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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-003129

Length: 1,241

Sequence [FASTA format sequence]
TTAATTCTAC AGATGTGTGT AGAAGCCGCA GCAGAAGCTG TCAAACTGAA CTGCCGGATT
TTGGGAGTAG GCATTTCCAC AGGCGGCCGG GTAAATCCTC GGGAAGGAAT TGTGCTGCAT
TCCACCAAAC TGATTCAAGA ATGGAACTCT GTGGATCTCA GGACCCCCCT GTCTGACACT
TTGCATCTCC CCGTGTGGGT AGACAACGAC GGCAACTGTG CTGCTTTGGC AGAAAGGAAA
TTTGGCCAAG GAAAGGGCCT GGAGAACTTC GTGACGCTTA TCACAGGCAC AGGAATTGGC
GGAGGGATCA TCCATCAGCA TGAACTGATC CACGGAAGCT CCTTCTGTGC TGCAGAGCTC
GGCCACATTG TGGTGTCCCT GGATGGCCCT GACTGTTCCT GTGGGAGCCA CGGGTGTATT
GAAGCCTATG CCTCTGGAAT GGCCTTGCAG AGGGAAGCCA AAAAGCTACA CGACGAAGAC
CAGCTCTTGG TGGAAGGGAT GTCCGTGCCC AAAGACGAAG CTGTGGGCGC GCTCCATCTC
ATCCAAGCTG CGAAACTTGG CAATGCGAAG GCCCAGAGCA TCTTGAGGAC AGCTGGAACA
GCTTTAGGTC TGGGGGTTGT GAACATCCTC CACACCATGA ATCCCTCCCT TGTGATCCTC
TCTGGAGTCC TAGCCAGTCA CTACATCCAC ACTGTCAAAG ATGTCATCCG CCAGCAAGCC
CTGTCCTCGG TTCAGGACGT GGACGTGGTG GTTTCGGATT TGGTGGAACC CGCCCTGCTT
GGCGCCGCCA GCATGGTCCT GGACTACACA ACACGCAGGA TCTACTAGGC TTCCCGGCAG
TGGACATGGA CCGAGACTCA AGAGCTCCTT GGCGGAATCA GGTTGTCTTC TAGATGAGCA
TTTCTTAAAA AAGCAAATTT GGTACTTAGA TTTGTTATTT GGCAGGTGAC TTTGGCAGGG
ATGTTGTTGC TTTTAGTCTC CTTTTCCAAA GTCCCTCTCT TCCCAACCCC CATTTTTGTA
GCTGCTGCTC TTTCTGGGGT CCTTTCAGCT CAAACCTTGG AAGGACCAGT CACCATCTTC
TGTACCAAAA GGACCTGCAA CAGTAGATGA AGAAAGCTTA NGACGCTGCT TTCCAGATGT
AGTGCTTAGA CCTACAGCCT TGCTGGGGTG TGACTTGATA CCAGCGTTTG GCTCATTAAT
CCTCNTTCCT CTGACCTAAA TTCAGGACAC ATAAATGGAT C


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinGNEbifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase isoform 3 [Homo sapiens]. 473e-133
Contig/Assembly ProteinGNEbifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase isoform 5 [Homo sapiens]. 473e-133
Contig/Assembly ProteinGNEbifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase isoform 2 [Homo sapiens]. 473e-133
Contig/Assembly ProteinGNEbifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase isoform 1 [Homo sapiens]. 473e-133
Contig/Assembly ProteinGNEbifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase isoform 4 [Homo sapiens]. 2911e-78


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinGnebifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase isoform 2 [Mus musculus]. 464e-131
Contig/Assembly ProteinGnebifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase isoform 1 [Mus musculus]. 464e-131


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC481607PREDICTED: similar to Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase (UDP-GlcNAc-2-epimerase/ManAc kinase) [Canis familiaris]. 463e-130


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinGNEbifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase [Bos taurus]. 478e-135
Contig/Assembly ProteinGNEPREDICTED: glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase [Bos taurus]. 478e-135


