAATCCAcgcaacatgctggaa
SKNB1_0022_H10.b : TCCTCGCGGCTGGGAAGGGGCTCTGGA*GGAGACAGTGAAGTCCAGCGCACGATGCTGGA
20110601C-002102 : GCTGCTCAACCAGCTGGACGGCTTCGAGGCCACCAAAAATATCAAGGTTATCATGGCCAC
---------+---------+---------+---------+---------+---------+ 925
PCT01_0012_A04.b : GCTGCTCAACCAGCTGGACGGCTTCGAGGCCACCAAAAATATCAGGGTAATCATGGCCAC
SKNB1_0058_G01.b : GCTGCTNCACCAGCTGGACGGCTTCNAGGCCAC*AAAAATATCAAGGGTATCATGGCCAC
SKNB1_0069_H10.b : GCTGNCTCACCAGCTGGACGGCTTCGAGGCCACCAA*AATATCAAGGTTATCATGGCCAC
PCT01_0036_H03.b : ctggtcaacagctggaacgcttcaaggcccccaaaaattcaagggttatctggccccaaa
SKNB1_0022_H10.b : GCTGCTCAACCAGCTGGACGGCTTCGAGGCCACCAA*AATATCAAGGTTATCATGGCCAC
20110601C-002102 : TAATAGGATTGACATCCTGGACTCGGCGCTGCTCCGCCCAGGGCGCATCGACAGAAAAAT
---------+---------+---------+---------+---------+---------+ 985
PCT01_0012_A04.b : TANTAGGATTGACATCCTGGGACTCGCGCTGCTCCGCCCAGGGCGCATCGACAGAAAATT
SKNB1_0058_G01.b : TAATANGATTGACATCCTGGACTCGGCGCTGCTCCGCCCAGGGCGCATCGACAGAAAAAT
SKNB1_0069_H10.b : TAATAGGATTGACATCCTGGACTCGGCGCTGCTCCGCCCAGGGCGCATCGACAGAAAAAT
PCT01_0036_H03.b : aggattggaatcctggaactcggccttctccgcccaggggcttcccaaaaaaaattgatt
SKNB1_0022_H10.b : TAATAGGATTGACATCCTGGAACTCGCGCTGCTCCGCCCAGGGCGCATCGACAGAAAAAT
20110601C-002102 : TGATTTCCACCCCCCCACGAGAAGGCCCGGCTGGACATTTTGAAGATCC...........
---------+---------+---------+---------+---------+---------+ 1034
PCT01_0012_A04.b : GAATTTCCCACCCCCAACGAGGAGGCCCGGCTGGAACTTTTGAAGATCCtttctcgaaaa
SKNB1_0058_G01.b : TGATTCCCACCCCCCCACGAGAAGGCCggctggaacatttgnaagaacatttctcgaaaa
SKNB1_0069_H10.b : TGAATCCCACCCCCCaccagaagggcgggctggacattttgaagatccattctcggaaat
PCT01_0036_H03.b : tcccccccaaaagggaagcccgcgggaatttttaaaatctttcccgaaaagaacttaccc
SKNB1_0022_H10.b : TGAATTCCCACCCCCCACGAGGAGGCCCGGCTGGACATTTTGaagaatcattctcggaaa
20110601C-002102 : ............................................................
---------+---------+---------+---------+---------+---------+ 1034
PCT01_0012_A04.b : tgaacttgaaccggggcatcaactggaaaaaattgttgactcttgcaggacctccgggcc
SKNB1_0058_G01.b : atgaactgaccgggggcatcaacctgagaaaaatggttgactcttgcccggacacaaagg
SKNB1_0069_H10.b : gaanctgaaccgggcatcaactgagaaaaatgttgaactctgcccggacatacgccctta
PCT01_0036_H03.b : gggctccccccaaaaaaatttttaattttcccaaaatctgggttaaaaaaagggggtggc
SKNB1_0022_H10.b : agaaacctgaccgggggcatcagcctgaaaaaaattgctgaactcaagccaggagcatca
20110601C-002102 : ............................................................
---------+---------+---------+---------+---------+---------+ 1034
PCT01_0012_A04.b : taaatgaaggggtgtggccccacccggattgtacccttgccaaggggatccccttccccg
SKNB1_0058_G01.b : ctaaaattaaaagggtggggccccaaccggctgtatcccttggccgaagggaaacccctt
SKNB1_0069_H10.b : aataaagggcgggggcccaaaccccttgtacccttcccaaacgaaaccccttccccccca
PCT01_0036_H03.b : cccaacccggtttacccctccaaaaggaactcctctcccacaaattttaaggcgccccca
SKNB1_0022_H10.b : ggcccctaaaatgaagggcg
20110601C-002102 : ............................................................
---------+---------+---------+---------+---------+---------+ 1034
PCT01_0012_A04.b : gaggaattaaatgccctacccgggttgcaaagacgggaaaacatgccctcaaacttggaa
SKNB1_0058_G01.b : ccccccgggaattttgatggggctacccgggcctggcaaaggaacccgaaaaatgctcct
SKNB1_0069_H10.b : aattttaatgccctacccggcctcccaaagaccgaaaaattctctta
PCT01_0036_H03.b : gcttcaaaaagacaaaaaaaatttccccaaatttaagggggggggttttttggtttcccc
SKNB1_0022_H10.b :
20110601C-002102 : ............................................................
---------+---------+---------+---------+---------+---------+ 1034
PCT01_0012_A04.b : gggggggggttctctggatcctcaaaaaatctggaaaaaaaaaaaaaagccattttcttt
SKNB1_0058_G01.b : ta
SKNB1_0069_H10.b :
PCT01_0036_H03.b : aaaaagggggagaaaaaaaaaaaaaaaaaaaaagggttgggtgggggggcgcaaaaaaaa
SKNB1_0022_H10.b :
20110601C-002102 : ............................................................
---------+---------+---------+---------+---------+---------+ 1034
PCT01_0012_A04.b : tgggcgcgcaaaaaataaaaacccccccctcaaaaaaaaaaagattttgttttttttttt
SKNB1_0058_G01.b :
SKNB1_0069_H10.b :
PCT01_0036_H03.b : aaaacccccccccaaaaaaaaaatttttttttttttttttaaaaaaaaaaaaaaaaaaat
SKNB1_0022_H10.b :
20110601C-002102 : ............................................................
---------+---------+---------+---------+---------+---------+ 1034
PCT01_0012_A04.b : ttgttaaaaaaccaccaaaaattttttttttgtggaaaatatttgccgggaaatatctcc
SKNB1_0058_G01.b :
SKNB1_0069_H10.b :
PCT01_0036_H03.b : tttttttttatataagacagcaccccccccgccccccct
SKNB1_0022_H10.b :
20110601C-002102 : ............................................................
---------+---------+---------+---------+---------+---------+ 1034
PCT01_0012_A04.b : cctctggggccgnnnnnnttgatgnnanaggnnnnnnnnnnnaaaaaagcgtcttgtcct
SKNB1_0058_G01.b :
SKNB1_0069_H10.b :
PCT01_0036_H03.b :
SKNB1_0022_H10.b :
20110601C-002102 : ............................................................
---------+---------+---------+---------+---------+---------+ 1034
PCT01_0012_A04.b : tcctcttctcnt
SKNB1_0058_G01.b :
SKNB1_0069_H10.b :
PCT01_0036_H03.b :
SKNB1_0022_H10.b :