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinGNEbifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase [Sus scrofa]. 480e-136


Assembly Members: 9      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
LVRM10038E04LVRM1_0038_E04.bCJ001677 
LVRM10159D11LVRM1_0159_D11.bBP451323 
OVRM10184B12OVRM1_0184_B12.bBP456488 
PST010037G01PST01_0037_G01.bFS699754 
SMG010046A11SMG01_0046_A11.bFS717253 
SMG010068E09SMG01_0068_E09.bFS719149 
SMG010099F01SMG01_0099_F01.bFS721797 AK397618
TCH010071E09TCH01_0071_E09.bCJ027538 
TCH010095G07TCH01_0095_G07.bCJ029408 

  

SNP: 1      TOP
Loc.AlleleIndividualsFreq.TypeAA Change
WesternMeishan
702C020.286BSGAC/D
T500.714GAT/D


Alignment:      TOP

20110601C-003129 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
SMG01_0099_F01.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnx
TCH01_0095_G07.b :
LVRM1_0159_D11.b :
TCH01_0071_E09.b :
LVRM1_0038_E04.b :
OVRM1_0184_B12.b :
SMG01_0068_E09.b :
PST01_0037_G01.b :
SMG01_0046_A11.b :
20110601C-003129 : .......TTAATTCTACAGATGTGTGTAGAAGCCGCAGCAGAAGCTGTCAAACTGAACTG
---------+---------+---------+---------+---------+---------+ 53
SMG01_0099_F01.b : xxxxxxxTTAATTCTACAGATGTGTGTAGAAGCCGCAGCAGAAGCTGTCAAACTGAACTG
TCH01_0095_G07.b : nntttgcttggactataacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVRM1_0159_D11.b :
TCH01_0071_E09.b :
LVRM1_0038_E04.b :
OVRM1_0184_B12.b :
SMG01_0068_E09.b :
PST01_0037_G01.b :
SMG01_0046_A11.b :
20110601C-003129 : CCGGATTTTGGGAGTAGGCATTTCCACAGGCGGCCGGGTAAATCCTCGGGAAGGAATTGT
---------+---------+---------+---------+---------+---------+ 113
SMG01_0099_F01.b : CCGGATTTTGGGAGTAGGCATTTCCACAGGCGGCCGGGTAAATCCTCGGGAAGGAATTGT
TCH01_0095_G07.b : xxxxxxxxxxxxxxxxxxxxxxxxxxCAGGCGGCCGGGTAAATCCTCGGGAAGGAATTGT
LVRM1_0159_D11.b : cagtttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
TCH01_0071_E09.b : nnnggctaggactatgacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVRM1_0038_E04.b :
OVRM1_0184_B12.b :
SMG01_0068_E09.b :
PST01_0037_G01.b :
SMG01_0046_A11.b :
20110601C-003129 : GCTGCATTCCACCAAACTGATTCAAGAATGGAACTCTGTGGATCTCAGGACCCCCCTGTC
---------+---------+---------+---------+---------+---------+ 173
SMG01_0099_F01.b : GCTGCATTCCACCAAACTGATTCAAGAATGGAACTCTGTGGATCTCAGGACCCCCCTGTC
TCH01_0095_G07.b : GCTGCATTCCACCAAACTGATTCAAGAATGGAACTCTGTGGATCTCAGGACCCCCCTGTC
LVRM1_0159_D11.b : xxxxxxxxxxxxxxxxxxGATTCAAGAATGGAACTCTGTGGATCTCAGGACCCCCCTGTC
TCH01_0071_E09.b : xxxxxxxxxxxxxxxxxxxxxxCAAGAATGGAACTCTGTGGATCTCAGGACCCCCCTGTC
LVRM1_0038_E04.b : gagttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVRM1_0184_B12.b : gagttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
SMG01_0068_E09.b : ggctctttnnnggatatxxxxxxxxxxxx
PST01_0037_G01.b :
SMG01_0046_A11.b :
20110601C-003129 : TGACACTTTGCATCTCCCCGTGTGGGTAGACAACGACGGCAACTGTGCTGCTTTGGCAGA
---------+---------+---------+---------+---------+---------+ 233
SMG01_0099_F01.b : TGACACTTTGCATCTCCCCGTGTGGGTAGACAACGACGGCAACTGTGCTGCTTTGGCAGA
TCH01_0095_G07.b : TGACACTTTGCATCTCCCCGTGTGGGTAGACAACGACGGCAACTGTGCTGCTTTGGCAGA
LVRM1_0159_D11.b : TGACACTTTGCATCTCCCCGTGTGGGTAGACAACGATGGCAACTGTGCTGCTTTGGCAGA
TCH01_0071_E09.b : TGACACTTTGCATCTCCCCGTGTGGGTAGACAACGACGGCAACTGTGCTGCTTTGGCAGA
LVRM1_0038_E04.b : xxxxxxxxxxxxxxxxxxxGTGTGGGTAGACAACGACGGCAACTGTGCTGCTTTGGCAGA
OVRM1_0184_B12.b : xxxxxxxxxxxxxxxxxxxGTGTGGGTAGACAACGATGGCAACTGTGCTGCTTTGGCAGA
SMG01_0068_E09.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGACGGCAACTGTGCTGCTTTGGCAGA
PST01_0037_G01.b : ctgctttggctctgtggctgctttgga
SMG01_0046_A11.b : nncccgtttttatngggctaaagcagcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20110601C-003129 : AAGGAAATTTGGCCAAGGAAAGGGCCTGGAGAACTTCGTGACGCTTATCACAGGCACAGG
---------+---------+---------+---------+---------+---------+ 293
SMG01_0099_F01.b : AAGGAAATTTGGCCAAGGAAAGGGCCTGGAGAACTTCGTGACGCTTATCACAGGCACAGG
TCH01_0095_G07.b : AAGGAAATTTGGCCAAGGAAAGGGCCTGGAGAACTTCGTGACGCTTATCACAGGCACAGG
LVRM1_0159_D11.b : AAGGAAATTTGGCCAAGGAAAGGGCCTGGAGAACTTCGTGACGCTTATCACAGGCACAGG
TCH01_0071_E09.b : AAGGAAATTTGGCCAAGGAAAGGGCCTGGAGAACTTCGTGACGCTTATCACAGGCACAGG
LVRM1_0038_E04.b : AAGGAAATTTGGCCAAGGAAAGGGCCTGGAGAACTTCGTGACGCTTATCACAGGCACAGG
OVRM1_0184_B12.b : AAGGAAATTTGGCCAAGGAAAGGGCCTGGAGAACTTCGTGACGCTTATCACAGGCACAGG
SMG01_0068_E09.b : AAGGAAATTTGGCCAAGGAAAGGGCCTGGAGAACTTCGTGACGCTTATCACAGGCACAGG
PST01_0037_G01.b : gaaggAATTTGGCCA*GGAAAGGGCCTGGAGAACTTCGTGACGCTTATCACAGGCACAGG
SMG01_0046_A11.b : xxxxxxxxTTGGCCAAGGAAAGGGCCTGGAGAACTTCGTGACGCTTATCACAGGCACAGG
20110601C-003129 : AATTGGCGGAGGGATCATCCATCAGCATGAACTGATCCACGGAAGCTCCTTCTGTGCTGC
---------+---------+---------+---------+---------+---------+ 353
SMG01_0099_F01.b : AATTGGCGGAGGGATCATCCATCAGCATGAACTGATCCACGGAAGCTCCTTCTGTGCTGC
TCH01_0095_G07.b : AATTGGCGGAGGGATCATCCATCAGCATGAACTGATCCACGGAAGCTCCTTCTGTGCTGC
LVRM1_0159_D11.b : AATTGGCGGAGGGATCATCCATCAGCATGAACTGATCCACGGAAGCTCCTTCTGTGCTGC
TCH01_0071_E09.b : AATTGGCGGAGGGATCATCCATCAGCATGAACTGATCCACGGAAGCTCCTTCTGTGCTGC
LVRM1_0038_E04.b : AATTGGCGGAGGGATCATCCATCAGCATGAACTGATCCACGGAAGCTCCTTCTGTGCTGC
OVRM1_0184_B12.b : AATTGGCGGAGGGATCATCCATCAGCATGAACTGATCCACGGAAGCTCCTTCTGTGCTGC
SMG01_0068_E09.b : AATTGGCGGAGGGATCATCCATCAGCATGAACTGATCCACGGAAGCTCCTTCTGTGCTGC
PST01_0037_G01.b : AATTGGCGGAGGGATCATCCATCAGCATGAACTGATCCACGGAAGCTCCTTCTGTGCTGC
SMG01_0046_A11.b : AATTGGCGGAGGGATCATCCATCAGCATGAACTGATCCACGGAAGCTCCTTCTGTGCTGC
20110601C-003129 : AGAGCTCGGCCACATTGTGGTGTCCCTGGATGGCCCTGACTGTTCCTGTGGGAGCCACGG
---------+---------+---------+---------+---------+---------+ 413
SMG01_0099_F01.b : AGAGCTCGGCCACATTGTGGTGTCCCTGGATGGCCCTGACTGTTCCTGTGGGAGCCACGG
TCH01_0095_G07.b : AGAGCTCGGCCACATTGTGGTGTCCCTGGATGGCCCTGACTGTTCCTGTGGGAGCCACGG
LVRM1_0159_D11.b : AGAGCTCGGCCACATTGTGGTGTCCCTGGATGGCCCTGACTGTTCCTGTGGGAGCCACGG
TCH01_0071_E09.b : AGAGCTCGGCCACATTGTGGTGTCCCTGGATGGCCCTGACTGTTCCTGTGGGAGCCACGG
LVRM1_0038_E04.b : AGAGCTCGGCCACATTGTGGTCTCCCTGGATGGCCCTGACTGTTCCTGTGGGAGCCACGG
OVRM1_0184_B12.b : AGAGCTCGGCCACATTGTAGTGTCCCTGGATGGCCCTGACTGTTCCTGTGGGAGCCACGG
SMG01_0068_E09.b : AGAGCTCGGCCACATTGTGGTGTCCCTGGATGGCCCTGACTGTTCCTGTGGGAGCCACGG
PST01_0037_G01.b : AGAGCTCGGCCACATTGTGGTGTCCCTGGATGGCCCTGACTGTTCCTGTGGGAGCCACGG
SMG01_0046_A11.b : AGAGCTCGGCCACATTGTGGTGTCCCTGGATGGCCCTGACTGTTCCTGTGGGAGCCACGG
20110601C-003129 : GTGTATTGAAGCCTATGCCTCTGGAATGGCCTTGCAGAGGGAAGCCAAAAAGCTACACGA
---------+---------+---------+---------+---------+---------+ 473
SMG01_0099_F01.b : GTGTATTGAAGCCCATGCCTCTGGAATGGCCTTGCAGAGGGAAGCCAAAAAGCTACACGA
TCH01_0095_G07.b : GTGTATTGAAGCCTATGCCTCTGGAATGGCCTTGCAGAGGGAAGCCAAAAAGCTACACGA
LVRM1_0159_D11.b : GTGTATTGAAGCCTATGCCTCTGGAATGGCCTTGCAGAGGGAAGCCAAAAAGCTACACGA
TCH01_0071_E09.b : GTGTATTGAAGCCTATGCCTCTGGAATGGCCTTGCAGAGGGAAGCCAAAAAGCTACACGA
LVRM1_0038_E04.b : GTGTATTGAAGCCTATGCCTCTGGAATGGCCTTGCAGAGGGAAGCCAAAAAGCTACACGA
OVRM1_0184_B12.b : GTGTATTGAAGCCTATGCCTCTGGAATGGCCTTGCAGAGGGAAGCCAAAAAGCTACACGA
SMG01_0068_E09.b : GTGTATTGAAGCCTATGCCTCTGGAATGGCCTTGCAGAGGGAAGCCAAAAAGCTACACGA
PST01_0037_G01.b : GTGTATTGAAGCCTATGCCTCTGGAATGGCCTTGCAGAGGGAAGCCAAAAAGCTACACGA
SMG01_0046_A11.b : GTGTATTGAAGCCTATGCCTCTGGAATGGCCTTGCAGAGGGAAGCCAAAAAGCTACACGA
20110601C-003129 : CGAAGACCAGCTCTTGGTGGAAGGGATGTCCGTGCCCAAAGACGAAGCTGTGGGCGCGCT
---------+---------+---------+---------+---------+---------+ 533
SMG01_0099_F01.b : CGAAGACCAGCTCTTGGTGGAAGGGATGTCCGTGCCCAAAGACGAAGCTGTGGGCGCGCT
TCH01_0095_G07.b : CGAAGACCAGCTCTTGGTGGAAGGGATGTCCGTGCCCAAAGACGAAGCTGTGGGCGCGCT
LVRM1_0159_D11.b : CGAAGACCAGCTCTTGGTGGAAGGGATGTCCGTGCCCAAAGACGAAGCTGTGGGCGCGCT
TCH01_0071_E09.b : CGAAGACCAGCTCTTGGTGGAAGGGATGTCCGTGCCCAAAGACGAAGCTGTGGGCGCGCT
LVRM1_0038_E04.b : CGAAGACCAGCTCTTGGTGGAAGGGATGTCCGTGCCCAAAGACGAAGCTGTGGGCGCGCT
OVRM1_0184_B12.b : TGAAGACCAGCTCTTGGTGGAAGGGATGTCCGTGCCCAAAGACGAAGCTGTGGGCGCGCT
SMG01_0068_E09.b : CGAAGACCAGCTCTTGGTGGAAGGGATGTCCGTGCCCAAAGACGAAGCTGTGGGCGCGCT
PST01_0037_G01.b : CGAAGACCAGCTCTTGGTGGAAGGGATGTCCGTGCCCAAAGACGAAGCTGTGGGCGCGCT
SMG01_0046_A11.b : CGAAGACCAGCTCTTGGTGGAAGGGATGTCCGTGCCCAAAGACGAAGCTGTGGGCGCGCT
20110601C-003129 : CCATCTCATCCAAGCTGCGAAACTTGGCAATGCGAAGGCCCAGAGCATCTTGAGGACAGC
---------+---------+---------+---------+---------+---------+ 593
SMG01_0099_F01.b : CCATCTCATCCAAGCTGCGAAACTTGGCAATGCGAAGGCCCAGAGCATCTTGAGGACAGC
TCH01_0095_G07.b : CCATCTCATCCAAGCTGCGAAACTTGGCAATGCGAAGGCCCAGAGCATCTTGAGGACAGC
LVRM1_0159_D11.b : CCATCTCATCCAAGCTGCGAAACTTGGCAATGCGAAGGCCCAGAGCATCTTGAGGACAGC
TCH01_0071_E09.b : CCATCTCATCCAAGCTGCGAAACTTGGCAATGCGAAGGCCCAGAGCATCTTGAGGACAGC
LVRM1_0038_E04.b : CCATCTCATCCAAGCTGCGAAACTTGGCAATGCGAAGGCCCAGAGCATCTTGAGGACAGC
OVRM1_0184_B12.b : CCATCTCATCCAAGCTGCGAAACTTGGCAATGCGAAGGCCCAGAGCATCTTGAGGACAGC
SMG01_0068_E09.b : CCATCTCATCCAAGCTGCGAAACTTGGCAATGCGAAGGCCCAGAGCATCTTGAGGACAGC
PST01_0037_G01.b : CCATCTCATCCAAGCTGCGAAACTTGGCAATGCGAAGGCCCAGAGCATCTTGAGGACAGC
SMG01_0046_A11.b : CCATCTCATCCAAGCTGCGAAACTTGGCAATGCGAAGGCCCAGAGCATCTTGAGGACAGC
20110601C-003129 : TGGAACAGCTTTAGGTCTGGGGGTTGTGAACATCCTCCACACCATGAATCCCTCCCTTGT
---------+---------+---------+---------+---------+---------+ 653
SMG01_0099_F01.b : TGGAACAGCTTTAGGTCTGGNGGTTGTGAACATCCTCCACACCATGAATCCCTCCCTTGT
TCH01_0095_G07.b : TGGAACAGCTTTAGGTCTGGGGGTTGTGAACATCCTCCACACCATGAATCCCTCCCTTGT
LVRM1_0159_D11.b : TGGAACAGCTTTAGGTCTGGGGGTTGTGAACATCCTCCACACCATGAATCCCTCCCTTGT
TCH01_0071_E09.b : TGGAACAGCTTTAGGTCTGGGGGTTGTGAACATCCTCCACACCATGAATCCCTCCCTTGT
LVRM1_0038_E04.b : TGGAACAGCTTTAGGTCTGGGGGTTGTGAACATCCTCCACACCATGAATCCCTCCCTTGT
OVRM1_0184_B12.b : TGGAACAGCTTTAGGTCTGGGGGTTGTGAACATCCTCCACACCATGAATCCCTCCCTTGT
SMG01_0068_E09.b : TGGAACAGCTTTAGGTCTGGGGGTTGTGAACATCCTCCACACCATGAATCCCTCCCTTGT
PST01_0037_G01.b : TGGAACAGCTTTAGGTCTGGGGGTTGTGAACATCCTCCACACCATGAATCCCTCCCTTGT
SMG01_0046_A11.b : TGGAACAGCTTTAGGTCTGGGGGTTGTGAACATCCTCCACACCATGAATCCCTCCCTTGT
20110601C-003129 : GATCCTCTCTGGAGTCCTAGCCAGTCACTACATCCACACTGTCAAAGATGTCATCCGCCA
---------+---------+---------+---------+---------+---------+ 713
SMG01_0099_F01.b : GATCCTCTCTGGAGTCCTAGCCAGTCACTACATCCACACTGTCAAAGATGTCATCCGCCA
TCH01_0095_G07.b : GATCCTCTCTGGAGTCCTAGCCAGTCACTACATCCACACTGTCAAAGATGTCATCCGCCA
LVRM1_0159_D11.b : GATCCTCTCTGGAGTCCTAGCCAGTCACTACATCCACACTGTCAAAGACGTCATCCGCCA
TCH01_0071_E09.b : GATCCTCTCTGGAGTCCTAGCCAGTCACTACATCCACACTGTCAAAGATGTCATCCGCCA
LVRM1_0038_E04.b : GATCCTCTCTGGAGTCCTAGCCAGTCACTACATCCACACTGTCAAAGACGTCATCCGCCA
OVRM1_0184_B12.b : GATCCTCTCTGGAGTCCTAGCCAGTCACTACATCCACACTGTCAAAGACGTCATCCGCCA
SMG01_0068_E09.b : GATCCTCTCTGGAGTCCTAGCCAGTCACTACATCCACACTGTCAAAGATGTCATCCGCCA
PST01_0037_G01.b : GATCCTCTCTGGAGTCCTAGCCAGTCACTACATCCACACTGTCAAAGATGTCATCCGCCA
SMG01_0046_A11.b : GATCCTCTCTGGAGTCCTAGCCAGTCACTACATCCACACTGTCAAAGATGTCATCCGCCA
20110601C-003129 : GCAAGCCCTGTCCTCGGTTCAGGACGTGGACGTGGTGGTTTCGGATTTGGTGGAACCCGC
---------+---------+---------+---------+---------+---------+ 773
SMG01_0099_F01.b : GCAAGCCCTGTCCTCGGTTCAAGACGTGGACGTGGTGGTTTCGGATTTGGTGAACCCCGC
TCH01_0095_G07.b : GCAAGCCCTGTCCTCGGTTCAGGACGTGGACGTGGTGGTTTCGGATTTGGTGGAACCCGC
LVRM1_0159_D11.b : GCAAGCCCTGTCCTCGGTTCAGGACGTGGACGTGGTGGTTTCTGAATTGGTGGAACCCGC
TCH01_0071_E09.b : GCAAGCCCTGTCCTCGGTTCAGGACGTGGACGTGGTGGTTTCGGATTTGGTGGAACCCGC
LVRM1_0038_E04.b : GCAAGCCCTGTCCTCGGTTCAGGACGTGGACGTGGTGGTTTCGGATTTGGTGGAACCCGC
OVRM1_0184_B12.b : GCAAGCCCTGTCCTCGGTTCAGGACGTGGACGTGGTGGTTTCGGATTTGGTGGAACCCGC
SMG01_0068_E09.b : GCAAGCCCTGTCCTCGGTTCAGGACGTGGACGTGGTGGTTTCGGATTTGGTGGAACCCGC
PST01_0037_G01.b : GCAAGCCCTGTCCTCGGTTCAGGACGTGGACGTGGTGGTTTCGGATTTGGTGGAACCCGC
SMG01_0046_A11.b : GCAAGCCCTGTCCTCGGTTCAGGACGTGGACGTGGTGGTTTCGGATTTGGTGGAACCCGC
20110601C-003129 : CCTGCTTGGCGCCGCCAGCATGGTCCTGGACTACACAACACGCAGGATCTACTAGGCTTC
---------+---------+---------+---------+---------+---------+ 833
SMG01_0099_F01.b : CCTGCTTGGCGCCGCCAGCATGGTCCTGGACTACACAACACGCAGGATCTACTAGGCTTC
TCH01_0095_G07.b : CCTGCTTGGCGCCGCCAGCATGGTCCTGGACTACACAACACGCAGGATCTACTAGGCTTC
LVRM1_0159_D11.b : CCTGCTTGGCGCCGCCAGCATGATCCTGGACTACACAACACGCAGGATCTACTAAGCTTC
TCH01_0071_E09.b : CCTGCTTGGCGCCGCCAGCATGGTCCTGGACTACACAACACGCAGGATCTACTAGGCTTC
LVRM1_0038_E04.b : CCTGCTTGGCGCCGCCAGCATGGTCCTGGACTACACAACGCGAAGGATCTACTAGGCTTC
OVRM1_0184_B12.b : CCTGCTTGGCGCCGCCAGCATGGTCCTGGACTACACAACACGCAGGATCTACTAGGCTTC
SMG01_0068_E09.b : CCTGCTTGGCGCCGCCAGCATGGTCCTGGACTACACAACACGCAGGATCTACTAGGCTTC
PST01_0037_G01.b : CCTGCTTGGCGCCGCCAGCATGGTCCTGGACTACACAACACGCAGGATCTACTAGGCTTC
SMG01_0046_A11.b : CCTGCTTGGCGCCGCCAGCATGGTCCTGGACTACACAACACGCAGGATCTACTAGGCTTC
20110601C-003129 : CCG*GCAGTGGACATGGACCGAGACTCAAGAGCTCCTTGGCGGAATCAGGTTGTCTTCTA
---------+---------+---------+---------+---------+---------+ 892
SMG01_0099_F01.b : CCGGGCAGTGGACATGGACCGAAACTCAGAAACTCCTTGGCGGAATCAGGTTGCCTTCTA
TCH01_0095_G07.b : CCG*GCAGTGGACATGGACCGNAGACTCAGAGCTCCTTGGCGGAATCAGGTTGTCTTCTA
LVRM1_0159_D11.b : CCGTC**GGGGACATGGACCGAGACTCAAGAGCTCCTTG
TCH01_0071_E09.b : CCG*GCAGTGGACATGGACCGAGACTNCAGAGCTCCTTGGCGGAATCAGGTTGTCTTCTA
LVRM1_0038_E04.b : CCGGCAGTGGGACATGGACTGAGA*CTCAGAGCTCCTTGGCGGAATCAGGTTGTCTTCTA
OVRM1_0184_B12.b : CCG*GCAGTGGACATGGACCGAGACTCAAGAGCTCCTTGGCGGAATCAGGTTGTCTTCTA
SMG01_0068_E09.b : CCG*GCAGTGGACATGGACCGAGACTCAAGAGCTCCTTGGCGGAATCAGGTTGTCTTCTA
PST01_0037_G01.b : CCG*GCAGTGGACATGGACCGAGACTCAAGAGCTCCTTGGCGGAATCAGGTTGTCTTCTA
SMG01_0046_A11.b : CCG*GCAGTGGACATGGACCGAGACTCAAGAGCTCCTTGGCGGAATCAGGTTGTCTTCTA
20110601C-003129 : GATGAGCATTTCTTAAAAAAGCAAATTTGGTACTTAGATTTGTTATTTGGCAGGTGACTT
---------+---------+---------+---------+---------+---------+ 952
SMG01_0099_F01.b : AATAAGCATTTCCTAAAAAACCAAAATTGGacttaaaattgtttatttggcagggaattt
TCH01_0095_G07.b : GATGAGCATTTC*TAAAAAAGCAAATTTGGTACTTTAGATTGTTATTTGGCAGGTGACTT
LVRM1_0159_D11.b :
TCH01_0071_E09.b : GATGAGCGTTTCTTAAAAAAGCAAATTTGGTACTTAGATTTGTTATTTGGCAGGTGACTT
LVRM1_0038_E04.b : GATGAGCATTTCTTAAAAAgcaaa
OVRM1_0184_B12.b : GATGAGCATTTCTTTAAAAAGCAAATTTGGTACTTAGATTTTGTATTTGGCAGGTGACTT
SMG01_0068_E09.b : GATGAGCATTTCTTANAAAAGCAAATTTGGTACTTAGATTTGTTATTTGGCAGGTGACTT
PST01_0037_G01.b : GATGAGCATTTCTTAAAAAAGCAAATTTGGTACTTAGATTTGTTATTTGGCAGGTGACTT
SMG01_0046_A11.b : GATGAGCATTTCTTAAAAAAGCAAATTTGGTGCTTAGATTTGTTATTTGGCAGGTGACTT
20110601C-003129 : TGGCAGGGATGTTGTTGCTTTTAGTCTCCTTTTCCAAAGTCCCTCTCTTCCCAACCCCCA
---------+---------+---------+---------+---------+---------+ 1012
SMG01_0099_F01.b : tggcaggaatgttggtgcctttaaccccctttccaaaatcccctttttcccaaaccccat
TCH01_0095_G07.b : TGGCAGGNNATGTGTTGCTTTTAGTCTCCTTTT*CAAAGTCCCTCTCTTCCCA*CCCCCA
LVRM1_0159_D11.b :
TCH01_0071_E09.b : TGGCAGGGATGTTGTTGCTTTTAGTCTCCTTTT*CAAAGTCCCTCTCTTCCAA*CCCCCA
LVRM1_0038_E04.b :
OVRM1_0184_B12.b : TGGCAGGGATGTTGTTGCTTTTAG
SMG01_0068_E09.b : TGGCAGGGATGTTGTTGCCTTTAGTCCCCTTTTCCCAAGTCCCTCTCTTCCCA*ACCCCA
PST01_0037_G01.b : TGGCAGGGATGTTGTTGCTTTTAGTCTCCTTTTCCAAAGTCCCTCTCTTCCCAACCCCCA
SMG01_0046_A11.b : TGGCAGGGATGTTGTTGCTTTTAGTCTCCTTTTCCAAAGTCCCTCTCTTCCCAACCCCCA
20110601C-003129 : TTTTTGTAGCTGCTGCTCTTTCTGGGGTCCTTTCAGCTCAAACCTTGGAAGGACCAGTCA
---------+---------+---------+---------+---------+---------+ 1072
SMG01_0099_F01.b : tttgtaactcgggcctttttgggggcttttcactcaaaccctggaaggacagtccccttc
TCH01_0095_G07.b : TTTTTGTAGCTGCTGCTCTTTCTGGGGGTCTTTCAGgctcaaccttggaagggacagtca
LVRM1_0159_D11.b :
TCH01_0071_E09.b : TTTTTGTAGCTGCTGCTCTTTCTGGGGTCCTTTCACCTCAAACCTGGNAAGGA*CAGTCA
LVRM1_0038_E04.b :
OVRM1_0184_B12.b :
SMG01_0068_E09.b : ATTTTGTAACTGCTGCTCTTTTTGGGGTCCCTTtcactcaaaacttggaagggacagtca
PST01_0037_G01.b : TTTTTGTAGCTGCTGCTCTTTCTGGGGTCCTTTCAGCTCAAACCTTGGAAGGACCAGTCA
SMG01_0046_A11.b : TTTTTGTAGCTGCTGCTCTTTCTGGGGTCCTTTCAGCTCAAAACTTGGAAGGACCAGTCA
20110601C-003129 : CCATCTTCTGTACCAAAAGGACCTGCAACAGTAGATGAAGAAAGCTTANGACGCTGCTTT
---------+---------+---------+---------+---------+---------+ 1132
SMG01_0099_F01.b : tttgtaccaaaaggacctggcacaaaaataaagaacctttggaccccctttctaaattat
TCH01_0095_G07.b : catcttctgtaccaaaagaccctgcacagtaaatgaggaagccttangacgctgctttcc
LVRM1_0159_D11.b :
TCH01_0071_E09.b : CCATCTTCTGTACCAAAgggacctgcacagtaaatgaagaaaccttaagacgctgctttt
LVRM1_0038_E04.b :
OVRM1_0184_B12.b :
SMG01_0068_E09.b : caatctcggaccaaaaggacctgccacagtaaatgagggaacccttaggacccgcctttc
PST01_0037_G01.b : CCATCTTCTGTACCAAAAGGACCTGCAACAGTAGATGAAGAAAGCTTANGACGCTGCTTT
SMG01_0046_A11.b : CCATCTTCTGTACCAAAAGGgacctggcaccgtagatgaaggaaccttaggacgctgctt
20110601C-003129 : CCAGATGTAGTGCTTAGACCTACAGCCTTGCTGGGGTGTGACTTGATACCAGCGTTTGGC
---------+---------+---------+---------+---------+---------+ 1192
SMG01_0099_F01.b : ggttaaccccacggccctgcgggggggaacctaaacaacgtttgccctaaacccctcccc
TCH01_0095_G07.b : agatgtaatgcttaaacctacagccttgctggggtgtgacttgaaaccagcgtttgccca
LVRM1_0159_D11.b :
TCH01_0071_E09.b : ccgatgtagtgcttaaaactacaggccttgctggggtgtgacctgaaaaccgcggttggg
LVRM1_0038_E04.b :
OVRM1_0184_B12.b :
SMG01_0068_E09.b : caatggaggggttaaacctaagggcttggtggggggggaccctgaaaccagcgtttgggc
PST01_0037_G01.b : CCAGATGTAGTGCTTAGACCTACAGCCTTGCTGGGGTGTGACTTGATACCAGCGTTTGGC
SMG01_0046_A11.b : tccaaaggagtgctttaaactaaagggcttgctggggggggaccttgaaaccgcgttggc
20110601C-003129 : TCATTAATCCTCNTTCCTCTGACCTAAATTCAGGACACATAAATGGATC...........
---------+---------+---------+---------+---------+---------+ 1241
SMG01_0099_F01.b : gcgaaccattttggaaaaatatggttctccgggaaaaaaaaaccccccgagagttttgta
TCH01_0095_G07.b : ttaaacttctttccctgaccttaattctgaccattattggatcagtccgggacacaagaa
LVRM1_0159_D11.b :
TCH01_0071_E09.b : ctcataatccttccttctccggacctaattccggaccctaaatggatccgagctcggaac
LVRM1_0038_E04.b :
OVRM1_0184_B12.b :
SMG01_0068_E09.b : cataaacccttctcctccggacccaaattcgggaacaaaagggatgggccggggaacaag
PST01_0037_G01.b : TCATTAATCCTCNTTCCTCTGACCTAAATTCAGGACACATAAATGGATCgagtcaggaaa
SMG01_0046_A11.b : tcataaaccttcttccctgaacccaaatcaggaaactaaatggttcaatcgggaacaaag
20110601C-003129 : ............................................................
---------+---------+---------+---------+---------+---------+ 1241
SMG01_0099_F01.b : cttttaacccgttaaagggttttttttttttcgcccctttaagattttgtaccccccggg
TCH01_0095_G07.b : accccccttaaaggtttgtaactttgagaacgctttttcaggtattttttttttttttaa
LVRM1_0159_D11.b :
TCH01_0071_E09.b : aaaggaatccccttcggaaggcttagtaaacttgtaaaaaccgttttcagggtatttttt
LVRM1_0038_E04.b :
OVRM1_0184_B12.b :
SMG01_0068_E09.b : gaaacccccctggaagggttaggaactttgtaaaaacctttttaaaggtttttttttttt
PST01_0037_G01.b : cagaangaaatcgcatcatgaaaggcttatgcaacttttgtaagaccgttttatcaaggt
SMG01_0046_A11.b : gaaatcccatttaaaggctttttaaactttgtaaaacgttttttcaggattttttttttt
20110601C-003129 : ............................................................
---------+---------+---------+---------+---------+---------+ 1241
SMG01_0099_F01.b : accgccccataataaaaatctcccccccggtcgcaaagattttttttcccaccaac
TCH01_0095_G07.b : cggcaccttat
LVRM1_0159_D11.b :
TCH01_0071_E09.b : ttttacaggcccctttaaagcttta
LVRM1_0038_E04.b :
OVRM1_0184_B12.b :
SMG01_0068_E09.b : ttagggccctttgaaaactttacaattcatccgcggaaaccggaccctatttaaaccaaa
PST01_0037_G01.b : atttttttttttacgggcaccatttgaaagctttgaactacctacatacctggaaaactt
SMG01_0046_A11.b : ttaaggcccctttaaaaactttggaaactcaatctgtgaaacccggcccctttaaaccca
20110601C-003129 : ............................................................
---------+---------+---------+---------+---------+---------+ 1241
SMG01_0099_F01.b :
TCH01_0095_G07.b :
LVRM1_0159_D11.b :
TCH01_0071_E09.b :
LVRM1_0038_E04.b :
OVRM1_0184_B12.b :
SMG01_0068_E09.b : atcttccccccccggaaacctgcaaaagttttttttatcttctaaaccttaaatttaaca
PST01_0037_G01.b : ggcccccattaaaactccgatgactcttcaccccccctggatcttgccaaagaggtattt
SMG01_0046_A11.b : gaaactttttccccccgtttaacgtcaaaagtttttttgttactttctcaaacgtggaac
20110601C-003129 : ............................................................
---------+---------+---------+---------+---------+---------+ 1241
SMG01_0099_F01.b :
TCH01_0095_G07.b :
LVRM1_0159_D11.b :
TCH01_0071_E09.b :
LVRM1_0038_E04.b :
OVRM1_0184_B12.b :
SMG01_0068_E09.b : gggttattaaggcttttaactttctccctctggggggagaaccacaaatacccaaaaatc
PST01_0037_G01.b : ctaaaaccctgcaaaccttgaaacttttaaccgggattgatttacgggccctattgacct
SMG01_0046_A11.b : tttaccagggttgattagagggccttttcctttctttttttttggggcgggaaccccaat
20110601C-003129 : ............................................................
---------+---------+---------+---------+---------+---------+ 1241
SMG01_0099_F01.b :
TCH01_0095_G07.b :
LVRM1_0159_D11.b :
TCH01_0071_E09.b :
LVRM1_0038_E04.b :
OVRM1_0184_B12.b :
SMG01_0068_E09.b : ccccgtgtcctccccgggaaaaaaacacctggcttgggagtagttccccccagaaagagg
PST01_0037_G01.b : tccttacctttttaggacctgaa
SMG01_0046_A11.b : atacccctgagaattccccaagttcccgccccggggaaaaaacaacccgcg
20110601C-003129 : ............................................................
---------+---------+---------+---------+---------+---------+ 1241
SMG01_0099_F01.b :
TCH01_0095_G07.b :
LVRM1_0159_D11.b :
TCH01_0071_E09.b :
LVRM1_0038_E04.b :
OVRM1_0184_B12.b :
SMG01_0068_E09.b : aacctgtgtgtcgcgcccaaccacacaaaaagagggggggccgtgggcccttctttgtat
PST01_0037_G01.b :
SMG01_0046_A11.b :
20110601C-003129 : ............................................................
---------+---------+---------+---------+---------+---------+ 1241
SMG01_0099_F01.b :
TCH01_0095_G07.b :
LVRM1_0159_D11.b :
TCH01_0071_E09.b :
LVRM1_0038_E04.b :
OVRM1_0184_B12.b :
SMG01_0068_E09.b : tatattattg
PST01_0037_G01.b :
SMG01_0046_A11.b :